Schema for GRC Map Contigs - Genome Reference Consortium Map Contigs
  Database: hg19    Primary Table: ctgPos2    Row Count: 259   Data last updated: 2010-10-26
Format description: Where a contig is inside of a chromosome.
fieldexampleSQL type info description
contig HSCHR1_CTG1varchar(255) values Name of contig
size 257719int(10) unsigned range Size of contig
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 10000int(10) unsigned range Start in chromosome
chromEnd 267719int(10) unsigned range End in chromosome
type Fchar(1) values  

Sample Rows
 
contigsizechromchromStartchromEndtype
HSCHR1_CTG1257719chr110000267719F
HSCHR1_CTG2153649chr1317719471368F
HSCHR1_CTG33323900chr15213683845268F
HSCHR1_CTG59224644chr1399526813219912F
HSCHR1_CTG816558170chr11331991229878082F
HSCHR1_CTG1190908613chr130028082120936695F
HSCHR1_CTG12398739chr1121086695121485434F
HSCHR1_CTG14432327chr1142535434142967761F
HSCHR1_CTG16426764chr1143117761143544525F
HSCHR1_CTG17126477chr1143644525143771002F

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GRC Map Contigs (ctgPos2) Track Description
 

Description

This track represents the names of the assembled super contigs as established by the Genome Reference Consortium. The contigs in this track are identical to those in the Map Contigs track, the difference being the the contigs in this track track are named according to GRC.

Data for this track were obtained from localId2acc files located at NCBI.