UCSC Mouse Gene Sorter

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UCSC Mouse Gene Sorter

genome assembly search

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#	Name	VisiGene	BLASTP E-Value	Genome Position	Description
1	Pax3	353	0	chr1 78,149,052	Mus musculus paired box 3 (Pax3), transcript variant 2, mRNA. (from RefSeq NM_001159520)
2	Pax7	359	0	chr4 139,785,295	Mus musculus paired box 7 (Pax7), mRNA. (from RefSeq NM_011039)
3	Pax6	362	3e-64	chr2 105,683,132	Mus musculus paired box 6 (Pax6), transcript variant 1, mRNA. (from RefSeq NM_001244198)
4	Pax5	357	9e-59	chr4 44,617,622	Mus musculus paired box 5 (Pax5), mRNA. (from RefSeq NM_008782)
5	Pax2	351	3e-58	chr19 44,796,948	Mus musculus paired box 2 (Pax2), transcript variant 7, mRNA. (from RefSeq NM_011037)
6	Pax8	152931	3e-52	chr2 24,448,079	Mus musculus paired box 8 (Pax8), mRNA. (from RefSeq NM_011040)
7	Pax1	350	1e-51	chr2 147,370,023	Mus musculus paired box 1 (Pax1), mRNA. (from RefSeq NM_008780)
8	Pax9	361	4e-51	chr12 56,702,237	Nucleus (By similarity). (from UniProt Q3V1K1)
9	Pax4	355	4e-48	chr6 28,445,843	Mus musculus paired box 4 (Pax4), transcript variant 1, mRNA. (from RefSeq NM_011038)
10	Arx	141966	2e-25	chrX 93,292,426	Mus musculus aristaless related homeobox (Arx), transcript variant 1, mRNA. (from RefSeq NM_007492)
11	Alx4	440	7e-23	chr2 93,661,861	Mus musculus aristaless-like homeobox 4 (Alx4), mRNA. (from RefSeq NM_007442)
12	Phox2b	155043	1e-22	chr5 67,096,850	Mus musculus paired-like homeobox 2b (Phox2b), mRNA. (from RefSeq NM_008888)
13	Phox2a	178	2e-22	chr7 101,820,519	Mus musculus paired-like homeobox 2a (Phox2a), mRNA. (from RefSeq NM_008887)
14	Alx1	272	3e-22	chr10 103,019,539	Transcriptional activator that acts at a palindromic recognition sequence to enhance the activity of the SV40 and TK promoters. May play a role in chondrocyte differentiation and may also influence cervix development (By similarity). (from UniProt Q8C8B0)
15	Prrxl1	3162	3e-22	chr14 32,615,188	Mus musculus paired related homeobox protein-like 1 (Prrxl1), transcript variant 1, mRNA. (from RefSeq NM_001347590)
16	Rax	183	9e-22	chr18 65,936,862	Mus musculus retina and anterior neural fold homeobox (Rax), mRNA. (from RefSeq NM_013833)
17	Alx3	257	2e-21	chr3 107,600,403	Mus musculus aristaless-like homeobox 3 (Alx3), mRNA. (from RefSeq NM_007441)
18	Pitx3	77131	6e-21	chr19 46,142,005	Mus musculus paired-like homeodomain transcription factor 3 (Pitx3), mRNA. (from RefSeq NM_008852)
19	Vsx1	182403	7e-21	chr2 150,685,031	Mus musculus visual system homeobox 1 (Vsx1), mRNA. (from RefSeq NM_054068)
20	Shox2	253	4e-20	chr3 66,976,776	Mus musculus short stature homeobox 2 (Shox2), transcript variant 1, mRNA. (from RefSeq NM_013665)
21	Uncx	740	1e-19	chr5 139,545,836	Mus musculus UNC homeobox (Uncx), mRNA. (from RefSeq NM_013702)
22	Isx	183736	2e-19	chr8 74,883,339	Mus musculus intestine specific homeobox (Isx), transcript variant 2, mRNA. (from RefSeq NM_027837)
23	Pitx2	261	3e-19	chr3 129,209,734	Mus musculus paired-like homeodomain transcription factor 2 (Pitx2), transcript variant 2, mRNA. (from RefSeq NM_011098)
24	Dmbx1	1721	9e-19	chr4 115,927,522	Mus musculus diencephalon/mesencephalon homeobox 1 (Dmbx1), transcript variant 2, mRNA. (from RefSeq NM_001025567)
