Mouse Gene Slc25a48 (ENSMUST00000021971.5) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 25, member 48 (Slc25a48), mRNA. (from RefSeq NM_177809)
Gencode Transcript: ENSMUST00000021971.5
Gencode Gene: ENSMUSG00000021509.5
Transcript (Including UTRs)
   Position: mm10 chr13:56,438,355-56,474,239 Size: 35,885 Total Exon Count: 8 Strand: +
Coding Region
   Position: mm10 chr13:56,438,490-56,470,472 Size: 31,983 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:56,438,355-56,474,239)mRNA (may differ from genome)Protein (306 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: S2548_MOUSE
DESCRIPTION: RecName: Full=Solute carrier family 25 member 48;
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein (By similarity).
SIMILARITY: Belongs to the mitochondrial carrier family.
SIMILARITY: Contains 3 Solcar repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -63.50135-0.470 Picture PostScript Text
3' UTR -728.802318-0.314 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on Q8BW66
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl   
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0022857 transmembrane transporter activity
GO:0000064 L-ornithine transmembrane transporter activity

Biological Process:
GO:0006839 mitochondrial transport
GO:0055085 transmembrane transport

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK054181 - Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230025K15 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence.
BC107250 - Mus musculus expressed sequence AU042651, mRNA (cDNA clone MGC:130189 IMAGE:40052351), complete cds.
BC107251 - Mus musculus expressed sequence AU042651, mRNA (cDNA clone MGC:130190 IMAGE:40052352), complete cds.
AB343520 - Mus musculus non-coding RNA, oocyte_clustered_small_RNA8721, complete sequence.
AB343521 - Mus musculus non-coding RNA, oocyte_clustered_small_RNA8722, complete sequence.
AB343522 - Mus musculus non-coding RNA, oocyte_clustered_small_RNA8723, complete sequence.
AB343523 - Mus musculus non-coding RNA, oocyte_clustered_small_RNA8724, complete sequence.
BC051535 - Mus musculus expressed sequence AW011956, mRNA (cDNA clone IMAGE:3467217).
AB343524 - Mus musculus non-coding RNA, oocyte_clustered_small_RNA8725, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_177809, Q3KNJ4, Q8BW66, S2548_MOUSE, uc007qsn.1, uc007qsn.2, uc007qsn.3
UCSC ID: uc007qsn.3
RefSeq Accession: NM_177809
Protein: Q8BW66 (aka S2548_MOUSE)
CCDS: CCDS26561.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.