Affine Alignment
 
Alignment between Pax8 (top ENSMUST00000028355.10 457aa) and Pax4 (bottom ENSMUST00000031718.13 349aa) score 8018

007 RSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 066
    + |   +||||| ||||||||   ||+|| || +|+||||||| |+||+|||||||||||
003 QDGLSSVNQLGGLFVNGRPLPLDTRQQIVQLAIRGMRPCDISRSLKVSNGCVSKILGRYY 062

067 ETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVS 126
     || + |  ||||||++||| || +|   | + | +|||||+ +|  ||+|  |  ||||
063 RTGVLEPKCIGGSKPRLATPAVVARIAQLKDEYPALFAWEIQHQLCTEGLCTQDKAPSVS 122

127 SINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLL 186
    ||||++|  +|+  +|               | + | ||  |  |      | +|  |  
123 SINRVLRA-LQEDQSLHW-------------TQLRSPAVLAPVLP------SPHSNCGAP 162

187 GIAQPGNDNKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDTFSQHHLEALECPFERQHY 246
        ||                              |     ||    ||||  |+|  |
163 RGPHPGT----------------------------SHRNRTIFSPGQAEALEKEFQRGQY 194

247 PEAYASPSHTKGEQGLYPLPLLNSALDDGKATLTSSNTPLGRNLSTHQTYPVVADPHSPF 306
    |++ |     +|+     |    |  +|      |+     |     +    +       
195 PDSVA-----RGK-----LAAATSLPEDTVRVWFSNRRAKWRRQEKLKWEAQLPGASQDL 244

307 AIKQETPELSSSSSTPSSLSSSAFLDLQ-------QVGSGGPAG---------ASVPPF- 349
     + + +| + |+  +| |+ |+|   |+       |+  |   |         | + |+ 
245 TVPKNSPGIISAQQSPGSVPSAALPVLEPLSPSFCQLCCGTAPGRCSSDTSSQAYLQPYW 304

350 ---NAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASS 396
       +  | |+| | +|             | |  +| |    | |   |+
305 DCQSLLPVASSSYVEF-----------AWPCLTTHPVHHLIGGPGQVPST 343