25	Pitx1	157299	1e-18	chr13 55,828,238	Mus musculus paired-like homeodomain transcription factor 1 (Pitx1), mRNA. (from RefSeq NM_011097)
26	Crx	164800	3e-17	chr7 15,872,957	Mus musculus cone-rod homeobox (Crx), transcript variant 1, mRNA. (from RefSeq NM_007770)
27	Prrx1	263	6e-17	chr1 163,279,414	Mus musculus paired related homeobox 1 (Prrx1), transcript variant 1, mRNA. (from RefSeq NM_011127)
28	Gsc	152841	1e-16	chr12 104,472,269	Mus musculus goosecoid homeobox (Gsc), mRNA. (from RefSeq NM_010351)
29	Prrx2	266	1e-16	chr2 30,863,155	Mus musculus paired related homeobox 2 (Prrx2), mRNA. (from RefSeq NM_009116)
30	Otx1	177	2e-16	chr11 21,998,189	Mus musculus orthodenticle homeobox 1 (Otx1), mRNA. (from RefSeq NM_011023)
31	Otx2	181	8e-16	chr14 48,665,835	Nucleus (By similarity). (from UniProt Q8VD35)
32	Vsx2	255	0.000000000000001	chr12 84,582,609	Mus musculus visual system homeobox 2 (Vsx2), transcript variant 2, mRNA. (from RefSeq NM_007701)
33	Prop1	187555	0.000000000000008	chr11 50,952,285	Mus musculus paired like homeodomain factor 1 (Prop1), mRNA. (from RefSeq NM_008936)
34	Gsc2	1811	0.00000000000001	chr16 17,914,306	Mus musculus goosecoid homebox 2 (Gsc2), mRNA. (from RefSeq NM_029469)
35	Mixl1	146212	0.00000000000002	chr1 180,695,038	Mus musculus Mix1 homeobox-like 1 (Xenopus laevis) (Mixl1), mRNA. (from RefSeq NM_013729)
36	Otp	259	0.00000000000003	chr13 94,880,366	Mus musculus orthopedia homeobox (Otp), mRNA. (from RefSeq NM_011021)
37	Nobox	179379	0.00000000000006	chr6 43,306,614	Mus musculus NOBOX oogenesis homeobox (Nobox), mRNA. (from RefSeq NM_130869)
38	Sebox	267	0.0000000000007	chr11 78,504,264	Mus musculus SEBOX homeobox (Sebox), mRNA. (from RefSeq NM_008759)
39	Gbx2	157417	0.00000000001	chr1 89,929,567	Mus musculus gastrulation brain homeobox 2 (Gbx2), mRNA. (from RefSeq NM_010262)
40	Barhl1	340	0.00000000003	chr2 28,912,045	Mus musculus BarH like homeobox 1 (Barhl1), transcript variant 1, mRNA. (from RefSeq NM_019446)
41	Nkx1-1	n/a	0.00000000004	chr5 33,432,355	Mus musculus NK1 homeobox 1 (Nkx1-1), mRNA. (from RefSeq NM_011320)
42	Gbx1	155062	0.00000000003	chr5 24,514,979	Mus musculus gastrulation brain homeobox 1 (Gbx1), mRNA. (from RefSeq NM_015739)
43	Lhx2	370	0.00000000004	chr2 38,354,240	Mus musculus LIM homeobox protein 2 (Lhx2), transcript variant 2, mRNA. (from RefSeq NM_001290646)
44	Barhl2	185192	0.00000000004	chr5 106,455,344	Mus musculus BarH like homeobox 2 (Barhl2), mRNA. (from RefSeq NM_001005477)
45	Duxbl1	170995	0.00000000004	chr14 25,986,546	Mus musculus double homeobox B-like 1 (Duxbl1), mRNA. (from RefSeq NM_183389)
46	Duxbl3	170995	0.00000000004	chr14 26,265,847	Mus musculus double homeobox B-like 3 (Duxbl3), mRNA. (from RefSeq NM_001177539)
47	Duxbl2	170995	0.00000000004	chr14 26,126,186	Mus musculus double homeobox B-like 2 (Duxbl2), mRNA. (from RefSeq NM_001177538)
48	Rhox8	n/a	0.00000000009	chrX 37,876,861	Mus musculus reproductive homeobox 8 (Rhox8), mRNA. (from RefSeq NM_001004193)
49	Esx1	271	0.0000000001	chrX 137,117,861	Mus musculus extraembryonic, spermatogenesis, homeobox 1 (Esx1), mRNA. (from RefSeq NM_007957)
50	Nkx1-2	346	0.0000000001	chr7 132,597,257	Mus musculus NK1 homeobox 2 (Nkx1-2), mRNA. (from RefSeq NM_009123)