Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 161 in window, 50312857 - 50312912, 56 bps 
B D                     Human  tgg----cgg-tgctattcattcagtca-ttgattcgtcttgtaaatatggagcg---------------
B D                     Chimp  tgg----cgg-tgctattcattcagtca-ttgattggtcttgtaaatatcgagcg---------------
B D                   Gorilla  tgg----cgg-tgctattcattcagtca-ttgattcgtcttgtaaatatcgagcg---------------
B D                 Orangutan  tgg----cgg-tgctattcattcagtca-ttgattcgtcttgtaactatcgagcg---------------
B D                    Gibbon  tgg----cgg-tgctattcattcagtca-ttgattcgtcttgtaaatatcgagcg---------------
B D                    Rhesus  tgg----cgg-gggtatttatttagtca-ttgattcgtcttgtaaatatcgagcg---------------
B D       Crab-eating macaque  tgg----cgg-agctattcattcagtca-ttgattcgtcttgtaaatatcgagcg---------------
B D                    Baboon  tgg----cgg-tgctattcattcagtca-ttgattcgtcttgaaaatatcgagcg---------------
B D              Green monkey  tgg----cgg-tgctattcattcagtca-ttgattcgtcttgtaaatatcgagcg---------------
B D                  Bushbaby  -------ctg-tgtcctttattcagatacttcaaccatcttaggaatactaagcg---------------
           Chinese tree shrew  tgg----ccg-ggccacgcgttcgagca-ccggtttgtcctgtaaatatccagcg---------------
B D                  Squirrel  tgg----cgg-tgccattcattcagtta-ttgatttgccttgttaatatcgagcg---------------
       Lesser Egyptian jerboa  tgg----tgg-tgtcgttcagt----ta-ctaactc-----gtgcatgttg-------------------
                 Prairie vole  tga----tgg-tgtcgttcatt-------ctgactcagcttgtaaatatcgggcgctgagctaggtgctg
               Golden hamster  tga----ttg-tatctttcattcgacta-ctgacttggcttgtaaatatccggcct--------------
B D                     Mouse  tgg----ttg--gttgttcattcaacca-ctgactcagcttgtaaatatcgggcg---------------
B D                       Rat  tgg----ttagtgtcgttcatttaacca-ctgactcagcctgtaaatattaggcc---------------
B D            Naked mole-rat  ggt----cgg-tgccttgcgatcagtta-ttgattcatgttgtaaatatcgagcg---------------
B D                Guinea pig  ggg----cgg-tgcccttcgatcagtta-ttgattcatgttgtaaatatcgagcg---------------
                   Chinchilla  ggg----cgg-tgccc-ccgatcactta-ccggttcaccttgcaaataccg-gcc---------------
             Brush-tailed rat  ggg----cgg-tgcccttcggtcggtta-ccgattcatcttgtaaataccgagcg---------------
B D                    Rabbit  tgg----cgg-cggctcataatcagtga-ctgattctccttgtaaatactc-------------------
B D                      Pika  ---------------------------------gttttcttagacgtgc---------------------
B D                       Pig  tag----cg--cgtcattctttcagtca-tttattggtcctttaaatattaagag---------------
B D                    Alpaca  tgg----tg--tgtcactcattcagtca-tttattggtcctgtaaatactgagcg---------------
               Bactrian camel  tgg----tg--tgtcactcattcagtca-tttattggtcctgtaaatattgagcg---------------
B D                   Dolphin  tga----cg--tgccattcat----tca-tttattggtcctgtaaatattgagca---------------
                 Killer whale  tga----cg--tgccattcat----tca-tttattggtcctgtaaatattgagca---------------
             Tibetan antelope  tga----ca--tgtcattca----------ttattggtcttgtaaatattgagcg---------------
B D                       Cow  tga----ca--tgtcattca----------ttattggtcttgtaaatattgagcg---------------
B D                     Sheep  tga----ca--tgtcattca----------ttattggtcttgtaaatattgagcg---------------
                Domestic goat  tga----ca--tgtcattca----------ttattggtcttgtaaatattgagcg---------------
B D          White rhinoceros  -----------ggtccttc--------------ctggtcctgtgactgcggagca---------------
B D                       Cat  tga----cga-tgtcatttc-------------ttggtgttgtaaatatcgagcg---------------
B D                       Dog  tgg----cgg-ggtcatttc-------------ttggtgctgtaaacagcgagcg---------------
B D                   Ferret   cgg----cgg-tgtcctct---------------------------------------------------
B D                     Panda  tgg----cag-ggtccttt--------------ttggtgctgtagatatcgagcg---------------
               Pacific walrus  tgg----cgg-tgtgctttc-------------tcggtactgtagatacggagcg---------------
                 Weddell seal  tgg----ccg-tgtcctttc-------------tcggtgctgtagttacggagcg---------------
             Black flying-fox  cgg----cgg-tgtcattca----gtta-tttgttgttcctgtaattattgagca---------------
B D                   Megabat  tgg----cgg-tgtcattca----gtta-tttgttgttcctgtaattattgagca---------------
                Big brown bat  tgg----cgc-tgccgttcatccggttg-tgtgtgggtcctgtaaagac----cg---------------
         David's myotis (bat)  c-g----cgc-tgccattcatccggcta-tttg-gggtcctgtaaatac----cg---------------
B D                  Microbat  c-g----cgc-ggccattcatccggctg-ctta-gggtcctgtaaatac----cg---------------
B D                  Hedgehog  tgg----ca--ggtggca------------------------------tccagcg---------------
B D                     Shrew  cgggaaccg--ggcggcttg-------------atg------------tctagct---------------
              Star-nosed mole  tgg-----t--ggtggctcg-------------ttg-------agtcatctagcg---------------
B D                  Elephant  taa----ggg-tggcattcattcagtca-tttattcgtcctataaatatcaagcc---------------
          Cape elephant shrew  cgg----gag-tgtcattgataaaatca-tttcttaaccctgtaaatatcaagct---------------
B D                   Manatee  tga----ggg-tgtcattcattcaatca-tttattcgtcctataaatatcaagcc---------------
                     Aardvark  tgg----ggg-tgtcattcattcagtca-ttacttcatcctgtaaatatcaaacc---------------
B D                 Armadillo  tgg----tcg-tgtcattcataa----a-tttattcgtcctttaaatgcgaagta---------------
B D                    Tenrec  ======================================================================
B D           Chinese hamster  ======================================================================
B D           Squirrel monkey  ======================================================================
B D                  Marmoset  ----------------------------------------------------------------------
B D                     Horse  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
B D                 Tetraodon  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Zebrafish  ======================================================================
B D                    Medaka  ======================================================================
B D             X. tropicalis  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D               Stickleback  ======================================================================
B D       Medium ground finch  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
          Southern platyfish  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
  D              Mallard duck  ======================================================================
            Cape golden mole  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                    Lizard  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D               Zebra finch  ======================================================================
  D       Collared flycatcher  ======================================================================

                        Human  -----------------------cc----tgctc
                        Chimp  -----------------------cc----tgctc
                      Gorilla  -----------------------cc----tgctc
                    Orangutan  -----------------------cc----tgctc
                       Gibbon  -----------------------cc----tgctc
                       Rhesus  -----------------------cc----tgctc
          Crab-eating macaque  -----------------------cc----tgctc
                       Baboon  -----------------------cc----tgctc
                 Green monkey  -----------------------cc----tgctc
                     Bushbaby  -----------------------cc----cactc
           Chinese tree shrew  -----------------------cc----tgctc
                     Squirrel  ------------------cctac-----------
       Lesser Egyptian jerboa  ----------------------------------
                 Prairie vole  ggtgaaagtagacagctc----------------
               Golden hamster  ----------------------------------
                        Mouse  ----------------------------------
                          Rat  ----------------------------------
               Naked mole-rat  -----------------------cc----tactc
                   Guinea pig  -----------------------cc----tgcta
                   Chinchilla  -----------------------cc----tgctc
             Brush-tailed rat  -----------------------cc----tgctc
                       Rabbit  ----------------------------------
                         Pika  ----------------------------------
                          Pig  -----------------------gc----t----
                       Alpaca  -----------------------cc---tt----
               Bactrian camel  -----------------------cc---tt----
                      Dolphin  -----------------------cc----t----
                 Killer whale  -----------------------cc----t----
             Tibetan antelope  -----------------------ca----t----
                          Cow  -----------------------aa----t----
                        Sheep  -----------------------ca----t----
                Domestic goat  -----------------------ca----t----
             White rhinoceros  -----------------------cg----t----
                          Cat  -----------------------cc----t----
                          Dog  -----------------------tc----t----
                      Ferret   ----------------------------------
                        Panda  -----------------------cc----c----
               Pacific walrus  -----------------------cc----t----
                 Weddell seal  -----------------------cc----g----
             Black flying-fox  -----------------------ca----t----
                      Megabat  -----------------------ca----t----
                Big brown bat  -----------------------cc----t----
         David's myotis (bat)  -----------------------cc----t----
                     Microbat  -----------------------cc----t----
                     Hedgehog  -----------------------cc----t----
                        Shrew  -----------------------gt----c----
              Star-nosed mole  -----------------------ct----g----
                     Elephant  -----------------------ctactct----
          Cape elephant shrew  -----------------------ctactct----
                      Manatee  -------------------------gctct----
                     Aardvark  -----------------------ctacatt----
                    Armadillo  -----------------------cttactt----
                       Tenrec  ==================================
              Chinese hamster  ==================================
              Squirrel monkey  ==================================
                     Marmoset  ----------------------------------
                        Horse  ==================================
          Pundamilia nyererei  ==================================
                  Zebra mbuna  ==================================
        Burton's mouthbreeder  ==================================
                    Tetraodon  ==================================
          Princess of Burundi  ==================================
       Yellowbelly pufferfish  ==================================
                    Zebrafish  ==================================
                       Medaka  ==================================
                X. tropicalis  ==================================
                       Turkey  ==================================
                      Chicken  ==================================
                Scarlet macaw  ==================================
                   Budgerigar  ==================================
           Tibetan ground jay  ==================================
             Peregrine falcon  ==================================
                 Saker falcon  ==================================
                  Rock pigeon  ==================================
                  Stickleback  ==================================
          Medium ground finch  ==================================
                   Coelacanth  ==================================
                  Spotted gar  ==================================
           Southern platyfish  ==================================
                 Nile tilapia  ==================================
                         Fugu  ==================================
                 Mallard duck  ==================================
             Cape golden mole  ==================================
     Chinese softshell turtle  ==================================
               Painted turtle  ==================================
              Green seaturtle  ==================================
              Tasmanian devil  ==================================
                       Lizard  ==================================
                     Platypus  ==================================
           American alligator  ==================================
                  Zebra finch  ==================================
          Collared flycatcher  ==================================

Inserts between block 1 and 2 in window
                Prairie vole 112bp

Alignment block 2 of 161 in window, 50312913 - 50312918, 6 bps 
B D                     Human  tgta---ct
B D                     Chimp  tgta---ct
B D                   Gorilla  tgta---ct
B D                 Orangutan  tgta---ct
B D                    Gibbon  tgta---ct
B D                    Rhesus  tgta---ct
B D       Crab-eating macaque  tgta---ct
B D                    Baboon  tgta---ct
B D              Green monkey  tgta---ct
B D                  Bushbaby  tgtc---ct
           Chinese tree shrew  tgtt---tt
B D                  Squirrel  tata---ct
       Lesser Egyptian jerboa  agca---ct
                 Prairie vole  tgca---ca
               Golden hamster  tgag---ct
B D                     Mouse  -------ct
B D                       Rat  -------ct
B D            Naked mole-rat  --ct---ct
B D                Guinea pig  --gt---cc
                   Chinchilla  --ct---ct
             Brush-tailed rat  --tt---tt
B D                    Rabbit  agtt---ct
B D                  Elephant  ---t---ct
          Cape elephant shrew  ---t---ct
B D                   Manatee  ---t---ct
                     Aardvark  ---t---ct
B D                 Armadillo  ---tgtact
B D                    Tenrec  =========
B D                  Hedgehog  ---------
B D                     Shrew  ---------
B D           Chinese hamster  =========
             Star-nosed mole  ---------
B D                      Pika  ---------
B D                       Dog  ---------
B D                     Panda  ---------
B D                   Ferret   ---------
B D           Squirrel monkey  =========
        David's myotis (bat)  ---------
B D                  Microbat  ---------
               Big brown bat  ---------
B D                       Cow  ---------
               Domestic goat  ---------
B D                     Sheep  ---------
            Tibetan antelope  ---------
                Killer whale  ---------
B D                    Alpaca  ---------
              Bactrian camel  ---------
            Black flying-fox  ---------
B D                  Marmoset  ---------
B D                       Cat  ---------
              Pacific walrus  ---------
B D          White rhinoceros  ---------
B D                     Horse  =========
B D                       Pig  ---------
                Weddell seal  ---------
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
B D                 Tetraodon  =========
         Princess of Burundi  =========
B D                   Dolphin  ---------
      Yellowbelly pufferfish  =========
B D                 Zebrafish  =========
B D                    Medaka  =========
B D             X. tropicalis  =========
B D                    Turkey  =========
B D                   Chicken  =========
  D             Scarlet macaw  =========
B D                Budgerigar  =========
          Tibetan ground jay  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
  D               Rock pigeon  =========
B D               Stickleback  =========
B D       Medium ground finch  =========
B D                Coelacanth  =========
                 Spotted gar  =========
          Southern platyfish  =========
B D              Nile tilapia  =========
B D                      Fugu  =========
  D              Mallard duck  =========
            Cape golden mole  =========
B D                   Megabat  ---------
  D  Chinese softshell turtle  =========
  D            Painted turtle  =========
  D           Green seaturtle  =========
B D           Tasmanian devil  =========
B D                    Lizard  =========
B D                  Platypus  =========
B D        American alligator  =========
B D               Zebra finch  =========
  D       Collared flycatcher  =========

Inserts between block 2 and 3 in window
                Prairie vole 72bp

Alignment block 3 of 161 in window, 50312919 - 50312970, 52 bps 
B D                     Human  cgacccggcactg-ggtaccggaagaaccaga--c---ag-ctcgg-------tttttgccaccat
B D                     Chimp  ggacccggcactg-ggtaccggaagaaccaga--c---ag-ctcgg-------tttttgccaccat
B D                   Gorilla  cgacccggcactg-ggtaccggaagaaccaga--c---ag-ctcgg-------tttttgccaccat
B D                 Orangutan  ggacccggcactg-ggtaccggaagaaccaga--c---ag-ctcgg-------tttttgccaccat
B D                    Gibbon  ggacccggcactg-ggtaccggaagaaccaga--c---ag-ctcgg-------tttttgccaccat
B D                    Rhesus  ggacccggcgttg-ggtaccggatgaaccaga--c---ag-ctcgg-------tctttgccaccat
B D       Crab-eating macaque  ggacccggcgttg-ggtaccggatgaaccaga--c---ag-ctcgg-------tctttgccaccat
B D                    Baboon  ggacccggcattg-ggtaccggataaaccaga--c---ag-ctcgg-------tctttgccaccat
B D              Green monkey  ggacccggcattg-ggtaccggatgaaccaga--c---ag-ctcgg-------tctttgccaccat
B D                  Bushbaby  ggaccgggcgctg-ggtcccggatgaaccggg--c---tg-tccgg-------cctctgccgtcac
           Chinese tree shrew  ggaccgggctctg-ggtatgggatgaaccaga--t---ag-ttctg-------cc-ctgcgatcgt
B D                  Squirrel  ggaccgagcactg----------agtactgga--t---gg-ccagacagtttaatctcgccatcat
       Lesser Egyptian jerboa  agcctgggcaccg----------ggtaccaga--t--gaa-ctctt------------ctcatcat
                 Prairie vole  catgtgggcgctg----------ggaaccaac--cctagg-tcctt-ggtcaagaccagttagcag
B D           Chinese hamster  caagtgggcgctg----------gaaaccaaa--cccaag-tcctg-gggcaaggccagttagcag
               Golden hamster  -agctaggtgctg-g-t------gaaagtaga--caagag-ctccg-------tccctctcatcat
B D                     Mouse  gagctaggcgctg-gat------gaaagtaga--c---gg-ctcgg-------tctctgtcgtcat
B D                       Rat  gagctaggcgctg-gat------ggaagtaga--c---ag-ctcgg-------tcccggtcatcat
B D            Naked mole-rat  gggccaggcactg-ggtcctggatgaaccaca--c---ag-cgtag-------gctt--ccattat
B D                Guinea pig  aaaccgcgcactg-ggttctggatgaacttga--c---ag-cgtag-------tctcggccgtcac
                   Chinchilla  gcaccgggcactg-ggttctggatgagctaaa--c---ag-cgggg-------cctcggccatcgc
             Brush-tailed rat  gcacc-ggcactg-ggttccggatgaactaga--t---gg-cgtaa-------cctcggccatcac
B D                    Rabbit  gggcggggcactg----------gggactgga--t---gg-acaga-gagcttggtctatcagcgt
B D                      Pika  ------ggcacag----------gggatcgg-----------------------------------
B D                       Pig  --------------------tggtgaaccaga--g---gg-cttgg-------tctctataattat
B D                    Alpaca  --------------------agatgaacctga--t---gg-ctcgg-------tctctgccatcat
               Bactrian camel  --------------------agatgaatctga--c---gg-ctcgg-------tctctgccatcat
B D                   Dolphin  --------------------aaatgaaccaga--c---gt-ctcgg-------tctctgacatcat
                 Killer whale  --------------------aaatgaaccaga--c---gt-ctcgg-------tctctgacatcat
             Tibetan antelope  --------------------aaatgaaacaga--c---gg-ctcgg-------tctctgccgtcat
B D                       Cow  --------------------aaatgaaacaga--c---gg-ctcgg-------tctctgccatcat
B D                     Sheep  --------------------aaatgaaacaga--c---tg-ctcgg-------tctctgccgtcat
                Domestic goat  --------------------aaacgaaacaga--c---gg-ctcgg-------tctctgccgtcat
B D          White rhinoceros  --------------------agggga--caga--c---gg-ctggg-------tctcggccatcac
B D                       Cat  --------------------agaagaaccaga--t---gg-ctctg-------tctctgccatcat
B D                       Dog  --------------------aggagaaccaga--c----g-cgcgg-------tcttcgccgtcgt
B D                   Ferret   --------------------------------------------------------ctgctatcat
B D                     Panda  --------------------agaagaaccagg--c---gg-ctcgg-------tccctgccaccat
               Pacific walrus  --------------------ggaagaaccaga--c---gg-ctcgg-------tctctgccatcat
                 Weddell seal  --------------------ggaagaaccgga--c---gg-ctcgg-------tctctgccatcat
             Black flying-fox  --------------------agatgagccaga--c---gg-ctcgg-------tctctgccatcat
B D                   Megabat  --------------------agatgaaccaga--c---gg-ctcgg-------tctctgccatcat
                Big brown bat  --------------------ggctgaaataggccc---cg-ctcgg-------ccgcggccatcct
         David's myotis (bat)  --------------------cgatgacccaggccc---cg-ctcgg-------cctcggccatcgt
B D                  Microbat  --------------------cgatgacccaggccc---cg-ctcgg-------cctcggccatcgt
B D                  Hedgehog  --------------------acatgaaccagg--c---ga-cttgg-------ttcctgccatcat
B D                     Shrew  --------------------acgttgacc-------------------------------------
              Star-nosed mole  --------------------agatgagccaga--------------------------------at
B D                  Elephant  gcaccgggtaccggggtacggggtggaccgga--c---ag-ctggg-------tctccgccatctt
          Cape elephant shrew  tctccagg--------------------ctga--c---agatttga-------tctccactgtcat
B D                   Manatee  ccaccgggcactggggtactcggtgac-caga--c---ag-ctcgg-------tctccgccatatt
                     Aardvark  ccagcgggcactgtagtacccagtgaacaaga--c---ag-ctcgg-------tctccaccgtca-
B D                 Armadillo  ggactgggcgctacggtaccgacagaactatg--t---ag-attgg-------cctctatcatcat
B D                    Tenrec  ==================================================================
B D           Squirrel monkey  ==================================================================
B D                  Marmoset  ------------------------------------------------------------------
B D                     Horse  ==================================================================
         Pundamilia nyererei  ==================================================================
                 Zebra mbuna  ==================================================================
       Burton's mouthbreeder  ==================================================================
B D                 Tetraodon  ==================================================================
         Princess of Burundi  ==================================================================
      Yellowbelly pufferfish  ==================================================================
B D                 Zebrafish  ==================================================================
B D                    Medaka  ==================================================================
B D             X. tropicalis  ==================================================================
B D                    Turkey  ==================================================================
B D                   Chicken  ==================================================================
  D             Scarlet macaw  ==================================================================
B D                Budgerigar  ==================================================================
          Tibetan ground jay  ==================================================================
  D          Peregrine falcon  ==================================================================
  D              Saker falcon  ==================================================================
  D               Rock pigeon  ==================================================================
B D               Stickleback  ==================================================================
B D       Medium ground finch  ==================================================================
B D                Coelacanth  ==================================================================
                 Spotted gar  ==================================================================
          Southern platyfish  ==================================================================
B D              Nile tilapia  ==================================================================
B D                      Fugu  ==================================================================
  D              Mallard duck  ==================================================================
            Cape golden mole  ==================================================================
  D  Chinese softshell turtle  ==================================================================
  D            Painted turtle  ==================================================================
  D           Green seaturtle  ==================================================================
B D           Tasmanian devil  ==================================================================
B D                    Lizard  ==================================================================
B D                  Platypus  ==================================================================
B D        American alligator  ==================================================================
B D               Zebra finch  ==================================================================
  D       Collared flycatcher  ==================================================================

