UCSC Mouse Gene Sorter

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UCSC Mouse Gene Sorter

genome assembly search

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#	Name	VisiGene	BLASTP E-Value	Genome Position	Description
1	Prrxl1	3162	1e-145	chr14 32,615,188	Mus musculus paired related homeobox protein-like 1 (Prrxl1), transcript variant 1, mRNA. (from RefSeq NM_001347590)
2	Alx4	440	9e-28	chr2 93,661,861	Mus musculus aristaless-like homeobox 4 (Alx4), mRNA. (from RefSeq NM_007442)
3	Arx	141966	3e-27	chrX 93,292,426	Mus musculus aristaless related homeobox (Arx), transcript variant 1, mRNA. (from RefSeq NM_007492)
4	Phox2b	155043	1e-24	chr5 67,096,850	Mus musculus paired-like homeobox 2b (Phox2b), mRNA. (from RefSeq NM_008888)
5	Phox2a	178	2e-24	chr7 101,820,519	Mus musculus paired-like homeobox 2a (Phox2a), mRNA. (from RefSeq NM_008887)
6	Alx3	257	1e-23	chr3 107,600,403	Mus musculus aristaless-like homeobox 3 (Alx3), mRNA. (from RefSeq NM_007441)
7	Pax7	359	9e-23	chr4 139,785,295	Mus musculus paired box 7 (Pax7), mRNA. (from RefSeq NM_011039)
8	Pax3	353	1e-22	chr1 78,149,052	Mus musculus paired box 3 (Pax3), transcript variant 2, mRNA. (from RefSeq NM_001159520)
9	Rax	183	3e-22	chr18 65,936,862	Mus musculus retina and anterior neural fold homeobox (Rax), mRNA. (from RefSeq NM_013833)
10	Pitx3	77131	2e-22	chr19 46,142,005	Mus musculus paired-like homeodomain transcription factor 3 (Pitx3), mRNA. (from RefSeq NM_008852)
11	Alx1	272	2e-22	chr10 103,019,539	Transcriptional activator that acts at a palindromic recognition sequence to enhance the activity of the SV40 and TK promoters. May play a role in chondrocyte differentiation and may also influence cervix development (By similarity). (from UniProt Q8C8B0)
12	Pax6	362	1e-21	chr2 105,683,132	Mus musculus paired box 6 (Pax6), transcript variant 1, mRNA. (from RefSeq NM_001244198)
13	Dmbx1	1721	2e-21	chr4 115,927,522	Mus musculus diencephalon/mesencephalon homeobox 1 (Dmbx1), transcript variant 2, mRNA. (from RefSeq NM_001025567)
14	Uncx	740	1e-21	chr5 139,545,836	Mus musculus UNC homeobox (Uncx), mRNA. (from RefSeq NM_013702)
15	Otx1	177	7e-21	chr11 21,998,189	Mus musculus orthodenticle homeobox 1 (Otx1), mRNA. (from RefSeq NM_011023)
16	Otx2	181	1e-20	chr14 48,665,835	Nucleus (By similarity). (from UniProt Q8VD35)
17	Crx	164800	1e-20	chr7 15,872,957	Mus musculus cone-rod homeobox (Crx), transcript variant 1, mRNA. (from RefSeq NM_007770)
18	Shox2	253	2e-20	chr3 66,976,776	Mus musculus short stature homeobox 2 (Shox2), transcript variant 1, mRNA. (from RefSeq NM_013665)
19	Vsx1	182403	3e-20	chr2 150,685,031	Mus musculus visual system homeobox 1 (Vsx1), mRNA. (from RefSeq NM_054068)
20	Pitx2	261	1e-19	chr3 129,209,734	Mus musculus paired-like homeodomain transcription factor 2 (Pitx2), transcript variant 2, mRNA. (from RefSeq NM_011098)
21	Pitx1	157299	3e-19	chr13 55,828,238	Mus musculus paired-like homeodomain transcription factor 1 (Pitx1), mRNA. (from RefSeq NM_011097)
22	Isx	183736	2e-19	chr8 74,883,339	Mus musculus intestine specific homeobox (Isx), transcript variant 2, mRNA. (from RefSeq NM_027837)
23	Prrx1	263	4e-19	chr1 163,279,414	Mus musculus paired related homeobox 1 (Prrx1), transcript variant 1, mRNA. (from RefSeq NM_011127)
24	Prrx2	266	4e-19	chr2 30,863,155	Mus musculus paired related homeobox 2 (Prrx2), mRNA. (from RefSeq NM_009116)
