Human Gene ELANE (uc002lqb.3)
  Description: Homo sapiens elastase, neutrophil expressed (ELANE), mRNA.
RefSeq Summary (NM_001972): Elastases form a subfamily of serine proteases that hydrolyze many proteins in addition to elastin. Humans have six elastase genes which encode structurally similar proteins. The encoded preproprotein is proteolytically processed to generate the active protease. Following activation, this protease hydrolyzes proteins within specialized neutrophil lysosomes, called azurophil granules, as well as proteins of the extracellular matrix. The enzyme may play a role in degenerative and inflammatory diseases through proteolysis of collagen-IV and elastin. This protein also degrades the outer membrane protein A (OmpA) of E. coli as well as the virulence factors of such bacteria as Shigella, Salmonella and Yersinia. Mutations in this gene are associated with cyclic neutropenia and severe congenital neutropenia (SCN). This gene is present in a gene cluster on chromosome 19. [provided by RefSeq, Jan 2016].
Transcript (Including UTRs)
   Position: hg19 chr19:852,291-856,246 Size: 3,956 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr19:852,329-856,164 Size: 3,836 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:852,291-856,246)mRNA (may differ from genome)Protein (267 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
HGNCHPRDLynxMalacardsMGIneXtProt
OMIMPubMedReactomeTreefamUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ELNE_HUMAN
DESCRIPTION: RecName: Full=Neutrophil elastase; EC=3.4.21.37; AltName: Full=Bone marrow serine protease; AltName: Full=Elastase-2; AltName: Full=Human leukocyte elastase; Short=HLE; AltName: Full=Medullasin; AltName: Full=PMN elastase; Flags: Precursor;
FUNCTION: Modifies the functions of natural killer cells, monocytes and granulocytes. Inhibits C5a-dependent neutrophil enzyme release and chemotaxis.
CATALYTIC ACTIVITY: Hydrolysis of proteins, including elastin. Preferential cleavage: Val-|-Xaa > Ala-|-Xaa.
SUBUNIT: Interacts with NOTCH2NL.
INTERACTION: Q07563:Col17a1 (xeno); NbExp=2; IntAct=EBI-986345, EBI-6251005;
TISSUE SPECIFICITY: Bone marrow cells.
DISEASE: Defects in ELANE are a cause of cyclic haematopoiesis (CH) [MIM:162800]; also known as cyclic neutropenia. CH is an autosomal dominant disease in which blood-cell production from the bone marrow oscillates with 21-day periodicity. Circulating neutrophils vary between almost normal numbers and zero. During intervals of neutropenia, affected individuals are at risk for opportunistic infection. Monocytes, platelets, lymphocytes and reticulocytes also cycle with the same frequency.
DISEASE: Defects in ELANE are the cause of neutropenia severe congenital autosomal dominant type 1 (SCN1) [MIM:202700]. SCN1 is a disorder of hematopoiesis characterized by a maturation arrest of granulopoiesis at the level of promyelocytes with peripheral blood absolute neutrophil counts below 0.5 x 10(9)/l and early onset of severe bacterial infections.
SIMILARITY: Belongs to the peptidase S1 family. Elastase subfamily.
SIMILARITY: Contains 1 peptidase S1 domain.
SEQUENCE CAUTION: Sequence=CAA29300.1; Type=Erroneous initiation;
WEB RESOURCE: Name=ELA2base; Note=ELA2 mutation db; URL="http://bioinf.uta.fi/ELA2base/";
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/ELA2";
WEB RESOURCE: Name=NIEHS-SNPs; URL="http://egp.gs.washington.edu/data/ela2/";
WEB RESOURCE: Name=Wikipedia; Note=Elastase entry; URL="http://en.wikipedia.org/wiki/Elastase";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ELANE
Diseases sorted by gene-association score: neutropenia, cyclic* (1326), neutropenia, severe congenital 1, autosomal dominant* (1233), severe congenital neutropenia autosomal dominant* (750), elane-related neutropenia* (100), neutropenia (38), acute respiratory distress syndrome (34), bronchitis (32), pulmonary emphysema (25), alpha 1-antitrypsin deficiency (25), bronchial disease (22), severe congenital neutropenia (22), otitis externa (21), gingivitis (18), adult respiratory distress syndrome (18), zygomycosis (18), bronchiectasis (13), pustulosis palmaris et plantaris (13), pasteurellosis (12), elephantiasis (12), erysipelas (12), cardiac rupture (12), netherton syndrome (12), cerebral aneurysms (12), abdominal aortic aneurysm (11), pustular psoriasis (11), vasculitis (11), pneumonia (11), lung disease (11), wegener granulomatosis (11), plasminogen deficiency, type i (11), disseminated intravascular coagulation (11), mid-dermal elastolysis (10), impetigo herpetiformis (10), respiratory failure (10), cystic fibrosis (10), bronchopneumonia (10), chorioamnionitis (10), neutropenia, severe congenital 3, autosomal recessive (10), status asthmaticus (9), felty syndrome (9), aspergillosis (9), acute pancreatitis (9), farmer's lung (8), periodontal disease (8), rapidly progressive glomerulonephritis (8), bronchopulmonary dysplasia (8), impetigo (8), plasma protein metabolism disease (8), kawasaki disease (8), arthus reaction (7), pulmonary disease, chronic obstructive (7), capillary leak syndrome (7), de quervain disease (6), herpes simplex encephalitis (6), idiopathic interstitial pneumonia (5), filamentary keratitis (5), interstitial emphysema (5), vulvitis (5), pancreatitis, hereditary (5), aleukemic leukemia cutis (5), griscelli syndrome, type 1 (5), neurodegeneration with brain iron accumulation 4 (5), gingival disease (4), central nervous system tuberculosis (4), periodontosis (4), shwachman-diamond syndrome (4), leukocyte disease (4), asthma (3), nodular nonsuppurative panniculitis (3), periodontitis (3), cardiac arrest (3), pulmonary hypertension (2), autoinflammation, lipodystrophy, and dermatosis syndrome (2), respiratory system disease (2), pulmonary fibrosis, idiopathic (2), leukemia, acute promyelocytic, somatic (1), autosomal genetic disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.30 RPKM in Whole Blood
Total median expression: 78.40 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -11.5038-0.303 Picture PostScript Text
3' UTR -16.5082-0.201 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR009003 - Pept_cys/ser_Trypsin-like
IPR018114 - Peptidase_S1/S6_AS
IPR001254 - Peptidase_S1_S6
IPR001314 - Peptidase_S1A

