Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 224 in window, 45120037 - 45120246, 210 bps 
B D                   Human  ggctggaagtccaagatcaaggtggcagtagatgtggtgtctggtagaggctgtctgggctgtcttcctg
B D                   Chimp  ggctggaagtccaagatcaaggtggcagtagatgtggtgtctggtagaggctgtctgggctgtcttcctg
B D                 Gorilla  ggctggaagtccaagatcaaggtggcagtagatgtggtgtctggtagaggctgtctgggctgtcttcctg
B D               Orangutan  ggctggaagtccaagatcaaggtggcagtagatatggtgtctggtaggggctgtctgggctgtcttcctg
B D                  Gibbon  ggctggaagtccacgatcaaggtggcagtagatatggtgtctggtaggggctgtctgggctgtcttcctg
B D     Crab-eating macaque  ggctggaaatccaagatcaagatggcagtagatatggtgtctggtaggagctgtctgggttgtcttcctg
B D                  Baboon  ggctggaaatccaagatcaagatggcagtagatatggtatctggtaggagctgtctgggctgtcttcctg
B D            Green monkey  ggctggaaatccaagatcaagatggtagtagatatggtgtctggtaggagctgtctgggctgtcttcctg
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                   Horse  ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                Bushbaby  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
B D                  Rhesus  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
B D                     Pig  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ======================================================================
B D                Marmoset  ======================================================================

                      Human  gtgtgcatgtgaccatcttcttgttgtattctcacatggccaagagcagagagagagctctctgtggtcc
                      Chimp  gtgtgcatgtgaccatcttcttgttgtattctcacatggccaagagcagagagagagctctctgtggtcc
                    Gorilla  gtgtgcatgtgaccatcttcttgttgtattctcacatggccaagagcagagagagagctctctgtggtcc
                  Orangutan  gtgtgcatgtgaccatcttcttattgtattctcacatggccaagagcagagagagagctctctgtggtcc
                     Gibbon  gtgtgcgtgtgaccatcttcttattgtattctcacatggccaagagcagagagagagctctctgtggtcc
        Crab-eating macaque  gtgtgcat-tggccatcttcttattgtattctc-----gccaagagcagagagagcactctctgcggtcc
                     Baboon  gtgtgcat-tggccatcttcttattgtattctc-----gccaagagcagagagagcactctctgcggtcc
               Green monkey  gtgtgcat-tggccatcttcttattgtattctc-----gccaagagcagagagagcactctctgcggtcc
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
                     Rhesus  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================
                   Marmoset  ======================================================================

                      Human  ctttccactcgtgagggctccactctcatgatctaattatcccccaaaggccccacctccgaatgttata
                      Chimp  ctttccactcgtgagggctccactctcatgatctaattatcccccaaaggccccacctccgaatgttata
                    Gorilla  ctttccactcgtgagggctccactctcatgatctaattatcccccaaaggccccacctccgaatgttata
                  Orangutan  ctttccactcgtgggggctccgctctcatgatctaattatcccccaaaggccccacctctgaatgttata
                     Gibbon  ctttccactcgtgagggctccactgtcatgatctaattatcccccaaaggccccacctctgaatgttata
        Crab-eating macaque  ctttccacttgtgagggctccactctcacgatctaatgatcccccaaaggctccacctctgaatgttata
                     Baboon  ctttccacttgtgagggctccactctcatgatctaattatcccccaaaggctccacctctgaatgttata
               Green monkey  ctttccattcatgagggctccagtcttatgatctaattatccccgaaaggctccacctctgaatgttata
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
                     Rhesus  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================
                   Marmoset  ======================================================================

Alignment block 2 of 224 in window, 45120247 - 45120447, 201 bps 
B D                   Human  ccttcacct---------------caccttagtggtgaagatttcaa----catatgaattttggaagag
B D                   Chimp  ccttcacct---------------caccttagtggtgaagatttcaa----catatgaattttggaagag
B D                 Gorilla  ccttcacct---------------caccttagtggtgaagatttcaa----catatgaattttggaagag
B D               Orangutan  ctttcacct---------------caccttaatggtgaatatttcaatattcatatgaattttagaagag
B D                  Gibbon  ccttcacct---------------caccttagtggtgaagatttcaa----catatgaattttggaagag
B D     Crab-eating macaque  ccttcacctcaggggtgaaatctgcagctaagtggtgaagatttcaa----c--atgaattttggaagag
B D                  Baboon  ccttcacctcaggggtgaaatctgcagctaagtggtgaagatttcaa----c--atgaattttggaagag
B D            Green monkey  ccttcacctcaggggtgaaatcgtcaccttagtggtgaagatttcaa----catatgaattttggaagaa
B D                Marmoset  ccttcacct---------------------------gaggatttcaa----caagtgaattttggaagag
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                   Horse  ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                Bushbaby  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
B D                  Rhesus  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
B D                     Pig  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ======================================================================

                      Human  gaaggatgaacattcagaccatgc-----aatgtaagtgtttatatttgtgtatgtttataagcatatga
                      Chimp  gaaggatgaacattcagaccatgc-----aatgtaagtgtttatatttgtgtatgtttataagcatatga
                    Gorilla  gaaggatgaacattcagaccatgc-----aatgtaagtgtttatatttgtgtatgtttataagcatatga
                  Orangutan  gaaggacgaacattcagaccatgc-----aatgtaagtgtttatatttgtgtatgtttataagcatatga
                     Gibbon  gaaggacaaacattcagaccatgt-----aatgtaagcatttatatttgtgtatgtttataagcatatga
        Crab-eating macaque  gaagaatgaacattcagaccatgc-----aatgtaagtgtttatatttgtg------tataaacatatga
                     Baboon  gaaggatgaacattcagaccatgc-----aatgtaagtgtttatatttgtg------tataaacatatga
               Green monkey  gaaggatgaacattcagactatgc-----aatgtaagtgtttatatttgtg------tataagcatatga
                   Marmoset  gacggatgaacattcagactgtgtgtgtagttggaaatgtgtacatttgtgtatgtttataagca-----
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
                     Rhesus  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================

                      Human  atataggcatgcata--tgcgtgtgtgtatgtgctgtatatatacaattcaaaagttttcttggtttgtt
                      Chimp  atataggcatgcata--tgtgtgtgtgtatgtactgtatatatacaattcaaaagttttcttggtttgtt
                    Gorilla  atataggcatgcata--tgtgtgtgtgtatgtactgtatatatacaattcaaaagttttcttggtttgtt
                  Orangutan  atacaggcatgtata--tgtgtgtgtgtatgtactgtatatatacaattcaaaagttttcttgatttgtt
                     Gibbon  atacaggcatgcata--tgtgtgtgtgtatgtactgtatatatacagttcaaaagttttcttggtttgtt
        Crab-eating macaque  atataggcatgcgtacatgtgtgtgtgtatgtactgtatatatacaattgaaaaattttcttgctttgtt
                     Baboon  atataggcatgcatacgtgtgtgtgtgtgtgtactgtatatatacaattcaaaaattttcttgctttgct
               Green monkey  atataggcatgcata--tgtgtgtgtgtatgtactgtatatatacaattcaaaaattttcttgctttgtt
                   Marmoset  -----------------tatgtgagtgtatgtactgtatatatacaattcaaaaattttcttggtttgtt
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
                     Rhesus  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================

