Mouse Gene Pitx1 (ENSMUST00000021968.6) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus paired-like homeodomain transcription factor 1 (Pitx1), mRNA. (from RefSeq NM_011097)
Gencode Transcript: ENSMUST00000021968.6
Gencode Gene: ENSMUSG00000021506.7
Transcript (Including UTRs)
   Position: mm10 chr13:55,825,051-55,831,425 Size: 6,375 Total Exon Count: 3 Strand: -
Coding Region
   Position: mm10 chr13:55,826,069-55,830,940 Size: 4,872 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr13:55,825,051-55,831,425)mRNA (may differ from genome)Protein (315 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
MGIPubMedStanford SOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
DESCRIPTION: SubName: Full=Paired-like homeodomain transcription factor 1, isoform CRA_a;
SUBCELLULAR LOCATION: Nucleus (By similarity).
SIMILARITY: Contains 1 homeobox DNA-binding domain.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  mRNA Secondary Structure of 3' and 5' UTRs
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+  Protein Domain and Structure Information
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
GenBankRGDEnsembl WormBase 
Protein SequenceProtein Sequence  Protein Sequence 
AlignmentAlignment  Alignment 

+  Gene Ontology (GO) Annotations with Structured Vocabulary
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-  Descriptions from all associated GenBank mRNAs
  LF199560 - JP 2014500723-A/7063: Polycomb-Associated Non-Coding RNAs.
LF204997 - JP 2014500723-A/12500: Polycomb-Associated Non-Coding RNAs.
U71206 - Mus musculus Ptx1 mRNA, complete cds.
AK142455 - Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530019K18 product:paired-like homeodomain transcription factor 1, full insert sequence.
BC012696 - Mus musculus paired-like homeodomain transcription factor 1, mRNA (cDNA clone MGC:13954 IMAGE:4192818), complete cds.
U54499 - Mus musculus homeodomain protein POTX mRNA, complete cds.
U70371 - Mus musculus hindlimb expressed homeobox protein backfoot (Bft) mRNA, partial cds.
LF203163 - JP 2014500723-A/10666: Polycomb-Associated Non-Coding RNAs.
MA435137 - JP 2018138019-A/7063: Polycomb-Associated Non-Coding RNAs.
MA440574 - JP 2018138019-A/12500: Polycomb-Associated Non-Coding RNAs.
MA438740 - JP 2018138019-A/10666: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: mCG_3183, NM_011097, Q3UQH0, Q3UQH0_MOUSE, uc007qsd.1, uc007qsd.2
UCSC ID: uc007qsd.2
RefSeq Accession: NM_011097
Protein: Q3UQH0 CCDS: CCDS26556.1

+  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.