Mouse Gene Prrxl1 (ENSMUST00000189022.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus paired related homeobox protein-like 1 (Prrxl1), transcript variant 1, mRNA. (from RefSeq NM_001347590)
Gencode Transcript: ENSMUST00000189022.7
Gencode Gene: ENSMUSG00000041730.14
Transcript (Including UTRs)
   Position: mm10 chr14:32,599,408-32,630,969 Size: 31,562 Total Exon Count: 7 Strand: +
Coding Region
   Position: mm10 chr14:32,600,031-32,629,000 Size: 28,970 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:32,599,408-32,630,969)mRNA (may differ from genome)Protein (263 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedSOURCEUniProtKB

+  Comments and Description Text from UniProtKB
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-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  mRNA Secondary Structure of 3' and 5' UTRs
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+  Protein Domain and Structure Information
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

+  Gene Ontology (GO) Annotations with Structured Vocabulary
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-  Descriptions from all associated GenBank mRNAs
  EU670678 - Mus musculus paired related homeobox protein-like 1b (Prrxl1) mRNA, complete cds, alternatively spliced.
AK039633 - Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330076B20 product:HOMEOBOX PROTEIN DRG11 homolog [Rattus norvegicus], full insert sequence.
BC132613 - Mus musculus paired related homeobox protein-like 1, mRNA (cDNA clone MGC:164244 IMAGE:40130890), complete cds.
BC145917 - Mus musculus paired related homeobox protein-like 1, mRNA (cDNA clone MGC:175804 IMAGE:40131220), complete cds.
BC171926 - Mus musculus paired related homeobox protein-like 1, mRNA (cDNA clone MGC:178921 IMAGE:9053913), complete cds.
EU670677 - Mus musculus paired related homeobox protein-like 1 (Prrxl1) mRNA, complete cds, alternatively spliced.
AY116506 - Mus musculus transcription factor DRG11 mRNA, partial cds.

+  Other Names for This Gene
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-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

+  Methods, Credits, and Use Restrictions
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