Human Gene LRP1-AS (ENST00000554476.1) from GENCODE V44
  Description: Homo sapiens LRP1 antisense RNA (LRP1-AS), transcript variant 2, long non-coding RNA. (from RefSeq NR_131939)
Gencode Transcript: ENST00000554476.1
Gencode Gene: ENSG00000259125.1
Transcript (Including UTRs)
   Position: hg38 chr12:57,146,490-57,147,529 Size: 1,040 Total Exon Count: 2 Strand: -

Page IndexSequence and LinksPrimersRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2023-08-18 09:09:47

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr12:57,146,490-57,147,529)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerGencodeLynxPubMed

-  Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.14 RPKM in Cells - Cultured fibroblasts
Total median expression: 47.88 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  LF208940 - JP 2014500723-A/16443: Polycomb-Associated Non-Coding RNAs.
MA444517 - JP 2018138019-A/16443: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_131939, uc058ptc.1
UCSC ID: ENST00000554476.1
RefSeq Accession: NR_131939

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.