Mouse Gene Slc25a3 (ENSMUST00000076694.12) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 (Slc25a3), mRNA. (from RefSeq NM_133668)
Gencode Transcript: ENSMUST00000076694.12
Gencode Gene: ENSMUSG00000061904.12
Transcript (Including UTRs)
   Position: mm10 chr10:91,116,574-91,124,059 Size: 7,486 Total Exon Count: 8 Strand: -
Coding Region
   Position: mm10 chr10:91,116,964-91,123,702 Size: 6,739 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:91,116,574-91,124,059)mRNA (may differ from genome)Protein (357 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaAlphaFoldBioGPS
EnsemblEntrez GeneExonPrimerGeneCardsMGIPubMed
SOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: MPCP_MOUSE
DESCRIPTION: RecName: Full=Phosphate carrier protein, mitochondrial; AltName: Full=Phosphate transport protein; Short=PTP; AltName: Full=Solute carrier family 25 member 3; Flags: Precursor;
FUNCTION: Transport of phosphate groups from the cytosol to mitochondrial matrix. Phosphate is cotransported with H(+) (By similarity).
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein.
SIMILARITY: Belongs to the mitochondrial carrier family.
SIMILARITY: Contains 3 Solcar repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -69.80148-0.472 Picture PostScript Text
3' UTR -74.00390-0.190 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on Q8VEM8
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0015114 phosphate ion transmembrane transporter activity
GO:0015293 symporter activity
GO:0044877 macromolecular complex binding

Biological Process:
GO:0006839 mitochondrial transport
GO:0035435 phosphate ion transmembrane transport
GO:0055085 transmembrane transport

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0043209 myelin sheath


-  Descriptions from all associated GenBank mRNAs
  AK037421 - Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130017E23 product:solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3, full insert sequence.
AK077274 - Mus musculus 11 days pregnant adult female ovary and uterus cDNA, RIKEN full-length enriched library, clone:5033401K03 product:solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3, full insert sequence.
AK151887 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830041L23 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK198800 - Mus musculus cDNA, clone:Y1G0129D17, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK190863 - Mus musculus cDNA, clone:Y1G0104B01, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK193469 - Mus musculus cDNA, clone:Y1G0112G07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK193521 - Mus musculus cDNA, clone:Y1G0112J07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
BC004030 - Mus musculus solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3, mRNA (cDNA clone IMAGE:3495301).
BC018161 - Mus musculus solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3, mRNA (cDNA clone MGC:25685 IMAGE:2650436), complete cds.
AK200877 - Mus musculus cDNA, clone:Y1G0136E10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK152341 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830063K17 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK168580 - Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length enriched library, clone:I920036J16 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK152006 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830045A13 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK150641 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830013B07 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK150729 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830014F09 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK151088 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830022N04 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK151518 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830031E15 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK167197 - Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0038I24 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK201515 - Mus musculus cDNA, clone:Y1G0138H22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK215444 - Mus musculus cDNA, clone:Y2G0135A22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK152713 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830083A20 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK200787 - Mus musculus cDNA, clone:Y1G0135P09, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK191542 - Mus musculus cDNA, clone:Y1G0106D13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK191799 - Mus musculus cDNA, clone:Y1G0107A02, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK194450 - Mus musculus cDNA, clone:Y1G0115F24, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK200191 - Mus musculus cDNA, clone:Y1G0133L15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK200546 - Mus musculus cDNA, clone:Y1G0134O09, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK202780 - Mus musculus cDNA, clone:Y1G0142K23, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK203930 - Mus musculus cDNA, clone:Y1G0146L10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK213202 - Mus musculus cDNA, clone:Y2G0127I19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK196032 - Mus musculus cDNA, clone:Y1G0120H13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK088013 - Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430002E03 product:solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3, full insert sequence.
AK152292 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830058M05 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK150870 - Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830016H09 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK168129 - Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, clone:I730059K20 product:solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, full insert sequence.
AK077723 - Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730556H19 product:solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3, full insert sequence.
AK184040 - Mus musculus cDNA, clone:Y0G0128F18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK194768 - Mus musculus cDNA, clone:Y1G0116F24, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK203032 - Mus musculus cDNA, clone:Y1G0143I10, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK192035 - Mus musculus cDNA, clone:Y1G0107K17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK196211 - Mus musculus cDNA, clone:Y1G0121C12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK202789 - Mus musculus cDNA, clone:Y1G0142L08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK205843 - Mus musculus cDNA, clone:Y2G0102P12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK208229 - Mus musculus cDNA, clone:Y2G0110I05, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK212824 - Mus musculus cDNA, clone:Y2G0126D19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK214302 - Mus musculus cDNA, clone:Y2G0131F18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK215325 - Mus musculus cDNA, clone:Y2G0134K21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK215656 - Mus musculus cDNA, clone:Y2G0135L22, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK182292 - Mus musculus cDNA, clone:Y0G0121H20, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK195219 - Mus musculus cDNA, clone:Y1G0117M03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK180258 - Mus musculus cDNA, clone:Y0G0113H21, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK188364 - Mus musculus cDNA, clone:Y0G0144O12, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK216642 - Mus musculus cDNA, clone:Y2G0139A16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK212727 - Mus musculus cDNA, clone:Y2G0125O17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.
AK028313 - Mus musculus adult male brain cDNA, RIKEN full-length enriched library, clone:3526402M16 product:solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 3, full insert sequence.
AK203521 - Mus musculus cDNA, clone:Y1G0145D03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000020142, based on BLAT search.

-  Other Names for This Gene
  Alternate Gene Symbols: MPCP_MOUSE, NM_133668, Q542V7, Q8VEM8, uc007gtn.1, uc007gtn.2
UCSC ID: uc007gtn.2
RefSeq Accession: NM_133668
Protein: Q8VEM8 (aka MPCP_MOUSE)
CCDS: CCDS24121.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.