Affine Alignment
 
Alignment between Pax2 (top ENSMUST00000174490.8 394aa) and Pax8 (bottom ENSMUST00000028355.10 457aa) score 23085

009 PFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKI 068
    | +++  ||||+||||| ||||||||+|||||||+|||||||||||||||||||||||||
002 PHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKI 061

069 LGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDT 128
    ||||||||||+|||||||||||||||||+|| +|||||||||||||||||||||+|||||
062 LGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121

129 VPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGS-YS 186
    |||||||||||||||||||+ |      |   +||||++||+|  |  |  +| +|| ||
122 VPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYS 181

187 INGILGIPR-SNGEKRKREEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVF 245
    |||+||| +  |  ||| ++   +    + ||||     ||||| |||+|  ||||+  |
182 INGLLGIAQPGNDNKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDTFSQHHLEALECPF 241

246 ERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASANPELGSNVSGTQTYPVV 305
    ||  ||+ + +  | | |||  | || |   ||+ |++|++|  | || |+|  ||||||
242 ERQHYPEAYASPSHTKGEQG-LYPLPLLNSALDDGKATLTSSNTP-LGRNLSTHQTYPVV 299

306 ------------------------------------------------------------ 305
                                                                
300 ADPHSPFAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVPPFNAFPHAASVY 359

306 ---------TGRDMTSTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTA 356
             +||+|   ||||||||+| +||||| +| +|||| |||+||| |||  |++
360 GQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYSHTPYSS 419

357 YNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYD 392
    |+||||| | +|||||||||+  | |||  +| |+|
420 YSEAWRFPNSSLLSSPYYYSSTSRPSAPPTSATAFD 455