Inserts between block 3 and 4 in window
B D                      Rat 559bp

Alignment block 4 of 161 in window, 50312971 - 50312984, 14 bps 
B D                     Human  ttataagtctg----tgt
B D                     Chimp  ttataattctg----tgt
B D                   Gorilla  ttataagtctg----tgt
B D                 Orangutan  ttatcagtctg----tgt
B D                    Gibbon  ttatcagtctg----tgt
B D                    Rhesus  ttatcagtctg----tgc
B D       Crab-eating macaque  ttatcagtctg----tgc
B D                    Baboon  ttatcagtctg----tgc
B D              Green monkey  ttatcagtcta----tgt
B D                  Bushbaby  ttagcag--tg----tgt
           Chinese tree shrew  ttagcaatccg----tat
B D                  Squirrel  ttaccgatctg----tgt
       Lesser Egyptian jerboa  ttagtactcta----tgg
                 Prairie vole  -ttttaa-ccg----cgg
B D           Chinese hamster  -tcttaa-cca----cgg
               Golden hamster  -t-------------cag
B D                     Mouse  ----------t----tag
B D            Naked mole-rat  ttagcaatctg----gaa
B D                Guinea pig  ttagcaacctg----ggg
                   Chinchilla  ttagcaatc-g----ggg
             Brush-tailed rat  ctagtaatctg----gga
B D                    Rabbit  tcatcagtctg----tgc
B D                       Pig  ttagcaatctg----ttt
B D                    Alpaca  ttagcaatata----cgt
               Bactrian camel  ttagcaatata----cgt
B D                   Dolphin  ttagcaatcta----ttt
                 Killer whale  ttagcaatcta----ttt
             Tibetan antelope  ttagtgatctg----ttt
B D                       Cow  ttagcgatctg----ttt
B D                     Sheep  ttagcgatctg----ttt
                Domestic goat  ttagcgatctg----ttt
B D          White rhinoceros  ctaccagtacg----tgt
B D                       Cat  taggcagtctg----ttt
B D                       Dog  gtaactgtctg----ttt
B D                   Ferret   ttagcagccgg----ttt
B D                     Panda  ttagcagtctg----ctg
               Pacific walrus  ttagcagtctg----cta
                 Weddell seal  ttagcagtctg----cta
             Black flying-fox  ttagcaatctc----ttt
B D                   Megabat  ttagcaatctc----ttt
                Big brown bat  tgagcgatctg----ttt
         David's myotis (bat)  ttagcgacctg----ttt
B D                  Microbat  ttagcgaccgg----ttt
B D                  Hedgehog  ttagccatctacccctcc
B D                     Shrew  --------ctg----gtt
              Star-nosed mole  ttaggaatctg----ttt
B D                  Elephant  ttagcaatctg----tg-
          Cape elephant shrew  ttaataatctg----tgt
B D                   Manatee  ttagcaatctg----tgt
                     Aardvark  --agcaatctt----tgc
B D                 Armadillo  ttg--aatatg----ggt
B D                       Rat  ==================
B D                    Tenrec  ==================
B D                      Pika  ------------------
B D           Squirrel monkey  ==================
B D                  Marmoset  ------------------
B D                     Horse  ==================
         Pundamilia nyererei  ==================
                 Zebra mbuna  ==================
       Burton's mouthbreeder  ==================
B D                 Tetraodon  ==================
         Princess of Burundi  ==================
      Yellowbelly pufferfish  ==================
B D                 Zebrafish  ==================
B D                    Medaka  ==================
B D             X. tropicalis  ==================
B D                    Turkey  ==================
B D                   Chicken  ==================
  D             Scarlet macaw  ==================
B D                Budgerigar  ==================
          Tibetan ground jay  ==================
  D          Peregrine falcon  ==================
  D              Saker falcon  ==================
  D               Rock pigeon  ==================
B D               Stickleback  ==================
B D       Medium ground finch  ==================
B D                Coelacanth  ==================
                 Spotted gar  ==================
          Southern platyfish  ==================
B D              Nile tilapia  ==================
B D                      Fugu  ==================
  D              Mallard duck  ==================
            Cape golden mole  ==================
  D  Chinese softshell turtle  ==================
  D            Painted turtle  ==================
  D           Green seaturtle  ==================
B D           Tasmanian devil  ==================
B D                    Lizard  ==================
B D                  Platypus  ==================
B D        American alligator  ==================
B D               Zebra finch  ==================
  D       Collared flycatcher  ==================

Inserts between block 4 and 5 in window
                Prairie vole 2bp
B D          Chinese hamster 2bp
              Golden hamster 2bp
B D                    Mouse 4bp

Alignment block 5 of 161 in window, 50312985 - 50312993, 9 bps 
B D                     Human  cc--------ttttct---t-
B D                     Chimp  cc--------ttttct---t-
B D                   Gorilla  cc--------ttttct---t-
B D                 Orangutan  cc--------ttttct---t-
B D                    Gibbon  cc--------ttttct---t-
B D                    Rhesus  cc--------ttttct---c-
B D       Crab-eating macaque  cc--------ttttct---c-
B D                    Baboon  cc--------ttttct---c-
B D              Green monkey  cc--------ttttct---c-
B D                  Bushbaby  cc--------ttgtct---t-
           Chinese tree shrew  cc--------tt-tct---t-
B D                  Squirrel  cc--------ttttct-----
       Lesser Egyptian jerboa  cc--------ttgtctt----
                 Prairie vole  ct--------ttctct-----
B D           Chinese hamster  cc--------ttctct-----
               Golden hamster  cc--------tcctcc-----
B D                     Mouse  gt--------tttttt-----
B D                       Rat  ct--------ttccct-----
B D            Naked mole-rat  cc--------ttttct-t---
B D                Guinea pig  tg--------ttttct-t---
                   Chinchilla  cc--------ttctct-t---
             Brush-tailed rat  cc--------ttttct-t---
B D                    Rabbit  ct--------ttttct--g--
B D                       Pig  cc--------ttttct-----
B D                    Alpaca  cg--------ttttct-----
               Bactrian camel  ca--------ttttct-----
B D                   Dolphin  cc--------tttttt---a-
                 Killer whale  cc--------tttttt-----
             Tibetan antelope  cc---ttttttttttt---t-
B D                       Cow  cc--------tttttt---t-
B D                     Sheep  cctttttttttttttt---t-
                Domestic goat  cc----tttttttttt---t-
B D          White rhinoceros  cc--------tcgtct-----
B D                       Cat  cc--------ttgtct-----
B D                       Dog  cc--------ttatct-----
B D                   Ferret   cc--------tt---------
B D                     Panda  ct--------ttatct-----
               Pacific walrus  cc--------tt---g-----
                 Weddell seal  cc--------ttaccg-----
             Black flying-fox  cc--------tt---------
B D                   Megabat  cc--------tt---------
                Big brown bat  cc--------tcaccg-----
         David's myotis (bat)  cc--------tggtcg-----
B D                  Microbat  cc--------tggtcg-----
B D                  Hedgehog  cc--------ttttct-----
B D                     Shrew  ct--------tt--cc-----
              Star-nosed mole  cc--------tttact-----
B D                  Elephant  ------------tcct----t
          Cape elephant shrew  tc--------ttttct----t
B D                   Manatee  cc--------tcttct----t
                     Aardvark  cc--------ttttct-----
B D                 Armadillo  cc--------ttttct----t
B D                    Tenrec  =====================
B D                      Pika  ---------------------
B D           Squirrel monkey  =====================
B D                  Marmoset  ---------------------
B D                     Horse  =====================
         Pundamilia nyererei  =====================
                 Zebra mbuna  =====================
       Burton's mouthbreeder  =====================
B D                 Tetraodon  =====================
         Princess of Burundi  =====================
      Yellowbelly pufferfish  =====================
B D                 Zebrafish  =====================
B D                    Medaka  =====================
B D             X. tropicalis  =====================
B D                    Turkey  =====================
B D                   Chicken  =====================
  D             Scarlet macaw  =====================
B D                Budgerigar  =====================
          Tibetan ground jay  =====================
  D          Peregrine falcon  =====================
  D              Saker falcon  =====================
  D               Rock pigeon  =====================
B D               Stickleback  =====================
B D       Medium ground finch  =====================
B D                Coelacanth  =====================
                 Spotted gar  =====================
          Southern platyfish  =====================
B D              Nile tilapia  =====================
B D                      Fugu  =====================
  D              Mallard duck  =====================
            Cape golden mole  =====================
  D  Chinese softshell turtle  =====================
  D            Painted turtle  =====================
  D           Green seaturtle  =====================
B D           Tasmanian devil  =====================
B D                    Lizard  =====================
B D                  Platypus  =====================
B D        American alligator  =====================
B D               Zebra finch  =====================
  D       Collared flycatcher  =====================

Inserts between block 5 and 6 in window
                Prairie vole 12bp
B D          Chinese hamster 22bp
              Golden hamster 316bp
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 3bp
                Killer whale 3bp
            Tibetan antelope 3bp
B D                      Cow 3bp
B D                    Sheep 3bp
               Domestic goat 3bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                 Hedgehog 1bp
B D                    Shrew 1bp
             Star-nosed mole 1bp

Alignment block 6 of 161 in window, 50312994 - 50312999, 6 bps 
B D                     Human  gag-tac
B D                     Chimp  gag-tac
B D                   Gorilla  gag-tac
B D                 Orangutan  gag-tac
B D                    Gibbon  gag-tac
B D                    Rhesus  gag-tac
B D       Crab-eating macaque  gag-tac
B D                    Baboon  gag-tac
B D              Green monkey  gag-tac
B D                  Bushbaby  aaa-cac
           Chinese tree shrew  aaa-ttc
       Lesser Egyptian jerboa  aaa-tac
                 Prairie vole  tgt-cac
B D           Chinese hamster  ----cac
               Golden hamster  aat-cac
B D                     Mouse  ggt-ttc
B D                       Rat  aat-cac
B D            Naked mole-rat  aaa-tac
B D                Guinea pig  aag-cac
                   Chinchilla  aaa-tcc
             Brush-tailed rat  aaa-ttc
B D                    Rabbit  aaa-tcc
B D                       Pig  aaa-tcc
B D                    Alpaca  aaa-tcc
               Bactrian camel  aaa-tcc
B D                   Dolphin  aaa-tcc
                 Killer whale  aaa-ccc
             Tibetan antelope  taa-tac
B D                       Cow  taa-tac
B D                     Sheep  taa-tac
                Domestic goat  aaa-tac
B D          White rhinoceros  aga-tcc
B D                       Cat  aaa-tcc
B D                       Dog  aaa-cgc
B D                   Ferret   aaa-tac
B D                     Panda  aga-tac
               Pacific walrus  aaa-tac
                 Weddell seal  aaa-tac
             Black flying-fox  --a-aac
B D                   Megabat  --a-aac
                Big brown bat  taa-tac
         David's myotis (bat)  taa-cac
B D                  Microbat  taa-cac
B D                  Hedgehog  aaatttc
B D                     Shrew  aaaatta
              Star-nosed mole  aaagttc
B D                  Elephant  aaa-tag
          Cape elephant shrew  aaa-taa
B D                   Manatee  aaa-tag
                     Aardvark  ----tgg
B D                 Armadillo  aaa-tat
B D                    Tenrec  =======
B D                      Pika  -------
B D           Squirrel monkey  =======
B D                  Marmoset  -------
B D                     Horse  =======
B D                  Squirrel  -------
         Pundamilia nyererei  =======
                 Zebra mbuna  =======
       Burton's mouthbreeder  =======
B D                 Tetraodon  =======
         Princess of Burundi  =======
      Yellowbelly pufferfish  =======
B D                 Zebrafish  =======
B D                    Medaka  =======
B D             X. tropicalis  =======
B D                    Turkey  =======
B D                   Chicken  =======
  D             Scarlet macaw  =======
B D                Budgerigar  =======
          Tibetan ground jay  =======
  D          Peregrine falcon  =======
  D              Saker falcon  =======
  D               Rock pigeon  =======
B D               Stickleback  =======
B D       Medium ground finch  =======
B D                Coelacanth  =======
                 Spotted gar  =======
          Southern platyfish  =======
B D              Nile tilapia  =======
B D                      Fugu  =======
  D              Mallard duck  =======
            Cape golden mole  =======
  D  Chinese softshell turtle  =======
  D            Painted turtle  =======
  D           Green seaturtle  =======
B D           Tasmanian devil  =======
B D                    Lizard  =======
B D                  Platypus  =======
B D        American alligator  =======
B D               Zebra finch  =======
  D       Collared flycatcher  =======

Inserts between block 6 and 7 in window
B D                    Mouse 1134bp

Alignment block 7 of 161 in window, 50313000 - 50313036, 37 bps 
B D                     Human  tgaaccgagataca----gt------ttta-aatgtgctgtgc-g-gtct
B D                     Chimp  tgaaccgagataca----gt------ttta-aatgtgctgtgc-g-gtct
B D                   Gorilla  tgaaccgagataca----gt------ttta-aatgtgctgtgc-g-gtct
B D                 Orangutan  cgaaccgagataca----gt------ttta-aatgtgctgtgc-g-gtct
B D                    Gibbon  tgaaccgagataca----gt------ttta-aatgtgctgtgc-g-gtct
B D                    Rhesus  tgaaccgaaat-ca----gt------ttta-aatgtgctgtgc-g-ggct
B D       Crab-eating macaque  tgaaccgaaataca----gt------ttta-aatgtgctgtgc-g-ggct
B D                    Baboon  tgaaccgaaataca----gt------ttta-aatgtgctgtgc-g-ggct
B D              Green monkey  tgaaccgaaatgca----gt------ttta-aatgtgctctgc-g-ggct
B D                  Bushbaby  cacaccgagacacc----gt------ttcg-gatatg-tctct-g-gcct
           Chinese tree shrew  tggaccgagatgcc----at------ttaa-atgattctctgcgg-gtct
B D                  Squirrel  ------------ca----gt------ttta-aaaatgctctct-ggaact
       Lesser Egyptian jerboa  tggaccgaggtaca----gt------ttta-aatatgctgtcc-gagccg
                 Prairie vole  tggaccaagaca------gt------ttta-aa-----tgtcc-atgtct
B D           Chinese hamster  tggaccaagacacg----gt------ttta-aa-----tatcc-acgtct
               Golden hamster  tggaccaagactcg----gt------ttta-aa-----aattc-atgtct
B D                     Mouse  tagactaagagaga----gc------ttta-aa-----tgtcc-atgcct
B D                       Rat  tggactaagtaagatacggt------ttta-aa-----tgtcc-ttgcct
B D            Naked mole-rat  tgggccgagctaca----gt------tata-at-gtgctgtcc-g-gact
B D                Guinea pig  ggggtcgagattca----gt------ttta-at-atgccttcc-g-ggct
                   Chinchilla  tgggccgagataca----gt------ttaa-at-actccgtcc-g-ggct
             Brush-tailed rat  tgggcggagataca----g-------------------------------
B D                    Rabbit  tgggccaacataaca---gt------tgta-aa-----------------
B D                       Pig  tggaccgagataca----gt------ttta-aatatgctgtgc-ggggct
B D                    Alpaca  tagaccaagataca----ct------tcta-aatatgctgggc-gggcct
               Bactrian camel  tagaccaagataca----ct------tcta-aatatgctgggc-gggcct
B D                   Dolphin  tggaccgagatata----ct------ttta-aatatgctgtgc-gggcct
                 Killer whale  tggaccgagatata----ct------ttta-aatatgctgtgc-gggcct
             Tibetan antelope  tgtcctgacatgtg----gt------ttta-aatatgctttgc-aggcct
B D                       Cow  tggactgacatgta----gt------ttta-aatatgctttgc-gggcct
B D                     Sheep  tggcc-------tg----gt------ttta-aatatgctttgc-aggcct
                Domestic goat  tggcctgacatgtg----gt------ttta-aatatgctttgc-aggcct
B D          White rhinoceros  ggggccgaga-------------------------tgctgtgc-ggg-cc
B D                       Cat  tgggtggagataca----ga------ttta-aacccactgtgc-ggacct
B D                       Dog  tgggtggagacggg----gt------ttta-aatatgctgtgc-ggggct
B D                   Ferret   tgggtcgagatacg----gt------ttta-aacatgttgcgc-ggggct
B D                     Panda  tgcgtcgagatacg----gt------ttta-aatatgctgtgt-ggggct
               Pacific walrus  tgggtcgagatacg----gt------ttta-aatatgctgtgc-ggggct
                 Weddell seal  tgggtcgagatacg----gt------tttc-aatatgctgtgc-ggggct
             Black flying-fox  taggccgaggtacg----at------ttttaaatatgctgtac-aggcct
B D                   Megabat  taggccgaggtacg----at------ttttaaatatgctgtac-aggcct
                Big brown bat  tgggccgagagaca----gt------gttc-catacgccttgc-gggcct
         David's myotis (bat)  ggggccgagataca----gt------tttc-agtaccccgcgc-gggcct
B D                  Microbat  ggggccgagataca----gt------tttc-agtaccccgcgc-gggcct
B D                  Hedgehog  tggaccagtatata----cttatttatata-aatatagataga-tatact
B D                     Shrew  agggctg-tttcca----gc---------g-ggttt---gtgc-ggtact
              Star-nosed mole  tggtccgagttaca----gc------ttta-agtatgccgtgc-aggcct
B D                  Elephant  tggaccgagataca----ct------ttta-gttatgctgtat-gagcg-
          Cape elephant shrew  tgggcagaaat--a----gt------ttta-ggtatgctgtat-gggct-
B D                   Manatee  tggaccgaggtaca----gt------ttca-gatatgttatat-gggct-
                     Aardvark  tgaaccgagattca----gt------gtca-gatacactgtat-gggct-
B D                 Armadillo  tggaccgagataca----gt------ttaa-gataggttttgt-gaccc-
B D                    Tenrec  ==================================================
B D                      Pika  --------------------------------------------------
B D           Squirrel monkey  ==================================================
B D                  Marmoset  --------------------------------------------------
B D                     Horse  ==================================================
         Pundamilia nyererei  ==================================================
                 Zebra mbuna  ==================================================
       Burton's mouthbreeder  ==================================================
B D                 Tetraodon  ==================================================
         Princess of Burundi  ==================================================
      Yellowbelly pufferfish  ==================================================
B D                 Zebrafish  ==================================================
B D                    Medaka  ==================================================
B D             X. tropicalis  ==================================================
B D                    Turkey  ==================================================
B D                   Chicken  ==================================================
  D             Scarlet macaw  ==================================================
B D                Budgerigar  ==================================================
          Tibetan ground jay  ==================================================
  D          Peregrine falcon  ==================================================
  D              Saker falcon  ==================================================
  D               Rock pigeon  ==================================================
B D               Stickleback  ==================================================
B D       Medium ground finch  ==================================================
B D                Coelacanth  ==================================================
                 Spotted gar  ==================================================
          Southern platyfish  ==================================================
B D              Nile tilapia  ==================================================
B D                      Fugu  ==================================================
  D              Mallard duck  ==================================================
            Cape golden mole  ==================================================
  D  Chinese softshell turtle  ==================================================
  D            Painted turtle  ==================================================
  D           Green seaturtle  ==================================================
B D           Tasmanian devil  ==================================================
B D                    Lizard  ==================================================
B D                  Platypus  ==================================================
B D        American alligator  ==================================================
B D               Zebra finch  ==================================================
  D       Collared flycatcher  ==================================================

Inserts between block 7 and 8 in window
B D                 Elephant 1bp
         Cape elephant shrew 8248bp
B D                  Manatee 1bp
                    Aardvark 1bp

