Human Gene PPP3CA (uc011cen.1)
  Description: Homo sapiens protein phosphatase 3, catalytic subunit, alpha isozyme (PPP3CA), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr4:101,944,587-102,268,628 Size: 324,042 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr4:101,947,022-102,267,953 Size: 320,932 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr4:101,944,587-102,268,628)mRNA (may differ from genome)Protein (521 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDHuman Cortex Gene ExpressionLynx
MalacardsMGIneXtProtOMIMPubMedReactome
TreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PP2BA_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform; EC=3.1.3.16; AltName: Full=CAM-PRP catalytic subunit; AltName: Full=Calmodulin-dependent calcineurin A subunit alpha isoform;
FUNCTION: Calcium-dependent, calmodulin-stimulated protein phosphatase. This subunit may have a role in the calmodulin activation of calcineurin. Dephosphorylates DNM1L, HSPB1 and SSH1.
CATALYTIC ACTIVITY: A phosphoprotein + H(2)O = a protein + phosphate.
COFACTOR: Binds 1 Fe(3+) ion per subunit.
COFACTOR: Binds 1 zinc ion per subunit.
SUBUNIT: Interacts with CHP1 and CHP2 (By similarity). Composed of two components (A and B), the A component is the catalytic subunit and the B component confers calcium sensitivity. Interacts with CRTC2, MYOZ1, MYOZ2 and MYOZ3. Interacts with DNM1L; the interaction dephosphorylates DNM1L and regulates its translocation to mitochondria. Interacts with CMYA5; this interaction represses calcineurin activity in muscle (By similarity).
INTERACTION: P62993:GRB2; NbExp=2; IntAct=EBI-352922, EBI-401755;
SUBCELLULAR LOCATION: Nucleus (By similarity). Note=Colocalizes with ACTN1 and MYOZ2 at the Z line in heart and skeletal muscle (By similarity).
SIMILARITY: Belongs to the PPP phosphatase family. PP-2B subfamily.
WEB RESOURCE: Name=Wikipedia; Note=Calcineurin entry; URL="http://en.wikipedia.org/wiki/Calcineurin";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): PPP3CA
CDC HuGE Published Literature: PPP3CA
Positive Disease Associations: Keratoconus
Related Studies:
  1. Keratoconus
    Xiaohui Li et al. Human molecular genetics 2012, A genome-wide association study identifies a potential novel gene locus for keratoconus, one of the commonest causes for corneal transplantation in developed countries., Human molecular genetics. [PubMed 21979947]

-  MalaCards Disease Associations
  MalaCards Gene Search: PPP3CA
Diseases sorted by gene-association score: uterine corpus endometrial carcinoma (16), viral esophagitis (16), osteomyelitis (15), benign essential hypertension (10), alexia (9), erysipeloid (8), histiocytic and dendritic cell cancer (6), agraphia (6), chronic ulcer of skin (5), decubitus ulcer (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 95.34 RPKM in Brain - Caudate (basal ganglia)
Total median expression: 980.53 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -342.42675-0.507 Picture PostScript Text
3' UTR -609.692435-0.250 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004843 - Metallo_PEstase_dom
IPR006186 - Ser/Thr-sp_prot-phosphatase

Pfam Domains:
PF00149 - Calcineurin-like phosphoesterase

SCOP Domains:
56300 - Metallo-dependent phosphatases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1AUI - X-ray MuPIT 1M63 - X-ray MuPIT 1MF8 - X-ray MuPIT 2JOG - NMR MuPIT 2JZI - NMR MuPIT 2P6B - X-ray MuPIT 2R28 - X-ray MuPIT 2W73 - X-ray MuPIT 3LL8 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q08209
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004722 protein serine/threonine phosphatase activity
GO:0004723 calcium-dependent protein serine/threonine phosphatase activity
GO:0005509 calcium ion binding
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0008144 drug binding
GO:0016018 cyclosporin A binding
GO:0016787 hydrolase activity
GO:0019899 enzyme binding
GO:0033192 calmodulin-dependent protein phosphatase activity
GO:0046872 metal ion binding
GO:0046982 protein heterodimerization activity
GO:0046983 protein dimerization activity

