Mouse Gene Slc25a21 (ENSMUST00000044634.11) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 (Slc25a21), transcript variant 1, mRNA. (from RefSeq NM_172577)
Gencode Transcript: ENSMUST00000044634.11
Gencode Gene: ENSMUSG00000035472.14
Transcript (Including UTRs)
   Position: mm10 chr12:56,712,634-57,197,472 Size: 484,839 Total Exon Count: 10 Strand: -
Coding Region
   Position: mm10 chr12:56,713,813-57,196,939 Size: 483,127 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-20

+  Sequence and Links to Tools and Databases
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+  Comments and Description Text from UniProtKB
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-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -185.80533-0.349 Picture PostScript Text
3' UTR -220.401179-0.187 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on Q8BZ09
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

+  Orthologous Genes in Other Species
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005310 dicarboxylic acid transmembrane transporter activity

Biological Process:
GO:0006835 dicarboxylic acid transport
GO:0006839 mitochondrial transport

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


+  Descriptions from all associated GenBank mRNAs
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-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8BZ09 (Reactome details) participates in the following event(s):

R-MMU-372480 2-oxoglutarate [mitochondrial matrix] + 2-oxoadipate [cytosol] <=> 2-oxoglutarate [cytosol] + 2-oxoadipate [mitochondrial matrix]
R-MMU-71064 Lysine catabolism
R-MMU-6788656 Histidine, lysine, phenylalanine, tyrosine, proline and tryptophan catabolism
R-MMU-71291 Metabolism of nitrogenous molecules
R-MMU-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: NM_172577, Odc, ODC_MOUSE, Q8BY72, Q8BZ09, uc007npj.1, uc007npj.2
UCSC ID: uc007npj.2
RefSeq Accession: NM_172577
Protein: Q8BZ09 (aka ODC_MOUSE)
CCDS: CCDS25925.1

+  Gene Model Information
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+  Methods, Credits, and Use Restrictions
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