Alignment block 8 of 161 in window, 50313037 - 50313144, 108 bps 
B D                     Human  ctgagca-gcgactcac-c-tgtgcaggtcacttca-cc------tgattccctttatgtaaaaatgagg
B D                     Chimp  ctgagca-gcgactcac-c-tgtgcaggtcacttca-cc------tgattccctttatgtaaaaatgagg
B D                   Gorilla  ctgagca-gcgactcac-c-tgtgcaggtcacttca-cc------tgattccctttatgtaaaaatgagg
B D                 Orangutan  ctgagca-gcgactcac-c-tgtgcaggtcacttca-cc------tgattccctttctgtaaaaatgagg
B D                    Gibbon  ctgagca-gcgactcac-c-tgtgcaggtaacttca-cc------tgattccctttctgtaaaaatgagg
B D                    Rhesus  ctgagca-gcgactcac-c-tgtacaggtcacttca-cc------tgattcccattctgtaaaaatgagg
B D       Crab-eating macaque  ctgagca-gcgactcac-c-tgtacaggtcacttca-cc------tgattcccattctgtaaaaatgagg
B D                    Baboon  ctgagca-gcgactcac-t-tgtacaggtcacttca-cc------tgattcccattctgtaaaaatgagg
B D              Green monkey  ctgagca-gcgactcac-c-tgtacaggtcacttca-cc------tgattcccattctgtaaaaatgagg
B D                  Bushbaby  ctgaacg-gcggctcac-c-tgtagaggcc--------------------------------cgaggagg
           Chinese tree shrew  cggaaca-gcaactcac-a-tgtgcagttcacctta-cc------tgtttcttaaaactgtaaaatgata
B D                  Squirrel  cggaaca-gcgaatcac-c-tgtgcatgtcacttca-tc----gcaatttccttatctgtaaaattaa-g
       Lesser Egyptian jerboa  cagaaca-gcggctcac-------ttgggcatatga-cc----cgtgttttcttatctat-aaaatga--
                 Prairie vole  tagaata-gccattcac---ggagcaggtctcttta-ct-----gtgtttcctctactgtaaaaatga--
B D           Chinese hamster  tagaaca-gcc-ctcat---ggagcaggtcacttta-tt----cgtgtttcctctactgtaaaaatga--
               Golden hamster  tagaaca-gccactcat---ggaacaggttacttta-tt----cgtgtttcctctactgt-aaaatga--
B D                     Mouse  ccagata-gccactcac---aggggagggc-----a-ct----tgtgtttcctccactgtaaaaatga--
B D                       Rat  caggaca-gccactcac---agagcaaggcac-tta-ct----tgtgtttcctctactgtaaaaatga--
B D            Naked mole-rat  cg----------ccggc-c-acttca-----------cc----tctgcttgcttacctgt-cagatgaag
B D                Guinea pig  ccgaacg-ctcggcgac-c-tgtgcagg---ctctt-cc----ctagattgcttacctgt-cagatgaag
                   Chinchilla  cggagca-gc--gcgcc-a-gctgcagg---ctcgt-cc----cctgattgcttatcggt-cagatgaag
             Brush-tailed rat  ------------------------------------------------ttgcttacctgt-caggtgaag
B D                    Rabbit  ------------ttcacct-tgtacaggtcggctca-cc----tctgtttccttacctgt-aatgtgcgg
B D                      Pika  ------------------c-cgtgcgagatgcctca-tt----tct-ctgctttacctgg-gaagcgagg
B D                       Pig  aagaata-gcgactcac-c-tgtgcaggtcacttca-ga----tc----tgtttatctgt-aaaatgaag
B D                    Alpaca  gggaacg-gcgggtcac-c-tgtgcaggtcacttca-ccgctgtt----tgtttatctga-aaaatgagg
               Bactrian camel  gggaaga-gcgggtcac-c-tgtgcaggtcacttca-ccgctgct----tgtttatctga-aaaatgagg
B D                   Dolphin  gggaaca-gcgactcac-c-tgtgcaggtcacttca-cc----cc----tgtttatctgt-aaaatgagg
                 Killer whale  gggaaca-gcgactcac-c-tgtgcaggtcacttca-cc----cc----tgtttatctgt-aaaatgagg
             Tibetan antelope  ggaaaca-atgattcac-c-tgtgcatgtcacttca-cc----cg----tgtttagctat-aaaatgagg
B D                       Cow  agaaaca-gtgattcac-c-tgtgcatgtcacttca-cc----cc----tgtttagctgt-aaaatgagg
B D                     Sheep  ggaaaca-atgattcac-c-tgtgcatgtcacttca-cc----cc----tgtttagctat-aaaatgagg
                Domestic goat  ggaaaca-atgattcac-c-tgtgcatatcacttca-cc----cc----tgtttagctat-aagatgagg
B D          White rhinoceros  gggggca-gcgaccctc-c-tgt-ccggtcccttcagcg----ct-gctcccttctctgt-gaaatgagg
B D                       Cat  gggaatacggggctctt-c-tgtacaggtctcttca-cc----cc-gtgtccttatctgt-aaagtgaag
B D                       Dog  gcggac--gcgcctc-c-c-tggaccgcgcccttca-cc----cg-gtggtcctatccgt-aaggcgaga
B D                   Ferret   gggtgca-gcgactcac-t-tgtaccggtgtcttca-cc----cc-ttttcctcatctgt-aaggtgagg
B D                     Panda  gggtgca-gcgactcgc-c-tgtacaggtctcttca-cc----cc--tttccttatctgt-aaggtgcgg
               Pacific walrus  gggtaca-gcgactcac-c-tgtacaggtgacttca-cc----cc-gtttccttatctgt-aaggtgagg
                 Weddell seal  gggttca-gcgactcac-c-tgtataggtgtcttca-cc----cc-gtttccttatctgt-aaggtgagg
             Black flying-fox  gagaaca-gcgactcac-c-tgtacaggtcacatct-ca----cttgtttccttatccgt-gaaatgagg
B D                   Megabat  gagaaca-gcgactcac-c-tgtacaggtcgcatct-ca----cttgtttccttatccgt-gaaatgagg
                Big brown bat  gggaaca-ccgacttcc-c-tgtgcaggccacacct-cc----ct-gtt--ctcacctga-aagg-gagg
         David's myotis (bat)  gggaata-ccgactt-c-c-tgtgcaggtcacacct-cc----cg-gat--ctcacctga-aaagtgcgg
B D                  Microbat  gggaata-ccgactt-c-c-tgtgcaggtcacacct-ct----cgtgat--ctttcctga-aaagtgcgg
B D                  Hedgehog  ggggaca-gctagtcac-c-tgtgcatgtcgcaccc-ct----tt----tccttatctgt-gaaatggga
B D                     Shrew  gggaaca-tcgcgtcac-c-cacttccttctc-----------------------------gaaatgaaa
              Star-nosed mole  ggggaca-gcgagatac-c-cgtgcacgtc----------------------------------------
B D                  Elephant  gcgacca-gcgactccc-a-tgaccaagtcacctca-cc----tctgcttccttttctgt-aaaatgagg
B D                   Manatee  ggaacca-gcgactccc-c-tgagcaagtcacttca-cc----tctgtttccttgtctgt-aaaatga-a
                     Aardvark  gggacca-gcgactgcc-agccagcaagtaacttca-cc----gctgtttccttatcggt-agaatgaag
B D                 Armadillo  agggaca-gccactcac-t-tgtgcaaatcgcttca-tc----ccctcgtctttatctgt-aaagtaagg
B D                    Tenrec  ======================================================================
         Cape elephant shrew  ======================================================================
B D           Squirrel monkey  ======================================================================
B D                  Marmoset  ----------------------------------------------------------------------
B D                     Horse  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
B D                 Tetraodon  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Zebrafish  ======================================================================
B D                    Medaka  ======================================================================
B D             X. tropicalis  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D               Stickleback  ======================================================================
B D       Medium ground finch  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
          Southern platyfish  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
  D              Mallard duck  ======================================================================
            Cape golden mole  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                    Lizard  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D               Zebra finch  ======================================================================
  D       Collared flycatcher  ======================================================================

                        Human  gcgatgggctg-tgtaatctct-------a-aaggaccttctaa--ctctt---taaa---at-------
                        Chimp  gcgatgggctg-tgtaatctct-------a-aaggaccttctaa--ctctt---taaa---at-------
                      Gorilla  gcgatgggctg-tgtaatctct-------a-aaggaccttctaa--ctctt---taaa---at-------
                    Orangutan  gcgatgggctg-tgtaatctct-------a-aaggaccttctaa--ctctt---taaa---at-------
                       Gibbon  gcgatgggctg-tgtaatctct-------a-aaggaccttctaa--ctctt---caaa---attatgtga
                       Rhesus  gcagtgggctg-cgtaatgtct-------a-aaggaccttctaa--ctcct---taaa---at-------
          Crab-eating macaque  gcagtgggctg-cgtaatgtct-------a-aaggaccttctaa--ctcct---taaa---at-------
                       Baboon  gcagtgggctg-cgtaatgtct-------a-aaggaccttctaa--ctcct---taaa---at-------
                 Green monkey  gcagtgggctg-cgtaatcgct-------a-aaggaccttctaa--ctcct---taaa---at-------
                     Bushbaby  acggtgggc-g-tgtgattttc-------c-g--------------------------------------
           Chinese tree shrew  gcgat-ggcca-cataatc-ct-------a-aaggatcttcaga--ttctg---tcaa---at-------
                     Squirrel  gcgatgggcta-tataatctct-------a-aaggaccttctaa--ct--g---taaa---at-------
       Lesser Egyptian jerboa  -----gggcaa-tg--------------------ggctatgtaa--tt----------------------
                 Prairie vole  -----aagcaa-tataatcaat-------t-aaggctcttataa--ctctg---ttaa---aa-------
              Chinese hamster  -----gagcta-tgtaatcacc-------t-aaggaccttatga--ctcgg---taaa---aa-------
               Golden hamster  -----gagcta-tgtaatcacc-------t-aaggaccttgtaa--ctc-g---taaa---aa-------
                        Mouse  -----gagcta-tgcagtcact-------taaaagaccttataa--ct--g---taaa---ac-------
                          Rat  -----gagcta-tgttgtcact-------taaaaggccttataa--ct--c---tgaa---gc-------
               Naked mole-rat  gtggtgggctc-tgttttctct-------g-aaggacttcgtaa--ct--g---taag---at-------
                   Guinea pig  gtggtgggcag-tgtcatctct-------g-aaggaccttatag--ct--gttaacag---at-------
                   Chinchilla  gcggggggc-c-tgttctctcc-------g-aagggccttatag--ct--c---taag---gt-------
             Brush-tailed rat  gtggtgggcgg-ggtgatctcc-------a-aagcacctcttag--ct--c-cgcaag---gt-------
                       Rabbit  gtgatgagcta-cgtaggctct-------a-aggcactttctta------c---taaa---aa-------
                         Pika  gcggggcaccagtgtaagctct-------a-aaggactttctc-------c---tgaa---ct-------
                          Pig  gaagtggacta-tgtgatcttt-------g-aaagacctt-------t--g---taaa---ac-------
                       Alpaca  aacgtggacca-tgtaatctat-------t-aaagacctg-------t--g---taaa---at-------
               Bactrian camel  aacgtggacca-tgtaatctgt-------t-aaagacctg-------t--g---taaa---at-------
                      Dolphin  gaagtggacca-tgtaatgtat-------g-aaaaacctg-------t--g---ttaa---at-------
                 Killer whale  gaagtggacca-tgtaatgtat-------g-aaaaacctg-------t--g---ttaa---ct-------
             Tibetan antelope  gaagcaggctg-tgtagtctct-------g-aaagacctg-------t--g---tcag---at-------
                          Cow  gaagcgggctg-tgtaatctct-------g-aaaggcctg-------t--g---ttag---at-------
                        Sheep  gaagcaggctc-tgtagtctct-------g-aaagacctg-------t--g---tcag---at-------
                Domestic goat  gaagcaggctg-tgtagtctct-------g-aaagacctg-------t--g---tcag---at-------
             White rhinoceros  gagctgggctg-tgtagtctct----ga---gactttccaactg---t--g---tgaa---at-------
                          Cat  gaggtgggcta-tggaatccct----aagc-gact--------------------gaa---gt-------
                          Dog  gacgtgggcta-cgtaatccct----agac-gacctcctgac-----c--c---taaa---gc-------
                      Ferret   gaggtgggctg-tgtcatcccc----aagt-gaccatctgat-------------caa---gt-------
                        Panda  gaagtgggctg-tgtaatccct----aaac-caccatctgac-----c--g---taaa---gt-------
               Pacific walrus  gaggtgggctg-tgtaatccct----aa---------------------------aaa---gt-------
                 Weddell seal  gaggtgggctg-tgtaatccct----aa---------------------------aaa---gt-------
             Black flying-fox  gagatgggcta-tgtaatttct-aaaaaaa-aaaaacctaattc---c--g---tgaa---at-------
                      Megabat  gagatgggcta-tgtaatttctaaaaaaaa-aaaaacctaactc---c--g---tgaa---at-------
                Big brown bat  gaggcgggctg-ttgaagctct-------c-caacaccttattc--ct--c---taac---at-------
         David's myotis (bat)  gaggtgggctg-tttaatctct-------c-aaatgcatcattc--at--c---taaa---ac-------
                     Microbat  gaggtgggctg---gaatctct-------c-aaatgcctcattc--at--c---taaa---ac-------
                     Hedgehog  taagccagcta-tgtaattgat--aaaaaa-aaaaacctga------c--a---tact---ta-------
                        Shrew  g--gctggctg-tatgctcgct-------------cactaa------t--a---aaag------------
              Star-nosed mole  -------gctt-tacccctatg-------------tcctga------c--c---tacgatctc-------
                     Elephant  gaggtgagctc-agtaatctcg-------a-agggaccttttaa--ct--a---taaagttgt-------
                      Manatee  gaggtgagctc-agtaatctct-------a-aaggcccttctag--ct--g---taaaattat-------
                     Aardvark  gaggtgagctc-tgtaatctct-------a-aggcatgttctac--cg--g---taaa---at-------
                    Armadillo  aaggtgggcta-cata-------------a-aaagaccccctaatttt--g---tgaa---at-------
                       Tenrec  ======================================================================
          Cape elephant shrew  ======================================================================
              Squirrel monkey  ======================================================================
                     Marmoset  ----------------------------------------------------------------------
                        Horse  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
                    Tetraodon  ======================================================================
          Princess of Burundi  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Zebrafish  ======================================================================
                       Medaka  ======================================================================
                X. tropicalis  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                Scarlet macaw  ======================================================================
                   Budgerigar  ======================================================================
           Tibetan ground jay  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                  Stickleback  ======================================================================
          Medium ground finch  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
           Southern platyfish  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
                 Mallard duck  ======================================================================
             Cape golden mole  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
              Tasmanian devil  ======================================================================
                       Lizard  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                  Zebra finch  ======================================================================
          Collared flycatcher  ======================================================================

                        Human  -----t-g---------
                        Chimp  -----t-a---------
                      Gorilla  -----t-a---------
                    Orangutan  -----t-a---------
                       Gibbon  ttcact-a---------
                       Rhesus  -----t-a---------
          Crab-eating macaque  -----t-a---------
                       Baboon  -----t-a---------
                 Green monkey  -----t-a---------
                     Bushbaby  -----------------
           Chinese tree shrew  -----t-a---------
                     Squirrel  -----t-a---------
       Lesser Egyptian jerboa  -----------------
                 Prairie vole  -----t-g---------
              Chinese hamster  -----t-g---------
               Golden hamster  -----t-g---------
                        Mouse  -----t-t---------
                          Rat  -----t-c---------
               Naked mole-rat  -----t-a---------
                   Guinea pig  -----t-a---------
                   Chinchilla  -----t-a---------
             Brush-tailed rat  -----g-a---------
                       Rabbit  -----t-g---------
                         Pika  -----t-t---------
                          Pig  -----t-a---------
                       Alpaca  -----t-a---------
               Bactrian camel  -----t-a---------
                      Dolphin  -----t-a---------
                 Killer whale  -----t-a---------
             Tibetan antelope  -----t-a---------
                          Cow  -----------------
                        Sheep  -----t-a---------
                Domestic goat  -----t-t---------
             White rhinoceros  -----t-a---------
                          Cat  -----t-t---------
                          Dog  -----t-g---------
                      Ferret   -----t-----------
                        Panda  -----taa---------
               Pacific walrus  -----t-a---------
                 Weddell seal  -----t-c---------
             Black flying-fox  -----t-a---------
                      Megabat  -----t-a---------
                Big brown bat  -----t-a---------
         David's myotis (bat)  -----------------
                     Microbat  -----------------
                     Hedgehog  -----t-a---------
                        Shrew  -----t-a---------
              Star-nosed mole  -----c-a---------
                     Elephant  -----g-tgattctcta
                      Manatee  -----g-tgattctcta
                     Aardvark  -----g-taatt---ta
                    Armadillo  -----t-tgagcctata
                       Tenrec  =================
          Cape elephant shrew  =================
              Squirrel monkey  =================
                     Marmoset  -----------------
                        Horse  =================
          Pundamilia nyererei  =================
                  Zebra mbuna  =================
        Burton's mouthbreeder  =================
                    Tetraodon  =================
          Princess of Burundi  =================
       Yellowbelly pufferfish  =================
                    Zebrafish  =================
                       Medaka  =================
                X. tropicalis  =================
                       Turkey  =================
                      Chicken  =================
                Scarlet macaw  =================
                   Budgerigar  =================
           Tibetan ground jay  =================
             Peregrine falcon  =================
                 Saker falcon  =================
                  Rock pigeon  =================
                  Stickleback  =================
          Medium ground finch  =================
                   Coelacanth  =================
                  Spotted gar  =================
           Southern platyfish  =================
                 Nile tilapia  =================
                         Fugu  =================
                 Mallard duck  =================
             Cape golden mole  =================
     Chinese softshell turtle  =================
               Painted turtle  =================
              Green seaturtle  =================
              Tasmanian devil  =================
                       Lizard  =================
                     Platypus  =================
           American alligator  =================
                  Zebra finch  =================
          Collared flycatcher  =================

Inserts between block 8 and 9 in window
B D                   Rhesus 12bp
B D      Crab-eating macaque 12bp
B D                   Baboon 12bp
B D             Green monkey 34bp
          Chinese tree shrew 10bp
B D                 Squirrel 12bp
      Lesser Egyptian jerboa 6bp
                Prairie vole 12bp
B D          Chinese hamster 12bp
              Golden hamster 12bp
B D                    Mouse 12bp
B D                      Rat 10bp
B D           Naked mole-rat 8bp
B D               Guinea pig 11bp
                  Chinchilla 11bp
            Brush-tailed rat 9bp
B D                   Rabbit 12bp
B D                     Pika 14bp
B D                      Pig 12bp
B D                   Alpaca 12bp
              Bactrian camel 12bp
B D                  Dolphin 12bp
                Killer whale 12bp
            Tibetan antelope 12bp
B D                      Cow 2bp
B D                    Sheep 12bp
               Domestic goat 12bp
B D         White rhinoceros 10bp
B D                      Cat 12bp
B D                      Dog 12bp
B D                  Ferret  2bp
B D                    Panda 12bp
              Pacific walrus 12bp
                Weddell seal 12bp
            Black flying-fox 8bp
B D                  Megabat 8bp
               Big brown bat 8bp
        David's myotis (bat) 8bp
B D                 Microbat 8bp
B D                 Hedgehog 13bp
B D                    Shrew 12bp
             Star-nosed mole 17bp

