Affine Alignment
 
Alignment between Pax8 (top ENSMUST00000028355.10 457aa) and Pax1 (bottom ENSMUST00000109968.2 446aa) score 9386

010 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETG 069
    +| +||||| ||||||||  +| |||+||  |+|||||||||||||||||||| || |||
090 YGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETG 149

070 SIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 129
    || || ||||||+| || ||+ | |||+ +| +|||||||||||+||||   |||||||+
150 SILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSIS 209

130 RIIRTKV------------QQP-----------FNLPMDSCVATKSLSPG-HTLIPSSA- 164
    ||+| |+            +||           +  |  | |+      | |  +| || 
210 RILRNKIGSLAQPGPYEASKQPPPQPALPYNHIYQYPYPSPVSPTGTKMGTHPGVPGSAG 269

165 -VTPPESPQSDSLGSTYSINGLLGI 188
     |+ |      |  | +|++ +|||
270 HVSIPR-----SWPSAHSVSNILGI 289