                      Human  tgcttgctgaatccttt
                      Chimp  tgcttgctgaatccttt
                    Gorilla  tgcttgctgaatccttt
                  Orangutan  tgcttgctgaatccttt
                     Gibbon  tgcttgctgaatccttt
        Crab-eating macaque  tgcttgctgaatccttt
                     Baboon  tgcttgctgaatccttt
               Green monkey  tgcttgctgaatccttt
                   Marmoset  tccttgctgaacgcttt
                     Rabbit  =================
                       Pika  =================
                  Armadillo  =================
           White rhinoceros  =================
                      Panda  =================
               Prairie vole  =================
                        Rat  =================
                      Mouse  =================
            Chinese hamster  =================
     Lesser Egyptian jerboa  =================
              Domestic goat  =================
                        Cow  =================
                      Sheep  =================
           Tibetan antelope  =================
               Killer whale  =================
                     Alpaca  =================
            Star-nosed mole  =================
                    Ferret   =================
                      Horse  =================
                   Squirrel  =================
           Black flying-fox  =================
                        Cat  =================
                    Manatee  =================
                   Elephant  =================
             Bactrian camel  =================
                    Opossum  =================
                   Bushbaby  =================
                        Dog  =================
           Brush-tailed rat  =================
                     Rhesus  =================
         Chinese tree shrew  =================
                 Chinchilla  =================
                        Pig  =================
               Weddell seal  =================
                    Dolphin  =================
                    Megabat  =================
                 Guinea pig  =================
             Naked mole-rat  =================
            Squirrel monkey  =================

Alignment block 3 of 224 in window, 45120448 - 45120753, 306 bps 
B D                   Human  gaaagtgagctgtaggctggccggacacagcggttcacgcctgtaattccagcactttgggaggccgagg
B D                   Chimp  gaaagtgagctgtaggctggccggacacagcggttcatgcctgtaattccagcactttgggaggccgagg
B D                 Gorilla  gaaagtgagctgtaggctggccagacacagtggttcacgcctgtaattccagcactttgggaggccgagg
B D               Orangutan  gaaagtgagctgtaggctggccggacacagtggttcacgcctgtaattccagcactttgggaggccgagg
B D                  Gibbon  gaaagtgagctgtaggctggctgggcacagtggttcacgcctgtaattccagcactttgggaggccgagg
B D     Crab-eating macaque  gaaagtgagctgtaggctggctgggcacagtggctcatgcctgtaatcccagcactttgggaggctaagg
B D                  Baboon  gaaagtgagctgtaggctggctgggcacagtggctcatgcctgtaatcccagcactttgggaggctaagg
B D            Green monkey  gaaagtgagctgtaggctggctgggcacagtggctcacgcctgtaatcccagcactttgggaggctgagg
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                   Horse  ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                Bushbaby  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
B D                  Rhesus  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
B D                     Pig  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ======================================================================
B D                Marmoset  ----------------------------------------------------------------------

                      Human  caggaggatcacgaggtcagaagatcgagaccatcctggctaacacggtgaaaccctgcctctactaaaa
                      Chimp  caggcggatcacgaggtcagaagatcgagaccatcctggctaacacggtgaaaccctgcctctactaaaa
                    Gorilla  caggcggatcacgaggtcagaagatcgagaccatcctggccaacacggtgaaaccctgcccctactaaaa
                  Orangutan  caggcggatcacgaggtcagaagatcgagaccatcctggctaacatggtgaaaccccatctctactaaaa
                     Gibbon  caggcggatcattagatcagaagatgaagaccatcctggctaacacggtgaaaccccatctctactaaaa
        Crab-eating macaque  caggcggatcatgtagtcagaagattgagaccatcctggctaacatggtgaaacctcatctctactaaaa
                     Baboon  caggcggatcatgtagtcagaagattgagaccatcctggctaacatggtgaaaccccatctctactaaaa
               Green monkey  caggcggatcatgtagtcagaagattgagaccatcctggctaacatggtgaaaccctgtctctactaaaa
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
                     Rhesus  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================
                   Marmoset  ----------------------------------------------------------------------

                      Human  ttac--------aaacaaaaaaaattagctgggcatggtggtgcatgcctgtagtcccagctactcagga
                      Chimp  ttac--------aaacaaaaaaaattagctgggcatggtggtgcatgcctgtagtcccagctactcagga
                    Gorilla  ttacaaaaaaaaaaaaaaaaaaaattagctgggcatggtggtgcatgcctgtagtcccagctactcagga
                  Orangutan  ttac----aaaaaaaaaaaaaaaattagctgggcatggtggggcatgcctgtagtcccagctactcagga
                     Gibbon  ttac-aaaaaaaaaaaaaaaaaaattagctgggcatagtggtgcatgcctgtagtcccagctactcagga
        Crab-eating macaque  ttac----acacacacacacacaattagctgggcatggtggtgcatgcctgtagtcccagttactcagga
                     Baboon  ttac----acacacacacacaaaattagctgggcatggtggtgcatgcctgtagtcccagttactcagga
               Green monkey  ttac----acacacacacacaaaattagctgggcatggtggtgcaagcctgtagtcccagctactcagga
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
                     Rhesus  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================
                   Marmoset  ----------------------------------------------------------------------

                      Human  ggctgaggcaggagaattgcttgaacccaagaggcggaggttgcagtgagccaagatcgtgccactgcgc
                      Chimp  ggctgaggcaggagaattgcttgaacccaagagacggaggttgcagtgagccaagatcgtgccactgcgc
                    Gorilla  ggctgaggcaggagaattgcttgaacccaagaggtggaggttgcagtgagccaagattgtgccgctgcgc
                  Orangutan  ggttgaggcaggagaattgcttgaacccgagaggcggaggctgcagtgagccaagatcgtgccactgcgc
                     Gibbon  ggctgaggcaagagaatcacttgaacccaagaggtggaggttgcagtgagccaagatagtgccactgagc
        Crab-eating macaque  ggctgaggcaggagaatcgcttgaacccaagaggcggaggttgcagtgagctgagatcgtgccactgtgc
                     Baboon  ggctgaggcaggagaatcgcttgaacccaagaggcggaggttgcagtgagctgagatcgtgccactgtgc
               Green monkey  gattgaggcaggagaatcacttgaacccaagaggcagaggttgcagtttgctgagatcgtgccactgtgc
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
                     Rhesus  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================
                   Marmoset  ----------------------------------------------------------------------

