Schema for Protease Cleavage - Protease Cleavage Sites
  Database: wuhCor1    Primary Table: unipProtease Data last updated: 2020-04-22
Big Bed File: /gbdb/wuhCor1/uniprot/protease_sitesCoV2.bb
Item Count: 17
Format description: Browser Extensible Data
fieldexampledescription
chromNC_045512v2Reference sequence chromosome or scaffold
chromStart10051Start position in chromosome
chromEnd10057End position in chromosome
name3CL-PRO_cleavageName of item.
score1000Score (0-1000)
strand++ or - for strand
thickStart10051Start of where display should be thick (start codon)
thickEnd10057End of where display should be thick (stop codon)
reserved12,12,120Used as itemRgb as of 2004-11-22

Sample Rows
 
chromchromStartchromEndnamescorestrandthickStartthickEndreserved
NC_045512v210051100573CL-PRO_cleavage1000+100511005712,12,120
NC_045512v210969109753CL-PRO_cleavage1000+109691097512,12,120
NC_045512v210969109753CL-PRO_cleavage1000+109691097512,12,120
NC_045512v211839118453CL-PRO_cleavage1000+118391184512,12,120
NC_045512v212088120943CL-PRO_cleavage1000+120881209412,12,120
NC_045512v212682126883CL-PRO_cleavage1000+126821268812,12,120
NC_045512v213021130273CL-PRO_cleavage1000+130211302712,12,120
NC_045512v213438134443CL-PRO_cleavage1000+134381344412,12,120
NC_045512v216233162393CL-PRO_cleavage1000+162331623912,12,120
NC_045512v218036180423CL-PRO_cleavage1000+180361804212,12,120

Protease Cleavage (unipProtease) Track Description
 

Description

This track shows annotated protease sites for human and viral proteases.

Display Conventions and Configuration

Each track highlights two amino acids (not the full recognition motif). The protease cut happens in the middle of the annotation.

Methods

These sites are directly taken from the Uniprot "Other Annotations" track and reprocessed to be more human-readable on the browser. "Other Annotations" marked as "site" were labeled with the protease that recognizes them.

References

UniProt Consortium. Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res. 2012 Jan;40(Database issue):D71-5. PMID: 22102590; PMC: PMC3245120

Yip YL, Scheib H, Diemand AV, Gattiker A, Famiglietti LM, Gasteiger E, Bairoch A. The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants. Hum Mutat. 2004 May;23(5):464-70. PMID: 15108278