Mouse Gene Slc25a22 (ENSMUST00000019226.13) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 25 (mitochondrial carrier, glutamate), member 22 (Slc25a22), transcript variant 1, mRNA. (from RefSeq NM_026646)
Gencode Transcript: ENSMUST00000019226.13
Gencode Gene: ENSMUSG00000019082.18
Transcript (Including UTRs)
   Position: mm10 chr7:141,429,744-141,437,892 Size: 8,149 Total Exon Count: 10 Strand: -
Coding Region
   Position: mm10 chr7:141,431,105-141,434,175 Size: 3,071 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:141,429,744-141,437,892)mRNA (may differ from genome)Protein (323 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: GHC1_MOUSE
DESCRIPTION: RecName: Full=Mitochondrial glutamate carrier 1; Short=GC-1; AltName: Full=Glutamate/H(+) symporter 1; AltName: Full=Solute carrier family 25 member 22;
FUNCTION: Involved in the transport of glutamate across the inner mitochondrial membrane. Glutamate is cotransported with H(+) (By similarity).
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein (Potential).
SIMILARITY: Belongs to the mitochondrial carrier family.
SIMILARITY: Contains 3 Solcar repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -199.90478-0.418 Picture PostScript Text
3' UTR -515.401361-0.379 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002067 - Mit_carrier
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on Q9D6M3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
GenBank     
Protein Sequence     
Alignment     

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005313 L-glutamate transmembrane transporter activity
GO:0005314 high-affinity glutamate transmembrane transporter activity
GO:0015293 symporter activity

Biological Process:
GO:0006839 mitochondrial transport
GO:0015813 L-glutamate transport
GO:0055085 transmembrane transport

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  LF196693 - JP 2014500723-A/4196: Polycomb-Associated Non-Coding RNAs.
BC037949 - Mus musculus solute carrier family 25 (mitochondrial carrier, glutamate), member 22, mRNA (cDNA clone MGC:40783 IMAGE:5367108), complete cds.
BC050887 - Mus musculus solute carrier family 25 (mitochondrial carrier, glutamate), member 22, mRNA (cDNA clone IMAGE:5708744), complete cds.
AK162400 - Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330153M07 product:solute carrier family 25 (mitochondrial carrier: glutamate), member 22, full insert sequence.
AK158985 - Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K530024H12 product:unclassifiable, full insert sequence.
AK048389 - Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130055F24 product:NT2RP3001355 PROTEIN homolog [Homo sapiens], full insert sequence.
AK010193 - Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310076D23 product:weakly similar to SOLUTE CARRIER [Homo sapiens], full insert sequence.
AK046874 - Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830043K10 product:NT2RP3001355 PROTEIN homolog [Homo sapiens], full insert sequence.
AK018760 - Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300006L01 product:hypothetical Mitochondrial energy transfer proteins (carrier protein) containing protein, full insert sequence.
AK155276 - Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630213M12 product:solute carrier family 25 (mitochondrial carrier: glutamate), member 22, full insert sequence.
AK049313 - Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330021P11 product:weakly similar to SOLUTE CARRIER [Homo sapiens], full insert sequence.
LF296629 - JP 2014500723-A/104132: Polycomb-Associated Non-Coding RNAs.
LF296630 - JP 2014500723-A/104133: Polycomb-Associated Non-Coding RNAs.
AK187553 - Mus musculus cDNA, clone:Y0G0142D24, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019226, based on BLAT search.
AK181898 - Mus musculus cDNA, clone:Y0G0120A07, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000019226, based on BLAT search.
LF296632 - JP 2014500723-A/104135: Polycomb-Associated Non-Coding RNAs.
MA432270 - JP 2018138019-A/4196: Polycomb-Associated Non-Coding RNAs.
MA532206 - JP 2018138019-A/104132: Polycomb-Associated Non-Coding RNAs.
MA532207 - JP 2018138019-A/104133: Polycomb-Associated Non-Coding RNAs.
MA532209 - JP 2018138019-A/104135: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9D6M3 (Reactome details) participates in the following event(s):

R-MMU-8875623 SLC25A18,A22 cotransport Glu, H+ from cytosol to mitochondrial matrix
R-MMU-428643 Organic anion transporters
R-MMU-425374 Amino acid and oligopeptide SLC transporters
R-MMU-425393 Metabolism of nitrogenous molecules
R-MMU-425407 SLC-mediated transmembrane transport
R-MMU-382551 Transport of small molecules

-  Other Names for This Gene
  Alternate Gene Symbols: Gc1, GHC1_MOUSE, NM_026646, Q3TRY1, Q9D6M3, uc009kla.1, uc009kla.2, uc009kla.3
UCSC ID: uc009kla.3
RefSeq Accession: NM_026646
Protein: Q9D6M3 (aka GHC1_MOUSE)
CCDS: CCDS22013.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.