Pfam Domains:
PF00089 - Trypsin

SCOP Domains:
50494 - Trypsin-like serine proteases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1B0F - X-ray 1H1B - X-ray 1HNE - X-ray MuPIT 1PPF - X-ray MuPIT 1PPG - X-ray 2RG3 - X-ray MuPIT 2Z7F - X-ray MuPIT 3Q76 - X-ray 3Q77 - X-ray


ModBase Predicted Comparative 3D Structure on P08246
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001106 RNA polymerase II transcription corepressor activity
GO:0002020 protease binding
GO:0004175 endopeptidase activity
GO:0004252 serine-type endopeptidase activity
GO:0005515 protein binding
GO:0008201 heparin binding
GO:0008233 peptidase activity
GO:0008236 serine-type peptidase activity
GO:0016787 hydrolase activity
GO:0019955 cytokine binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0001878 response to yeast
GO:0002438 acute inflammatory response to antigenic stimulus
GO:0002523 leukocyte migration involved in inflammatory response
GO:0002812 biosynthetic process of antibacterial peptides active against Gram-negative bacteria
GO:0006508 proteolysis
GO:0006874 cellular calcium ion homeostasis
GO:0006909 phagocytosis
GO:0009411 response to UV
GO:0019730 antimicrobial humoral response
GO:0022617 extracellular matrix disassembly
GO:0030163 protein catabolic process
GO:0032496 response to lipopolysaccharide
GO:0042742 defense response to bacterium
GO:0043312 neutrophil degranulation
GO:0043406 positive regulation of MAP kinase activity
GO:0044130 negative regulation of growth of symbiont in host
GO:0045079 negative regulation of chemokine biosynthetic process
GO:0045415 negative regulation of interleukin-8 biosynthetic process
GO:0045416 positive regulation of interleukin-8 biosynthetic process
GO:0048661 positive regulation of smooth muscle cell proliferation
GO:0050728 negative regulation of inflammatory response
GO:0050778 positive regulation of immune response
GO:0050832 defense response to fungus
GO:0050900 leukocyte migration
GO:0050922 negative regulation of chemotaxis
GO:0070945 neutrophil mediated killing of gram-negative bacterium
GO:0070947 neutrophil mediated killing of fungus
GO:1903238 positive regulation of leukocyte tethering or rolling

