Mouse Gene Pax3 (ENSMUST00000004994.15) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus paired box 3 (Pax3), transcript variant 2, mRNA. (from RefSeq NM_001159520)
Gencode Transcript: ENSMUST00000004994.15
Gencode Gene: ENSMUSG00000004872.15
Transcript (Including UTRs)
   Position: mm10 chr1:78,101,267-78,196,838 Size: 95,572 Total Exon Count: 9 Strand: -
Coding Region
   Position: mm10 chr1:78,102,801-78,196,749 Size: 93,949 Coding Exon Count: 9 

Page IndexSequence and LinksUniProtKB CommentsCTDRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2019-09-20

+  Sequence and Links to Tools and Databases
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+  Comments and Description Text from UniProtKB
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+  Comparative Toxicogenomics Database (CTD)
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -20.3089-0.228 Picture PostScript Text
3' UTR -390.901534-0.255 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

+  Protein Domain and Structure Information
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+  Orthologous Genes in Other Species
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+  Gene Ontology (GO) Annotations with Structured Vocabulary
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-  Descriptions from all associated GenBank mRNAs
  AK157760 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130020L06 product:paired box gene 3, full insert sequence.
AK148354 - Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library, clone:G370107F15 product:paired box gene 3, full insert sequence.
AK147919 - Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270097N24 product:paired box gene 3, full insert sequence.
AK045018 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130019I10 product:paired box gene 3, full insert sequence.
BC048699 - Mus musculus paired box gene 3, mRNA (cDNA clone MGC:59364 IMAGE:6518115), complete cds.
X59358 - Mouse Pax-3 gene for a DNA binding protein, involved in early neurogenesis.
AK012493 - Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700066P22 product:paired box gene 3, full insert sequence.
AK144973 - Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length enriched library, clone:G830016I19 product:paired box gene 3, full insert sequence.
AK044985 - Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130017N14 product:paired box gene 3, full insert sequence.
AK014337 - Mus musculus 14, 17 days embryo head cDNA, RIKEN full-length enriched library, clone:3230402M02 product:paired box gene 3, full insert sequence.
AK214220 - Mus musculus cDNA, clone:Y2G0131B11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000069689, based on BLAT search.
AK191274 - Mus musculus cDNA, clone:Y1G0105F24, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000069689, based on BLAT search.
AK183425 - Mus musculus cDNA, clone:Y0G0125N13, strand:unspecified.
AK195848 - Mus musculus cDNA, clone:Y1G0119N07, strand:unspecified.
AJ829760 - Mus musculus partial mRNA Pax3:Fhke fusion protein (Pax3:Fkhr gene).
AY743239 - Mus musculus PAX3/FKHR fusion (Pax3/Fkhr fusion) mRNA, Pax3/Fkhr fusion-P3Fa allele, partial cds.
S66429 - Pax-3 [mice, C3H/HeJ, mRNA Partial, 127 nt].
S66433 - Pax-3 (splotch(Sp2H)) [mice, Sp2H/Sp2H, mRNA Partial Mutant, 95 nt].
AK182746 - Mus musculus cDNA, clone:Y0G0123J18, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000004994, based on BLAT search.
AK178379 - Mus musculus cDNA, clone:Y0G0106H15, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000004994, based on BLAT search.
AK048723 - Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230022H20 product:paired box gene 3, full insert sequence.
AK083424 - Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030006B03 product:paired box gene 3, full insert sequence.
AK198372 - Mus musculus cDNA, clone:Y1G0127P16, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000004994, based on BLAT search.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
m_pmlPathway - Regulation of transcriptional activity by PML

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001159520, Q8BRF1, Q8BRF1_MOUSE, uc007bqc.1, uc007bqc.2, uc007bqc.3
UCSC ID: uc007bqc.3
RefSeq Accession: NM_001159520
Protein: Q8BRF1 CCDS: CCDS15082.1, CCDS48294.1

-  Gene Model Information
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+  Methods, Credits, and Use Restrictions
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