Schema for mrnaOrientInfo
  Database: dm3    Primary Table: mrnaOrientInfo    Row Count: 163,413   Data last updated: 2020-08-19
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 7527int(10) unsigned range Start position in chromosome
chromEnd 9486int(10) unsigned range End position in chromosome
name BT082087varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 23smallint(6) range Number of trailing A's
revSizePolyA 2smallint(6) range Number of trailing A's on reverse strand
signalPos 43smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        dm3.all_mrna.qName (via mrnaOrientInfo.name)
      dm3.flyBaseToRefSeq.value (via mrnaOrientInfo.name)
      dm3.refFlat.name (via mrnaOrientInfo.name)
      dm3.refGene.name (via mrnaOrientInfo.name)
      dm3.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr2L75279486BT0820871232430
585chr2L75289486BT0238721240440
585chr2L983621282BT1002289140400
585chr2L983918562X054268180410
585chr2L1057421372BT100129815000
585chr2L1070218560AY0516548190430
585chr2L1121417136FJ63467970000
585chr2L1121717136FJ62958570000
585chr2L2195124238BT0227921170350
585chr2L2539959242AY12946112140340

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.