Schema for mrnaOrientInfo
  Database: eriEur1    Primary Table: mrnaOrientInfo    Row Count: 43   Data last updated: 2017-06-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_100581varchar(255) values Reference sequence chromosome or scaffold
chromStart 403int(10) unsigned range Start position in chromosome
chromEnd 814int(10) unsigned range End position in chromosome
name AF339162varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 1smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        eriEur1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_100581403814AF33916210100
585scaffold_12256514741564AF33916200100
585scaffold_162015323469U331700100300
585scaffold_16217318802077AF33916200100
585scaffold_2042043905579JF51047750000
585scaffold_2255989955142AF33916210100
585scaffold_22734447224846AF33916200100
585scaffold_23022740895594AF13482621000
585scaffold_24643148665012U331700100300
585scaffold_2506441311013993AF13482601000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.