Mouse Gene Slc25a4 (ENSMUST00000034049.4) from GENCODE VM23 Comprehensive Transcript Set (only Basic displayed by default)
  Description: Mus musculus solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 (Slc25a4), mRNA. (from RefSeq NM_007450)
Gencode Transcript: ENSMUST00000034049.4
Gencode Gene: ENSMUSG00000031633.4
Transcript (Including UTRs)
   Position: mm10 chr8:46,206,797-46,211,284 Size: 4,488 Total Exon Count: 4 Strand: -
Coding Region
   Position: mm10 chr8:46,207,463-46,210,922 Size: 3,460 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDRNA Structure
Protein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther Names
Model InformationMethods
Data last updated at UCSC: 2019-09-20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:46,206,797-46,211,284)mRNA (may differ from genome)Protein (298 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsMGI
PubMedReactomeSOURCEUniProtKBWikipedia

-  Comments and Description Text from UniProtKB
  ID: ADT1_MOUSE
DESCRIPTION: RecName: Full=ADP/ATP translocase 1; AltName: Full=ADP,ATP carrier protein 1; AltName: Full=ADP,ATP carrier protein, heart/skeletal muscle isoform T1; AltName: Full=Adenine nucleotide translocator 1; Short=ANT 1; AltName: Full=Solute carrier family 25 member 4; AltName: Full=mANC1;
FUNCTION: Catalyzes the exchange of cytoplasmic ADP with mitochondrial ATP across the mitochondrial inner membrane.
SUBUNIT: Homodimer. Found in a complex with ARL2, ARL2BP and SLC25A4. Interacts with ARL2BP.
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein. Note=The complex formed with ARL2BP, ARL2 and SLC25A4 is expressed in mitochondria.
MISCELLANEOUS: The transmembrane helices are not perpendicular to the plane of the membrane, but cross the membrane at an angle. Odd-numbered transmembrane helices exhibit a sharp kink, due to the presence of a conserved proline residue (By similarity).
SIMILARITY: Belongs to the mitochondrial carrier family.
SIMILARITY: Contains 3 Solcar repeats.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D016572 Cyclosporine
  • D004997 Ethinyl Estradiol
  • D013629 Tamoxifen
  • D013749 Tetrachlorodibenzodioxin
  • C049325 1,2-dithiol-3-thione
  • C403065 10-(fluoroethoxyphosphinyl)-N-(biotinamidopentyl)decanamide
  • D015073 2-Acetylaminofluorene
  • C049584 2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine
  • C030370 2-methoxy-5-(2',3',4'-trimethoxyphenyl)tropone
  • C017906 3-dinitrobenzene
          more ... click here to view the complete list

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -168.70362-0.466 Picture PostScript Text
3' UTR -159.80666-0.240 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002113 - Aden_trnslctor
IPR002067 - Mit_carrier
IPR018108 - Mitochondrial_sb/sol_carrier
IPR023395 - Mt_carrier_dom

Pfam Domains:
PF00153 - Mitochondrial carrier protein

SCOP Domains:
101307 - YutG-like
103506 - Mitochondrial carrier

ModBase Predicted Comparative 3D Structure on P48962
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
HumanRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologGenome BrowserNo ortholog
Gene Details     
Gene Sorter     
GenBankRGD  WormBase 
Protein SequenceProtein Sequence  Protein Sequence 
AlignmentAlignment  Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005471 ATP:ADP antiporter activity
GO:0005515 protein binding
GO:0019899 enzyme binding
GO:0022857 transmembrane transporter activity

Biological Process:
GO:0008637 apoptotic mitochondrial changes
GO:0010667 negative regulation of cardiac muscle cell apoptotic process
GO:0015866 ADP transport
GO:0015867 ATP transport
GO:0046902 regulation of mitochondrial membrane permeability
GO:0055085 transmembrane transport
GO:0060546 negative regulation of necroptotic process
GO:0061051 positive regulation of cell growth involved in cardiac muscle cell development
GO:1902109 negative regulation of mitochondrial membrane permeability involved in apoptotic process
GO:2000277 positive regulation of oxidative phosphorylation uncoupler activity

Cellular Component:
GO:0005739 mitochondrion
GO:0005741 mitochondrial outer membrane
GO:0005743 mitochondrial inner membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0032592 integral component of mitochondrial membrane
GO:0043209 myelin sheath
GO:0045121 membrane raft


-  Descriptions from all associated GenBank mRNAs
  AK202044 - Mus musculus cDNA, clone:Y1G0140D11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.
AK078077 - Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330437A14 product:solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4, full insert sequence.
U27315 - Mus musculus adenine nucleotide translocase-1 (Ant1) mRNA, complete cds.
X74510 - M.musculus ANC1 mRNA for adenine nucleotide carrier.
BC003791 - Mus musculus solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4, mRNA (cDNA clone MGC:6027 IMAGE:3599576), complete cds.
AK186988 - Mus musculus cDNA, clone:Y0G0139H02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.
BC026925 - Mus musculus solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4, mRNA (cDNA clone MGC:25083 IMAGE:4500784), complete cds.
AK051172 - Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130011A21 product:solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4, full insert sequence.
AK177376 - Mus musculus cDNA, clone:Y0G0102I20, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.
AK186552 - Mus musculus cDNA, clone:Y0G0137M03, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.
AK200251 - Mus musculus cDNA, clone:Y1G0133P05, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.
AK203920 - Mus musculus cDNA, clone:Y1G0146K22, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.
AK182801 - Mus musculus cDNA, clone:Y0G0123M06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.
AK176986 - Mus musculus cDNA, clone:Y0G0101D10, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.
AK197947 - Mus musculus cDNA, clone:Y1G0126K11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.
AK199193 - Mus musculus cDNA, clone:Y1G0130H06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000034049, based on BLAT search.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
mmu04020 - Calcium signaling pathway
mmu05012 - Parkinson's disease
mmu05016 - Huntington's disease

BioCyc Knowledge Library
PWY3DJ-471 - creatine-phosphate energy transfer

Reactome (by CSHL, EBI, and GO)

Protein P48962 (Reactome details) participates in the following event(s):

R-MMU-5250209 ARL2:GTP:ARL2BP binds SLC25A4
R-MMU-5672027 ARL2:GTP:ARL2BP:SLC25A4 dimer exchanges ATP for ADP across the mitochondrial inner membrane
R-MMU-422356 Regulation of insulin secretion
R-MMU-163685 Energy Metabolism
R-MMU-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: ADT1_MOUSE, Anc1, Ant1, NM_007450, P48962, Q62164, uc009lpz.1, uc009lpz.2, uc009lpz.3, uc009lpz.4
UCSC ID: uc009lpz.4
RefSeq Accession: NM_007450
Protein: P48962 (aka ADT1_MOUSE)
CCDS: CCDS40333.1

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.