Alignment block 9 of 161 in window, 50313145 - 50313164, 20 bps 
B D                     Human  tc--actgtg-------cc----g------gtg----ttgcta------
B D                     Chimp  tc--accgtg-------cc----a------gtg----ttgcta------
B D                   Gorilla  tc--actgtg-------cc----a------gtg----ttgcta------
B D                 Orangutan  tt--accgtg-------cc----a------gtg----ttgcta------
B D                    Gibbon  tc--accgtg-------cc----a------gtg----ttacta------
B D                    Rhesus  tc--accgtg-------ct----aacacgggtg----ttacta------
B D       Crab-eating macaque  tc--accgtg-------ct----aacacgggtg----tt----------
B D                    Baboon  tc--accgtg-------ct----aacacgggtg----ttacta------
B D                  Bushbaby  tc--accttt-------cc----g------gtc----caacac------
           Chinese tree shrew  tc--atcgtg-------cc----a------att----ta----------
B D                  Squirrel  tcctaccatc-------cc----a------gta----ta----------
       Lesser Egyptian jerboa  tg--attctg-------tc----t------gt-----------------
                 Prairie vole  tc--accatg-------cc----g------atg----ta----------
B D           Chinese hamster  tc--accatg-------cc----a------gtg----ta----------
               Golden hamster  ac--accatg-------cc----c------gc-----ta----------
B D                     Mouse  tc--accata-------cc----a------atg----ta----------
B D                       Rat  tc--accata-------cc----a------gtg----------------
B D            Naked mole-rat  tc--accggg-------cc----a------acg----ta----------
B D                Guinea pig  tc--gcgatg-------cc----a------acc----ta----------
                   Chinchilla  tc--atcgtg-------cc----g------tcg----ta----------
             Brush-tailed rat  tc--accgtg-------cc----a------gcg----ta----------
B D                    Rabbit  tc--tccgtg-------ct----a------gtt----ta----------
B D                      Pika  tc--agtgcg-------cc----g------gtt----ga----------
B D                       Pig  tc--gctatg-------cc----t------gtt----ta----------
B D                    Alpaca  tc--accatg-------ccagttt------aac----ta----------
               Bactrian camel  tc--accatg-------ccagttt------aac----ta----------
B D                   Dolphin  tc--accatg-------cc----t------aac----ta----------
                 Killer whale  tc--accatg-------cc----t------aac----ca----------
             Tibetan antelope  gt--tctgtg-------cc----t------aac----ta----------
B D                       Cow  gt--tctgtg-------c--------------c----ta----------
B D                     Sheep  gc--tctgtg-------c--------------c----ta----------
                Domestic goat  gt--tctgtg-------cc----t------aac----ta----------
B D          White rhinoceros  tc--accgcg-------cc----a------gttgaacca----------
B D                       Cat  tc--accgtg-------gc----c------gtt----ta----------
B D                       Dog  tc--accgtg-------gc----a------gtt----ga----------
B D                   Ferret   tt--cccgtg-------gc----a------gtt----cc----------
B D                     Panda  tt--accttg-------gc----a------gtt----ca----------
               Pacific walrus  tta-accgtg-------gc----a------gtc----ca----------
                 Weddell seal  tt--accgcg-------gc----a------gtt----ca----------
             Black flying-fox  tc--actgtg-------cc----a------gtt----ta----------
B D                   Megabat  tc--actgtg-------cc----a------gtt----ta----------
                Big brown bat  tc--accgtg-------cc----a------gtt----ta----------
         David's myotis (bat)  tc--acc-tg-------cc----a------gct----ta----------
B D                  Microbat  tc--acc-tg-------cc----a------gct----ta----------
B D                  Hedgehog  cc--accgtg-------cc----a------gtt----ta----------
B D                     Shrew  tt--accctgtgctgggtt----a------gct----tc----------
              Star-nosed mole  aa--agcatgtgt----tt----a------ccg----cc----------
B D                  Elephant  tc--cccgtg-------cc----a------gtt----ta----attcta
B D                   Manatee  tc--cccctg-------cc----a------gtt----ta----attctt
                     Aardvark  tc--acagtg-------ac----a------gtt----ta----atttta
B D                 Armadillo  cc--actatg-------ct----a------gtt-----------gttta
B D                    Tenrec  =================================================
         Cape elephant shrew  =================================================
B D           Squirrel monkey  =================================================
B D              Green monkey  =================================================
B D                  Marmoset  -------------------------------------------------
B D                     Horse  =================================================
         Pundamilia nyererei  =================================================
                 Zebra mbuna  =================================================
       Burton's mouthbreeder  =================================================
B D                 Tetraodon  =================================================
         Princess of Burundi  =================================================
      Yellowbelly pufferfish  =================================================
B D                 Zebrafish  =================================================
B D                    Medaka  =================================================
B D             X. tropicalis  =================================================
B D                    Turkey  =================================================
B D                   Chicken  =================================================
  D             Scarlet macaw  =================================================
B D                Budgerigar  =================================================
          Tibetan ground jay  =================================================
  D          Peregrine falcon  =================================================
  D              Saker falcon  =================================================
  D               Rock pigeon  =================================================
B D               Stickleback  =================================================
B D       Medium ground finch  =================================================
B D                Coelacanth  =================================================
                 Spotted gar  =================================================
          Southern platyfish  =================================================
B D              Nile tilapia  =================================================
B D                      Fugu  =================================================
  D              Mallard duck  =================================================
            Cape golden mole  =================================================
  D  Chinese softshell turtle  =================================================
  D            Painted turtle  =================================================
  D           Green seaturtle  =================================================
B D           Tasmanian devil  =================================================
B D                    Lizard  =================================================
B D                  Platypus  =================================================
B D        American alligator  =================================================
B D               Zebra finch  =================================================
  D       Collared flycatcher  =================================================

Alignment block 10 of 161 in window, 50313165 - 50313187, 23 bps 
B D                     Human  ----acact-c-att-ctgtatgcttgatg
B D                     Chimp  ----acact-c-att-ctgtatgcttgatg
B D                   Gorilla  ----acact-c-att-ctgtatgcttgatg
B D                 Orangutan  ----acact-c-att-ctgtatgcttgatg
B D                    Gibbon  ----acact-c-att-cagtatgcgtgttg
B D                    Rhesus  ----acgcc-c-att-ctatatgcttgatg
B D       Crab-eating macaque  ----acgcc-c-att-ctgtatgcttgatg
B D                    Baboon  ----acgcc-c-att-ctgtatgcttgatg
B D              Green monkey  ----acgcc-c-att-ctgtatgcttgatg
B D                  Bushbaby  ----acacc-c-gtg-cgctgagcttgatg
           Chinese tree shrew  ----acacc-t-gtt-gtctgtgcttgatg
B D                  Squirrel  ----atact-t-aattatctctgctttgtg
       Lesser Egyptian jerboa  ----------------ctccgtgcttga-g
                 Prairie vole  ----attcc-c-g---ttctctgcttgatg
B D           Chinese hamster  ----attcc-c-a---ttctctgcttggtg
               Golden hamster  ----attcc-t-a---ttctctgcttgatg
B D                     Mouse  ----attcc-c-a---ttcggtgcttgatg
B D                       Rat  ----------c-a---ttctgtgcttgatg
B D            Naked mole-rat  ----gtacc-c-gat-ctgtttgcttcgtg
B D                Guinea pig  ----atacc-g-gaa-ccatttgcttggtg
                   Chinchilla  ----atacc-c-ag---tgtttgcttggtg
             Brush-tailed rat  ----atacc-c-cgg-ctatttgcttggtg
B D                    Rabbit  ----acacc-c-gtt-ttcggtgctcgctg
B D                      Pika  ----ac-tc-c-gtt-ttttctgtgctttg
B D                       Pig  ----tcgctat-gct-ccctatgcttgatg
B D                    Alpaca  ----acacc-t-gtt-ctcggggcttgatg
               Bactrian camel  ----acacc-t-gtt-ctcggggcttgatg
B D                   Dolphin  ----acatt-t-atc-acca-tgtttaact
                 Killer whale  ----acatt-t-atc-acca-tgtttaact
             Tibetan antelope  ----acacc-t-gtt-gtcagtgtttgatg
B D                       Cow  ----acacc-t-gtt-gtcagtgtttgatg
B D                     Sheep  ----acacc-t-gtt-gtcagcgtttgatg
                Domestic goat  ----acacc-t-gtt-gtcagtgtttgatg
B D          White rhinoceros  ----acacc---gtt-ctctgtac-tgatg
B D                       Cat  ----acgcc-t-gtg-ctcagtgcttatcg
B D                       Dog  ----acacc-t-gta-ctctgtgcttagtg
B D                   Ferret   ----acacc-t-gtc-ctccgtgcttgatg
B D                     Panda  ----acacc-c-gta-ctctgtgcttggtg
               Pacific walrus  ----acacc-t-gta-ctctgtgcctgatg
                 Weddell seal  ----acacc-t-gta-ctctgtgcctgatg
             Black flying-fox  ----acacc-c-att-ctctgcgcttgatg
B D                   Megabat  ----acacc-c-att-ctctgcgcttgatg
                Big brown bat  ----aca----------------tttc---
         David's myotis (bat)  ----acacc-----------gtgcttcatg
B D                  Microbat  ----acacc-----------gtgcttcatg
B D                  Hedgehog  ----acacc-c-gtt-ctttgtgcttgatc
B D                     Shrew  ----acacc-ctgtt-ctctgtgcttggcc
              Star-nosed mole  ----gcacc-c-----------gtttgacc
B D                  Elephant  acccttacc-c-gct-gtctgcgctcgaag
B D                   Manatee  aaccttacc-c-gtt-ctctgtgcttgaag
                     Aardvark  accgttaat-t-act-gtccgtgcttgaag
B D                 Armadillo  accattacc-t-gtt-ctttgtgcttgtgg
B D                    Tenrec  ==============================
         Cape elephant shrew  ==============================
B D           Squirrel monkey  ==============================
B D                  Marmoset  ------------------------------
B D                     Horse  ==============================
         Pundamilia nyererei  ==============================
                 Zebra mbuna  ==============================
       Burton's mouthbreeder  ==============================
B D                 Tetraodon  ==============================
         Princess of Burundi  ==============================
      Yellowbelly pufferfish  ==============================
B D                 Zebrafish  ==============================
B D                    Medaka  ==============================
B D             X. tropicalis  ==============================
B D                    Turkey  ==============================
B D                   Chicken  ==============================
  D             Scarlet macaw  ==============================
B D                Budgerigar  ==============================
          Tibetan ground jay  ==============================
  D          Peregrine falcon  ==============================
  D              Saker falcon  ==============================
  D               Rock pigeon  ==============================
B D               Stickleback  ==============================
B D       Medium ground finch  ==============================
B D                Coelacanth  ==============================
                 Spotted gar  ==============================
          Southern platyfish  ==============================
B D              Nile tilapia  ==============================
B D                      Fugu  ==============================
  D              Mallard duck  ==============================
            Cape golden mole  ==============================
  D  Chinese softshell turtle  ==============================
  D            Painted turtle  ==============================
  D           Green seaturtle  ==============================
B D           Tasmanian devil  ==============================
B D                    Lizard  ==============================
B D                  Platypus  ==============================
B D        American alligator  ==============================
B D               Zebra finch  ==============================
  D       Collared flycatcher  ==============================

Inserts between block 10 and 11 in window
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 25bp
                Killer whale 25bp
            Tibetan antelope 17bp
B D                      Cow 17bp
B D                    Sheep 23bp
               Domestic goat 19bp

Alignment block 11 of 161 in window, 50313188 - 50313213, 26 bps 
B D                     Human  gcagttt-tt-aatttttagggt--tagga
B D                     Chimp  gcagttt-tt-aatttttagggt--tagga
B D                   Gorilla  gcagttt-tt-aatttttagggt--tagga
B D                 Orangutan  gcagttt-tt-aatttttagggt--taaga
B D                    Gibbon  gcagttt-tt-aatttttagggt--tagga
B D                    Rhesus  gcagttt-tt-aatttttagggt--tagca
B D       Crab-eating macaque  gcagttt-tt-aatttttagggt--tagca
B D                    Baboon  gcagttt-tt-aatttttagggt--tagca
B D              Green monkey  acaattt-tt-aatttttagggt--tagca
B D                  Bushbaby  acagttt-ta-aatgttcagggt--tagga
           Chinese tree shrew  gcatgtt-tt-aaattttaagat--cagac
B D                  Squirrel  atagttt-ttaaatttttaggat--cagga
       Lesser Egyptian jerboa  gcagttt-tt-aatttttaaggc--tggat
                 Prairie vole  gtggttc-tt-tgttcttcggct--tagaa
B D           Chinese hamster  gtagttc-tt------ttagggt--tagaa
               Golden hamster  ctagttc-tt------ttagagt--tagaa
B D                     Mouse  gtagtcc-tt-catctttagggt--tagac
B D                       Rat  gtagttc-tt-catctttag----------
B D            Naked mole-rat  tcggttt-tt-gatatttagggc--caaga
B D                Guinea pig  gcggttt-tt-aatatttaggat--caaca
                   Chinchilla  gcggttt-tt-aatacttaaggt--caaga
             Brush-tailed rat  gcagttt-tt-gatacttaggga--caaat
B D                    Rabbit  gcagttt-gg-aatccatagagt--ccacg
B D                      Pika  atggcct-----------------------
B D                       Pig  --agttt-tt-aatctttagggt--cagga
B D                    Alpaca  --agttt-tt-aatttttagggt--aagga
               Bactrian camel  --agttt-tt-aatttttagggt--aagga
B D                   Dolphin  aagtttt-tt-aatttttagggt--cagga
                 Killer whale  aagtttt-tt-aatttttagggt--cagga
             Tibetan antelope  --ttttt-t----tttttagggt--cagga
B D                       Cow  --ttttt-tt-aatttttagggt--cagga
B D                     Sheep  --gtttt-tt-aatttttagggt--cagga
                Domestic goat  --gttttgtt-aatttttagggt--cagga
B D                     Horse  gccgttt-tt-aacttttagggt--cgaga
B D          White rhinoceros  gcag--t-tt-aacttttagggt--cagga
B D                       Cat  gcagttt-tt-catttttagggt--cggaa
B D                       Dog  gcagttt-tt-gatttttaggat--cagaa
B D                   Ferret   gcagtct-tt-aatctttagggt--cagca
B D                     Panda  gcaatgt-tt-aatttttagggt--cagga
               Pacific walrus  gcagttc-tt-aatttttagggt--cagaa
                 Weddell seal  gcaactc-tt-aatttttagggt--cagaa
             Black flying-fox  gcagttt-tt-aatttttagagt--gagaa
B D                   Megabat  gcagttt-tt-aatttttagagt--gagaa
                Big brown bat  -----ta-aa-aat------ggg--cagga
         David's myotis (bat)  gcagatg-aa-catgtgtcgggt--cagaa
B D                  Microbat  gcagttg-aa-catgtgtcgggt--cagaa
B D                  Hedgehog  ctag-----t-tgttcttagggt--cggga
B D                     Shrew  gcagt----t-cttgtttgggggatcagga
              Star-nosed mole  atagttt-at-catttttaaggg--cagga
B D                  Elephant  gcagtct-tt-aatttctagagc-------
B D                   Manatee  gcagttt-tt-aatttttagagc---agag
                     Aardvark  gcaattt-tt-actgtttagagc-------
B D                 Armadillo  gcagttt-tt-actttttagggt--cagga
B D                    Tenrec  ==============================
         Cape elephant shrew  ==============================
B D           Squirrel monkey  ==============================
B D                  Marmoset  ------------------------------
         Pundamilia nyererei  ==============================
                 Zebra mbuna  ==============================
       Burton's mouthbreeder  ==============================
B D                 Tetraodon  ==============================
         Princess of Burundi  ==============================
      Yellowbelly pufferfish  ==============================
B D                 Zebrafish  ==============================
B D                    Medaka  ==============================
B D             X. tropicalis  ==============================
B D                    Turkey  ==============================
B D                   Chicken  ==============================
  D             Scarlet macaw  ==============================
B D                Budgerigar  ==============================
          Tibetan ground jay  ==============================
  D          Peregrine falcon  ==============================
  D              Saker falcon  ==============================
  D               Rock pigeon  ==============================
B D               Stickleback  ==============================
B D       Medium ground finch  ==============================
B D                Coelacanth  ==============================
                 Spotted gar  ==============================
          Southern platyfish  ==============================
B D              Nile tilapia  ==============================
B D                      Fugu  ==============================
  D              Mallard duck  ==============================
            Cape golden mole  ==============================
  D  Chinese softshell turtle  ==============================
  D            Painted turtle  ==============================
  D           Green seaturtle  ==============================
B D           Tasmanian devil  ==============================
B D                    Lizard  ==============================
B D                  Platypus  ==============================
B D        American alligator  ==============================
B D               Zebra finch  ==============================
  D       Collared flycatcher  ==============================

Inserts between block 11 and 12 in window
B D                 Hedgehog 7440bp

Alignment block 12 of 161 in window, 50313214 - 50313216, 3 bps 
B D                     Human  cag
B D                     Chimp  cag
B D                   Gorilla  cag
B D                 Orangutan  cag
B D                    Gibbon  cag
B D                    Rhesus  cag
B D       Crab-eating macaque  cag
B D                    Baboon  cag
B D              Green monkey  tag
B D                  Bushbaby  cag
           Chinese tree shrew  ca-
B D                  Squirrel  gaa
       Lesser Egyptian jerboa  aag
                 Prairie vole  tgg
B D           Chinese hamster  cag
               Golden hamster  cag
B D                     Mouse  cag
B D            Naked mole-rat  cag
B D                Guinea pig  cag
                   Chinchilla  cag
             Brush-tailed rat  cag
B D                    Rabbit  cag
B D                       Pig  cag
B D                    Alpaca  cag
               Bactrian camel  cag
B D                   Dolphin  cag
                 Killer whale  cag
             Tibetan antelope  cag
B D                       Cow  cag
B D                     Sheep  cag
                Domestic goat  cag
B D                     Horse  cag
B D          White rhinoceros  cag
B D                       Cat  cag
B D                       Dog  cag
B D                   Ferret   caa
B D                     Panda  cag
               Pacific walrus  cag
                 Weddell seal  cag
             Black flying-fox  cag
B D                   Megabat  cag
                Big brown bat  cag
         David's myotis (bat)  cag
B D                  Microbat  cag
B D                   Manatee  cag
B D                 Armadillo  gag
B D                       Rat  ---
B D                    Tenrec  ===
         Cape elephant shrew  ===
B D                  Hedgehog  ===
B D                     Shrew  ---
             Star-nosed mole  ---
B D                      Pika  ---
B D           Squirrel monkey  ===
B D                  Marmoset  ---
B D                  Elephant  ---
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
B D                 Tetraodon  ===
         Princess of Burundi  ===
      Yellowbelly pufferfish  ===
B D                 Zebrafish  ===
B D                    Medaka  ===
B D             X. tropicalis  ===
B D                    Turkey  ===
B D                   Chicken  ===
  D             Scarlet macaw  ===
B D                Budgerigar  ===
          Tibetan ground jay  ===
  D          Peregrine falcon  ===
  D              Saker falcon  ===
  D               Rock pigeon  ===
B D               Stickleback  ===
B D       Medium ground finch  ===
B D                Coelacanth  ===
                 Spotted gar  ===
          Southern platyfish  ===
B D              Nile tilapia  ===
B D                      Fugu  ===
  D              Mallard duck  ===
                    Aardvark  ---
            Cape golden mole  ===
  D  Chinese softshell turtle  ===
  D            Painted turtle  ===
  D           Green seaturtle  ===
B D           Tasmanian devil  ===
B D                    Lizard  ===
B D                  Platypus  ===
B D        American alligator  ===
B D               Zebra finch  ===
  D       Collared flycatcher  ===

Alignment block 13 of 161 in window, 50313217 - 50313225, 9 bps 
B D                     Human  ctgaacata
B D                     Chimp  ctgaacata
B D                   Gorilla  ctgaacata
B D                 Orangutan  ctgaacata
B D                    Gibbon  tcgaacata
B D                    Rhesus  ctgaacata
B D       Crab-eating macaque  ctgaacata
B D                    Baboon  ctgaacata
B D              Green monkey  ctgaacata
B D                  Marmoset  ctgaacaga
B D                  Bushbaby  ctgaacaga
           Chinese tree shrew  --gaacaa-
B D                  Squirrel  ctga-----
       Lesser Egyptian jerboa  cggaatgga
                 Prairie vole  cttaacagg
B D           Chinese hamster  cttaacagg
               Golden hamster  cataacagg
B D                     Mouse  cttaacagg
B D                       Rat  -------gg
B D            Naked mole-rat  ctgaacaga
B D                Guinea pig  ctgaag--a
                   Chinchilla  ctaaacaga
             Brush-tailed rat  ctggac--a
B D                    Rabbit  ctgcacaga
B D                       Pig  ctgaaggga
B D                    Alpaca  ctgaacgga
               Bactrian camel  ctgaacaga
B D                   Dolphin  ctg-----a
                 Killer whale  ctg-----a
             Tibetan antelope  ctgagcaaa
B D                       Cow  ctgagcaaa
B D                     Sheep  ctgagcaaa
                Domestic goat  ctgagcaaa
B D                     Horse  ctgatcaga
B D          White rhinoceros  ctgaacaga
B D                       Cat  ctgaacaga
B D                       Dog  ctgaacaca
B D                   Ferret   ctgaacaga
B D                     Panda  ctgaacaga
               Pacific walrus  ctgaacag-
                 Weddell seal  ctgaacaga
             Black flying-fox  ctgaacaga
B D                   Megabat  ctgaacaga
                Big brown bat  ctgaacaga
         David's myotis (bat)  cgggacaga
B D                  Microbat  cggaacaga
B D                     Shrew  -------ga
              Star-nosed mole  -------aa
B D                   Manatee  tggaacaaa
                     Aardvark  ------agg
B D                 Armadillo  ctgaacaca
B D                    Tenrec  =========
         Cape elephant shrew  =========
B D                  Hedgehog  =========
B D                      Pika  ---------
B D           Squirrel monkey  =========
B D                  Elephant  ---------
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
B D                 Tetraodon  =========
         Princess of Burundi  =========
      Yellowbelly pufferfish  =========
B D                 Zebrafish  =========
B D                    Medaka  =========
B D             X. tropicalis  =========
B D                    Turkey  =========
B D                   Chicken  =========
  D             Scarlet macaw  =========
B D                Budgerigar  =========
          Tibetan ground jay  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
  D               Rock pigeon  =========
B D               Stickleback  =========
B D       Medium ground finch  =========
B D                Coelacanth  =========
                 Spotted gar  =========
          Southern platyfish  =========
B D              Nile tilapia  =========
B D                      Fugu  =========
  D              Mallard duck  =========
            Cape golden mole  =========
  D  Chinese softshell turtle  =========
  D            Painted turtle  =========
  D           Green seaturtle  =========
B D           Tasmanian devil  =========
B D                    Lizard  =========
B D                  Platypus  =========
B D        American alligator  =========
B D               Zebra finch  =========
  D       Collared flycatcher  =========

Inserts between block 13 and 14 in window
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 2bp
B D                      Cow 2bp
B D                    Sheep 2bp
               Domestic goat 2bp
B D                    Horse 2bp
B D         White rhinoceros 2bp
B D                      Cat 2bp
B D                      Dog 219bp
B D                  Ferret  2bp
B D                    Panda 2bp
                Weddell seal 2bp