                      Human  tgcagcctgggtgacagagggagactccatctca
                      Chimp  tgcagcctgggtgacagagggagactccatctca
                    Gorilla  tgcagcctgggtgacagagggagactccatctca
                  Orangutan  tgcagcctgggtgacagagggagactccatctca
                     Gibbon  tgcagcctgggcgacagagggagactccatctca
        Crab-eating macaque  tgcagcctgggcgacagagggaga----------
                     Baboon  tgcagcctgggcgacagagggaga----------
               Green monkey  tgtagcctgggcgacagagggaga----------
                     Rabbit  ==================================
                       Pika  ==================================
                  Armadillo  ==================================
           White rhinoceros  ==================================
                      Panda  ==================================
               Prairie vole  ==================================
                        Rat  ==================================
                      Mouse  ==================================
            Chinese hamster  ==================================
     Lesser Egyptian jerboa  ==================================
              Domestic goat  ==================================
                        Cow  ==================================
                      Sheep  ==================================
           Tibetan antelope  ==================================
               Killer whale  ==================================
                     Alpaca  ==================================
            Star-nosed mole  ==================================
                    Ferret   ==================================
                      Horse  ==================================
                   Squirrel  ==================================
           Black flying-fox  ==================================
                        Cat  ==================================
                    Manatee  ==================================
                   Elephant  ==================================
             Bactrian camel  ==================================
                    Opossum  ==================================
                   Bushbaby  ==================================
                        Dog  ==================================
           Brush-tailed rat  ==================================
                     Rhesus  ==================================
         Chinese tree shrew  ==================================
                 Chinchilla  ==================================
                        Pig  ==================================
               Weddell seal  ==================================
                    Dolphin  ==================================
                    Megabat  ==================================
                 Guinea pig  ==================================
             Naked mole-rat  ==================================
            Squirrel monkey  ==================================
                   Marmoset  ----------------------------------

Alignment block 4 of 224 in window, 45120754 - 45120778, 25 bps 
B D                   Human  aaaaaaaaaaaa---agaaagaaagaaa
B D                   Chimp  aaaaaaaaaaaa-----aaagaaagaaa
B D                 Gorilla  aaaaaaaaaaaaagaagaaagaaagaaa
B D               Orangutan  aaaaaaaaaaaa-aaaaaaagaaagaaa
B D                  Gibbon  aaaaaaaaagaa-------agaaagaaa
B D                  Rhesus  -aaaaaaaaaaa---aagaaaaaaaaaa
B D     Crab-eating macaque  --aaaaaaaaaa---aagaaaaaaaaaa
B D                  Baboon  ----aaaagaaa---aagaaaaaaaaaa
B D            Green monkey  -aaaaaaagaaa---gaaaaaaaaaaaa
B D                  Rabbit  ============================
B D                    Pika  ============================
B D               Armadillo  ============================
B D        White rhinoceros  ============================
B D                   Panda  ============================
              Prairie vole  ============================
B D                     Rat  ============================
B D                   Mouse  ============================
B D         Chinese hamster  ============================
    Lesser Egyptian jerboa  ============================
             Domestic goat  ============================
B D                     Cow  ============================
B D                   Sheep  ============================
          Tibetan antelope  ============================
              Killer whale  ============================
B D                  Alpaca  ============================
           Star-nosed mole  ============================
B D                 Ferret   ============================
B D                   Horse  ============================
B D                Squirrel  ============================
          Black flying-fox  ============================
B D                     Cat  ============================
B D                 Manatee  ============================
B D                Elephant  ============================
            Bactrian camel  ============================
B D                 Opossum  ============================
B D                Bushbaby  ============================
B D                     Dog  ============================
          Brush-tailed rat  ============================
        Chinese tree shrew  ============================
                Chinchilla  ============================
B D                     Pig  ============================
              Weddell seal  ============================
B D                 Dolphin  ============================
B D                 Megabat  ============================
B D              Guinea pig  ============================
B D          Naked mole-rat  ============================
B D         Squirrel monkey  ============================
B D                Marmoset  ----------------------------

Alignment block 5 of 224 in window, 45120779 - 45120956, 178 bps 
B D                   Human  gaaagtgagctgtagacatcacaaacttctcccttaagcactttagcagcaaacattgtccatgtgaccc
B D                   Chimp  gaaagtgagctgtagacatcacagacttctcccttaagcactttagcagcaaacattgtccatgtgaccc
B D                 Gorilla  gaaagtgagctgtagacatcacaaacttctcccttaagcactttagcagcaaacattgtccatgtgaccc
B D               Orangutan  gaaagtgagctgtaggcatcacaaacttctcccttaagcactttagcagcaaacattgtccatgtgaccc
B D                  Gibbon  gaaagtgagctgtaggcatcacaaacttctctcttaagcactttagcagcaaacattgttcatgtgaccc
B D                  Rhesus  gaaagtgaactgtaggcatcacaaacttctcccttaagcactttagcagcaaacattgtccatgtgactc
B D     Crab-eating macaque  gaaagtgaactgtaggcatcacaaacttctcccttaagcactttagcagcaaacattgtccatgtgactc
B D                  Baboon  gaaagtgaactgtaggcatcacaaacttctcccttaagcactttagcagcaaacattgtccatgtgactc
B D            Green monkey  gaaagtgaactgtaggcatcacaaacttttcccttaagcactttagcagcaaacattgtccatgtgactc
B D                Marmoset  gaaagtgagctgtaggcatcagaaacttctcccctaagcacttcagcagcaaacattgtccatgtgaccc
B D                Bushbaby  gaatgtgagttgcaggcatcacaaatttctcccctaagtccttcagcagcacaggttgtccatatgactt
B D        White rhinoceros  gaaagtgagttgcaggcatcacgaacttctc---taaataattcagcagtgcacattctctacatgaccc
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                   Horse  ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
B D                     Pig  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ======================================================================

                      Human  cactgtaattatcctactagggaaattaacattgatgcaataaggccatctgat-tcaggtccatatccg
                      Chimp  cactgtaattatcctactagggaaattaacattgatccaataaggccatctgat-tcaggtccatatccg
                    Gorilla  cactgtaattatcctactagagaaattaacattgatccaataaggccatctgat-tcaggtccacatccg
                  Orangutan  caatgtaattatcctactaaggaaattaacattgatccaataaagccatctgat-tcaggtccatattcg
                     Gibbon  caatataattatcctactagggaaattaacattgatccaataaggccatctgat-tcaggtccatattcg
                     Rhesus  tgatataattatcctactaaggaggttaacactgatccaataaggccatctaat-tcaggtctatattcg
        Crab-eating macaque  tgatataattatcctactaaggaggttaacactgatccaataaggccatctaat-tcaggtctatattcg
                     Baboon  tgacataattatcctactaaggaggttaacactgatccaataaggccatctaat-tcaggtctatattcg
               Green monkey  caatataattatcctactaaggaggttaacactgattcaataaggccatctaat-tcaggtctatattcg
                   Marmoset  caatataattatcctactaaggaaatgaatgttgatccaataaggccatccaatgtcaggtccatattcc
                   Bushbaby  caat---atcatgctaccaaagaaattaacattgactcaataaggctgttcaatgtctgatccatattca
           White rhinoceros  caatatctttattgcactaagaaaattaacattgattcaatcagatcaactaatgtctggtccacacttg
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================

