Mouse Gene Pax2 (ENSMUST00000174490.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus paired box 2 (Pax2), transcript variant 7, mRNA. (from RefSeq NM_011037)
Gencode Transcript: ENSMUST00000174490.8
Gencode Gene: ENSMUSG00000004231.15
Transcript (Including UTRs)
   Position: mm10 chr19:44,756,045-44,837,851 Size: 81,807 Total Exon Count: 10 Strand: +
Coding Region
   Position: mm10 chr19:44,757,394-44,836,027 Size: 78,634 Coding Exon Count: 10 

Page IndexSequence and LinksPrimersCTDRNA StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

+  Sequence and Links to Tools and Databases
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-  Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

+  Comparative Toxicogenomics Database (CTD)
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-  mRNA Secondary Structure of 3' and 5' UTRs
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -623.901349-0.462 Picture PostScript Text
3' UTR -628.001824-0.344 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologGenome BrowserNo orthologNo ortholog
Gene Details     
Gene Sorter     
 Protein Sequence Protein Sequence  
 Alignment Alignment  

-  Descriptions from all associated GenBank mRNAs
  LF204748 - JP 2014500723-A/12251: Polycomb-Associated Non-Coding RNAs.
BC150484 - Mus musculus paired box gene 2, mRNA (cDNA clone MGC:161329 IMAGE:40142579), complete cds.
BC148232 - Mus musculus paired box gene 2, mRNA (cDNA clone MGC:161328 IMAGE:40142573), complete cds.
MA440325 - JP 2018138019-A/12251: Polycomb-Associated Non-Coding RNAs.
LF201797 - JP 2014500723-A/9300: Polycomb-Associated Non-Coding RNAs.
BC031455 - Mus musculus, Similar to proline rich protein 2, clone IMAGE:4235142, mRNA.
LF258365 - JP 2014500723-A/65868: Polycomb-Associated Non-Coding RNAs.
MA437374 - JP 2018138019-A/9300: Polycomb-Associated Non-Coding RNAs.
MA493942 - JP 2018138019-A/65868: Polycomb-Associated Non-Coding RNAs.

+  Other Names for This Gene
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+  Gene Model Information
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+  Methods, Credits, and Use Restrictions
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