Alignment block 14 of 161 in window, 50313226 - 50313242, 17 bps 
B D                     Human  ac----aaatagaattata-ca
B D                     Chimp  ac----aaatagaattata-ca
B D                   Gorilla  ac----aaatagaattata-ca
B D                 Orangutan  ac----aaatagaattata-ca
B D                    Gibbon  ac----gaaaagaagtata-c-
B D                    Rhesus  ac----aaatagaatgaca-ca
B D       Crab-eating macaque  ac----aaatagaatgaca-ca
B D                    Baboon  ac----aaatagaatgaca-ca
B D              Green monkey  ac----aaatagaatgaca-ca
B D                  Marmoset  ac--agaaatagaatgata-ca
B D                  Bushbaby  ac----aaaaacagtgata-ta
           Chinese tree shrew  ------aaatagaatgata-cc
B D                  Squirrel  ----taaaatagaacagta-ta
       Lesser Egyptian jerboa  ac--taaaatagaataaca-ga
                 Prairie vole  ac--cataacagaatgata-ga
B D           Chinese hamster  ac--caaaacagaatgatg-ga
               Golden hamster  ac--caaaacagaatgatg-ga
B D                     Mouse  ac------------------ag
B D                       Rat  ac------------------aa
B D            Naked mole-rat  ac--taaat-------------
B D                Guinea pig  ac--taaattagaatgata-aa
                   Chinchilla  ac--taagctagaacgatc-aa
             Brush-tailed rat  at--taaattagatcgata-aa
B D                    Rabbit  tca-tgaatagggtagcga-tg
B D                      Pika  ----tgaacaagattgagg-tc
B D                       Pig  ----gaaaatagaatgatg-ta
B D                    Alpaca  ----aaaaatagaataatg-tg
               Bactrian camel  ----aaaaatagaataatg-tg
B D                   Dolphin  ----aaaaatagaatcatt-ta
                 Killer whale  ----aaaaatagaatcatt-ta
             Tibetan antelope  ----aaaaatagaacgatg-ta
B D                       Cow  ----aaaaatagaacgatg-ta
B D                     Sheep  ----aaaaatagaacgatg-ta
                Domestic goat  ----aaaaatagaacgatg-ta
B D                     Horse  ----aaagatggagtgatg--c
B D          White rhinoceros  ----aaagatagaatgata-tc
B D                       Cat  ----aaaattagaatgttaaaa
B D                       Dog  ----aaaaatagaatgttaaaa
B D                   Ferret   ----aaaagtagaatgttaaaa
B D                     Panda  ----aaaagtagaatgttaaaa
               Pacific walrus  ----aaaagcagaatgttaaaa
                 Weddell seal  ----aaaagtagaatgttaaaa
             Black flying-fox  -----aaaatagaatg-ta-ca
B D                   Megabat  -----aaaatagaatg-ta-ca
                Big brown bat  -----aaaaaagaatgata-ca
         David's myotis (bat)  -----acaatagaatggta-cc
B D                  Microbat  -----acaatagaatggta-cc
B D                     Shrew  ----cagaaaaaaaaagaa-aa
              Star-nosed mole  -----agaataaaatgaca-aa
B D                  Elephant  -------aatagaatgata-ta
B D                   Manatee  --acaaaaatagaatgata-ga
                     Aardvark  --gcaaaaattgc---ata-ca
B D                 Armadillo  --acaaaaatggaatgata-ta
B D                    Tenrec  ======================
         Cape elephant shrew  ======================
B D                  Hedgehog  ======================
B D           Squirrel monkey  ======================
         Pundamilia nyererei  ======================
                 Zebra mbuna  ======================
       Burton's mouthbreeder  ======================
B D                 Tetraodon  ======================
         Princess of Burundi  ======================
      Yellowbelly pufferfish  ======================
B D                 Zebrafish  ======================
B D                    Medaka  ======================
B D             X. tropicalis  ======================
B D                    Turkey  ======================
B D                   Chicken  ======================
  D             Scarlet macaw  ======================
B D                Budgerigar  ======================
          Tibetan ground jay  ======================
  D          Peregrine falcon  ======================
  D              Saker falcon  ======================
  D               Rock pigeon  ======================
B D               Stickleback  ======================
B D       Medium ground finch  ======================
B D                Coelacanth  ======================
                 Spotted gar  ======================
          Southern platyfish  ======================
B D              Nile tilapia  ======================
B D                      Fugu  ======================
  D              Mallard duck  ======================
            Cape golden mole  ======================
  D  Chinese softshell turtle  ======================
  D            Painted turtle  ======================
  D           Green seaturtle  ======================
B D           Tasmanian devil  ======================
B D                    Lizard  ======================
B D                  Platypus  ======================
B D        American alligator  ======================
B D               Zebra finch  ======================
  D       Collared flycatcher  ======================

Inserts between block 14 and 15 in window
B D                Armadillo 3476bp

Alignment block 15 of 161 in window, 50313243 - 50313244, 2 bps 
B D                     Human  ga
B D                     Chimp  ga
B D                   Gorilla  ga
B D                 Orangutan  ga
B D                    Rhesus  aa
B D       Crab-eating macaque  aa
B D                    Baboon  aa
B D              Green monkey  aa
B D                  Marmoset  aa
B D                  Bushbaby  a-
           Chinese tree shrew  ac
B D                  Squirrel  ac
       Lesser Egyptian jerboa  aa
                 Prairie vole  a-
B D           Chinese hamster  a-
               Golden hamster  a-
B D                     Mouse  a-
B D                       Rat  a-
B D                Guinea pig  ac
                   Chinchilla  ac
             Brush-tailed rat  ac
B D                    Rabbit  g-
B D                      Pika  t-
B D                       Pig  gc
B D                    Alpaca  ac
               Bactrian camel  ac
B D                   Dolphin  ac
                 Killer whale  ac
             Tibetan antelope  ac
B D                       Cow  ac
B D                     Sheep  ac
                Domestic goat  ac
B D                     Horse  gc
B D          White rhinoceros  at
B D                       Cat  ac
B D                       Dog  ac
B D                   Ferret   ac
B D                     Panda  ac
               Pacific walrus  ac
                 Weddell seal  ac
                Big brown bat  gc
         David's myotis (bat)  gc
B D                  Microbat  gc
B D                     Shrew  ga
              Star-nosed mole  gt
B D                  Elephant  ac
B D                   Manatee  ac
                     Aardvark  at
B D                    Tenrec  ==
         Cape elephant shrew  ==
B D                  Hedgehog  ==
B D           Squirrel monkey  ==
B D                 Armadillo  ==
            Black flying-fox  --
B D            Naked mole-rat  --
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
B D                 Tetraodon  ==
         Princess of Burundi  ==
      Yellowbelly pufferfish  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
B D             X. tropicalis  ==
B D                    Turkey  ==
B D                   Chicken  ==
  D             Scarlet macaw  ==
B D                Budgerigar  ==
          Tibetan ground jay  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D               Rock pigeon  ==
B D               Stickleback  ==
B D       Medium ground finch  ==
B D                Coelacanth  ==
                 Spotted gar  ==
          Southern platyfish  ==
B D              Nile tilapia  ==
B D                      Fugu  ==
  D              Mallard duck  ==
            Cape golden mole  ==
B D                   Megabat  --
  D  Chinese softshell turtle  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D           Tasmanian devil  ==
B D                    Lizard  ==
B D                  Platypus  ==
B D        American alligator  ==
B D               Zebra finch  ==
  D       Collared flycatcher  ==
B D                    Gibbon  --

Inserts between block 15 and 16 in window
B D                      Cow 231bp

Alignment block 16 of 161 in window, 50313245 - 50313259, 15 bps 
B D                     Human  tttatt----acc----a----------------------------------------------------
B D                     Chimp  tttatt----acc----a----------------------------------------------------
B D                   Gorilla  tttatt----acc----a----------------------------------------------------
B D                 Orangutan  tttatt----acc----a----------------------------------------------------
B D                    Gibbon  tttatt----acc----a----------------------------------------------------
B D                    Rhesus  tttatt----acc----a----------------------------------------------------
B D       Crab-eating macaque  tttatt----acc----a----------------------------------------------------
B D                    Baboon  tttatt----acc----a----------------------------------------------------
B D              Green monkey  tttatt----acc----a----------------------------------------------------
B D                  Marmoset  tttatt----acc----a----------------------------------------------------
B D                  Bushbaby  -ctatt----tct----g----------------------------------------------------
           Chinese tree shrew  tttctt----act----g----------------------------------------------------
B D                  Squirrel  tttatt----gct----g----------------------------------------------------
       Lesser Egyptian jerboa  tttatt----gct----t----------------------------------------------------
                 Prairie vole  -ctatc----gct----g----------------------------------------------------
B D           Chinese hamster  -ctatt----gct----g----------------------------------------------------
               Golden hamster  -ctatt----gct----g----------------------------------------------------
B D                     Mouse  -ctgtc----gctggaag----------------------------------------------------
B D                       Rat  -ctgtt----gct---------------------------------------------------------
B D                Guinea pig  tgtact----gct----g----------------------------------------------------
                   Chinchilla  tt--tc----gct----g----------------------------------------------------
             Brush-tailed rat  ttcatt----gct----g----------------------------------------------------
B D                    Rabbit  -ctctg----gcc----g----------------------------------------------------
B D                      Pika  -ctttg----ttc---------------------------------------------------------
B D                       Pig  cttatt----gct----g----------------------------------------------------
B D                    Alpaca  ttcact----gct----g----------------------------------------------------
               Bactrian camel  ttcact----gct----g----------------------------------------------------
B D                   Dolphin  tttatt----gct----g----------------------------------------------------
                 Killer whale  tttatt----gct----g----------------------------------------------------
             Tibetan antelope  tttatt----gct----gtatttggatttagcagatggagcagtggtaaagaatatacttccagtgccag
B D                       Cow  tttatt----gct----g----------------------------------------------------
B D                     Sheep  tttatt----act----gtatttggatttagcagatggagcagtggtaaagaatatgcttccagtgccaa
                Domestic goat  tttatt----aca----gtatttggacttagcagatggagcagtggtaaagaatatacttccagtgccaa
B D                     Horse  tgtctt----gct----g----------------------------------------------------
B D          White rhinoceros  tttctt----gct----g----------------------------------------------------
B D                       Cat  tttatt----gct----g----------------------------------------------------
B D                       Dog  tttatt----gct----g----------------------------------------------------
B D                   Ferret   tgtatt----gct----g----------------------------------------------------
B D                     Panda  tttatt----gtt----g----------------------------------------------------
               Pacific walrus  tttatt----gct----g----------------------------------------------------
                 Weddell seal  tttatt----gct----g----------------------------------------------------
             Black flying-fox  cttact----gct----g----------------------------------------------------
B D                   Megabat  cttatt----gct----g----------------------------------------------------
                Big brown bat  ttcatt----gcc----g----------------------------------------------------
         David's myotis (bat)  ctcatg----gcc----g----------------------------------------------------
B D                  Microbat  ctcatg----gcc----g----------------------------------------------------
B D                     Shrew  acgactcgtgact----g----------------------------------------------------
              Star-nosed mole  ttgatt----gct----g----------------------------------------------------
B D                  Elephant  tttatc----gct----g----------------------------------------------------
B D                   Manatee  tttatt----gct----g----------------------------------------------------
                     Aardvark  tttatt----gct----g----------------------------------------------------
B D                    Tenrec  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ======================================================================
B D           Squirrel monkey  ======================================================================
B D                 Armadillo  ======================================================================
B D            Naked mole-rat  ----------------------------------------------------------------------
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
B D                 Tetraodon  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Zebrafish  ======================================================================
B D                    Medaka  ======================================================================
B D             X. tropicalis  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D               Stickleback  ======================================================================
B D       Medium ground finch  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
          Southern platyfish  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
  D              Mallard duck  ======================================================================
            Cape golden mole  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                    Lizard  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D               Zebra finch  ======================================================================
  D       Collared flycatcher  ======================================================================

                        Human  ----gaagg
                        Chimp  ----gaagg
                      Gorilla  ----gaagg
                    Orangutan  ----gaagg
                       Gibbon  ----aaagg
                       Rhesus  ----gaagg
          Crab-eating macaque  ----gaagg
                       Baboon  ----gaagg
                 Green monkey  ----gaagg
                     Marmoset  ----gaagc
                     Bushbaby  ----aaagg
           Chinese tree shrew  ----gaagg
                     Squirrel  ----ggagg
       Lesser Egyptian jerboa  ----gaagt
                 Prairie vole  ----ggagg
              Chinese hamster  ----gaagg
               Golden hamster  ----gaagg
                        Mouse  ----gaagg
                          Rat  ----gaagg
                   Guinea pig  ----gtaga
                   Chinchilla  ----gaaga
             Brush-tailed rat  ----gaaga
                       Rabbit  ----gaagg
                         Pika  -------ac
                          Pig  ----gaagg
                       Alpaca  ----gaagg
               Bactrian camel  ----gaagg
                      Dolphin  ----gaagg
                 Killer whale  ----gaagg
             Tibetan antelope  tgcaggagg
                          Cow  ----gaagg
                        Sheep  tgcaggagg
                Domestic goat  tgcaggagg
                        Horse  ----ggagg
             White rhinoceros  ----gaagg
                          Cat  ----gaagg
                          Dog  ----gaagg
                      Ferret   ----gaaga
                        Panda  ----gaagg
               Pacific walrus  ----ggagg
                 Weddell seal  ----ggagg
             Black flying-fox  ----aaagg
                      Megabat  ----aaagg
                Big brown bat  ----gaagg
         David's myotis (bat)  ----gaggg
                     Microbat  ----gaggg
                        Shrew  ----caagg
              Star-nosed mole  ----ggagg
                     Elephant  ----gaagg
                      Manatee  ----gaagg
                     Aardvark  ----gaagg
                       Tenrec  =========
          Cape elephant shrew  =========
                     Hedgehog  =========
              Squirrel monkey  =========
                    Armadillo  =========
               Naked mole-rat  ---------
          Pundamilia nyererei  =========
                  Zebra mbuna  =========
        Burton's mouthbreeder  =========
                    Tetraodon  =========
          Princess of Burundi  =========
       Yellowbelly pufferfish  =========
                    Zebrafish  =========
                       Medaka  =========
                X. tropicalis  =========
                       Turkey  =========
                      Chicken  =========
                Scarlet macaw  =========
                   Budgerigar  =========
           Tibetan ground jay  =========
             Peregrine falcon  =========
                 Saker falcon  =========
                  Rock pigeon  =========
                  Stickleback  =========
          Medium ground finch  =========
                   Coelacanth  =========
                  Spotted gar  =========
           Southern platyfish  =========
                 Nile tilapia  =========
                         Fugu  =========
                 Mallard duck  =========
             Cape golden mole  =========
     Chinese softshell turtle  =========
               Painted turtle  =========
              Green seaturtle  =========
              Tasmanian devil  =========
                       Lizard  =========
                     Platypus  =========
           American alligator  =========
                  Zebra finch  =========
          Collared flycatcher  =========

Inserts between block 16 and 17 in window
B D                   Alpaca 5bp
              Bactrian camel 5bp
B D                  Dolphin 4bp
                Killer whale 4bp
            Tibetan antelope 181bp
B D                      Cow 6bp
B D                    Sheep 181bp
               Domestic goat 181bp

Alignment block 17 of 161 in window, 50313260 - 50313263, 4 bps 
B D                     Human  a------c--tt
B D                     Chimp  a------c--tt
B D                   Gorilla  a------c--tt
B D                 Orangutan  a------c--tt
B D                    Gibbon  a------c--tt
B D                    Rhesus  a------c--tt
B D       Crab-eating macaque  a------c--tt
B D                    Baboon  a------c--tt
B D              Green monkey  a------c--tt
B D                  Marmoset  t------c--tt
B D                  Bushbaby  actatttc--tg
           Chinese tree shrew  a------c--tt
B D                  Squirrel  a------c--t-
       Lesser Egyptian jerboa  g------a--tt
                 Prairie vole  a------c--tt
B D           Chinese hamster  a------c--tt
               Golden hamster  t------c--tt
B D                     Mouse  a------c--tc
B D                       Rat  c------c--tt
B D                Guinea pig  a------c----
                   Chinchilla  g------c----
             Brush-tailed rat  a------c----
B D                    Rabbit  g------c--tt
B D                      Pika  g------t--tt
B D                       Pig  g------c--tt
B D                    Alpaca  a------c--tt
               Bactrian camel  a------c--tt
B D                   Dolphin  a----ttc--tt
                 Killer whale  a----ttc--tt
             Tibetan antelope  a------c--tt
B D                       Cow  a------c--tt
B D                     Sheep  a------c--tt
                Domestic goat  a------c--tt
B D                     Horse  g------c--tt
B D          White rhinoceros  c------c--tt
B D                       Cat  a------c--tt
B D                       Dog  a------c----
B D                   Ferret   a------t--tt
B D                     Panda  a------c--tt
               Pacific walrus  a------c--tt
                 Weddell seal  a------c--tt
             Black flying-fox  a------c--tt
B D                   Megabat  a------c--tt
                Big brown bat  a------c--tt
         David's myotis (bat)  a------t--gc
B D                  Microbat  a------c--tc
B D                     Shrew  g------c--tt
              Star-nosed mole  a------c--ct
B D                  Elephant  a------c----
B D                   Manatee  a------ctt--
                     Aardvark  a------c----
B D                    Tenrec  ============
         Cape elephant shrew  ============
B D                  Hedgehog  ============
B D           Squirrel monkey  ============
B D                 Armadillo  ============
B D            Naked mole-rat  ------------
         Pundamilia nyererei  ============
                 Zebra mbuna  ============
       Burton's mouthbreeder  ============
B D                 Tetraodon  ============
         Princess of Burundi  ============
      Yellowbelly pufferfish  ============
B D                 Zebrafish  ============
B D                    Medaka  ============
B D             X. tropicalis  ============
B D                    Turkey  ============
B D                   Chicken  ============
  D             Scarlet macaw  ============
B D                Budgerigar  ============
          Tibetan ground jay  ============
  D          Peregrine falcon  ============
  D              Saker falcon  ============
  D               Rock pigeon  ============
B D               Stickleback  ============
B D       Medium ground finch  ============
B D                Coelacanth  ============
                 Spotted gar  ============
          Southern platyfish  ============
B D              Nile tilapia  ============
B D                      Fugu  ============
  D              Mallard duck  ============
            Cape golden mole  ============
  D  Chinese softshell turtle  ============
  D            Painted turtle  ============
  D           Green seaturtle  ============
B D           Tasmanian devil  ============
B D                    Lizard  ============
B D                  Platypus  ============
B D        American alligator  ============
B D               Zebra finch  ============
  D       Collared flycatcher  ============