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0009986 cell surface
GO:0017053 transcriptional repressor complex
GO:0030141 secretory granule
GO:0035578 azurophil granule lumen
GO:0035580 specific granule lumen
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  M34379 - Human elastase/medullasin mRNA, complete cds.
X05875 - Human mRNA for medullasin (leukocyte (neutrophil) elastase.
BC074816 - Homo sapiens elastase 2, neutrophil, mRNA (cDNA clone MGC:104083 IMAGE:30915534), complete cds.
BC074817 - Homo sapiens elastase 2, neutrophil, mRNA (cDNA clone MGC:103928 IMAGE:30915320), complete cds.
KJ891100 - Synthetic construct Homo sapiens clone ccsbBroadEn_00494 ELANE gene, encodes complete protein.
KR712119 - Synthetic construct Homo sapiens clone CCSBHm_00035869 ELANE (ELANE) mRNA, encodes complete protein.
KR712120 - Synthetic construct Homo sapiens clone CCSBHm_00035887 ELANE (ELANE) mRNA, encodes complete protein.
KR712121 - Synthetic construct Homo sapiens clone CCSBHm_00035894 ELANE (ELANE) mRNA, encodes complete protein.
D00187 - Homo sapiens mRNA for medullasin, partial cds.
J03545 - Human neutrophil elastase mRNA, 3' end.
M27783 - Human neutrophil elastase mRNA, 3' end.
JD409130 - Sequence 390154 from Patent EP1572962.
JD377007 - Sequence 358031 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa05322 - Systemic lupus erythematosus

BioCarta from NCI Cancer Genome Anatomy Project
h_pepiPathway - Proepithelin Conversion to Epithelin and Wound Repair Control

Reactome (by CSHL, EBI, and GO)

Protein P08246 (Reactome details) participates in the following event(s):

R-HSA-6798751 Exocytosis of azurophil granule lumen proteins
R-HSA-6798749 Exocytosis of specific granule lumen proteins
R-HSA-6813659 ELANE, CTSG or PRTN3 binds bacteria
R-HSA-2482180 Collagen type VIII degradation by ELANE
R-NUL-2482182 Cleavage of collagen type VIII by ELANE
R-HSA-2514823 Fibrillin-1 degradation by ELANE
R-NUL-2514835 Degradation of fibrilin-1 by Elane
R-HSA-1592316 Initial activation of proMMP1
R-HSA-1566962 Elastin degradation by elastin-degrading extracellular proteinases
R-HSA-1592270 NID1 degradation by MMP1, 9, 12, ELANE
R-NUL-2533972 Nid1 degradation by MMP1, 9, 12, ELANE
R-HSA-1604712 Initial activation of proMMP7 by trypsin
R-HSA-8852716 Thrombin, ELANE cleave C5
R-HSA-6798695 Neutrophil degranulation
R-HSA-6803157 Antimicrobial peptides
R-HSA-1442490 Collagen degradation
R-HSA-1474228 Degradation of the extracellular matrix
R-HSA-1592389 Activation of Matrix Metalloproteinases
R-HSA-168249 Innate Immune System
R-HSA-977606 Regulation of Complement cascade
R-HSA-1474244 Extracellular matrix organization
R-HSA-168256 Immune System
R-HSA-166658 Complement cascade

-  Other Names for This Gene
  Alternate Gene Symbols: ELA2, ELNE_HUMAN, NM_001972, NP_001963, P08246, P09649, Q6B0D9, Q6LDP5
UCSC ID: uc002lqb.3
RefSeq Accession: NM_001972
Protein: P08246 (aka ELNE_HUMAN)
CCDS: CCDS12045.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ELANE:
cyclic-n (ELANE-Related Neutropenia)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001972.2
exon count: 5CDS single in 3' UTR: no RNA size: 938
ORF size: 804CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1796.00frame shift in genome: no % Coverage: 98.51
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.