Biological Process:
GO:0000082 G1/S transition of mitotic cell cycle
GO:0001975 response to amphetamine
GO:0006470 protein dephosphorylation
GO:0006606 protein import into nucleus
GO:0006816 calcium ion transport
GO:0007223 Wnt signaling pathway, calcium modulating pathway
GO:0010613 positive regulation of cardiac muscle hypertrophy
GO:0010628 positive regulation of gene expression
GO:0010629 negative regulation of gene expression
GO:0014883 transition between fast and slow fiber
GO:0014898 cardiac muscle hypertrophy in response to stress
GO:0016311 dephosphorylation
GO:0019722 calcium-mediated signaling
GO:0033173 calcineurin-NFAT signaling cascade
GO:0033555 multicellular organismal response to stress
GO:0035562 negative regulation of chromatin binding
GO:0035690 cellular response to drug
GO:0038095 Fc-epsilon receptor signaling pathway
GO:0042110 T cell activation
GO:0045807 positive regulation of endocytosis
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0046676 negative regulation of insulin secretion
GO:0048741 skeletal muscle fiber development
GO:0050774 negative regulation of dendrite morphogenesis
GO:0050804 modulation of synaptic transmission
GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051592 response to calcium ion
GO:0060079 excitatory postsynaptic potential
GO:0070886 positive regulation of calcineurin-NFAT signaling cascade
GO:0071333 cellular response to glucose stimulus
GO:1903244 positive regulation of cardiac muscle hypertrophy in response to stress
GO:1903799 negative regulation of production of miRNAs involved in gene silencing by miRNA
GO:1905205 positive regulation of connective tissue replacement

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0005955 calcineurin complex
GO:0016020 membrane
GO:0030018 Z disc
GO:0042383 sarcolemma
GO:0043197 dendritic spine
GO:0009898 cytoplasmic side of plasma membrane


-  Descriptions from all associated GenBank mRNAs
  AL353950 - Homo sapiens mRNA; cDNA DKFZp761L0516 (from clone DKFZp761L0516).
EU192652 - Homo sapiens calcineurin isoform CNEX9-11 (PPP3CA) mRNA, complete cds, alternatively spliced.
EU192653 - Homo sapiens calcineurin isoform CNEX3-10 (PPP3CA) mRNA, complete cds, alternatively spliced.
BC025714 - Homo sapiens protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform, mRNA (cDNA clone MGC:34395 IMAGE:5227691), complete cds.
L14778 - Human calmodulin-dependent protein phosphatase catalytic subunit (PPP3CA) mRNA, complete cds and alternative exon.
J05480 - Human calcineurin catalytic subunit mRNA, complete cds.
BC098424 - Homo sapiens cDNA clone IMAGE:6341396, containing frame-shift errors.
AK290532 - Homo sapiens cDNA FLJ78408 complete cds, highly similar to Homo sapiens protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha), mRNA.
AY904364 - Homo sapiens protein phosphatase 3 (PPP3CA) mRNA, complete cds.
E07798 - DNA encoding Calcineurin A alpha.
KJ891872 - Synthetic construct Homo sapiens clone ccsbBroadEn_01266 PPP3CA gene, encodes complete protein.
AB451338 - Homo sapiens PPP3CA mRNA for serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform, complete cds, clone: FLJ85501SAAN.
AB385587 - Synthetic construct DNA, clone: pF1KB9515, Homo sapiens PPP3CA gene for serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform, complete cds, without stop codon, in Flexi system.
AB451487 - Homo sapiens PPP3CA mRNA for serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform, partial cds, clone: FLJ85501SAAF.
AM393486 - Synthetic construct Homo sapiens clone IMAGE:100002562 for hypothetical protein (PPP3CA gene).
AM393713 - Synthetic construct Homo sapiens clone IMAGE:100002563 for hypothetical protein (PPP3CA gene).
KU178269 - Homo sapiens protein phosphatase 3 catalytic subunit alpha isozyme isoform 1 (PPP3CA) mRNA, partial cds.
KU178270 - Homo sapiens protein phosphatase 3 catalytic subunit alpha isozyme isoform 2 (PPP3CA) mRNA, partial cds.
CU693026 - Synthetic construct Homo sapiens gateway clone IMAGE:100019737 5' read PPP3CA mRNA.
JD566635 - Sequence 547659 from Patent EP1572962.
JD058683 - Sequence 39707 from Patent EP1572962.
JD196714 - Sequence 177738 from Patent EP1572962.
JD082700 - Sequence 63724 from Patent EP1572962.
JD566345 - Sequence 547369 from Patent EP1572962.
JD328384 - Sequence 309408 from Patent EP1572962.
JD050630 - Sequence 31654 from Patent EP1572962.
JD316691 - Sequence 297715 from Patent EP1572962.
JD058770 - Sequence 39794 from Patent EP1572962.
JD314832 - Sequence 295856 from Patent EP1572962.
JD298950 - Sequence 279974 from Patent EP1572962.
JD553817 - Sequence 534841 from Patent EP1572962.
JD243705 - Sequence 224729 from Patent EP1572962.
JD262366 - Sequence 243390 from Patent EP1572962.
JD295068 - Sequence 276092 from Patent EP1572962.
JD109666 - Sequence 90690 from Patent EP1572962.
JD207917 - Sequence 188941 from Patent EP1572962.
JD467108 - Sequence 448132 from Patent EP1572962.
JD140986 - Sequence 122010 from Patent EP1572962.
JD471453 - Sequence 452477 from Patent EP1572962.
JD082401 - Sequence 63425 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04010 - MAPK signaling pathway
hsa04020 - Calcium signaling pathway
hsa04114 - Oocyte meiosis
hsa04210 - Apoptosis
hsa04310 - Wnt signaling pathway
hsa04360 - Axon guidance
hsa04370 - VEGF signaling pathway
hsa04650 - Natural killer cell mediated cytotoxicity
hsa04660 - T cell receptor signaling pathway
hsa04662 - B cell receptor signaling pathway
hsa04720 - Long-term potentiation
hsa05010 - Alzheimer's disease
hsa05014 - Amyotrophic lateral sclerosis (ALS)