Inserts between block 17 and 18 in window
      Lesser Egyptian jerboa 205bp

Alignment block 18 of 161 in window, 50313264 - 50313384, 121 bps 
B D                     Human  cgtgtg------cctctaagaatc-ttggt-tccagtct-ttggtcaggtagctcc------aggaaa-t
B D                     Chimp  cgtgtg------cctctaaaaatc-ttggt-tccagtct-ttggtcacgtagctcc------aggaaa-t
B D                   Gorilla  cgtgtg------cctctaagaatc-ttggt-tccagtct-ttggtcaggtagctcc------aggaaa-t
B D                 Orangutan  cgtgtg------cctcttagaatc-ttggt-tccagtct-ttggtcaggtagctcc------aggaaa--
B D                    Gibbon  cgtgtg------cctcttagaatc-ttggt-tccagtct-ttggtcaggtagctcc------aggaaa-t
B D                    Rhesus  cgtgtg------cctcttagaatc-ttggt-tccagtct-ttggtcaggtggctcc------aggaaa-t
B D       Crab-eating macaque  cgtgtg------cctcttagaatc-ttggt-tccagtct-ttggtcaggtggctcc------aggaaa-t
B D                    Baboon  cgtgtg------cctcttagaatc-ttggt-tccagtct-ttggtcaggtggctcc------aggaaa-t
B D              Green monkey  cgtgtg------cctcttagaatc-ttggt-tccagtct-ttggtcaggtggctcc------aggaaa-t
B D                  Marmoset  cacgtg------cctgttagaatc-ttggt-tccagtct-ttggtcaggtggctcc------aggaaa-t
B D                  Bushbaby  tatttg------cctgtttgattc-ttggt-tgcagtc-------------actca------gggaag-t
           Chinese tree shrew  ----ta------cctgtttgactt-ttgat-tctagtcc-atagacaagtgactca------aggaag-t
B D                  Squirrel  -------------------taagg-ctgttttccagtc-----attaggtacctct------gg-----g
                 Prairie vole  -----g------tt-ggttaaatg-ttggt-tccagct-----agtaggtggctct------ggctca-g
B D           Chinese hamster  -----g---------gtttgaata-ttggt-gccagcc--agtagtaggtggctta------ggcatg-g
               Golden hamster  -----g---------gtttgaatg-ttggt---cagtc-----agtaggtagctta------ggcatg-g
B D                     Mouse  -----g------ctggtttgaatg-ttggt-tccagcc-----agtaggtggctca------ggttca-a
B D                       Rat  -----g------ccggtttgaagg-ttggt-tccagcc-----agtaggtggctca------ggc-----
B D            Naked mole-rat  ---tag------tctttttgaatc-ttggt-gccaatc-----g--------------------------
B D                Guinea pig  --tttg------tctttttgaatc-ttgat-tcctgtc-----a--------------------------
                   Chinchilla  ---ttg------tctttttgcatc-ttggt-tccaatc-----g--------------------------
             Brush-tailed rat  ---ttg------tctatttgaatc-ttgac-tccagtc-----g--------------------------
B D                    Rabbit  -------------------gacttgcctgg-tcaggtcg-ctaacaaggtggctct------gagaa---
B D                      Pika  -------------------gagtc-tcagg-tccagtc--ctgagcaggtggccct------gggaa---
B D                       Pig  -----g---atacctctctgaat--ttggc-tccactta-ttaatcaggtagcttg------gggaag-t
B D                    Alpaca  -----g------gctgtccgaat--ttgtc-tccagtta-ttagtcgggtagcttg------gggaag-t
               Bactrian camel  -----g------cctgtctgaat--ttgtc-tccagtta-ttagtcgggtagcttg------gggaag-t
B D                   Dolphin  -----g------cctgtgtgaat--ttggc-tccagtta-ttagtcgggtagcttg------gggaag-t
                 Killer whale  -----g------cctgtgtgaat--ttggc-tccagtta-ttagtcgggtagcttg------gggaag-t
             Tibetan antelope  -----g------cctgtctgaat--ttgac-tccagtta-ttagtcacatagcatg------ggaaag-t
B D                       Cow  -----g------cctgtctgaat--ttggc-tccagtta-ttaatcacatagcttg------ggaaag-t
B D                     Sheep  -----g------cctgtctgaat--ttggc-tccagtta-ttagtcacatagcttg------ggaaag-t
                Domestic goat  -----g------cctgtctgaat--ttggc-tccagtta-ctagtcacatagcttg------ggaaag-t
B D                     Horse  -----t---------gtgtgaat--ctggt-tcgggtca-ttcgtcggg---cttt------gggagg-t
B D          White rhinoceros  -----t---------gtttgaat--ttggt-tccggttg-ttagtcagg-gccttg------gagaag-t
B D                       Cat  -----t---------g-----at--ttggt-tccaactgtttagactggtggcttg------gggaag-t
B D                       Dog  ----------------tttgaat--ttggt-tccagccc-gtggtctggttgcttg------tgaatc-t
B D                   Ferret   -----t---------gtttgaat--ttgat-tccaggta-ttagtctgatggcttg------gggaag-t
B D                     Panda  -----t---------gtttgaat--ttgct-tccagcta-ttagtctggtggcttg------gggagg-t
               Pacific walrus  -----t---------gtttgaac--ttggt-tccagcca-ttagtctggtggcttg------gggaag-t
                 Weddell seal  -----t---------gtttgaat--ttggt-tccagcca-ctagtctggtggcttg------gggaag-t
             Black flying-fox  -----ta-cttgcctgtttgtat--ttggt-tccagtca-tcagtcagatgactga------gggaagtc
B D                   Megabat  -----ta-cttgcctgtttgtat--ttggt-tccagtca-tcagtcagatgactga------gggaagtc
                Big brown bat  -----ta-cctgcccgtttggat--ttggt--------------------ggcttc------tggaa--g
         David's myotis (bat)  -----ta-cctgcccgtttggat--ttggt-tccaggcc-tcag----ggggcttc------tggag--c
B D                  Microbat  -----ta-cctgcccgtctggat--ttggt-tccaggcg-ttagtcatggggcttc------tggag--c
B D                     Shrew  -----g------cccattgggat--ttggt-ttctggtt-ttgggcagatggcttg------ggaaag-a
              Star-nosed mole  -----g------cctatt-tgac--ttatg-ttctaatt-atgggta-aggacttgcctatttgaatt-c
B D                  Elephant  ------tactcgcctgtttgaatc-ttggc-acgcattc----gcttggccacttg------gggaag-t
B D                   Manatee  ------tactggcctgtttgaatc-ttggc-acgtattc----tcttggtgacttt------gggaag-t
                     Aardvark  ------tacttgcctgttcgaacc-gtggc-acatattg----gcctgatgacttt------gggaag-t
      Lesser Egyptian jerboa  ======================================================================
B D                    Tenrec  ======================================================================
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ======================================================================
B D           Squirrel monkey  ======================================================================
B D                 Armadillo  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
B D                 Tetraodon  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Zebrafish  ======================================================================
B D                    Medaka  ======================================================================
B D             X. tropicalis  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D             Scarlet macaw  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D               Stickleback  ======================================================================
B D       Medium ground finch  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
          Southern platyfish  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
  D              Mallard duck  ======================================================================
            Cape golden mole  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                    Lizard  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D               Zebra finch  ======================================================================
  D       Collared flycatcher  ======================================================================

                        Human  ca----cttca--cct-----ctttgcct----caga-cc------------------------------
                        Chimp  ca----cttca--cct-----ctttgcct----caga-cc------------------------------
                      Gorilla  ca----cttca--cct-----ctttgcct----caga-cc------------------------------
                    Orangutan  --------tca--cct-----ctttgcct----cagc-cc------------------------------
                       Gibbon  ca----cttca--cct-----ctttgcct----caga-cc------------------------------
                       Rhesus  ca----cttca--cct-----ctttgcgt----ccga-cc------------------------------
          Crab-eating macaque  ca----cttca--cct-----ctttgcgt----ccga-cc------------------------------
                       Baboon  ca----cttca--cct-----ctttgcgt----ccga-cc------------------------------
                 Green monkey  ca----cttca--cct-----ctttgcct----ccga-cc------------------------------
                     Marmoset  ca----cttca--cct-----ctttgcct----caga---------------------------------
                     Bushbaby  ca----tttca--ctt-----ccttgact----caaaact------------------------------
           Chinese tree shrew  ag----tttga--cct-----ct-----t----caaa-ac------------------------------
                     Squirrel  aagtcacttaa--cct-----ctttgcct----caga-cc------------------------------
                 Prairie vole  gaaaacctcat--cag---------acct----caga-ca------------------------------
              Chinese hamster  agaaatcttat--cacacacactgcacct----caga-ta------------------------------
               Golden hamster  agaaatcttat--cac-----ctccacgt----caga-ca------------------------------
                        Mouse  ------cctat--cat-----ctccacct----caga-ca------------------------------
                          Rat  ----------t--cat-----cttc-ccc----caga-ca------------------------------
               Naked mole-rat  ------tttgt--cac-----ctccgcct----tagg-ct------------------------------
                   Guinea pig  ------tttgt--cgc-----ctc----t----taga-cc------------------------------
                   Chinchilla  ------cttgt--cac-----ctctgtct----taga-cc------------------------------
             Brush-tailed rat  ------tttgt--cac-----ctctaatt----tagc-cc------------------------------
                       Rabbit  ------gccgt--ttc-----acctgtct----aaga-ct------------------------------
                         Pika  ------gtcgtggttc-----ccctgcct----tggg-tc------------------------------
                          Pig  ca----tttca--cct-----cttcgcct----caga-ac------------------------------
                       Alpaca  ca----gttca--cct-----ctctgctt----caga-cc------------------------------
               Bactrian camel  ca----gttca--cct-----ctttgctt----caga-cc------------------------------
                      Dolphin  ca----cttca--cct-----ctttgcct----caga-cc------------------------------
                 Killer whale  ca----cttca--cct-----ctttgcct----caga-cc------------------------------
             Tibetan antelope  gg----agtca--ccc-----ctttccct----cagc-cc------------------------------
                          Cow  gg----agtca--ccc-----ctttccct----tagc-cc------------------------------
                        Sheep  gg----agtca--ccc-----ctttccct----cagc-cc------------------------------
                Domestic goat  gg----agtca--ccc-----ctttccct----cagc-cc------------------------------
                        Horse  ca----gctca--ccc-----ccctgcct----ccga-c-------------------------------
             White rhinoceros  ca----cttca--ccc-----ctttgcct----ctga-cc------------------------------
                          Cat  ca----cttcg--tct-----ct--gcct----cgga-t-------------------------------
                          Dog  ca----tttca--cct-----ctttgcct----tagt-tc------------------------------
                      Ferret   ca----tttcg--cct-----ctttgcct----caga-tc------------------------------
                        Panda  ca----tttcg--cct-----cttggcct----caga-tc------------------------------
               Pacific walrus  ca----tttcg--cct-----cttcgcct----caga-tt------------------------------
                 Weddell seal  ca----tttcg--cct-----cttcgcct----caga-tg------------------------------
             Black flying-fox  ca----tttcc--cct-----ctatgcct----caga-cc------------------------------
                      Megabat  ca----tttcc--cct-----ctatgcct----caga-cc------------------------------
                Big brown bat  cc----attca--ccg-----ctgtgcccggccctgc-ccg-----------------------------
         David's myotis (bat)  ct----tttcg--cct-----ctgtgccc------gc-ccgnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
                     Microbat  ct----tttcg--cct-----ctgtgccc------gc-ccg-----------------------------
                        Shrew  ca----tttca--tct-----ct--gtca----tagc-cc------------------------------
              Star-nosed mole  cg----ttcca--att-----at--ggct----tgcc-tc------------------------------
                     Elephant  ca----tttca--cct-----ctc--ccg----caga-ct------------------------------
                      Manatee  ca----tttca--tct-----ctc--cct----caga-ct------------------------------
                     Aardvark  ca----tttcc--cct-----ctt--cct----caga-gt------------------------------
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
              Squirrel monkey  ======================================================================
                    Armadillo  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
                    Tetraodon  ======================================================================
          Princess of Burundi  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Zebrafish  ======================================================================
                       Medaka  ======================================================================
                X. tropicalis  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                Scarlet macaw  ======================================================================
                   Budgerigar  ======================================================================
           Tibetan ground jay  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                  Stickleback  ======================================================================
          Medium ground finch  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
           Southern platyfish  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
                 Mallard duck  ======================================================================
             Cape golden mole  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
              Tasmanian devil  ======================================================================
                       Lizard  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                  Zebra finch  ======================================================================
          Collared flycatcher  ======================================================================

                        Human  -----------------------------ctcctcag--------tga---actagg-aatgatagcagt
                        Chimp  -----------------------------ctcctcag--------tga---actagg-aatgatagcggt
                      Gorilla  -----------------------------ctcctctg--------tga---actagg-aatgttagcagt
                    Orangutan  -----------------------------ctcctctg--------tga---actggg-aatgatagcaat
                       Gibbon  -----------------------------ctcctctg--------tga---actacg-aatgatagcaat
                       Rhesus  -----------------------------ctcctctg--------tga---actagg-aatgatagcagt
          Crab-eating macaque  -----------------------------ctcctctg--------tga---actagg-aatgatagcagt
                       Baboon  -----------------------------ctcctctg--------tga---actagg-aatgatagcagt
                 Green monkey  -----------------------------ctcctctg--------tga---actagg-aatgatagcagt
                     Marmoset  -----------------------------cgcctctg--------tga---actagg-aatgatagcaat
                     Bushbaby  -----------------------------ttcctttg--------------------------------t
           Chinese tree shrew  -----------------------------gtcccctg--------tga---accagg-aataatagcagg
                     Squirrel  -----------------------------cttctctg--------tga---aca----------------
                 Prairie vole  -----------------------------ctattctg--------ttt---act----------------
              Chinese hamster  -----------------------------cacttctg--------ttt---act----------------
               Golden hamster  -----------------------------cacttctg--------ttt---act----------------
                        Mouse  -----------------------------attttctg--------tct---g-a----------------
                          Rat  -----------------------------ctcttctg--------tct---g-g----------------
               Naked mole-rat  -----------------------------ctcctctg--------tga---act----------------
                   Guinea pig  -----------------------------ctcctctg--------tga---act----------------
                   Chinchilla  -----------------------------ttgctctg--------tga---act----------------
             Brush-tailed rat  -----------------------------ctgccctg--------tga---act----------------
                       Rabbit  -----------------------------gtccacaggtcctcagtga---gct----------------
                         Pika  -----------------------------atcctcag---------------------------------
                          Pig  -----------------------------ctcctctg--------tga---actagg-agt---------
                       Alpaca  -----------------------------ctcctctg--------tga---accagg-agtaatagcagg
               Bactrian camel  -----------------------------ctcctctg--------tga---accagg-agtaatagcagg
                      Dolphin  -----------------------------cttctctg--------tga---actagg-agtaatagcagg
                 Killer whale  -----------------------------cttctctg--------tga---actagg-agtaatagcagg
             Tibetan antelope  -----------------------------ctcctgtg--------tga---attatg-agtgat-gtagg
                          Cow  -----------------------------ctcctctg--------tga---actatg-agtgat-gtagg
                        Sheep  -----------------------------ctcctgtg--------tga---actatg-agtgat-gtagg
                Domestic goat  -----------------------------ctcctgtg--------tga---actatc-agtgat-gtagg
                        Horse  -------------------------------cctctg--------gga---act--g-agcaccggccgc
             White rhinoceros  -----------------------------ctcctctg--------gga---act-gg-agtaatggcagt
                          Cat  -----------------------------ctcttctg--------tga---actagg-agtaatagctgt
                          Dog  -----------------------------ctcctctg--------tga---actagg-agtaata---at
                      Ferret   -----------------------------ctcctctg--------tgg---accagg-agtacaagccgt
                        Panda  -----------------------------ctgcgctg--------gga---actagg-agtatgagccgt
               Pacific walrus  -----------------------------ctcctctg--------tga---actagg-agtgagagccgt
                 Weddell seal  -----------------------------ctcctctg--------tga---actagg-agtgagagtcgt
             Black flying-fox  -----------------------------ctcccttg--------tga---actaagtaatagta-ttgt
                      Megabat  -----------------------------ctcctttg--------tga---actaagtaatagta-ttgt
                Big brown bat  -----------------------------ccctccca--------gga---aggtgg-accaagg-gcag
         David's myotis (bat)  nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnca--------tga---actagg-attaatg-tcgg
                     Microbat  -----------------------------cccgccca--------tga---accagg-actaatg-tcgg
                        Shrew  --------------------------------tcctg--------tgc---tctaag-agtagcaaatag
              Star-nosed mole  -----------------------------agaccctg--------tataaacctgga-agt-gttattgt
                     Elephant  -----------------------------cgcctc----------tga---actaag-agcagtggcaat
                      Manatee  -----------------------------ctcctc----------tga---accaag-agtagtagcaat
                     Aardvark  -----------------------------cgcctctg--------tga---actagg-agta-cggtaat
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
              Squirrel monkey  ======================================================================
                    Armadillo  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
                    Tetraodon  ======================================================================
          Princess of Burundi  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Zebrafish  ======================================================================
                       Medaka  ======================================================================
                X. tropicalis  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                Scarlet macaw  ======================================================================
                   Budgerigar  ======================================================================
           Tibetan ground jay  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                  Stickleback  ======================================================================
          Medium ground finch  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
           Southern platyfish  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
                 Mallard duck  ======================================================================
             Cape golden mole  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
              Tasmanian devil  ======================================================================
                       Lizard  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                  Zebra finch  ======================================================================
          Collared flycatcher  ======================================================================

                        Human  gtctccctagtctt
                        Chimp  gtctccctagtctt
                      Gorilla  gtctccctagtctt
                    Orangutan  gtctccctagtctt
                       Gibbon  gtctccctaatctt
                       Rhesus  gtctccctaatctt
          Crab-eating macaque  gtctccctaatctt
                       Baboon  gtctccctaatctt
                 Green monkey  gtctccctaatctt
                     Marmoset  gtcttcctaatttt
                     Bushbaby  gtctccttcat---
           Chinese tree shrew  gtctcctttat---
                     Squirrel  --------------
                 Prairie vole  --------------
              Chinese hamster  --------------
               Golden hamster  --------------
                        Mouse  --------------
                          Rat  --------------
               Naked mole-rat  --------------
                   Guinea pig  --------------
                   Chinchilla  --------------
             Brush-tailed rat  --------------
                       Rabbit  --------------
                         Pika  --------------
                          Pig  -tctccctcat---
                       Alpaca  gtctccctcat---
               Bactrian camel  gtctccctcat---
                      Dolphin  atctccttcat---
                 Killer whale  atctccttcat---
             Tibetan antelope  gtccccctcat---
                          Cow  gtccctctcat---
                        Sheep  gtccccctcat---
                Domestic goat  gtccccctcat---
                        Horse  g--ctgcccat---
             White rhinoceros  gt-ctccccat---
                          Cat  gtctctcacac---
                          Dog  gtcccgcttat---
                      Ferret   gtccctctcag---
                        Panda  gtccctgtcgt---
               Pacific walrus  gtccctctcat---
                 Weddell seal  gtccctcgcat---
             Black flying-fox  gtctttgat-----
                      Megabat  gtcttggat-----
                Big brown bat  agtccccct-----
         David's myotis (bat)  gtctccctc-----
                     Microbat  gtctccctc-----
                        Shrew  gggaggctccc---
              Star-nosed mole  ggccgcctttt---
                     Elephant  gtcttcctcac---
                      Manatee  gtcttcctcag---
                     Aardvark  gtcttcctaac---
       Lesser Egyptian jerboa  ==============
                       Tenrec  ==============
          Cape elephant shrew  ==============
                     Hedgehog  ==============
              Squirrel monkey  ==============
                    Armadillo  ==============
          Pundamilia nyererei  ==============
                  Zebra mbuna  ==============
        Burton's mouthbreeder  ==============
                    Tetraodon  ==============
          Princess of Burundi  ==============
       Yellowbelly pufferfish  ==============
                    Zebrafish  ==============
                       Medaka  ==============
                X. tropicalis  ==============
                       Turkey  ==============
                      Chicken  ==============
                Scarlet macaw  ==============
                   Budgerigar  ==============
           Tibetan ground jay  ==============
             Peregrine falcon  ==============
                 Saker falcon  ==============
                  Rock pigeon  ==============
                  Stickleback  ==============
          Medium ground finch  ==============
                   Coelacanth  ==============
                  Spotted gar  ==============
           Southern platyfish  ==============
                 Nile tilapia  ==============
                         Fugu  ==============
                 Mallard duck  ==============
             Cape golden mole  ==============
     Chinese softshell turtle  ==============
               Painted turtle  ==============
              Green seaturtle  ==============
              Tasmanian devil  ==============
                       Lizard  ==============
                     Platypus  ==============
           American alligator  ==============
                  Zebra finch  ==============
          Collared flycatcher  ==============

