Schema for ceBlastTab
  Database: mm10    Primary Table: ceBlastTab    Row Count: 4,992   Data last updated: 2019-09-20
Format description: Blast alignments of C. elegans genes
fieldexampleSQL type info description
query ENSMUST00000190686.6varchar(255) values Name of sequence in this assembly (query)
target Y57A10A.19varchar(255) values Name of sequence in other assembly (target)
identity 42.76float range Percent identity
aliLength 152int(10) unsigned range Length of alignment
mismatch 81int(10) unsigned range Number of mismatches
gapOpen 4int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 151int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 147int(10) unsigned range End in target (non-inclusive)
eValue 4e-18double range Expectation value
bitScore 92.4double range Bit score

Connected Tables and Joining Fields
        mm10.bioCycPathway.kgID (via ceBlastTab.query)
      mm10.ccdsKgMap.geneId (via ceBlastTab.query)
      mm10.dmBlastTab.query (via ceBlastTab.query)
      mm10.drBlastTab.query (via ceBlastTab.query)
      mm10.foldUtr3.name (via ceBlastTab.query)
      mm10.foldUtr5.name (via ceBlastTab.query)
      mm10.hgBlastTab.query (via ceBlastTab.query)
      mm10.keggPathway.kgID (via ceBlastTab.query)
      mm10.kgAlias.kgID (via ceBlastTab.query)
      mm10.kgColor.kgID (via ceBlastTab.query)
      mm10.kgProtAlias.kgID (via ceBlastTab.query)
      mm10.kgProtMap2.qName (via ceBlastTab.query)
      mm10.kgSpAlias.kgID (via ceBlastTab.query)
      mm10.kgTargetAli.qName (via ceBlastTab.query)
      mm10.kgTxInfo.name (via ceBlastTab.query)
      mm10.kgXref.kgID (via ceBlastTab.query)
      mm10.knownAttrs.kgID (via ceBlastTab.query)
      mm10.knownBlastTab.query (via ceBlastTab.query)
      mm10.knownBlastTab.target (via ceBlastTab.query)
      mm10.knownCanonical.transcript (via ceBlastTab.query)
      mm10.knownCds.name (via ceBlastTab.query)
      mm10.knownGene.name (via ceBlastTab.query)
      mm10.knownGeneMrna.name (via ceBlastTab.query)
      mm10.knownGenePep.name (via ceBlastTab.query)
      mm10.knownIsoforms.transcript (via ceBlastTab.query)
      mm10.knownToEnsembl.name (via ceBlastTab.query)
      mm10.knownToKeggEntrez.name (via ceBlastTab.query)
      mm10.knownToLocusLink.name (via ceBlastTab.query)
      mm10.knownToLynx.name (via ceBlastTab.query)
      mm10.knownToMrna.name (via ceBlastTab.query)
      mm10.knownToMrnaSingle.name (via ceBlastTab.query)
      mm10.knownToPfam.name (via ceBlastTab.query)
      mm10.knownToRefSeq.name (via ceBlastTab.query)
      mm10.knownToSuper.gene (via ceBlastTab.query)
      mm10.knownToTag.name (via ceBlastTab.query)
      mm10.knownToVisiGene.name (via ceBlastTab.query)
      mm10.knownToWikipedia.name (via ceBlastTab.query)
      mm10.rnBlastTab.query (via ceBlastTab.query)
      mm10.scBlastTab.query (via ceBlastTab.query)
      mm10.ucscScop.ucscId (via ceBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
ENSMUST00000190686.6Y57A10A.1942.76152814015101474e-1892.4
ENSMUST00000037023.8B0412.473.21561500560564e-1989.4
ENSMUST00000027131.5Y55F3BL.2b43.711678726648271302944e-37154
ENSMUST00000073076.11Y48G8AL.11a52.065822752118696866683e-168589
ENSMUST00000179802.1F28H1.4a29.681551042431951122650.000000451.6
ENSMUST00000205179.2C47B2.7b31.765292721812525184743e-55213
ENSMUST00000171010.7F54D5.11.238.642951649028502888e-43171
ENSMUST00000170909.1T23G7.1.252.652261003115337722952e-49193
ENSMUST00000096261.4Y54E10BR.676.741724000172231952e-72268
ENSMUST00000020220.14B0496.3e64.43253900553082965491e-94344

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.