Mouse Gene Sebox (ENSMUST00000001130.7) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus SEBOX homeobox (Sebox), mRNA. (from RefSeq NM_008759)
Gencode Transcript: ENSMUST00000001130.7
Gencode Gene: ENSMUSG00000001103.7
Transcript (Including UTRs)
   Position: mm10 chr11:78,503,447-78,505,081 Size: 1,635 Total Exon Count: 3 Strand: +
Coding Region
   Position: mm10 chr11:78,503,550-78,504,406 Size: 857 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:78,503,447-78,505,081)mRNA (may differ from genome)Protein (190 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
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-  Comments and Description Text from UniProtKB
  ID: SEBOX_MOUSE
DESCRIPTION: RecName: Full=Homeobox protein SEBOX; AltName: Full=Homeobox OG-9; AltName: Full=Skin-, embryo-, brain- and oocyte-specific homeobox;
FUNCTION: Probable transcription factor involved in the control of specification of mesoderm and endoderm (By similarity).
SUBCELLULAR LOCATION: Nucleus (By similarity).
TISSUE SPECIFICITY: Expressed in brain, skin, ovary and liver. Also expressed in maturing oocytes, eggs, zygotes and 2-cell embryos, but not 4-cell embryos.
DEVELOPMENTAL STAGE: Expressed in embryos from day 7. Expression is low in 12 day embryos and higher in 18 and 19 day embryos.
SIMILARITY: Belongs to the paired homeobox family.
SIMILARITY: Contains 1 homeobox DNA-binding domain.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  mRNA Secondary Structure of 3' and 5' UTRs
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+  Protein Domain and Structure Information
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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 Protein Sequence    
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+  Gene Ontology (GO) Annotations with Structured Vocabulary
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-  Descriptions from all associated GenBank mRNAs
  AK139838 - Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020024M12 product:OG9 homeobox gene, full insert sequence.
AK143429 - Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330036M09 product:OG9 homeobox gene, full insert sequence.
BC098184 - Mus musculus SEBOX homeobox, mRNA (cDNA clone MGC:106355 IMAGE:5367903), complete cds.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_008759, Og9x, P70368, SEBOX_MOUSE, uc007kjm.1, uc007kjm.2, uc007kjm.3
UCSC ID: uc007kjm.3
RefSeq Accession: NM_008759
Protein: P70368 (aka SEBOX_MOUSE)
CCDS: CCDS25107.1

+  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.