Inserts between block 18 and 19 in window
B D                 Marmoset 6249bp

Alignment block 19 of 161 in window, 50313385 - 50313413, 29 bps 
B D                     Human  agggccg--tt-g----------ag----cg-gattaca-------cgagataa
B D                     Chimp  agggccg--tc-g----------ag----ca-gattaca-------cgagataa
B D                   Gorilla  agggccg--tt-g----------ag----cg-gattaca-------cgagataa
B D                 Orangutan  agggccg--tt-g----------ag----cg-gattaca-------cgagataa
B D                    Gibbon  agggcag--tt-g----------ag----cg------------------gataa
B D                    Rhesus  agggccg--tt-g----------ag----ca-gattaca-------cgagata-
B D       Crab-eating macaque  agggccg--tt-g----------ag----ca-gattaca-------cgagata-
B D                    Baboon  agggccg--tt-g----------ag----ca-gattaca-------cgagata-
B D              Green monkey  agggccg--tt-g----------ag----cg-gattaca-------cgagata-
B D                  Bushbaby  agggccgtttt-g----------gg----tg-gattacc-------agagataa
           Chinese tree shrew  agagctg--tt-g----------ag----ca-ggttacc-------tgaaata-
B D                  Squirrel  tgggtct--tt-t----------ag----ca-ga-------ctgtttgagagaa
                 Prairie vole  agtgcca--tt-g----------ag----ca-ggtaata--gtgtatatgagaa
B D           Chinese hamster  agtgtca--ct-g----------ag----ca-gatcata--gtg----tgagaa
               Golden hamster  agtgcca--ct-g----------agcagaca-gaccatg--gtgcatatgagaa
B D                     Mouse  agtgccc--ct-g----------ag----ca-gataatagtgtgtgtatgagaa
B D                       Rat  agtgccc--tt-g----------ag----ca-gataata--gtgcctatgagaa
B D            Naked mole-rat  aggggcg--tt-a---------cac----ca-gatta-----------------
B D                Guinea pig  ggccccg--tt-a---------cac----ca-gatagag---------------
                   Chinchilla  ggcccca--tt-a---------cac----ca-gctgggc---------------
             Brush-tailed rat  agcccca--tt-a---------cac----ca-gattggg---------------
B D                    Rabbit  ggacccc--cc-cacccacccccag----ca-gatgaca---ggagcctgagg-
B D                      Pika  ------------------------g----ca-gatggca---------------
B D                       Pig  agggctt--tttt----------tg----ca-gattata-------tgatataa
B D                    Alpaca  agggctt--ta-t----------tg----cg-ggttaca-------tgagataa
               Bactrian camel  agggctt--ta-t----------tg----ca-ggttaca-------tgaggtaa
B D                   Dolphin  gtggatt--ac---------------------------a-------cgagataa
                 Killer whale  gtggatt--ac---------------------------a-------cgagataa
             Tibetan antelope  aggactt--tt-g----------tc----c---tatgag-------caagataa
B D                       Cow  aggactt--tt-g----------tc----c---tatgag-------caagataa
B D                     Sheep  aggactt--tt----------------------tatgag-------caagataa
                Domestic goat  aggactt--tt-g----------tc----c---tatgag-------caagataa
B D                     Horse  a-ggctc--gt-g----------tg-----g-ggtggcg-------ggcg--gc
B D          White rhinoceros  agggctg--gt-g----------tg-----g-cattgca-------ggagatga
B D                       Cat  a-ggctg--tt-g----------tg----tg-gattaca-------tgcaataa
B D                       Dog  agggctg--tt-g----------tg----tg-gattgca-------ggagataa
B D                   Ferret   ggggctc--tt-g----------tg----tg-gagtaca-------tgagaaaa
B D                     Panda  agggctg--gt-g----------tg----tg-gatgaca-------tgagatga
               Pacific walrus  agggctg--tt-g----------tg----tg-gagtaca-------cgagataa
                 Weddell seal  agggctg--tt-g----------cg----tg-gagtaca-------tgagataa
             Black flying-fox  -----------------------------------taca-------tgagataa
B D                   Megabat  -----------------------------------taca-------tgagataa
                Big brown bat  --------------------------------------------------ctga
         David's myotis (bat)  --------------------------------------------------atac
B D                  Microbat  --------------------------------------------------ataa
B D                     Shrew  a-----------------------------------tat-------tgcactga
              Star-nosed mole  agaactt--tt-t----------tg----at-gatttcc-------tgagctga
B D                  Elephant  agggctg--tt-g----------ag----ctagagttca-------tgagataa
B D                   Manatee  agggctg--tt-g----------ag----atagattaca-------cgagataa
                     Aardvark  agggtta--tt-g----------ag----ct-gattatg-------taagataa
      Lesser Egyptian jerboa  ======================================================
B D                    Tenrec  ======================================================
         Cape elephant shrew  ======================================================
B D                  Hedgehog  ======================================================
B D           Squirrel monkey  ======================================================
B D                 Armadillo  ======================================================
B D                  Marmoset  ======================================================
         Pundamilia nyererei  ======================================================
                 Zebra mbuna  ======================================================
       Burton's mouthbreeder  ======================================================
B D                 Tetraodon  ======================================================
         Princess of Burundi  ======================================================
      Yellowbelly pufferfish  ======================================================
B D                 Zebrafish  ======================================================
B D                    Medaka  ======================================================
B D             X. tropicalis  ======================================================
B D                    Turkey  ======================================================
B D                   Chicken  ======================================================
  D             Scarlet macaw  ======================================================
B D                Budgerigar  ======================================================
          Tibetan ground jay  ======================================================
  D          Peregrine falcon  ======================================================
  D              Saker falcon  ======================================================
  D               Rock pigeon  ======================================================
B D               Stickleback  ======================================================
B D       Medium ground finch  ======================================================
B D                Coelacanth  ======================================================
                 Spotted gar  ======================================================
          Southern platyfish  ======================================================
B D              Nile tilapia  ======================================================
B D                      Fugu  ======================================================
  D              Mallard duck  ======================================================
            Cape golden mole  ======================================================
  D  Chinese softshell turtle  ======================================================
  D            Painted turtle  ======================================================
  D           Green seaturtle  ======================================================
B D           Tasmanian devil  ======================================================
B D                    Lizard  ======================================================
B D                  Platypus  ======================================================
B D        American alligator  ======================================================
B D               Zebra finch  ======================================================
  D       Collared flycatcher  ======================================================

Inserts between block 19 and 20 in window
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                    Shrew 80bp
             Star-nosed mole 1bp

Alignment block 20 of 161 in window, 50313414 - 50313419, 6 bps 
B D                     Human  gg-t-ca-g
B D                     Chimp  gg-t-ca-g
B D                   Gorilla  gg-t-ca-t
B D                 Orangutan  gg-t-ca-t
B D                    Gibbon  gg-t-ca-t
B D                  Bushbaby  ggct-ct-t
           Chinese tree shrew  -gct-cc-t
B D                  Squirrel  ggct-ca-t
                 Prairie vole  tagt-ca-c
B D           Chinese hamster  tatt-ca-t
               Golden hamster  tatt-ca-t
B D                       Rat  gatt-cg-t
B D            Naked mole-rat  ---c-ct-t
B D                Guinea pig  --cc-ct-t
                   Chinchilla  --cc-ct-t
             Brush-tailed rat  --cc-ct-t
B D                    Rabbit  --ct-tc-t
B D                      Pika  -----tc--
B D                       Pig  -gct-ta--
B D                    Alpaca  -act-ga--
               Bactrian camel  -gct-ga--
B D                   Dolphin  -gct-ca--
                 Killer whale  -gct-ca--
             Tibetan antelope  -gct-ca--
B D                       Cow  -act-ca--
B D                     Sheep  -gct-ca--
                Domestic goat  -gct-ca--
B D                     Horse  -gccccg--
B D          White rhinoceros  -gctccg--
B D                       Cat  -gcc-ca--
B D                       Dog  -gct-ca--
B D                   Ferret   -gct-cg--
B D                     Panda  -gct-cc--
               Pacific walrus  -gct-cg--
                 Weddell seal  -gct-cg--
             Black flying-fox  -gct-ca--
B D                   Megabat  -gct-ca--
                Big brown bat  -gct-ca--
         David's myotis (bat)  -gct-ca--
B D                  Microbat  -gct-ca--
              Star-nosed mole  -gct-ctt-
B D                  Elephant  ggct-tg--
B D                   Manatee  ggct-tg--
                     Aardvark  ggca-tg--
B D                     Mouse  ---------
      Lesser Egyptian jerboa  =========
B D                    Tenrec  =========
         Cape elephant shrew  =========
B D                  Hedgehog  =========
B D                     Shrew  =========
B D           Squirrel monkey  =========
B D                    Rhesus  ---------
B D              Green monkey  ---------
B D                 Armadillo  =========
B D                  Marmoset  =========
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
B D                 Tetraodon  =========
         Princess of Burundi  =========
B D       Crab-eating macaque  ---------
      Yellowbelly pufferfish  =========
B D                 Zebrafish  =========
B D                    Medaka  =========
B D             X. tropicalis  =========
B D                    Turkey  =========
B D                   Chicken  =========
  D             Scarlet macaw  =========
B D                Budgerigar  =========
          Tibetan ground jay  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
  D               Rock pigeon  =========
B D               Stickleback  =========
B D       Medium ground finch  =========
B D                Coelacanth  =========
                 Spotted gar  =========
          Southern platyfish  =========
B D              Nile tilapia  =========
B D                      Fugu  =========
  D              Mallard duck  =========
            Cape golden mole  =========
  D  Chinese softshell turtle  =========
  D            Painted turtle  =========
  D           Green seaturtle  =========
B D           Tasmanian devil  =========
B D                    Lizard  =========
B D                  Platypus  =========
B D        American alligator  =========
B D               Zebra finch  =========
  D       Collared flycatcher  =========
B D                    Baboon  ---------

Inserts between block 20 and 21 in window
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 165bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                 Elephant 1bp
B D                  Manatee 1bp
                    Aardvark 1bp

Alignment block 21 of 161 in window, 50313420 - 50313436, 17 bps 
B D                     Human  caggt-gtttagcacagt
B D                     Chimp  caggt-gtttagcacagt
B D                   Gorilla  caggt-gtttagcacagt
B D                 Orangutan  caggt-gtttagcacagg
B D                    Gibbon  caggt-gtttagcacagt
B D                    Rhesus  -aggt-gtttagcacagc
B D       Crab-eating macaque  -aggt-gtttagcacagc
B D                    Baboon  -aggt-gtttagcacagc
B D              Green monkey  -aggt-gtttagcacagc
B D                  Bushbaby  caggt-gttgcacacagg
           Chinese tree shrew  tagat-gttcc-cctagt
B D                  Squirrel  cagat-cttgagcacagt
                 Prairie vole  cagat-gttcaacttaat
B D           Chinese hamster  cagac-attgaactcaac
               Golden hamster  cagat-gttgaactcagc
B D                     Mouse  ---------gagcttggc
B D                       Rat  cagat-gtggagctcggc
B D            Naked mole-rat  cagaa-gttgatcacggt
B D                Guinea pig  cagaa-gttgatcacagt
                   Chinchilla  cggaa-gctgatcacagt
             Brush-tailed rat  cggaa-gttgatcacagt
B D                    Rabbit  ggggt-cctgagccaagt
B D                      Pika  --ggt-gttgagctaaaa
B D                       Pig  cagat-gtttagcacaga
B D                    Alpaca  cagat-gtttagcgcagt
               Bactrian camel  cagat-gtttagcgcagt
B D                   Dolphin  cagat-gt-tagcacagt
                 Killer whale  cagat-gt-tagcccagt
             Tibetan antelope  cagat-gtttagcacagt
B D                       Cow  caggt-ctcccgcattgc
B D                     Sheep  cagat-gtttagcacagt
                Domestic goat  cagat-gtttagcacagt
B D                     Horse  caggc--gtcagc-cagg
B D          White rhinoceros  cgggt-ggttagcacggg
B D                       Cat  agggt-gtttagcggagt
B D                       Dog  taggt-gtttagcacagt
B D                   Ferret   tgggt-ctttagcacagg
B D                     Panda  tgggt-gtttagcacagt
               Pacific walrus  tgggt-gtttagcacagt
                 Weddell seal  tgggt-gtttggcacagt
             Black flying-fox  tcaggtttttctcgcagt
B D                   Megabat  tcaggtttttctcgcagt
                Big brown bat  tcagg-ttttagcacagt
         David's myotis (bat)  tcagc-gcttagcacagc
B D                  Microbat  tcagc-tcttagcacagc
              Star-nosed mole  taggt-gtttaggtgagc
B D                  Elephant  ccggt-gtttagcacagt
B D                   Manatee  caggt-gtttaacacagt
                     Aardvark  caggt-gttcagcacagt
      Lesser Egyptian jerboa  ==================
B D                    Tenrec  ==================
         Cape elephant shrew  ==================
B D                  Hedgehog  ==================
B D                     Shrew  ==================
B D           Squirrel monkey  ==================
B D                 Armadillo  ==================
B D                  Marmoset  ==================
         Pundamilia nyererei  ==================
                 Zebra mbuna  ==================
       Burton's mouthbreeder  ==================
B D                 Tetraodon  ==================
         Princess of Burundi  ==================
      Yellowbelly pufferfish  ==================
B D                 Zebrafish  ==================
B D                    Medaka  ==================
B D             X. tropicalis  ==================
B D                    Turkey  ==================
B D                   Chicken  ==================
  D             Scarlet macaw  ==================
B D                Budgerigar  ==================
          Tibetan ground jay  ==================
  D          Peregrine falcon  ==================
  D              Saker falcon  ==================
  D               Rock pigeon  ==================
B D               Stickleback  ==================
B D       Medium ground finch  ==================
B D                Coelacanth  ==================
                 Spotted gar  ==================
          Southern platyfish  ==================
B D              Nile tilapia  ==================
B D                      Fugu  ==================
  D              Mallard duck  ==================
            Cape golden mole  ==================
  D  Chinese softshell turtle  ==================
  D            Painted turtle  ==================
  D           Green seaturtle  ==================
B D           Tasmanian devil  ==================
B D                    Lizard  ==================
B D                  Platypus  ==================
B D        American alligator  ==================
B D               Zebra finch  ==================
  D       Collared flycatcher  ==================

Inserts between block 21 and 22 in window
B D                    Panda 500bp

Alignment block 22 of 161 in window, 50313437 - 50313438, 2 bps 
B D                     Human  ga
B D                     Chimp  ga
B D                   Gorilla  ga
B D                 Orangutan  ga
B D                    Gibbon  ga
B D                    Rhesus  ga
B D       Crab-eating macaque  ga
B D                    Baboon  ga
B D              Green monkey  ga
B D                  Bushbaby  aa
           Chinese tree shrew  ga
B D                  Squirrel  ga
                 Prairie vole  ga
B D           Chinese hamster  aa
               Golden hamster  aa
B D                     Mouse  aa
B D                       Rat  aa
B D            Naked mole-rat  ga
B D                Guinea pig  ga
                   Chinchilla  ga
             Brush-tailed rat  ga
B D                    Rabbit  ga
B D                      Pika  ga
B D                       Pig  -a
B D                    Alpaca  -a
               Bactrian camel  -a
B D                   Dolphin  -a
                 Killer whale  -a
             Tibetan antelope  -a
B D                       Cow  -a
B D                     Sheep  -a
                Domestic goat  -a
B D                     Horse  ga
B D          White rhinoceros  gt
B D                       Cat  ga
B D                       Dog  ga
B D                   Ferret   ga
B D                     Panda  gg
               Pacific walrus  ga
                 Weddell seal  ca
             Black flying-fox  ga
B D                   Megabat  ga
                Big brown bat  ga
         David's myotis (bat)  ca
B D                  Microbat  ga
              Star-nosed mole  aa
B D                  Elephant  ga
B D                   Manatee  ga
                     Aardvark  ga
      Lesser Egyptian jerboa  ==
B D                    Tenrec  ==
         Cape elephant shrew  ==
B D                  Hedgehog  ==
B D                     Shrew  ==
B D           Squirrel monkey  ==
B D                 Armadillo  ==
B D                  Marmoset  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
B D                 Tetraodon  ==
         Princess of Burundi  ==
      Yellowbelly pufferfish  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
B D             X. tropicalis  ==
B D                    Turkey  ==
B D                   Chicken  ==
  D             Scarlet macaw  ==
B D                Budgerigar  ==
          Tibetan ground jay  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D               Rock pigeon  ==
B D               Stickleback  ==
B D       Medium ground finch  ==
B D                Coelacanth  ==
                 Spotted gar  ==
          Southern platyfish  ==
B D              Nile tilapia  ==
B D                      Fugu  ==
  D              Mallard duck  ==
            Cape golden mole  ==
  D  Chinese softshell turtle  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D           Tasmanian devil  ==
B D                    Lizard  ==
B D                  Platypus  ==
B D        American alligator  ==
B D               Zebra finch  ==
  D       Collared flycatcher  ==

Inserts between block 22 and 23 in window
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 41bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                      Cat 134bp
            Black flying-fox 1bp
B D                  Megabat 1bp
             Star-nosed mole 1bp

Alignment block 23 of 161 in window, 50313439 - 50313441, 3 bps 
B D                     Human  agc
B D                     Chimp  agc
B D                   Gorilla  agc
B D                 Orangutan  agc
B D                    Gibbon  agc
B D                    Rhesus  agc
B D       Crab-eating macaque  agc
B D                    Baboon  agc
B D              Green monkey  agc
B D                  Bushbaby  agc
           Chinese tree shrew  agc
B D                  Squirrel  agc
                 Prairie vole  agc
B D           Chinese hamster  agt
               Golden hamster  agc
B D                     Mouse  agc
B D                       Rat  acc
B D            Naked mole-rat  agt
B D                Guinea pig  aga
                   Chinchilla  agt
             Brush-tailed rat  agt
B D                    Rabbit  aga
B D                      Pika  aga
B D                       Pig  agt
B D                    Alpaca  agt
               Bactrian camel  agt
B D                   Dolphin  agt
                 Killer whale  agt
             Tibetan antelope  agt
B D                       Cow  aga
B D                     Sheep  aat
                Domestic goat  agt
B D                     Horse  agt
B D          White rhinoceros  agt
B D                       Cat  agt
B D                       Dog  agt
B D                   Ferret   agt
B D                     Panda  agt
               Pacific walrus  agt
                 Weddell seal  agt
             Black flying-fox  at-
B D                   Megabat  at-
                Big brown bat  ag-
         David's myotis (bat)  at-
B D                  Microbat  at-
              Star-nosed mole  ag-
B D                  Elephant  agc
B D                   Manatee  agc
                     Aardvark  agc
      Lesser Egyptian jerboa  ===
B D                    Tenrec  ===
         Cape elephant shrew  ===
B D                  Hedgehog  ===
B D                     Shrew  ===
B D           Squirrel monkey  ===
B D                 Armadillo  ===
B D                  Marmoset  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
B D                 Tetraodon  ===
         Princess of Burundi  ===
      Yellowbelly pufferfish  ===
B D                 Zebrafish  ===
B D                    Medaka  ===
B D             X. tropicalis  ===
B D                    Turkey  ===
B D                   Chicken  ===
  D             Scarlet macaw  ===
B D                Budgerigar  ===
          Tibetan ground jay  ===
  D          Peregrine falcon  ===
  D              Saker falcon  ===
  D               Rock pigeon  ===
B D               Stickleback  ===
B D       Medium ground finch  ===
B D                Coelacanth  ===
                 Spotted gar  ===
          Southern platyfish  ===
B D              Nile tilapia  ===
B D                      Fugu  ===
  D              Mallard duck  ===
            Cape golden mole  ===
  D  Chinese softshell turtle  ===
  D            Painted turtle  ===
  D           Green seaturtle  ===
B D           Tasmanian devil  ===
B D                    Lizard  ===
B D                  Platypus  ===
B D        American alligator  ===
B D               Zebra finch  ===
  D       Collared flycatcher  ===

Inserts between block 23 and 24 in window
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Dog 515bp

Alignment block 24 of 161 in window, 50313442 - 50313442, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Bushbaby  a
           Chinese tree shrew  a
B D                  Squirrel  a
                 Prairie vole  a
B D           Chinese hamster  a
               Golden hamster  a
B D                     Mouse  a
B D                       Rat  a
B D            Naked mole-rat  g
B D                Guinea pig  g
                   Chinchilla  g
             Brush-tailed rat  g
B D                    Rabbit  a
B D                      Pika  g
B D                       Pig  g
B D                    Alpaca  g
               Bactrian camel  g
B D                   Dolphin  g
                 Killer whale  g
             Tibetan antelope  g
B D                       Cow  g
B D                     Sheep  g
                Domestic goat  g
B D                       Cat  g
B D                       Dog  a
B D                   Ferret   a
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  a
B D                   Megabat  a
                Big brown bat  a
         David's myotis (bat)  a
B D                  Microbat  a
              Star-nosed mole  a
B D                  Elephant  a
B D                   Manatee  c
                     Aardvark  a
      Lesser Egyptian jerboa  =
B D                    Tenrec  =
         Cape elephant shrew  =
B D                  Hedgehog  =
B D                     Shrew  =
B D           Squirrel monkey  =
B D                 Armadillo  =
B D                  Marmoset  =
B D          White rhinoceros  =
B D                     Horse  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                 Tetraodon  =
         Princess of Burundi  =
      Yellowbelly pufferfish  =
B D                 Zebrafish  =
B D                    Medaka  =
B D             X. tropicalis  =
B D                    Turkey  =
B D                   Chicken  =
  D             Scarlet macaw  =
B D                Budgerigar  =
          Tibetan ground jay  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D               Rock pigeon  =
B D               Stickleback  =
B D       Medium ground finch  =
B D                Coelacanth  =
                 Spotted gar  =
          Southern platyfish  =
B D              Nile tilapia  =
B D                      Fugu  =
  D              Mallard duck  =
            Cape golden mole  =
  D  Chinese softshell turtle  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D           Tasmanian devil  =
B D                    Lizard  =
B D                  Platypus  =
B D        American alligator  =
B D               Zebra finch  =
  D       Collared flycatcher  =

Inserts between block 24 and 25 in window
B D                      Cat 4bp
B D                  Ferret  927bp
              Pacific walrus 514bp
                Weddell seal 500bp

Alignment block 25 of 161 in window, 50313443 - 50313447, 5 bps 
B D                     Human  tttgc
B D                     Chimp  tttgc
B D                   Gorilla  tttgc
B D                 Orangutan  tttgc
B D                    Gibbon  tttgc
B D                    Rhesus  tttgc
B D       Crab-eating macaque  tttgc
B D                    Baboon  tttgc
B D              Green monkey  tttgc
B D                  Bushbaby  tttgg
           Chinese tree shrew  ttagg
                 Prairie vole  ttagc
B D           Chinese hamster  ctagc
               Golden hamster  ctagc
B D                     Mouse  ttagc
B D                       Rat  ttagc
B D            Naked mole-rat  ttagg
B D                Guinea pig  ttagg
                   Chinchilla  ttagg
             Brush-tailed rat  ttagg
B D                       Pig  ttcaa
B D                    Alpaca  ctcga
               Bactrian camel  ctcga
B D                   Dolphin  ctcga
                 Killer whale  ctcga
             Tibetan antelope  ctcaa
B D                       Cow  ctcaa
B D                     Sheep  ctcaa
                Domestic goat  ctcaa
B D                     Horse  ctccg
B D          White rhinoceros  ctccg
B D                       Cat  ctaca
B D                       Dog  ctgga
B D                     Panda  ctgga
             Black flying-fox  cttga
B D                   Megabat  cttga
                Big brown bat  cccgg
         David's myotis (bat)  atcgg
B D                  Microbat  ctcgg
B D                  Elephant  ctcgg
B D                   Manatee  ctggg
                     Aardvark  attgg
      Lesser Egyptian jerboa  =====
B D                    Tenrec  =====
         Cape elephant shrew  =====
B D                  Hedgehog  =====
B D                     Shrew  =====
             Star-nosed mole  -----
B D                      Pika  -----
B D                    Rabbit  -----
B D                   Ferret   =====
B D           Squirrel monkey  =====
B D                 Armadillo  =====
B D                  Marmoset  =====
              Pacific walrus  =====
B D                  Squirrel  -----
                Weddell seal  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
B D                 Tetraodon  =====
         Princess of Burundi  =====
      Yellowbelly pufferfish  =====
B D                 Zebrafish  =====
B D                    Medaka  =====
B D             X. tropicalis  =====
B D                    Turkey  =====
B D                   Chicken  =====
  D             Scarlet macaw  =====
B D                Budgerigar  =====
          Tibetan ground jay  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
  D               Rock pigeon  =====
B D               Stickleback  =====
B D       Medium ground finch  =====
B D                Coelacanth  =====
                 Spotted gar  =====
          Southern platyfish  =====
B D              Nile tilapia  =====
B D                      Fugu  =====
  D              Mallard duck  =====
            Cape golden mole  =====
  D  Chinese softshell turtle  =====
  D            Painted turtle  =====
  D           Green seaturtle  =====
B D           Tasmanian devil  =====
B D                    Lizard  =====
B D                  Platypus  =====
B D        American alligator  =====
B D               Zebra finch  =====
  D       Collared flycatcher  =====

