Human Gene IGSF8 (uc009wtf.3)
  Description: Homo sapiens immunoglobulin superfamily, member 8 (IGSF8), transcript variant 2, mRNA.
RefSeq Summary (NM_001206665): This gene encodes a member the EWI subfamily of the immunoglobulin protein superfamily. Members of this family contain a single transmembrane domain, an EWI (Glu-Trp-Ile)-motif and a variable number of immunoglobulin domains. This protein interacts with the tetraspanins CD81 and CD9 and may regulate their role in certain cellular functions including cell migration and viral infection. The encoded protein may also function as a tumor suppressor by inhibiting the proliferation of certain cancers. Alternate splicing results in multiple transcript variants that encode the same protein. [provided by RefSeq, Sep 2011].
Transcript (Including UTRs)
   Position: hg19 chr1:160,061,129-160,068,618 Size: 7,490 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr1:160,061,613-160,068,262 Size: 6,650 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:160,061,129-160,068,618)mRNA (may differ from genome)Protein (613 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCHPRDLynxMalacardsMGI
neXtProtOMIMPubMedTreefamUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IGSF8_HUMAN
DESCRIPTION: RecName: Full=Immunoglobulin superfamily member 8; Short=IgSF8; AltName: Full=CD81 partner 3; AltName: Full=Glu-Trp-Ile EWI motif-containing protein 2; Short=EWI-2; AltName: Full=Keratinocytes-associated transmembrane protein 4; Short=KCT-4; AltName: Full=LIR-D1; AltName: Full=Prostaglandin regulatory-like protein; Short=PGRL; AltName: CD_antigen=CD316; Flags: Precursor;
FUNCTION: May play a key role in diverse functions ascribed to CD81 and CD9 such as oocytes fertilization or hepatitis C virus function. May regulate proliferation and differentiation of keratinocytes. May be a negative regulator of cell motility: suppresses T-cell mobility coordinately with CD81, associates with CD82 to suppress prostate cancer cell migration, regulates epidermoid cell reaggregation and motility on laminin-5 with CD9 and CD81 as key linkers. May also play a role on integrin- dependent morphology and motility functions. May participate in the regulation of neurite outgrowth and maintenance of the neural network in the adult brain.
SUBUNIT: Interacts directly with CD82, CD81/tetraspanin-28 and CD9/tetraspanin-29. Also interacts with integrin alpha-3/beta-1 and integrin alpha-4/beta-1.
SUBCELLULAR LOCATION: Cell membrane (By similarity); Single-pass membrane protein.
TISSUE SPECIFICITY: Expressed in brain, kidney, testis, liver and placenta with moderate expression in all other tissues. Detected on a majority of B-cells, T-cells, and natural killer cells but not on monocytes, polynuclear cells and platelets.
DOMAIN: The Ig-like C2-type domains 3 and 4 are required for interaction with CD81 (By similarity).
DOMAIN: The short cytoplasmic domain is very basic, interacts with membrane PIPs, and mediates plasma membrane localization (By similarity).
SIMILARITY: Contains 4 Ig-like C2-type (immunoglobulin-like) domains.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IGSF8
Diseases sorted by gene-association score: hepatitis c virus (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 119.49 RPKM in Brain - Cerebellum
Total median expression: 1714.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -32.4075-0.432 Picture PostScript Text
3' UTR -66.00285-0.232 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007110 - Ig-like
IPR013783 - Ig-like_fold
IPR003599 - Ig_sub
IPR013106 - Ig_V-set

Pfam Domains:
PF07686 - Immunoglobulin V-set domain

SCOP Domains:
48726 - Immunoglobulin

ModBase Predicted Comparative 3D Structure on Q969P0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0007338 single fertilization
GO:0007399 nervous system development
GO:0007519 skeletal muscle tissue development
GO:0008283 cell proliferation
GO:0048870 cell motility

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC011896 - Homo sapiens immunoglobulin superfamily, member 8, mRNA (cDNA clone IMAGE:3945840), complete cds.
AY044845 - Homo sapiens CD81 partner 3 (CD81P3) mRNA, complete cds.
AF407274 - Homo sapiens EWI2 mRNA, complete cds.
BC053881 - Homo sapiens immunoglobulin superfamily, member 8, mRNA (cDNA clone MGC:61809 IMAGE:5752209), complete cds.
BC023649 - Homo sapiens immunoglobulin superfamily, member 8, mRNA (cDNA clone IMAGE:3927206), partial cds.
BC004108 - Homo sapiens immunoglobulin superfamily, member 8, mRNA (cDNA clone IMAGE:3687782), partial cds.
AY157579 - Homo sapiens keratinocytes associated transmembrane protein 4 (KCT4) mRNA, complete cds.
AF311906 - Homo sapiens LIR-D1 precursor, mRNA, complete cds.
AK090396 - Homo sapiens mRNA for FLJ00271 protein.
AK055843 - Homo sapiens cDNA FLJ31281 fis, clone KIDNE2006760, weakly similar to PROSTAGLANDIN F2-ALPHA RECEPTOR REGULATORY PROTEIN PRECURSOR.
JD481307 - Sequence 462331 from Patent EP1572962.
JD151379 - Sequence 132403 from Patent EP1572962.
JD120948 - Sequence 101972 from Patent EP1572962.
AK308115 - Homo sapiens cDNA, FLJ98063.
JD553735 - Sequence 534759 from Patent EP1572962.
JD427397 - Sequence 408421 from Patent EP1572962.
JD431512 - Sequence 412536 from Patent EP1572962.
KJ899960 - Synthetic construct Homo sapiens clone ccsbBroadEn_09354 IGSF8 gene, encodes complete protein.
AB590475 - Synthetic construct DNA, clone: pFN21AE2153, Homo sapiens IGSF8 gene for immunoglobulin superfamily, member 8, without stop codon, in Flexi system.
JD031967 - Sequence 12991 from Patent EP1572962.
JD024228 - Sequence 5252 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CD81P3, EWI2, IGSF8_HUMAN, KCT4, NM_001206665, NP_443100, Q8NG09, Q969P0, Q96DP4, Q9BTG9
UCSC ID: uc009wtf.3
RefSeq Accession: NM_001206665
Protein: Q969P0 (aka IGSF8_HUMAN)
CCDS: CCDS1195.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001206665.2
exon count: 8CDS single in 3' UTR: no RNA size: 2218
ORF size: 1842CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3751.00frame shift in genome: no % Coverage: 99.28
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.