                      Human  aatgtccccaattgacctttgtctccttaa-tctctatga
                      Chimp  aatgtccccaattgacctttgtctccttaa-tctctatga
                    Gorilla  aatgtccccaattgacctttgtctccttaa-tctctatga
                  Orangutan  aatgtccccagttgacctttgtttccttaa-tctctatga
                     Gibbon  aatgtccccagttgacctttgtctccttaa-tctctatga
                     Rhesus  aatgtccccagttgacctttgtctccttaa-tctctgtga
        Crab-eating macaque  aatgtccccagttgacctttgtctccttaa-tctctgcga
                     Baboon  aatgtccccagttgacctttgtctccttaa-tctctgtga
               Green monkey  aatgtccccagttgacctttgtctccttaa-tctctgtga
                   Marmoset  aatatccccagttgacctttgtctccttca-tctctgtga
                   Bushbaby  aatgtcgccagcttacc-ctgtctccttaagtctctgtta
           White rhinoceros  aatttctgcagctgtctcttgtctccttag-tatctgttt
                     Rabbit  ========================================
                       Pika  ========================================
                  Armadillo  ========================================
                      Panda  ========================================
               Prairie vole  ========================================
                        Rat  ========================================
                      Mouse  ========================================
            Chinese hamster  ========================================
     Lesser Egyptian jerboa  ========================================
              Domestic goat  ========================================
                        Cow  ========================================
                      Sheep  ========================================
           Tibetan antelope  ========================================
               Killer whale  ========================================
                     Alpaca  ========================================
            Star-nosed mole  ========================================
                    Ferret   ========================================
                      Horse  ========================================
                   Squirrel  ========================================
           Black flying-fox  ========================================
                        Cat  ========================================
                    Manatee  ========================================
                   Elephant  ========================================
             Bactrian camel  ========================================
                    Opossum  ========================================
                        Dog  ========================================
           Brush-tailed rat  ========================================
         Chinese tree shrew  ========================================
                 Chinchilla  ========================================
                        Pig  ========================================
               Weddell seal  ========================================
                    Dolphin  ========================================
                    Megabat  ========================================
                 Guinea pig  ========================================
             Naked mole-rat  ========================================
            Squirrel monkey  ========================================

Inserts between block 5 and 6 in window
B D              Orangutan 7bp
B D                 Gibbon 7bp
B D                 Rhesus 50bp
B D    Crab-eating macaque 10bp
B D                 Baboon 30bp
B D           Green monkey 47bp
B D               Marmoset 28bp
B D               Bushbaby 1bp

Alignment block 6 of 224 in window, 45120957 - 45120978, 22 bps 
B D                   Human  ttgttgt----------tgttgttatttgttt
B D                   Chimp  ttgttgt----------tgttgtta----ttt
B D                 Gorilla  ttgttgt----------tgttattt---gttt
B D               Orangutan  ttgttgt----------tgttgttatttgttt
B D                  Gibbon  ttcttgt----------tgttgttatttgttt
B D     Crab-eating macaque  tttttgtctaacatcacttttgttttttggtt
B D                  Baboon  ttttttt----------tttttttttttgatt
B D            Green monkey  tttttgt----------ggttgttatttgttt
B D                Marmoset  ttattgt----------tgttgttgtt-----
B D                Bushbaby  tcttcct----------ttttatt--------
B D        White rhinoceros  cttctcc----------tcctgctcctcgtcc
B D                  Rabbit  ================================
B D                    Pika  ================================
B D               Armadillo  ================================
B D                   Panda  ================================
              Prairie vole  ================================
B D                     Rat  ================================
B D                   Mouse  ================================
B D         Chinese hamster  ================================
    Lesser Egyptian jerboa  ================================
             Domestic goat  ================================
B D                     Cow  ================================
B D                   Sheep  ================================
          Tibetan antelope  ================================
              Killer whale  ================================
B D                  Alpaca  ================================
           Star-nosed mole  ================================
B D                 Ferret   ================================
B D                   Horse  ================================
B D                Squirrel  ================================
          Black flying-fox  ================================
B D                     Cat  ================================
B D                 Manatee  ================================
B D                Elephant  ================================
            Bactrian camel  ================================
B D                 Opossum  ================================
B D                     Dog  ================================
          Brush-tailed rat  ================================
B D                  Rhesus  ================================
        Chinese tree shrew  ================================
                Chinchilla  ================================
B D                     Pig  ================================
              Weddell seal  ================================
B D                 Dolphin  ================================
B D                 Megabat  ================================
B D              Guinea pig  ================================
B D          Naked mole-rat  ================================
B D         Squirrel monkey  ================================

Inserts between block 6 and 7 in window
B D    Crab-eating macaque 6bp
B D                 Baboon 6bp

Alignment block 7 of 224 in window, 45120979 - 45120991, 13 bps 
B D                   Human  --gtttgtttttgag
B D                   Chimp  --gtttgtttttgag
B D                 Gorilla  --gtttgtttttgag
B D               Orangutan  --gtttgtttttgag
B D                  Gibbon  --gtttgtttttgag
B D                  Rhesus  --atttgtttctgag
B D     Crab-eating macaque  --atttgtttctgag
B D                  Baboon  --atttgtttctgag
B D            Green monkey  --gtttgtttttgag
B D                Marmoset  --atttgtttttgaa
B D                Bushbaby  --gtatagcattgag
B D        White rhinoceros  tcctcctcctctg--
B D                  Rabbit  ===============
B D                    Pika  ===============
B D               Armadillo  ===============
B D                   Panda  ===============
              Prairie vole  ===============
B D                     Rat  ===============
B D                   Mouse  ===============
B D         Chinese hamster  ===============
    Lesser Egyptian jerboa  ===============
             Domestic goat  ===============
B D                     Cow  ===============
B D                   Sheep  ===============
          Tibetan antelope  ===============
              Killer whale  ===============
B D                  Alpaca  ===============
           Star-nosed mole  ===============
B D                 Ferret   ===============
B D                   Horse  ===============
B D                Squirrel  ===============
          Black flying-fox  ===============
B D                     Cat  ===============
B D                 Manatee  ===============
B D                Elephant  ===============
            Bactrian camel  ===============
B D                 Opossum  ===============
B D                     Dog  ===============
          Brush-tailed rat  ===============
        Chinese tree shrew  ===============
                Chinchilla  ===============
B D                     Pig  ===============
              Weddell seal  ===============
B D                 Dolphin  ===============
B D                 Megabat  ===============
B D              Guinea pig  ===============
B D          Naked mole-rat  ===============
B D         Squirrel monkey  ===============

Inserts between block 7 and 8 in window
B D               Bushbaby 346bp

Alignment block 8 of 224 in window, 45120992 - 45120994, 3 bps 
B D                   Human  -aca
B D                   Chimp  -aca
B D                 Gorilla  -aca
B D               Orangutan  -aca
B D                  Gibbon  -aca
B D                  Rhesus  -aca
B D     Crab-eating macaque  -aca
B D                  Baboon  -aca
B D            Green monkey  -aca
B D                Marmoset  -ata
B D        White rhinoceros  ccc-
B D                  Rabbit  ====
B D                    Pika  ====
B D               Armadillo  ====
B D                   Panda  ====
              Prairie vole  ====
B D                     Rat  ====
B D                   Mouse  ====
B D         Chinese hamster  ====
    Lesser Egyptian jerboa  ====
             Domestic goat  ====
B D                     Cow  ====
B D                   Sheep  ====
          Tibetan antelope  ====
              Killer whale  ====
B D                  Alpaca  ====
           Star-nosed mole  ====
B D                 Ferret   ====
B D                   Horse  ====
B D                Squirrel  ====
          Black flying-fox  ====
B D                     Cat  ====
B D                 Manatee  ====
B D                Elephant  ====
            Bactrian camel  ====
B D                 Opossum  ====
B D                Bushbaby  ====
B D                     Dog  ====
          Brush-tailed rat  ====
        Chinese tree shrew  ====
                Chinchilla  ====
B D                     Pig  ====
              Weddell seal  ====
B D                 Dolphin  ====
B D                 Megabat  ====
B D              Guinea pig  ====
B D          Naked mole-rat  ====
B D         Squirrel monkey  ====

