Schema for Assembly - Assembly from NCBI Genbank Sequences
  Database: hub_567047_hs1    Primary Table: hub_567047_assembly Data last updated: 2022-01-27
Big Bed File Download: /gbdb/hs1/bbi/
Item Count: 25
The data is stored in the binary BigBed format.

Format description: Browser Extensible Data
chromCP068254.1Reference sequence chromosome or scaffold
chromStart0Start position in chromosome
chromEnd16569End position in chromosome
nameCP068254.1Name of item.
score0Score (0-1000)
strand++ or - for strand

Sample Rows

Assembly (hub_567047_assembly) Track Description


This track shows the sequences used in the 24 Jan 2022 Homo sapiens/GCA_009914755.4_T2T-CHM13v2.0 genome assembly.

Genome assembly procedures are covered in the NCBI assembly documentation.
NCBI also provides specific information about this assembly.

The definition of the gaps in this assembly is from the AGP file: GCA_009914755.4_T2T-CHM13v2.0.agp.gz
The NCBI document AGP Specification describes the format of the AGP file.

In dense mode, this track depicts the contigs that make up the currently viewed scaffold. Contig boundaries are distinguished by the use of alternating gold and brown coloration. Where gaps exist between contigs, spaces are shown between the gold and brown blocks. The relative order and orientation of the contigs within a scaffold is always known; therefore, a line is drawn in the graphical display to bridge the blocks.

This assembly has 25 component parts, with the following principal types of parts:

  • O - other sequence (count: 25)