Affine Alignment
 
Alignment between Pax8 (top ENSMUST00000028355.10 457aa) and Pax2 (bottom ENSMUST00000174490.8 394aa) score 23085

002 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 061
    | +++  ||||+||||| ||||||||+|||||||+|||||||||||||||||||||||||
009 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 068

062 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121
    ||||||||||+|||||||||||||||||+|| +|||||||||||||||||||||+|||||
069 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128

122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181
    |||||||||||||||||||+ |      |   +||||++||+|  |  |  +| +|| ||
129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186

182 INGLLGIAQPGNDNKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDTFSQHHLEALECPF 241
    |||+||| +  |  ||| ++   +    + ||||     ||||| |||+|  ||||+  |
187 INGILGIPR-SNGEKRKREEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVF 245

242 ERQHYPEAYASPSHTKGEQG-LYPLPLLNSALDDGKATLTSSNTP-LGRNLSTHQTYPVV 299
    ||  ||+ + +  | | |||  | || |   ||+ |++|++|  | || |+|  ||||||
246 ERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVV 305

300 ADPHSPFAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVPPFNAFPHAASVY 359
                                                                
306 ------------------------------------------------------------ 305

360 GQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYSHTPYSS 419
             +||+|   ||||||||+| +||||| +| +|||| |||+||| |||  |++
306 ---------TGRDMTSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTA 356

420 YSEAWRFPNSSLLSSPYYYSSTSRPSAPPTSATAFD 455
    |+||||| | +|||||||||+  | |||  +| |+|
357 YNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYD 392