Human Gene MIDEAS (uc001xos.3)
  Description: Homo sapiens ELM2 and Myb/SANT-like domain containing 1 (MIDEAS), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr14:74,181,825-74,195,879 Size: 14,055 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr14:74,186,004-74,193,632 Size: 7,629 Coding Exon Count: 7 

Page IndexSequence and LinksPrimersGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:74,181,825-74,195,879)mRNA (may differ from genome)Protein (310 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaBioGPS
EnsemblExonPrimerGeneCardsGeneNetworkH-INVLynx
MGIPubMed

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.65 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 401.68 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -892.452247-0.397 Picture PostScript Text
3' UTR -1575.754179-0.377 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC052976 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:6193955), with apparent retained intron.
AB385229 - Synthetic construct DNA, clone: pF1KB9471, Homo sapiens C14orf43 gene for C14orf43 protein, complete cds, without stop codon, in Flexi system.
BC006511 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:3010441), partial cds.
BC025330 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:4111658), partial cds.
BC006451 - Homo sapiens, clone IMAGE:3960432, mRNA.
BC003121 - Homo sapiens, clone IMAGE:3357079, mRNA.
BC015668 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:4328688), partial cds.
BC009202 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:3614143), partial cds.
AK127785 - Homo sapiens cDNA FLJ45886 fis, clone OCBBF3021361.
BC105996 - Homo sapiens cDNA clone IMAGE:4776214.
AK024978 - Homo sapiens cDNA: FLJ21325 fis, clone COL02408, highly similar to AF147723 Homo sapiens lipopolysaccharide specific response-68 protein (LSR68) mRNA.
BC036475 - Homo sapiens cDNA clone IMAGE:5259265.
BC047633 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:4818554).
BC034345 - Homo sapiens cDNA clone IMAGE:4750481.
BC062730 - Homo sapiens cDNA clone IMAGE:6672804, partial cds.
AK095434 - Homo sapiens cDNA FLJ38115 fis, clone D3OST2002452.
LF209593 - JP 2014500723-A/17096: Polycomb-Associated Non-Coding RNAs.
LF329958 - JP 2014500723-A/137461: Polycomb-Associated Non-Coding RNAs.
JD311795 - Sequence 292819 from Patent EP1572962.
JD476726 - Sequence 457750 from Patent EP1572962.
JD069739 - Sequence 50763 from Patent EP1572962.
JD379671 - Sequence 360695 from Patent EP1572962.
JD560691 - Sequence 541715 from Patent EP1572962.
JD119789 - Sequence 100813 from Patent EP1572962.
JD371277 - Sequence 352301 from Patent EP1572962.
JD414484 - Sequence 395508 from Patent EP1572962.
JD514440 - Sequence 495464 from Patent EP1572962.
JD542915 - Sequence 523939 from Patent EP1572962.
JD560952 - Sequence 541976 from Patent EP1572962.
JD165228 - Sequence 146252 from Patent EP1572962.
LF329959 - JP 2014500723-A/137462: Polycomb-Associated Non-Coding RNAs.
DL492052 - Novel nucleic acids.
DL490601 - Novel nucleic acids.
AK308604 - Homo sapiens cDNA, FLJ98645.
JD479949 - Sequence 460973 from Patent EP1572962.
MA565535 - JP 2018138019-A/137461: Polycomb-Associated Non-Coding RNAs.
MA565536 - JP 2018138019-A/137462: Polycomb-Associated Non-Coding RNAs.
MA445170 - JP 2018138019-A/17096: Polycomb-Associated Non-Coding RNAs.
AK021512 - Homo sapiens cDNA FLJ11450 fis, clone HEMBA1001432.
AK090424 - Homo sapiens mRNA for FLJ00335 protein.
JD519887 - Sequence 500911 from Patent EP1572962.
JD064165 - Sequence 45189 from Patent EP1572962.
JD393152 - Sequence 374176 from Patent EP1572962.
JD369144 - Sequence 350168 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC052976, ELMSAN1
UCSC ID: uc001xos.3
RefSeq Accession: NM_001043318

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC052976.1
exon count: 7CDS single in 3' UTR: no RNA size: 5338
ORF size: 933CDS single in intron: no Alignment % ID: 99.91
txCdsPredict score: 758.00frame shift in genome: no % Coverage: 99.51
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 6387# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.