25	Gsc2	1811	8e-19	chr16 17,914,306	Mus musculus goosecoid homebox 2 (Gsc2), mRNA. (from RefSeq NM_029469)
26	Gsc	152841	1e-18	chr12 104,472,269	Mus musculus goosecoid homeobox (Gsc), mRNA. (from RefSeq NM_010351)
27	Vsx2	255	9e-17	chr12 84,582,609	Mus musculus visual system homeobox 2 (Vsx2), transcript variant 2, mRNA. (from RefSeq NM_007701)
28	Prop1	187555	0.000000000000001	chr11 50,952,285	Mus musculus paired like homeodomain factor 1 (Prop1), mRNA. (from RefSeq NM_008936)
29	Otp	259	0.000000000000005	chr13 94,880,366	Mus musculus orthopedia homeobox (Otp), mRNA. (from RefSeq NM_011021)
30	Mixl1	146212	0.00000000000002	chr1 180,695,038	Mus musculus Mix1 homeobox-like 1 (Xenopus laevis) (Mixl1), mRNA. (from RefSeq NM_013729)
31	Sebox	267	0.00000000000004	chr11 78,504,264	Mus musculus SEBOX homeobox (Sebox), mRNA. (from RefSeq NM_008759)
32	Nobox	179379	0.00000000000007	chr6 43,306,614	Mus musculus NOBOX oogenesis homeobox (Nobox), mRNA. (from RefSeq NM_130869)
33	Nkx1-1	n/a	0.00000000000008	chr5 33,432,355	Mus musculus NK1 homeobox 1 (Nkx1-1), mRNA. (from RefSeq NM_011320)
34	Hesx1	407	0.0000000000003	chr14 26,998,370	Required for the normal development of the forebrain, eyes and other anterior structures such as the olfactory placodes and pituitary gland. Possible transcriptional repressor. Binds to the palindromic PIII sequence, 5'-AGCTTGAGTCTAATTGAATTAACTGTAC-3'. HESX1 and PROP1 bind as heterodimers on this palindromic site, and, in vitro, HESX1 can antagonize PROP1 activation. (from UniProt Q61658)
35	Nkx1-2	346	0.0000000000009	chr7 132,597,257	Mus musculus NK1 homeobox 2 (Nkx1-2), mRNA. (from RefSeq NM_009123)
36	Noto	n/a	0.000000000001	chr6 85,426,381	Mus musculus notochord homeobox (Noto), mRNA. (from RefSeq NM_001007472)
37	Meox2	334	0.000000000004	chr12 37,144,037	Mus musculus mesenchyme homeobox 2 (Meox2), mRNA. (from RefSeq NM_008584)
38	Meox1	333	0.000000000009	chr11 101,885,942	Mus musculus mesenchyme homeobox 1 (Meox1), mRNA. (from RefSeq NM_010791)
39	Rhox7b	n/a	0.00000000001	chrX 37,891,835	Nucleus (By similarity). (from UniProt A6PW38)
40	Pax4	355	0.00000000002	chr6 28,445,843	Mus musculus paired box 4 (Pax4), transcript variant 1, mRNA. (from RefSeq NM_011038)
41	Gbx2	157417	0.00000000004	chr1 89,929,567	Mus musculus gastrulation brain homeobox 2 (Gbx2), mRNA. (from RefSeq NM_010262)
42	Nkx6-2	405	0.00000000004	chr7 139,582,005	Mus musculus NK6 homeobox 2 (Nkx6-2), transcript variant 1, mRNA. (from RefSeq NM_183248)
43	Rhox8	n/a	0.00000000006	chrX 37,876,861	Mus musculus reproductive homeobox 8 (Rhox8), mRNA. (from RefSeq NM_001004193)
44	Rhox13	n/a	0.00000000007	chrX 38,125,593	Mus musculus reproductive homeobox 13 (Rhox13), mRNA. (from RefSeq NM_001185002)
45	Nkx6-1	145556	0.00000000009	chr5 101,661,567	Mus musculus NK6 homeobox 1 (Nkx6-1), mRNA. (from RefSeq NM_144955)
46	Nkx6-3	172780	0.0000000001	chr8 23,156,108	Mus musculus NK6 homeobox 3 (Nkx6-3), mRNA. (from RefSeq NM_029002)
47	Esx1	271	0.0000000002	chrX 137,117,861	Mus musculus extraembryonic, spermatogenesis, homeobox 1 (Esx1), mRNA. (from RefSeq NM_007957)
48	Gbx1	155062	0.0000000002	chr5 24,514,979	Mus musculus gastrulation brain homeobox 1 (Gbx1), mRNA. (from RefSeq NM_015739)
49	Msx2	326	0.0000000002	chr13 53,469,979	Mus musculus msh homeobox 2 (Msx2), mRNA. (from RefSeq NM_013601)
50	Barhl1	340	0.0000000004	chr2 28,912,045	Mus musculus BarH like homeobox 1 (Barhl1), transcript variant 1, mRNA. (from RefSeq NM_019446)