Mouse Gene Pax1 (ENSMUST00000109968.2) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus paired box 1 (Pax1), mRNA. (from RefSeq NM_008780)
Gencode Transcript: ENSMUST00000109968.2
Gencode Gene: ENSMUSG00000037034.16
Transcript (Including UTRs)
   Position: mm10 chr2:147,364,994-147,375,053 Size: 10,060 Total Exon Count: 5 Strand: +
Coding Region
   Position: mm10 chr2:147,365,048-147,373,805 Size: 8,758 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2019-09-20

+  Sequence and Links to Tools and Databases
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+  Comments and Description Text from UniProtKB
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+  Comparative Toxicogenomics Database (CTD)
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -5.4054-0.100 Picture PostScript Text
3' UTR -354.901248-0.284 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

+  Protein Domain and Structure Information
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+  Orthologous Genes in Other Species
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+  Gene Ontology (GO) Annotations with Structured Vocabulary
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-  Descriptions from all associated GenBank mRNAs
  AB080657 - Mus musculus Pax1 mRNA, partial cds, clone:5832438N23.
AB080656 - Mus musculus Pax1 mRNA, partial cds, clone:A430036B21.
AK134066 - Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830427P13 product:paired box gene 1, full insert sequence.
M69222 - Mouse Pax-1 protein (Pax-1) mRNA, complete cds.
BC140989 - Mus musculus paired box gene 1, mRNA (cDNA clone MGC:175950 IMAGE:9055601), complete cds.
AK041531 - Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630019K16 product:paired box gene 1, full insert sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A2ALJ9, NM_008780, P09084, Pax-1, PAX1_MOUSE, Q9R2B1, uc008msx.1, uc008msx.2, uc008msx.3, uc008msx.4
UCSC ID: uc008msx.4
RefSeq Accession: NM_008780
Protein: P09084 (aka PAX1_MOUSE)
CCDS: CCDS16835.2

-  Gene Model Information
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+  Methods, Credits, and Use Restrictions
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