BioCarta from NCI Cancer Genome Anatomy Project
h_gpcrPathway - Signaling Pathway from G-Protein Families
h_ndkDynaminPathway - Endocytotic role of NDK, Phosphins and Dynamin
h_calcineurinPathway - Effects of calcineurin in Keratinocyte Differentiation
h_nos1Pathway - Nitric Oxide Signaling Pathway
h_vipPathway - Neuropeptides VIP and PACAP inhibit the apoptosis of activated T cells
h_fcer1Pathway - Fc Epsilon Receptor I Signaling in Mast Cells
h_hdacPathway - Control of skeletal myogenesis by HDAC & calcium/calmodulin-dependent kinase (CaMK)
h_mef2dPathway - Role of MEF2D in T-cell Apoptosis
h_nfatPathway - NFAT and Hypertrophy of the heart (Transcription in the broken heart)
h_tcrPathway - T Cell Receptor Signaling Pathway
h_bcrPathway - BCR Signaling Pathway
h_fMLPpathway - fMLP induced chemokine gene expression in HMC-1 cells
h_pgc1aPathway - Regulation of PGC-1a
h_ck1Pathway - Regulation of ck1/cdk5 by type 1 glutamate receptors

Reactome (by CSHL, EBI, and GO)

Protein Q08209 (Reactome details) participates in the following event(s):

R-HSA-201783 Inactive catalytic PP2B is activated by the binding of calmodulin
R-HSA-2025890 Calcineurin binds NFATC1,2,3
R-HSA-2730872 Activation of Calcineurin
R-HSA-201787 PPP3 complex dephosphorylates DARPP-32 on Thr34
R-HSA-4551451 Calcineurin binds and dephosphorylates NFAT1 in response to WNT/Ca2+ signaling
R-HSA-2730867 Translocation of CaN:CaM:NFAT to nucleus
R-HSA-180024 DARPP-32 events
R-HSA-111885 Opioid Signalling
R-HSA-2025928 Calcineurin activates NFAT
R-HSA-2871809 FCERI mediated Ca+2 mobilization
R-HSA-4086398 Ca2+ pathway
R-HSA-5607763 CLEC7A (Dectin-1) induces NFAT activation
R-HSA-418594 G alpha (i) signalling events
R-HSA-1168372 Downstream signaling events of B Cell Receptor (BCR)
R-HSA-2454202 Fc epsilon receptor (FCERI) signaling
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-5607764 CLEC7A (Dectin-1) signaling
R-HSA-388396 GPCR downstream signalling
R-HSA-983705 Signaling by the B Cell Receptor (BCR)
R-HSA-168249 Innate Immune System
R-HSA-195721 Signaling by WNT
R-HSA-5621481 C-type lectin receptors (CLRs)
R-HSA-372790 Signaling by GPCR
R-HSA-1280218 Adaptive Immune System
R-HSA-168256 Immune System
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A8K3B7, A8W6Z7, B5BUA2, CALNA, CNA, NM_000944, NP_000935, PP2BA_HUMAN, Q08209, Q8TAW9
UCSC ID: uc011cen.1
RefSeq Accession: NM_000944
Protein: Q08209 (aka PP2BA_HUMAN)
CCDS: CCDS34037.1, CCDS47114.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_000944.4
exon count: 14CDS single in 3' UTR: no RNA size: 4676
ORF size: 1566CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3329.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.