Mouse Gene Prim1 (ENSMUST00000026461.8) from GENCODE VM30
Description: Mus musculus DNA primase, p49 subunit (Prim1), mRNA. (from RefSeq NM_008921)
Gencode Transcript: ENSMUST00000026461.8
Gencode Gene: ENSMUSG00000025395.15
Transcript (Including UTRs)
Position: mm39 chr10:127,851,041-127,865,906 Size: 14,866 Total Exon Count: 13 Strand: +
Position: mm39 chr10:127,851,118-127,865,654 Size: 14,537 Coding Exon Count: 13
Data last updated at UCSC: 2022-06-02 18:33:23
Sequence and Links to Tools and Databases
Comments and Description Text from UniProtKB
DESCRIPTION: RecName: Full=DNA primase; EC=2.7.7.-;
SIMILARITY: Belongs to the eukaryotic-type primase small subunit family.
Comparative Toxicogenomics Database (CTD)
The following chemicals interact with this gene
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mRNA Secondary Structure of 3' and 5' UTRs
The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.
Protein Domain and Structure Information
InterPro Domains: Graphical view of domain structure IPR002755 - DNA_primase_S
IPR014052 - DNA_primase_ssu_euk/arc
Pfam Domains: PF01896 - DNA primase small subunit
ModBase Predicted Comparative 3D Structure on Q5FW94
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.
Orthologous Genes in Other Species
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Gene Ontology (GO) Annotations with Structured Vocabulary
Descriptions from all associated GenBank mRNAs
J04620 - Mouse primase p49 subunit (priA) mRNA, complete cds. BC089544 - Mus musculus DNA primase, p49 subunit, mRNA (cDNA clone MGC:107288 IMAGE:30504228), complete cds. AK089063 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430038C03 product:DNA primase, p49 subunit, full insert sequence. AK160831 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:3426401K05 product:DNA primase, p49 subunit, full insert sequence. AK088557 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430020E06 product:DNA primase, p49 subunit, full insert sequence. D13544 - Mus musculus mRNA for primase small subunit, complete cds. AK169632 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430002P10 product:DNA primase, p49 subunit, full insert sequence. AK133878 - Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730478J06 product:DNA primase, p49 subunit, full insert sequence. AK011456 - Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610019C06 product:DNA primase, p49 subunit, full insert sequence. AK178164 - Mus musculus cDNA, clone:Y0G0105K17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000047864, based on BLAT search.
Other Names for This Gene
Alternate Gene Symbols: ENSMUST00000026461.1, ENSMUST00000026461.2, ENSMUST00000026461.3, ENSMUST00000026461.4, ENSMUST00000026461.5, ENSMUST00000026461.6, ENSMUST00000026461.7, NM_008921, Q5FW94, Q5FW94_MOUSE, uc011xpx.1, uc011xpx.2, uc011xpx.3, uc011xpx.4 UCSC ID: ENSMUST00000026461.8 RefSeq Accession: NM_008921
Methods, Credits, and Use Restrictions
for details on how this gene model was made and data restrictions if any.