Schema for RefSeq Acc - RefSeq Accession
  Database: cavPor3    Primary Table: ucscToRefSeq    Row Count: 3,144   Data last updated: 2018-01-30
Format description: Browser extensible data
On download server: MariaDB table dump directory
fieldexampleSQL type info description
chrom chrMvarchar(255) values Reference sequence chromosome or scaffold
chromStart 0int(10) unsigned range Start position in chromosome
chromEnd 16801int(10) unsigned range End position in chromosome
name NC_000884.1varchar(255) values Name of item

Connected Tables and Joining Fields
        cavPor3.chromInfo.chrom (via ucscToRefSeq.chrom)

Sample Rows
 
chromchromStartchromEndname
chrM016801NC_000884.1
scaffold_0088675666NT_176419.1
scaffold_1081131790NT_176418.1
scaffold_10050759066NT_176409.1
scaffold_10005102418NT_176319.1
scaffold_1000029434NT_175419.1
scaffold_1001029428NT_175418.1
scaffold_1002054813NT_175417.1
scaffold_1003029300NT_175416.1
scaffold_1004029278NT_175415.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

RefSeq Acc (ucscToRefSeq) Track Description
 

Description

This track associates UCSC Genome Browser chromosome names to accession identifiers from the NCBI Reference Sequence Database (RefSeq).

The data were downloaded from the NCBI assembly database.

Credits

The data for this track was prepared by Hiram Clawson.