Inserts between block 8 and 9 in window
B D       White rhinoceros 376bp

Alignment block 9 of 224 in window, 45120995 - 45121244, 250 bps 
B D                   Human  gggtcttgtttggtagcccaggctgagtgcagtggtgcaaacacagctcactgcagccttgacctcctgg
B D                   Chimp  gggtcttgtttggtagcccaggctgagtgcagtggtgcaaacacagctcactgcagccttgaactcctgg
B D                 Gorilla  gggtcttgtttggtagcccaggctgagtgcagtggtgcaaacacagctcactgcagccttgacctcctgg
B D               Orangutan  gggtcttgtttggtagcccaggctgagtgcagtggtgcaaacacagctcactgcagccttcacctcctgg
B D                  Gibbon  gggtctcgcttggtagcccaggctgagtgcagtggtgcaaacacagctcactgcagccttgacctcctgg
B D                  Rhesus  gggtctcgcttggtagcccaggctgagtgcagtggtgcaaacacagttcaccgcagccttgacctcctgg
B D     Crab-eating macaque  gggtctcgcttggtagcccaggctgagtgcagtggtgcaaacacagttcaccgcagccttgacctcctgg
B D                  Baboon  gggtctcgcttggtagcccaggctgagtgcagtggtgcaaacacagttcactgcagccttgacctcctgg
B D            Green monkey  gggtcttgcttggtagcccaggctgagtgcagtggtgtaaacacagctcaccgcagccttgacctcctgg
B D                Marmoset  gggtcttgctcggtagcccaggctgagtgtaatgcagcaaacacagctcactgcagccttgaccgcctgg
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                   Horse  ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                Bushbaby  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
B D                     Pig  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ======================================================================

                      Human  gctcaagctatcctcccacatcagcccccccaggtagctgggtccacaggcatgcaccaccacacctggc
                      Chimp  gctcaagctatcctcccacctcagcccccccaggtagctgggtccacgggcatgcaccaccacacctggc
                    Gorilla  gctcaagctatcctcccacctcagcccccccaggtagctgggtccacaggcatgcaccaccacacctggc
                  Orangutan  gctcaagctatcctcccacctcagcccccccaggtagctgggtccacaggcatgcaccatcacacctggc
                     Gibbon  gctcaagctatcctcccacctcagcccccccaggtagctgggtccaca-gcacgcaccaccacacctggc
                     Rhesus  gctcaagttatcctcccacttcagccccctcaggtagctgggtccacaggcatgcaccaccacacgtggc
        Crab-eating macaque  gctcaagttatcctcccacttcagccccctcaggtagctgggtccacaggcatgcaccaccatacgtggc
                     Baboon  gctcaagttatcctcccacttcagccccctcaggtagctgggtccataggcatgcaccaccacacatggc
               Green monkey  gctcaagttagcctcccacttcagccccctcaggtagctgggtccacaggcatgcaccaccacacgtggc
                   Marmoset  gctgaagaaatcgttccacgtcagccccc-caggtagctgggcccacaggcatgcaccaccacacctggc
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================

                      Human  taatttttgtatttttgatagagatgggttttgccatgttgccaagactggtctcaaactcctgagctcg
                      Chimp  taatttttgtatttttgatagagatgggttttgccatgttgccaagactggtctcaaactcctgagctcg
                    Gorilla  taatttttgtatttttgatagagatgggttttgccatgttgccaagactggtttcaaactcctgagctcg
                  Orangutan  taatttttgtatttttgatagagatgggttttgccacgttgccaagactggtctcaaactcctgagctca
                     Gibbon  taatttttgtatttttgatagagatgggttttgccatgttgccaagactggtctcaaactcctgagctca
                     Rhesus  taattttaatatttttgatagagatgggttttgccatgttgccaagactggtctaaagctcctgagctca
        Crab-eating macaque  taattttaatatttttgatagagatgggttttgccatgttgccaagactggtctcaaactcctgagctca
                     Baboon  taattttaatatttttgatagagatgggttttgccatgttgccaagactggtctcaaactcctgagctca
               Green monkey  taattttactatatttgatagagatgggttttgccatgctgccaagactggtctcaaactcctgagctca
                   Marmoset  taatttctgtacatttggtagagatggcttttgccatgttgccaacgctggtctcaaactcctgagctca
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================

                      Human  agggctgcctcagcccccaaaagtgctaggattacaggtg
                      Chimp  aggcctgcctcagcccccaaaagtgctaggattacaggtg
                    Gorilla  aggcctgcctcagcccccaaaagtgctaggattacgggtg
                  Orangutan  aggcctgcctcagcctccaaaagtgctaggattacaggtg
                     Gibbon  aggcctgcctcagcctccaaaagtgttaagattacaggtg
                     Rhesus  agccctgcctcagcctccccaagtgctaggattgcaggtg
        Crab-eating macaque  agccctgcctcagcctccccaagtgctaggattgcaggtg
                     Baboon  agccctgcctcagcctcccaaagtgctaggattacaggtg
               Green monkey  agccctgcctcagcctcccaaagttctaggattacaggtg
                   Marmoset  aggcctgccctagcttccaaacgtgctgggattacaggtg
                     Rabbit  ========================================
                       Pika  ========================================
                  Armadillo  ========================================
           White rhinoceros  ========================================
                      Panda  ========================================
               Prairie vole  ========================================
                        Rat  ========================================
                      Mouse  ========================================
            Chinese hamster  ========================================
     Lesser Egyptian jerboa  ========================================
              Domestic goat  ========================================
                        Cow  ========================================
                      Sheep  ========================================
           Tibetan antelope  ========================================
               Killer whale  ========================================
                     Alpaca  ========================================
            Star-nosed mole  ========================================
                    Ferret   ========================================
                      Horse  ========================================
                   Squirrel  ========================================
           Black flying-fox  ========================================
                        Cat  ========================================
                    Manatee  ========================================
                   Elephant  ========================================
             Bactrian camel  ========================================
                    Opossum  ========================================
                   Bushbaby  ========================================
                        Dog  ========================================
           Brush-tailed rat  ========================================
         Chinese tree shrew  ========================================
                 Chinchilla  ========================================
                        Pig  ========================================
               Weddell seal  ========================================
                    Dolphin  ========================================
                    Megabat  ========================================
                 Guinea pig  ========================================
             Naked mole-rat  ========================================
            Squirrel monkey  ========================================

