Human Gene PIK3CD-AS2 (ENST00000415330.4) from GENCODE V44
  Description: Homo sapiens PIK3CD antisense RNA 2 (PIK3CD-AS2), transcript variant 2, long non-coding RNA. (from RefSeq NR_126367)
Gencode Transcript: ENST00000415330.4
Gencode Gene: ENSG00000231789.4
Transcript (Including UTRs)
   Position: hg38 chr1:9,672,405-9,687,583 Size: 15,179 Total Exon Count: 3 Strand: -

Page IndexSequence and LinksPrimersRNA-Seq ExpressionOther SpeciesmRNA Descriptions
Other NamesMethods
Data last updated at UCSC: 2023-08-18 09:09:47

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr1:9,672,405-9,687,583)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSEnsembl
Entrez GeneExonPrimerPubMed

-  Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.79 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 40.46 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  BC038541 - Homo sapiens, clone IMAGE:5190399, mRNA.
BC071786 - Homo sapiens cDNA clone IMAGE:4610229, partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000415330.1, ENST00000415330.2, ENST00000415330.3, NR_126367, uc057caz.1, uc057caz.2, uc057caz.3
UCSC ID: ENST00000415330.4
RefSeq Accession: NR_126366

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.