Affine Alignment
 
Alignment between Pax8 (top ENSMUST00000028355.10 457aa) and Pax3 (bottom ENSMUST00000004994.15 484aa) score 10336

009 GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 068
    | | +||||| |+||||||  +| +||++|| |+||| |||||||||||||||| || ||
034 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 093

069 GSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSS 127
    |||||| ||||||| | || | +|| +|||+|| ||+|||||+|| + ||| +|||||||
094 GSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSS 153

128 INRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLG 187
    |+||+|+|                    |      + +   |+ +|+   + +||+|+| 
154 ISRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL- 192

188 IAQPGNDNKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DTFSQHHLEALECPFERQHY 246
            +     ||+ |    |||+      ||  |+  ||+   || ||  ||| ||
193 ------SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHY 243

247 PEAYASP---------------------SHTKGEQGLYPLPLLNSALDDGKATLTSSNTP 285
    |+ |                        +  + + |   |   |  +  |         |
244 PDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLP 303

286 LGRNLSTHQTYPVVADPHSPFAIKQETPELSSSSSTPSSLSSSAFLDLQQVGSGGPAGAS 345
             || +    + | +| |   + ||+   |  |  |         |  |+ | 
304 ---------TYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ-----STIPSNAD 349

346 VPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGS 405
           |     +  +|          | |+ |  | + || | |      ++  | | 
350 SSSAYCLPSTRHGFSSYTD-------SFVPPSGPSNPMN-PTIGNG------LSPQVMGL 395

406 EYSGNAYSHTPYSSYS--------EAWRFPNSSLLSSPYYYSS-----TSRPSAPPTSAT 452
      +     | | + |+        |     ++|      +  +     ||+|  ||| +|
396 LTNHGGVPHQPQTDYALSPLTGGLEPTTTVSASCSQRLEHMKNVDSLPTSQPYCPPTYST 455

453 A 453
    |
456 A 456