Alignment block 10 of 224 in window, 45121245 - 45121271, 27 bps 
B D                   Human  tgagccaccgtgcctggcctattttta
B D                   Chimp  tgagccgccgtgcctggcctattttta
B D                 Gorilla  tgagccaccgtgcctggcctattttta
B D               Orangutan  tgagccaccgtgcctggcctattttta
B D                  Gibbon  tgagccaccgtgcctggcctattttaa
B D                  Rhesus  tgagccagcatgtctggcctattttta
B D     Crab-eating macaque  tgagccagcatgtctggcctattttta
B D                  Baboon  tgagccagcatgtctggcctattttta
B D            Green monkey  tgagccagcgtgtctggcctatttttg
B D                Marmoset  tgaaccaccatgcctgccctatttaaa
B D        White rhinoceros  tgactatccttgcctggattaattatt
B D                  Rabbit  ===========================
B D                    Pika  ===========================
B D               Armadillo  ===========================
B D                   Panda  ===========================
              Prairie vole  ===========================
B D                     Rat  ===========================
B D                   Mouse  ===========================
B D         Chinese hamster  ===========================
    Lesser Egyptian jerboa  ===========================
             Domestic goat  ===========================
B D                     Cow  ===========================
B D                   Sheep  ===========================
          Tibetan antelope  ===========================
              Killer whale  ===========================
B D                  Alpaca  ===========================
           Star-nosed mole  ===========================
B D                 Ferret   ===========================
B D                   Horse  ===========================
B D                Squirrel  ===========================
          Black flying-fox  ===========================
B D                     Cat  ===========================
B D                 Manatee  ===========================
B D                Elephant  ===========================
            Bactrian camel  ===========================
B D                 Opossum  ===========================
B D                Bushbaby  ===========================
B D                     Dog  ===========================
          Brush-tailed rat  ===========================
        Chinese tree shrew  ===========================
                Chinchilla  ===========================
B D                     Pig  ===========================
              Weddell seal  ===========================
B D                 Dolphin  ===========================
B D                 Megabat  ===========================
B D              Guinea pig  ===========================
B D          Naked mole-rat  ===========================
B D         Squirrel monkey  ===========================

Alignment block 11 of 224 in window, 45121272 - 45121409, 138 bps 
B D                   Human  ------atttttttcacatgta------agccttcct--------g----cac---cacatttcttccat
B D                   Chimp  ------atttttttcacatgta------agccttcct--------g----cac---cacatttcttccat
B D                 Gorilla  ------atttttttcacatgta------agccttcct--------g----cac---cacatttcttccat
B D               Orangutan  ------atttttttcacatgta------agccttcct--------g----cac---catatttcttccat
B D                  Gibbon  ------atttttttcacatgta------agccttcct--------g----cac---cacctttcttccat
B D                  Rhesus  ------atttttttcacatgta------agccttcct--------g----cac---tacctttcttccat
B D     Crab-eating macaque  ------atttttttcacatgta------agccttcct--------g----cac---tacctttcttccat
B D                  Baboon  ------atttttttcacatgta------agccttcct--------g----cac---tacctttcttccat
B D            Green monkey  ------atttttttcacatgta------agccttcct--------g----cac---tacctttcttccat
B D                Marmoset  ------aaattttccccatgtg------agccttcca--------t----cac---cacctttcttccat
B D                Bushbaby  ------attccttccctatgtattgactagcacttttatgaagaag----cactttctccttttttccat
B D        White rhinoceros  actttgggtgttgcaaaatggt------ggtttttct--------aaccccgc---tgcctcttctctgt
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                   Horse  ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
B D                     Pig  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ======================================================================

                      Human  gtcttag-tatcactctcaactctggggtttttagaaattcagcgtgctgtactc----------tgtcc
                      Chimp  gtcttag-tatcactctcaactctggggcttttagaaattcagcgtgctgtactc----------tgtcc
                    Gorilla  gtcttag-tatcactctcaactctggggtttttagaaattcagcgtgctgtactc----------tgtcc
                  Orangutan  gtcttag-tattactctcaactctggggtttttagaaattcagtgtgctgtactc----------tgtcc
                     Gibbon  gtcttaa-tatcactctcaactctggggtttttagaaattcagcgtgctgtactc----------tgtcc
                     Rhesus  gtctcaa-tatcactctcaactccagggtttttagaaattcagcatgctgtactc----------tgtcc
        Crab-eating macaque  gtctcaa-tatcactctcaactccagggtttttagaaattcagcatgctgtactc----------tgtcc
                     Baboon  gtctcaa-tatcactgtcaactccagggtttttagaaattcagcatgctgtactc----------tgtcc
               Green monkey  gtcttaa-tatcactctcaactccagggtttttagaaattcagcgtgctgtactc----------tgtcc
                   Marmoset  gtcttaa-tatcactcttgactccggggttttcacaaattcagcgtgctgtactc----------tctcc
                   Bushbaby  ttcttaa-tatccctctcaactcttgagtctt-------------tgttataatc----------cattc
           White rhinoceros  gtagtgactagcacttcc----------tgtggagaagagctgtccctttttctccactgaaacatgtta
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================

                      Human  tcgtcagtaccctcacggcgctcatgtgtggcaggc
                      Chimp  tcgtcagtaccctcacggcgctcatgtgtggcaggc
                    Gorilla  ttgtcagtaccctcacggcgctcatgtgtggcaggc
                  Orangutan  tcgtcagtaccctcacggcgctcatgtgtggcaggc
                     Gibbon  tcgtcagtaccctcacggcgctcatgtgtggcaggc
                     Rhesus  tcgtca-taccctcatggcgctcatgtgtggcaggc
        Crab-eating macaque  tcgtca-taccctcatggcgctcatgtgtggcaggc
                     Baboon  tcgtca-taccctcatggcgctcatgtgtggcaggc
               Green monkey  ttgtca-taccctcacggagctcatgtgtggcaggc
                   Marmoset  tcatcagcaccttcatggcattcgtgcatggccggc
                   Bushbaby  ttgtcagtaccctcatggtgcttggggctggcttgc
           White rhinoceros  ctgttggtcccctgctggtgctcgagtttggctggc
                     Rabbit  ====================================
                       Pika  ====================================
                  Armadillo  ====================================
                      Panda  ====================================
               Prairie vole  ====================================
                        Rat  ====================================
                      Mouse  ====================================
            Chinese hamster  ====================================
     Lesser Egyptian jerboa  ====================================
              Domestic goat  ====================================
                        Cow  ====================================
                      Sheep  ====================================
           Tibetan antelope  ====================================
               Killer whale  ====================================
                     Alpaca  ====================================
            Star-nosed mole  ====================================
                    Ferret   ====================================
                      Horse  ====================================
                   Squirrel  ====================================
           Black flying-fox  ====================================
                        Cat  ====================================
                    Manatee  ====================================
                   Elephant  ====================================
             Bactrian camel  ====================================
                    Opossum  ====================================
                        Dog  ====================================
           Brush-tailed rat  ====================================
         Chinese tree shrew  ====================================
                 Chinchilla  ====================================
                        Pig  ====================================
               Weddell seal  ====================================
                    Dolphin  ====================================
                    Megabat  ====================================
                 Guinea pig  ====================================
             Naked mole-rat  ====================================
            Squirrel monkey  ====================================

