Affine Alignment
 
Alignment between Pax9 (top ENSMUST00000153250.8 342aa) and Pax1 (bottom ENSMUST00000109968.2 446aa) score 19798

001 MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 060
    ||  +|||||||||||||||||||||||||||||||||||||||||||||||||||||||
086 MEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARY 145

061 NETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSV 120
    ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||
146 NETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSV 205

121 SSISRILRNKIGNLAQQGHYDSYKQHQPAPQPALPYNHIYS--YPSPITAAAAKVPTPPG 178
    ||||||||||||+||| | |++ |  || |||||||||||   ||||++    |+ | ||
206 SSISRILRNKIGSLAQPGPYEASK--QPPPQPALPYNHIYQYPYPSPVSPTGTKMGTHPG 263

179 VPAIPGSVALPRTWPSSHSVTDILGIRSITDQ----GVSDSSPYHSPKVEEWSSLGRNNF 234
    ||   | |++||+|||+|||++|||||+  +|      |+ + | |||+|+|+ + |  |
264 VPGSAGHVSIPRSWPSAHSVSNILGIRTFMEQTGALAGSEGAAY-SPKMEDWAGVNRAAF 322

235 PAAAPHAVNGLEKGALEQEAKYGQAPNGLPAVSSFVSASSMAPYPTPAQVSPYMTYSAAP 294
    | +   ||||||| ||| + || |+ + | ||  |+ | +   ||   |   +  |||  
323 PTSP--AVNGLEKPALEADIKYTQSASSLSAVGGFLPACA---YPASNQ---HGVYSAPA 374

295 SGYVA-GHGWQHAGSTPLSPHNC-------DIPASLAFKGMQAAREGS 334
    +||++ |  |  | + ||+||         ++ |++ ||     |||+
375 AGYLSPGPPWPPAQAPPLTPHGAGVAVHGGELAAAMTFK----HREGT 418