Mouse Gene Pax8 (ENSMUST00000028355.10) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus paired box 8 (Pax8), mRNA. (from RefSeq NM_011040)
RefSeq Summary (NM_011040): This gene encodes a member of a family of transcription factors that contain a characteristic N-terminal paired DNA-binding domain. The encoded protein is important for proper differentiation of the thyroid and the kidney. Alternatively spliced transcript variants of this gene have been described, but their full-length nature is not known. [provided by RefSeq, Mar 2013].
Gencode Transcript: ENSMUST00000028355.10
Gencode Gene: ENSMUSG00000026976.15
Transcript (Including UTRs)
   Position: mm10 chr2:24,420,560-24,475,599 Size: 55,040 Total Exon Count: 12 Strand: -
Coding Region
   Position: mm10 chr2:24,421,548-24,475,097 Size: 53,550 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-20

+  Sequence and Links to Tools and Databases
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+  Comments and Description Text from UniProtKB
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+  Comparative Toxicogenomics Database (CTD)
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -85.60198-0.432 Picture PostScript Text
3' UTR -271.40988-0.275 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

+  Protein Domain and Structure Information
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+  Orthologous Genes in Other Species
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+  Gene Ontology (GO) Annotations with Structured Vocabulary
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-  Descriptions from all associated GenBank mRNAs
  AK052610 - Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630004L01 product:PAIRED BOX GENE 8 homolog [Mus musculus], full insert sequence.
BC020526 - Mus musculus paired box gene 8, mRNA (cDNA clone MGC:18390 IMAGE:4239835), complete cds.
X57487 - M.musculus mRNA Pax8.
AK050717 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030009M16 product:PAIRED BOX GENE 8 homolog [Mus musculus], full insert sequence.
AK032920 - Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720473A10 product:paired box gene 8, full insert sequence.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu05200 - Pathways in cancer
mmu05216 - Thyroid cancer

-  Other Names for This Gene
  Alternate Gene Symbols: NM_011040, P97342, Pax-8, PAX8_MOUSE, Q00288, Q6GU20, uc008ipb.1, uc008ipb.2, uc008ipb.3
UCSC ID: uc008ipb.3
RefSeq Accession: NM_011040
Protein: Q00288 (aka PAX8_MOUSE)
CCDS: CCDS15738.1

-  Gene Model Information
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+  Methods, Credits, and Use Restrictions
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