Schema for Chromosome Band (Ideogram) - Chromosome Bands Based On ISCN Lengths (for Ideogram)

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Schema for Chromosome Band (Ideogram) - Chromosome Bands Based On ISCN Lengths (for Ideogram)

Database: rn6 Primary Table: cytoBandIdeo Row Count: 1,179 Data last updated: 2017-03-15
Format description: Describes the positions of cytogenetic bands with a chromosome
On download server: MariaDB table dump directory

field	example	SQL type	info	description
`chrom`	chr1	`varchar(255)`	values	Reference sequence chromosome or scaffold
`chromStart`	0	`int(10) unsigned`	range	Start position in genoSeq
`chromEnd`	10704345	`int(10) unsigned`	range	End position in genoSeq
`name`	p13	`varchar(255)`	values	Name of cytogenetic band
`gieStain`	gneg	`varchar(255)`	values	Giemsa stain results

Sample Rows

chrom	chromStart	chromEnd	name	gieStain
chr1	0	10704345	p13	gneg
chr1	10704345	25618263	p12	gvar
chr1	25618263	40652454	p11	gneg
chr1	40652454	51356799	q11	gpos
chr1	51356799	73607402	q12	gneg
chr1	73607402	95016091	q21	gpos
chr1	95016091	130617056	q22	gneg
chr1	130617056	149018906	q31	gpos
chr1	149018906	171269510	q32	gneg
chr1	171269510	179929204	q33	gpos

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.