Inserts between block 11 and 12 in window
B D       White rhinoceros 26bp

Alignment block 12 of 224 in window, 45121410 - 45121443, 34 bps 
B D                   Human  tcatgtgtccctccagcagatcatcattggtcag
B D                   Chimp  tcatgtgtccctccagcagatcatcattggtcag
B D                 Gorilla  tcacgtgtccctccagcagatcatcattggtcag
B D               Orangutan  tcacgtgtccctccagcagatcatcattggtcag
B D                  Gibbon  tcccgtgtccctccagcagatcaccattggtcag
B D                  Rhesus  tcccgtgtccctccagcagattatcattggtcag
B D     Crab-eating macaque  tcccgtgtccctccagcagattatcattggtcag
B D                  Baboon  tcccgtgtccctccagcagattatcattggtcag
B D            Green monkey  tcctgtgtccctccagcagattatcactggtcag
B D                Marmoset  tcccatgtccctccagcagatcaccattggtcag
B D                Bushbaby  tcctgtgtccctttggtaagtcaccaccagtctg
B D                  Rabbit  ==================================
B D                    Pika  ==================================
B D               Armadillo  ==================================
B D        White rhinoceros  ==================================
B D                   Panda  ==================================
              Prairie vole  ==================================
B D                     Rat  ==================================
B D                   Mouse  ==================================
B D         Chinese hamster  ==================================
    Lesser Egyptian jerboa  ==================================
             Domestic goat  ==================================
B D                     Cow  ==================================
B D                   Sheep  ==================================
          Tibetan antelope  ==================================
              Killer whale  ==================================
B D                  Alpaca  ==================================
           Star-nosed mole  ==================================
B D                 Ferret   ==================================
B D                   Horse  ==================================
B D                Squirrel  ==================================
          Black flying-fox  ==================================
B D                     Cat  ==================================
B D                 Manatee  ==================================
B D                Elephant  ==================================
            Bactrian camel  ==================================
B D                 Opossum  ==================================
B D                     Dog  ==================================
          Brush-tailed rat  ==================================
        Chinese tree shrew  ==================================
                Chinchilla  ==================================
B D                     Pig  ==================================
              Weddell seal  ==================================
B D                 Dolphin  ==================================
B D                 Megabat  ==================================
B D              Guinea pig  ==================================
B D          Naked mole-rat  ==================================
B D         Squirrel monkey  ==================================

Alignment block 13 of 224 in window, 45121444 - 45121446, 3 bps 
B D                   Human  gc---g
B D                   Chimp  gc---g
B D                 Gorilla  gc---g
B D               Orangutan  gc---g
B D                  Gibbon  gc---g
B D                  Rhesus  gc---g
B D     Crab-eating macaque  gc---g
B D                  Baboon  gc---g
B D            Green monkey  gc---g
B D                Marmoset  gt---g
B D                Bushbaby  acactg
B D        White rhinoceros  --tct-
B D                  Rabbit  ======
B D                    Pika  ======
B D               Armadillo  ======
B D                   Panda  ======
              Prairie vole  ======
B D                     Rat  ======
B D                   Mouse  ======
B D         Chinese hamster  ======
    Lesser Egyptian jerboa  ======
             Domestic goat  ======
B D                     Cow  ======
B D                   Sheep  ======
          Tibetan antelope  ======
              Killer whale  ======
B D                  Alpaca  ======
           Star-nosed mole  ======
B D                 Ferret   ======
B D                   Horse  ======
B D                Squirrel  ======
          Black flying-fox  ======
B D                     Cat  ======
B D                 Manatee  ======
B D                Elephant  ======
            Bactrian camel  ======
B D                 Opossum  ======
B D                     Dog  ======
          Brush-tailed rat  ======
        Chinese tree shrew  ======
                Chinchilla  ======
B D                     Pig  ======
              Weddell seal  ======
B D                 Dolphin  ======
B D                 Megabat  ======
B D              Guinea pig  ======
B D          Naked mole-rat  ======
B D         Squirrel monkey  ======

Alignment block 14 of 224 in window, 45121447 - 45121450, 4 bps 
B D                   Human  gacg
B D                   Chimp  gacg
B D                 Gorilla  gacg
B D               Orangutan  gacg
B D                  Gibbon  gatg
B D                  Rhesus  gatg
B D     Crab-eating macaque  gatg
B D                  Baboon  gatg
B D            Green monkey  gatg
B D                Marmoset  gatg
B D                Bushbaby  gatg
B D                     Pig  gatg
B D        White rhinoceros  gaca
B D                  Rabbit  ====
B D                    Pika  ====
B D               Armadillo  ====
B D                   Panda  ====
              Prairie vole  ====
B D                     Rat  ====
B D                   Mouse  ====
B D         Chinese hamster  ====
    Lesser Egyptian jerboa  ====
             Domestic goat  ====
B D                     Cow  ====
B D                   Sheep  ====
          Tibetan antelope  ====
              Killer whale  ====
B D                  Alpaca  ====
           Star-nosed mole  ====
B D                 Ferret   ====
B D                   Horse  ====
B D                Squirrel  ====
          Black flying-fox  ====
B D                     Cat  ====
B D                 Manatee  ====
B D                Elephant  ====
            Bactrian camel  ====
B D                 Opossum  ====
B D                     Dog  ====
          Brush-tailed rat  ====
        Chinese tree shrew  ====
                Chinchilla  ====
              Weddell seal  ====
B D                 Dolphin  ====
B D                 Megabat  ====
B D              Guinea pig  ====
B D          Naked mole-rat  ====
B D         Squirrel monkey  ====

Inserts between block 14 and 15 in window
B D       White rhinoceros 8bp

Alignment block 15 of 224 in window, 45121451 - 45121460, 10 bps 
B D                   Human  ccagcactc-c
B D                   Chimp  ccagcactc-c
B D                 Gorilla  ccagcactc-c
B D               Orangutan  ccagcactc-c
B D                  Gibbon  ccagcactc-c
B D                  Rhesus  ccagcactc-c
B D     Crab-eating macaque  ccagcactc-c
B D                  Baboon  ccagcactc-c
B D            Green monkey  ccagcactc-c
B D                Marmoset  ccagcact--c
B D                Bushbaby  caaacactc-c
B D                     Pig  cccacactag-
B D                   Horse  cccacactc--
B D        White rhinoceros  cccatgctc--
B D                  Rabbit  ===========
B D                    Pika  ===========
B D               Armadillo  ===========
B D                   Panda  ===========
              Prairie vole  ===========
B D                     Rat  ===========
B D                   Mouse  ===========
B D         Chinese hamster  ===========
    Lesser Egyptian jerboa  ===========
             Domestic goat  ===========
B D                     Cow  ===========
B D                   Sheep  ===========
          Tibetan antelope  ===========
              Killer whale  ===========
B D                  Alpaca  ===========
           Star-nosed mole  ===========
B D                 Ferret   ===========
B D                Squirrel  ===========
          Black flying-fox  ===========
B D                     Cat  ===========
B D                 Manatee  ===========
B D                Elephant  ===========
            Bactrian camel  ===========
B D                 Opossum  ===========
B D                     Dog  ===========
          Brush-tailed rat  ===========
        Chinese tree shrew  ===========
                Chinchilla  ===========
              Weddell seal  ===========
B D                 Dolphin  ===========
B D                 Megabat  ===========
B D              Guinea pig  ===========
B D          Naked mole-rat  ===========
B D         Squirrel monkey  ===========

