Mouse Gene Phox2b (ENSMUST00000012664.10) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus paired-like homeobox 2b (Phox2b), mRNA. (from RefSeq NM_008888)
Gencode Transcript: ENSMUST00000012664.10
Gencode Gene: ENSMUSG00000012520.10
Transcript (Including UTRs)
   Position: mm10 chr5:67,094,399-67,099,301 Size: 4,903 Total Exon Count: 3 Strand: -
Coding Region
   Position: mm10 chr5:67,096,107-67,098,941 Size: 2,835 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:67,094,399-67,099,301)mRNA (may differ from genome)Protein (314 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
MGIPubMedStanford SOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: PHX2B_MOUSE
DESCRIPTION: RecName: Full=Paired mesoderm homeobox protein 2B; AltName: Full=Neuroblastoma Phox; Short=NBPhox; AltName: Full=PHOX2B homeodomain protein; AltName: Full=Paired-like homeobox 2B;
SUBUNIT: Interacts with TRIM11.
SUBCELLULAR LOCATION: Nucleus (By similarity).
SIMILARITY: Belongs to the paired homeobox family.
SIMILARITY: Contains 1 homeobox DNA-binding domain.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  mRNA Secondary Structure of 3' and 5' UTRs
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+  Protein Domain and Structure Information
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologGenome BrowserGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
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 Protein Sequence Protein SequenceProtein Sequence 
 Alignment AlignmentAlignment 

+  Gene Ontology (GO) Annotations with Structured Vocabulary
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-  Descriptions from all associated GenBank mRNAs
  BC079610 - Mus musculus paired-like homeobox 2b, mRNA (cDNA clone MGC:90726 IMAGE:30360139), complete cds.
AK148638 - Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120428I23 product:hypothetical protein, full insert sequence.
Y14493 - Mus musculus mRNA for PHOX2b protein.
AK052579 - Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530038E02 product:paired-like homeobox 2b, full insert sequence.
LF203643 - JP 2014500723-A/11146: Polycomb-Associated Non-Coding RNAs.
LF203645 - JP 2014500723-A/11148: Polycomb-Associated Non-Coding RNAs.
MA439220 - JP 2018138019-A/11146: Polycomb-Associated Non-Coding RNAs.
MA439222 - JP 2018138019-A/11148: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_008888, O35690, PHX2B_MOUSE, Pmx2b, uc008xpm.1, uc008xpm.2
UCSC ID: uc008xpm.2
RefSeq Accession: NM_008888
Protein: O35690 (aka PHX2B_MOUSE)
CCDS: CCDS19316.1

+  Gene Model Information
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-  Methods, Credits, and Use Restrictions
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