Alignment block 26 of 161 in window, 50313448 - 50313459, 12 bps 
B D                     Human  t-acgtgatgaca
B D                     Chimp  t-acgtgatgaca
B D                   Gorilla  t-acgtgatggca
B D                 Orangutan  t-acgtgatggca
B D                    Gibbon  t-acgtgatggaa
B D                    Rhesus  t-acgtgatggca
B D       Crab-eating macaque  t-acgtgatggca
B D                    Baboon  t-acgtgatggca
B D              Green monkey  t-acgtgatggca
B D                  Bushbaby  t-aaatggcggct
           Chinese tree shrew  t-aca--------
                 Prairie vole  t-----------t
B D           Chinese hamster  t-----------t
               Golden hamster  t-----------t
B D                     Mouse  t-----------t
B D                       Rat  t-----------t
B D            Naked mole-rat  t-taatgacag-t
B D                Guinea pig  t-aaatgacag-t
                   Chinchilla  t-aaatgacag-t
             Brush-tailed rat  t-aaatgacaa-t
B D                       Pig  taaaatgatggct
B D                    Alpaca  aaaaacggtggct
               Bactrian camel  aaaaacgatggtt
B D                   Dolphin  taaaatgatggct
                 Killer whale  taaaatgatggct
             Tibetan antelope  taaaatgatggtt
B D                       Cow  taaaatgatggtt
B D                     Sheep  taaaatgatggtt
                Domestic goat  taaaatgatggtt
B D                     Horse  t-ggatgactgct
B D          White rhinoceros  t-aaatgaatgct
B D                       Cat  t-ataaca-----
B D                       Dog  t-aaatgactact
B D                     Panda  t-aaattactgct
             Black flying-fox  t-aaatgactgct
B D                   Megabat  t-aaatgactgct
                Big brown bat  t-cattatt----
         David's myotis (bat)  t-agttgtc----
B D                  Microbat  t-agttgtc----
              Star-nosed mole  catcgtgagggct
B D                  Elephant  t-aaatgatggct
B D                   Manatee  t-gaatgatggtc
B D                    Tenrec  t-aaatgatggct
                     Aardvark  t-aaatgatggct
      Lesser Egyptian jerboa  =============
         Cape elephant shrew  =============
B D                  Hedgehog  =============
B D                     Shrew  =============
B D                      Pika  -------------
B D                    Rabbit  -------------
B D                   Ferret   =============
B D           Squirrel monkey  =============
B D                 Armadillo  =============
B D                  Marmoset  =============
              Pacific walrus  =============
B D                  Squirrel  -------------
                Weddell seal  =============
         Pundamilia nyererei  =============
                 Zebra mbuna  =============
       Burton's mouthbreeder  =============
B D                 Tetraodon  =============
         Princess of Burundi  =============
      Yellowbelly pufferfish  =============
B D                 Zebrafish  =============
B D                    Medaka  =============
B D             X. tropicalis  =============
B D                    Turkey  =============
B D                   Chicken  =============
  D             Scarlet macaw  =============
B D                Budgerigar  =============
          Tibetan ground jay  =============
  D          Peregrine falcon  =============
  D              Saker falcon  =============
  D               Rock pigeon  =============
B D               Stickleback  =============
B D       Medium ground finch  =============
B D                Coelacanth  =============
                 Spotted gar  =============
          Southern platyfish  =============
B D              Nile tilapia  =============
B D                      Fugu  =============
  D              Mallard duck  =============
            Cape golden mole  =============
  D  Chinese softshell turtle  =============
  D            Painted turtle  =============
  D           Green seaturtle  =============
B D           Tasmanian devil  =============
B D                    Lizard  =============
B D                  Platypus  =============
B D        American alligator  =============
B D               Zebra finch  =============
  D       Collared flycatcher  =============

Inserts between block 26 and 27 in window
B D                      Cat 158bp

Alignment block 27 of 161 in window, 50313460 - 50313462, 3 bps 
B D                     Human  tt---t
B D                     Chimp  tt---t
B D                   Gorilla  tt---t
B D                 Orangutan  tt---t
B D                    Gibbon  tt---t
B D                    Rhesus  tt---t
B D       Crab-eating macaque  tt---t
B D                    Baboon  tt---t
B D              Green monkey  tt---t
B D                  Bushbaby  ta---g
                 Prairie vole  tt---t
B D           Chinese hamster  tt---t
               Golden hamster  tt---c
B D                     Mouse  tt---t
B D                       Rat  tt---t
B D            Naked mole-rat  tt---t
B D                Guinea pig  ttgaat
                   Chinchilla  tt---t
             Brush-tailed rat  tt---t
B D                       Pig  tt---t
B D                    Alpaca  t-----
               Bactrian camel  t-----
B D                   Dolphin  tt---t
                 Killer whale  tt---t
             Tibetan antelope  tt---t
B D                       Cow  tt---t
B D                     Sheep  tt---t
                Domestic goat  tt---t
B D                     Horse  tt---t
B D          White rhinoceros  tt---t
B D                       Cat  tt---t
B D                       Dog  ct---t
B D                   Ferret   tt---t
B D                     Panda  tt---t
               Pacific walrus  tt---t
                 Weddell seal  tt---t
             Black flying-fox  -t---t
B D                   Megabat  -t---t
              Star-nosed mole  tt---t
B D                  Elephant  tc---t
B D                   Manatee  tt---t
B D                    Tenrec  ct---t
                     Aardvark  tt---t
B D                 Armadillo  tt---t
      Lesser Egyptian jerboa  ======
         Cape elephant shrew  ======
B D                  Hedgehog  ======
B D                     Shrew  ======
B D                      Pika  ------
B D                    Rabbit  ------
B D           Squirrel monkey  ======
        David's myotis (bat)  ------
B D                  Microbat  ------
               Big brown bat  ------
B D                  Marmoset  ======
          Chinese tree shrew  ------
B D                  Squirrel  ------
         Pundamilia nyererei  ======
                 Zebra mbuna  ======
       Burton's mouthbreeder  ======
B D                 Tetraodon  ======
         Princess of Burundi  ======
      Yellowbelly pufferfish  ======
B D                 Zebrafish  ======
B D                    Medaka  ======
B D             X. tropicalis  ======
B D                    Turkey  ======
B D                   Chicken  ======
  D             Scarlet macaw  ======
B D                Budgerigar  ======
          Tibetan ground jay  ======
  D          Peregrine falcon  ======
  D              Saker falcon  ======
  D               Rock pigeon  ======
B D               Stickleback  ======
B D       Medium ground finch  ======
B D                Coelacanth  ======
                 Spotted gar  ======
          Southern platyfish  ======
B D              Nile tilapia  ======
B D                      Fugu  ======
  D              Mallard duck  ======
            Cape golden mole  ======
  D  Chinese softshell turtle  ======
  D            Painted turtle  ======
  D           Green seaturtle  ======
B D           Tasmanian devil  ======
B D                    Lizard  ======
B D                  Platypus  ======
B D        American alligator  ======
B D               Zebra finch  ======
  D       Collared flycatcher  ======

Inserts between block 27 and 28 in window
                    Aardvark 19157bp

Alignment block 28 of 161 in window, 50313463 - 50313481, 19 bps 
B D                     Human  attatggt--ta-aaggg-tttt
B D                     Chimp  attatggt--ta-aaggg-tttt
B D                   Gorilla  attatggt--ta-aaggg-tttt
B D                 Orangutan  attatggt--ta-aaggg-tttt
B D                    Gibbon  attatggt--ta-aaggg-tttt
B D                    Rhesus  attatggt--ta-aaggg-tttt
B D       Crab-eating macaque  attatggt--ta-aaggg-tttt
B D                    Baboon  attatggt--ta-aaggg-tttt
B D              Green monkey  attatggt--ta-aaggg-tttt
B D                  Bushbaby  attacgtt--ta-aatgc-cttt
                 Prairie vole  attaggct--tg-aatgg-ttt-
B D           Chinese hamster  attatgct--tg-aatgg-ttt-
               Golden hamster  attatgtt--tg-aatgg-ttt-
B D                     Mouse  attatgct--tg-attga-ttg-
B D                       Rat  atcatttt--cg-attga-ttt-
B D            Naked mole-rat  attatgtt--ta-aatgt-tttt
B D                Guinea pig  t---------------gt-cttt
                   Chinchilla  t----------------------
             Brush-tailed rat  ttttt---------atgt-cttc
B D                    Rabbit  -------t--ta-gataa-ccc-
B D                      Pika  -------ttata-gataa-ccc-
B D                       Pig  gttatgtt--ta-aatgg-tttt
B D                    Alpaca  -ttatgtt--ta-aatgg--ttt
               Bactrian camel  -ttatgtt--ta-aatgg--ttt
B D                   Dolphin  attatgtt--ta-tattggtttt
                 Killer whale  attatgtt--ta-tattggtttt
             Tibetan antelope  attatgtt--ta-tatggttttt
B D                       Cow  attatgtt--ta-tatggttttt
B D                     Sheep  attatgtt--ta-tatggttttt
                Domestic goat  attatgtt--ta-tatggttttt
B D                     Horse  agtgtgtt--ta-aatgg-tttt
B D          White rhinoceros  gttatgtt--ta-aatgg-gttt
B D                       Cat  attatgtt--ca-aatgg-tttt
B D                       Dog  attatgtt--ta-aataa-tttt
B D                   Ferret   attatgtt--ta-aatga-tttt
B D                     Panda  agtatgtt--ta-aatga-tttt
               Pacific walrus  attatgta--ta-catga-ttgt
                 Weddell seal  attatgtt--ta-catga-ttat
             Black flying-fox  tatttgct--ca-aatga-tttt
B D                   Megabat  tatttgct--ca-aatga-tttt
                Big brown bat  ---acgct--cg-aacgg-tttt
         David's myotis (bat)  ---atgct--cg-aatgg-cttt
B D                  Microbat  ---atgct--cgaaatgg-cttt
              Star-nosed mole  attatgtt--ca-agtgg-tttt
B D                  Elephant  gtgttgtt--ta-aatgg-ttct
B D                   Manatee  atgatgtt--ta-aataa-ttct
B D                    Tenrec  atgatgtt--ta-aatga-ttct
B D                 Armadillo  attatctt--ta-aatga-ttt-
      Lesser Egyptian jerboa  =======================
         Cape elephant shrew  =======================
B D                  Hedgehog  =======================
B D                     Shrew  =======================
B D           Squirrel monkey  =======================
B D                  Marmoset  =======================
          Chinese tree shrew  -----------------------
B D                  Squirrel  -----------------------
         Pundamilia nyererei  =======================
                 Zebra mbuna  =======================
       Burton's mouthbreeder  =======================
B D                 Tetraodon  =======================
         Princess of Burundi  =======================
      Yellowbelly pufferfish  =======================
B D                 Zebrafish  =======================
B D                    Medaka  =======================
B D             X. tropicalis  =======================
B D                    Turkey  =======================
B D                   Chicken  =======================
  D             Scarlet macaw  =======================
B D                Budgerigar  =======================
          Tibetan ground jay  =======================
  D          Peregrine falcon  =======================
  D              Saker falcon  =======================
  D               Rock pigeon  =======================
B D               Stickleback  =======================
B D       Medium ground finch  =======================
B D                Coelacanth  =======================
                 Spotted gar  =======================
          Southern platyfish  =======================
B D              Nile tilapia  =======================
B D                      Fugu  =======================
  D              Mallard duck  =======================
                    Aardvark  =======================
            Cape golden mole  =======================
  D  Chinese softshell turtle  =======================
  D            Painted turtle  =======================
  D           Green seaturtle  =======================
B D           Tasmanian devil  =======================
B D                    Lizard  =======================
B D                  Platypus  =======================
B D        American alligator  =======================
B D               Zebra finch  =======================
  D       Collared flycatcher  =======================

Inserts between block 28 and 29 in window
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp

Alignment block 29 of 161 in window, 50313482 - 50313507, 26 bps 
B D                     Human  acc-----accagaacagtggtacatagtt-t
B D                     Chimp  acc-----accagaacagtggtacatagtt-t
B D                   Gorilla  acc-----accagaacagtggtacatagtt-t
B D                 Orangutan  acc-----accagaacagtggtacatagtt-t
B D                    Gibbon  acc-----accagaacagtggtacatagtt-t
B D                    Rhesus  act-----accagaacagtggtacatagtt-t
B D       Crab-eating macaque  act-----accagaacagtggtacatagtt-t
B D                    Baboon  act-----accagaacagtggtacatagtt-t
B D              Green monkey  act-----accagaacagtggtacatagtt-t
B D                  Bushbaby  acc-----g-cagaacaggagtacatacct-t
           Chinese tree shrew  acc-----gccaggacagtagtacatatct-t
                 Prairie vole  gtc-----tcatgagcagtactagatgttt-t
B D           Chinese hamster  atg-----atctgagcagtactagacattt-t
               Golden hamster  atg-----atatgaacagtactagacaatt-t
B D                     Mouse  att-----tcatgagtagtactacatgttt-t
B D                       Rat  att-----tcatgagcagtaccagatactt-t
B D            Naked mole-rat  acc-----acaatgacagtagtatgtattttt
B D                Guinea pig  act-----acaa--acactagtatgtatttct
                   Chinchilla  atc-----acaatgacagtagtctgtattttt
             Brush-tailed rat  acc-----gaaatgatagtaatatatattttt
B D                    Rabbit  gcagctgttcactaccaggacagcatattt-t
B D                      Pika  aga-----------------------attc-t
B D                       Pig  atc-----acctggacagttgtacatattt-t
B D                    Alpaca  atc-----acctggacagttgtacatattt-a
               Bactrian camel  atc-----acttggacagttgtacatattt-a
B D                   Dolphin  atc-----acctggacagttgtacatattt-t
                 Killer whale  atc-----acctggacagttgtacatattt-t
             Tibetan antelope  atc-----acctggataattatgcatattt-t
B D                       Cow  atc-----acctggatagttatgcatattt-t
B D                     Sheep  atc-----acttggatagttatgcatattt-t
                Domestic goat  atc-----acctggatagttatgcatattt-t
B D                     Horse  acc-----gcctggacagttgtccgtggtt-t
B D          White rhinoceros  acc-----tcctccacagttgtacatattt-t
B D                       Cat  acc-----tcctggacagttgaatgc------
B D                       Dog  act-----ttctagacagttgaata-------
B D                   Ferret   act-----tctgggacagttgacta-------
B D                     Panda  act-----tcgtggacagttgac---------
               Pacific walrus  act-----tcttggacagttgac---------
                 Weddell seal  act-----tcttggacagttgac---------
             Black flying-fox  acc-----tcctggatagttgtacattttt-c
B D                   Megabat  acc-----tcccggatagttgtacattttt-c
                Big brown bat  acc-----ttctggatagttgtacatgttt-t
         David's myotis (bat)  acc-----ttctggatagttgtacatgttc-t
B D                  Microbat  acc-----ttc-ggatagttgtacatgttc-t
              Star-nosed mole  act-----gcctggacaactgcagatactt-t
B D                  Elephant  aca-----gcctggagaactgtacaaattt-t
B D                   Manatee  aca-----ggctggacaattgtacaaattt-t
B D                    Tenrec  aca-----g-ctggaca---------------
                     Aardvark  aca-----gcctgtacagtt-tacaaattt-t
B D                 Armadillo  -at-----gcccagacagttgtgcgacttt-t
      Lesser Egyptian jerboa  ================================
         Cape elephant shrew  ================================
B D                  Hedgehog  ================================
B D                     Shrew  ================================
B D           Squirrel monkey  ================================
B D                  Marmoset  ================================
B D                  Squirrel  --------------------------------
         Pundamilia nyererei  ================================
                 Zebra mbuna  ================================
       Burton's mouthbreeder  ================================
B D                 Tetraodon  ================================
         Princess of Burundi  ================================
      Yellowbelly pufferfish  ================================
B D                 Zebrafish  ================================
B D                    Medaka  ================================
B D             X. tropicalis  ================================
B D                    Turkey  ================================
B D                   Chicken  ================================
  D             Scarlet macaw  ================================
B D                Budgerigar  ================================
          Tibetan ground jay  ================================
  D          Peregrine falcon  ================================
  D              Saker falcon  ================================
  D               Rock pigeon  ================================
B D               Stickleback  ================================
B D       Medium ground finch  ================================
B D                Coelacanth  ================================
                 Spotted gar  ================================
          Southern platyfish  ================================
B D              Nile tilapia  ================================
B D                      Fugu  ================================
  D              Mallard duck  ================================
            Cape golden mole  ================================
  D  Chinese softshell turtle  ================================
  D            Painted turtle  ================================
  D           Green seaturtle  ================================
B D           Tasmanian devil  ================================
B D                    Lizard  ================================
B D                  Platypus  ================================
B D        American alligator  ================================
B D               Zebra finch  ================================
  D       Collared flycatcher  ================================

Alignment block 30 of 161 in window, 50313508 - 50313519, 12 bps 
B D                     Human  gctt---ta--tt-------------tgtt
B D                     Chimp  gctt---ta--tt-------------tgtt
B D                   Gorilla  gctt---ta--tt-------------tgtt
B D                 Orangutan  gttt---ta--tt-------------tgtt
B D                    Gibbon  gctt---ta--tt-------------tgtt
B D                    Rhesus  gctt---ta--tt-------------tgtt
B D       Crab-eating macaque  gctt---ta--tt-------------tgtt
B D                    Baboon  gctt---ta--tt-------------tgtt
B D              Green monkey  gctt---ta--tt-------------tgtt
B D           Squirrel monkey  gctc---ta---t-------------tgtt
B D                  Bushbaby  gctt---ta--tt-------------tttg
           Chinese tree shrew  gctt---ta--at-------------tgtg
                 Prairie vole  gttt---ca--tt-------------ggtg
B D           Chinese hamster  gttt---ca--tt-------------ggtg
               Golden hamster  gttt---ca--tt-------------ggtg
B D                     Mouse  gttt---ca--tt-------------ggtg
B D                       Rat  gtct---ca--tt-------------ggcg
B D            Naked mole-rat  gctt---tacctg-------------tggg
B D                Guinea pig  gttttacta--tg-------------tggg
                   Chinchilla  gctt---ta--tc-------------tgtg
             Brush-tailed rat  gctt---ta--tg-------------gggg
B D                    Rabbit  gatt---tt--tt-------------ggtg
B D                      Pika  aatt---tg--cttccccctcccccaagtg
B D                       Pig  -ctt---ta--tt-------------tgtg
B D                    Alpaca  -cgt---ta--tt-------------tgtg
               Bactrian camel  -cct---ta--tt-------------tgtg
B D                   Dolphin  -ctt---ta--tt-------------tgcg
                 Killer whale  -ctt---ta--tt-------------tgcg
             Tibetan antelope  -ctt---ta--tt-------------tgtg
B D                       Cow  -ctt---ta--tt-------------tgtg
B D                     Sheep  -c---------tt-------------tgtg
                Domestic goat  -ctt---ta--tt-------------tgtg
B D                     Horse  gctt---ta--tg-------------tgtg
B D          White rhinoceros  gctt---ta--tt-------------tgtg
B D                       Cat  -ctt---tg--tt-------------tgtg
B D                       Dog  -ctt---ta--tt-------------tatg
B D                   Ferret   -ttt---ta--tt-------------tgtg
B D                     Panda  -------ta--tt-------------tgtg
               Pacific walrus  -------ta--tt-------------tgtg
                 Weddell seal  -------ta--tt-------------tgtg
             Black flying-fox  gctt---ta--at-------------tgtg
B D                   Megabat  actt---ta--at-------------tgtg
                Big brown bat  gctt---ta--tt-------------tgtg
         David's myotis (bat)  gctt---ta--tt-------------tgtg
B D                  Microbat  gctt---ta--tt-------------cgtg
              Star-nosed mole  gctt---ta-----------------tggg
B D                  Elephant  gctt---ta--tt-------------tgtg