Mouse Gene Pax9 (ENSMUST00000153250.8) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Nucleus (By similarity). (from UniProt Q3V1K1)
RefSeq Summary (NM_011041): This gene is a member of the paired box (PAX) family of transcription factors. Members of this gene family typically contain a paired box domain, an octapeptide, and a paired-type homeodomain. These genes play critical roles during fetal development and cancer growth. Mice lacking this gene exhibit impaired development of organs, musculature and the skeleton, including absent and abnormally developed teeth, and neonatal lethality. Mutations in the human gene are associated with selective tooth agenesis-3. [provided by RefSeq, Sep 2015]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.
Gencode Transcript: ENSMUST00000153250.8
Gencode Gene: ENSMUSG00000001497.18
Transcript (Including UTRs)
   Position: mm10 chr12:56,691,767-56,712,707 Size: 20,941 Total Exon Count: 5 Strand: +
Coding Region
   Position: mm10 chr12:56,695,861-56,709,907 Size: 14,047 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

+  Sequence and Links to Tools and Databases
  Press "+" in the title bar above to open this section.

+  Comments and Description Text from UniProtKB
  Press "+" in the title bar above to open this section.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  mRNA Secondary Structure of 3' and 5' UTRs
  Press "+" in the title bar above to open this section.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009057 - Homeodomain-like
IPR001523 - Paired_dom
IPR011991 - WHTH_trsnscrt_rep_DNA-bd

Pfam Domains:
PF00292 - 'Paired box' domain
PF13384 - Homeodomain-like domain

SCOP Domains:
46689 - Homeodomain-like

ModBase Predicted Comparative 3D Structure on Q3V1K1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
 RGD    
 Protein Sequence    
 Alignment    

+  Gene Ontology (GO) Annotations with Structured Vocabulary
  Press "+" in the title bar above to open this section.

-  Descriptions from all associated GenBank mRNAs
  LF203952 - JP 2014500723-A/11455: Polycomb-Associated Non-Coding RNAs.
LF199155 - JP 2014500723-A/6658: Polycomb-Associated Non-Coding RNAs.
AK132404 - Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched library, clone:4432412B16 product:paired box gene 9, full insert sequence.
AK034985 - Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430070E09 product:paired box gene 9, full insert sequence.
X84000 - M.musculus mRNA for Pax9.
BC005794 - Mus musculus paired box gene 9, mRNA (cDNA clone MGC:11500 IMAGE:3707718), complete cds.
BC006930 - Mus musculus paired box gene 9, mRNA (cDNA clone IMAGE:3599040), with apparent retained intron.
MA439529 - JP 2018138019-A/11455: Polycomb-Associated Non-Coding RNAs.
MA434732 - JP 2018138019-A/6658: Polycomb-Associated Non-Coding RNAs.

+  Other Names for This Gene
  Press "+" in the title bar above to open this section.

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.