Affine Alignment
 
Alignment between Pax5 (top ENSMUST00000014174.13 391aa) and Pax3 (bottom ENSMUST00000004994.15 484aa) score 11191

005 KNYPT---PRTIRT--GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR 059
    +|||    |  + |  | | ||||||||+||||||+ +| +|||+|| |+||| ||||||
018 QNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR 077

060 VSHGCVSKILGRYYETGSIKPGVIGGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRL 118
    |||||||||| || |||||+|| ||||||| | || | +|| ||||+|| ||+|||||+|
078 VSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKL 137

119 LAERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSS 178
    | + ||| +||||||||+||+|+|  +   +                +          + 
138 LKDAVCDRNTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAK 185

179 YSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVL 237
    +|| |||     |   +  + |||   | + +   ||     ||| |    || +||| |
186 HSIDGIL-----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEEL 234

238 DRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLTSPTPADIGSSVPG-- 295
    +| ||| || ||+|  |  +  + ||       +      +    +         +||  
235 ERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGF 294

296 -PQSYPIVTGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGS 344
     | + | +    |+ |+    |  +| |     |        |  |     +| +  | |
295 PPTAMPTLPTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNADSSS 352

345 PYSHPQ----YSSYNDSWRFPN 362
     |  |     +||| ||+  |+
353 AYCLPSTRHGFSSYTDSFVPPS 374