Mouse Gene Slc25a28 (ENSMUST00000046038.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 25, member 28 (Slc25a28), transcript variant 1, mRNA. (from RefSeq NM_145156)
Gencode Transcript: ENSMUST00000046038.8
Gencode Gene: ENSMUSG00000040414.8
Transcript (Including UTRs)
   Position: mm10 chr19:43,663,801-43,674,881 Size: 11,081 Total Exon Count: 4 Strand: -
Coding Region
   Position: mm10 chr19:43,664,126-43,674,766 Size: 10,641 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:43,663,801-43,674,881)mRNA (may differ from genome)Protein (364 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsMGIPubMed
ReactomeSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: MFRN2_MOUSE
DESCRIPTION: RecName: Full=Mitoferrin-2; AltName: Full=Mitochondrial RNA-splicing protein 3/4 homolog; Short=MRS3/4; AltName: Full=Mitochondrial iron transporter 2; AltName: Full=Solute carrier family 25 member 28;
FUNCTION: Mitochondrial iron transporter that mediates iron uptake. Probably required for heme synthesis of hemoproteins and Fe-S cluster assembly in non-erythroid cells. The iron delivered into the mitochondria, presumably as Fe(2+), is then probably delivered to ferrochelatase to catalyze Fe(2+) incorporation into protoprophyrin IX to make heme (Probable).
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein. Note=Isoform 1 and isoform 2 are both localized in the mitochondrion.
TISSUE SPECIFICITY: Ubiquitously expressed at low level. Expressed at higher level in heart, liver, kidney and testis. Expression does not vary during erythroid maturation.
SIMILARITY: Belongs to the mitochondrial carrier family.
SIMILARITY: Contains 3 Solcar repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -69.30115-0.603 Picture PostScript Text
3' UTR -113.50325-0.349 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on Q8R0Z5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
      
      
 RGDEnsembl   
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005381 iron ion transmembrane transporter activity
GO:0015093 ferrous iron transmembrane transporter activity

Biological Process:
GO:0006811 ion transport
GO:0006839 mitochondrial transport
GO:0048250 mitochondrial iron ion transport
GO:0055072 iron ion homeostasis
GO:1903874 ferrous iron transmembrane transport

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC023172 - Mus musculus solute carrier family 25, member 28, mRNA (cDNA clone IMAGE:4949779), complete cds.
AF377993 - Mus musculus MRS3/4 (Mrs3/4) mRNA, complete cds; alternatively spliced.
AF377994 - Mus musculus MRS3/4 (Mrs3/4) mRNA, partial cds; alternatively spliced.
BC025908 - Mus musculus solute carrier family 25, member 28, mRNA (cDNA clone MGC:32461 IMAGE:5043992), complete cds.
AK034173 - Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330161F06 product:NPD016 homolog [Homo sapiens], full insert sequence.
AK155044 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630118H06 product:solute carrier family 25, member 28, full insert sequence.
AK008810 - Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210403D18 product:inferred: NPD016 {Homo sapiens}, full insert sequence.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8R0Z5 (Reactome details) participates in the following event(s):

R-MMU-1362412 Mitoferrin Transports Iron Across the Mitochondrial Inner Membrane

-  Other Names for This Gene
  Alternate Gene Symbols: Mfrn2, MFRN2_MOUSE, NM_145156, Q8K4J8, Q8K4J9, Q8R0Z5, Q8R578, uc008hon.1, uc008hon.2, uc008hon.3, uc008hon.4
UCSC ID: uc008hon.4
RefSeq Accession: NM_145156
Protein: Q8R0Z5 (aka MFRN2_MOUSE)
CCDS: CCDS29834.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.