Schema for mrnaOrientInfo
  Database: chrPic1    Primary Table: mrnaOrientInfo    Row Count: 61   Data last updated: 2020-05-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 589smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom JH584413varchar(255) values Reference sequence chromosome or scaffold
chromStart 600983int(10) unsigned range Start position in chromosome
chromEnd 620717int(10) unsigned range End position in chromosome
name DQ295020varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        chrPic1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
589JH584413600983620717DQ29502020000
668JH5844641096047210960784FJ80441100000
682JH5845141280233912807623EF12764020000
594JH58463712711301298540FJ827119190000
673JH5846801157593811606494FJ79111820000
607JH58471229010952901374GU17037600000
73JH584725277019565755FJ19559281000
611JH58474734269883429447EU43388410000
76JH58475032597723328089FJ710602110000
585JH5847792686963961FJ1955939150380

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.