Alignment block 16 of 224 in window, 45121461 - 45121609, 149 bps 
B D                   Human  ccttgtgccttctttg-cccatctatttctccaaggaatcctgctgcctttcagtggaggattgttcatg
B D                   Chimp  ccttgtgccttctttg-cccatctatttctccaaggaatcctgctgcctttcagtggaggattgttcacg
B D                 Gorilla  ccttgtgccttctttg-cccatctatttctccaaggaatcctgctgcctttcagtggaggattgttaacg
B D               Orangutan  ccttgtgccttctttg-cccatctatttctccaaggaatcctgctgcctttcagtggaggattgttcacg
B D                  Gibbon  ccttgtgccttctttg-cccatctatttctccaaggaatcctgctgcctttcagtggaggattgttcatg
B D                  Rhesus  ccttgttccctctttg-cccatctatttctccaaggaatcctgctgcctttcagtggaggattgttcacg
B D     Crab-eating macaque  ccttgttccttctttg-cccatctatttctccaaggaatcctgctgcctttcagtggaggattgttcacg
B D                  Baboon  ccttgtgccttctttg-cccatctatttctccaaggaatcctgctgcctttcagtggatgtttgttcatg
B D            Green monkey  ccttgtgccttctttg-cccatctatttctccaaggaatcctgctgcctttcagtggaggattgttcacg
B D                Marmoset  ccttgtgccttctttg-cccatctatttctccaaggaatcctgctgcctttcagtagaggattgttcagg
B D                Bushbaby  ccttgttctttctttg-cccatcaatttctccaaggaatcctgctgctttttagtggagtatagttcaga
B D                     Pig  -cttgatagttcttcagcttggctgtttctccaaggaattctgattccttt--------agtggttcaga
B D                   Horse  ccttcttttctctgca-ctcaa-catttctccaaggagccctgactgcttttcatggagaatggttcaga
B D        White rhinoceros  ccttcttctctctgca-ctcag-gatttctccgaggaaccctgactcctttaagtggagaatggttcaga
B D                     Cat  ccttgttctttgttcc-ctcaacggcgtctccaaggaatcctgcttccttttgctggagaatggtccagg
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ======================================================================

                      Human  aacaaaatccaggcactagttgaaccccttcatgtgtgggatggttcatcccatttcccaagcccctgac
                      Chimp  aacaaaatccaggcactagttgaaccgcttcatgtgtgggatggttcatcccatctcccaagcccctgac
                    Gorilla  aacaaaatccaggcactagttgaaccccttcatgtgtgggatggttcatcccatctcccgagcccctgac
                  Orangutan  aacaaaatccaggcactagttgaacccccttatgtgtgggatggttcatcccatctcccaagcccctgac
                     Gibbon  aacaaaatccaggcactagctgaacccctttatgtgtgggatggttcatcctatctcccaagcccctgac
                     Rhesus  aacaaaatccaggcactagttgaacccctttatgtgtgggatggttcatcccatctcccaagcccctgac
        Crab-eating macaque  aacaaaatccaggcactagttgaacccctttatgtgtgggatggttcatcccatctcccaagcccctgac
                     Baboon  aacaaaatccaggcactagttgaacccctttatgtgtgggatggttcatcccatctcccaagcccctgac
               Green monkey  aacaaaatccaggcactagttgaacccctttatgtgtgggatggttcatcccatctcccaagcccctgac
                   Marmoset  aacaaaatccaggcactggttgaacccctttatgtgtgggatggtttttcctgtctcccaagcccctgac
                   Bushbaby  aacaaaatctaggtacttgtagaagcccttt-tgtttgggacagttcaac--atctccctagctc---aa
                        Pig  aacagaattcagccattggttgaagcccttttcatttgggacaattcatcctgtctctccaattcccgct
                      Horse  aacaaaattcagcccctggttgaagccctttccatttgggacgattcatcctgtctccctagctcctgat
           White rhinoceros  agcaaaatttagccaccaattgaagcccttttcattcggggcaattcctcctgtctcccta-ctcctgat
                        Cat  aacaaaattcagccactggtgaaagccctttttatttgggacgatccgtcctgtctccctggctcctgac
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ======================================================================

                      Human  atgtcatgtg
                      Chimp  atgtcatgtg
                    Gorilla  atgtcatgtg
                  Orangutan  atgtcatgtg
                     Gibbon  atgtcatgtg
                     Rhesus  acgtcatgtg
        Crab-eating macaque  acgtcatgtg
                     Baboon  acgtcatgtg
               Green monkey  acgtcatgtg
                   Marmoset  gtgtcatgtg
                   Bushbaby  atatc-tgt-
                        Pig  -catcaactg
                      Horse  acaacagctg
           White rhinoceros  acgtcagctg
                        Cat  atgttgtctg
                     Rabbit  ==========
                       Pika  ==========
                  Armadillo  ==========
                      Panda  ==========
               Prairie vole  ==========
                        Rat  ==========
                      Mouse  ==========
            Chinese hamster  ==========
     Lesser Egyptian jerboa  ==========
              Domestic goat  ==========
                        Cow  ==========
                      Sheep  ==========
           Tibetan antelope  ==========
               Killer whale  ==========
                     Alpaca  ==========
            Star-nosed mole  ==========
                    Ferret   ==========
                   Squirrel  ==========
           Black flying-fox  ==========
                    Manatee  ==========
                   Elephant  ==========
             Bactrian camel  ==========
                    Opossum  ==========
                        Dog  ==========
           Brush-tailed rat  ==========
         Chinese tree shrew  ==========
                 Chinchilla  ==========
               Weddell seal  ==========
                    Dolphin  ==========
                    Megabat  ==========
                 Guinea pig  ==========
             Naked mole-rat  ==========
            Squirrel monkey  ==========

Inserts between block 16 and 17 in window
B D                    Pig 12bp
B D                  Horse 12bp
B D       White rhinoceros 12bp
B D                    Cat 1074bp

Alignment block 17 of 224 in window, 45121610 - 45121619, 10 bps 
B D                   Human  aactcaaaga
B D                   Chimp  aactcaaaga
B D                 Gorilla  aactcaaaga
B D               Orangutan  aactcaaaga
B D                  Gibbon  agctcaaaga
B D                  Rhesus  aactcaaaga
B D     Crab-eating macaque  aactcaaaga
B D                  Baboon  aactcaaaga
B D            Green monkey  aactcaaaga
B D                Marmoset  aactcaaaga
B D                Bushbaby  --------ta
B D                     Pig  gact--gaaa
B D                   Horse  aacttgaaca
B D        White rhinoceros  aactccaaca
B D                  Rabbit  ==========
B D                    Pika  ==========
B D               Armadillo  ==========
B D                   Panda  ==========
              Prairie vole  ==========
B D                     Rat  ==========
B D                   Mouse  ==========
B D         Chinese hamster  ==========
    Lesser Egyptian jerboa  ==========
             Domestic goat  ==========
B D                     Cow  ==========
B D                   Sheep  ==========
          Tibetan antelope  ==========
              Killer whale  ==========
B D                  Alpaca  ==========
           Star-nosed mole  ==========
B D                 Ferret   ==========
B D                Squirrel  ==========
          Black flying-fox  ==========
B D                     Cat  ==========
B D                 Manatee  ==========
B D                Elephant  ==========
            Bactrian camel  ==========
B D                 Opossum  ==========
B D                     Dog  ==========
          Brush-tailed rat  ==========
        Chinese tree shrew  ==========
                Chinchilla  ==========
              Weddell seal  ==========
B D                 Dolphin  ==========
B D                 Megabat  ==========
B D              Guinea pig  ==========
B D          Naked mole-rat  ==========
B D         Squirrel monkey  ==========

Alignment block 18 of 224 in window, 45121620 - 45121624, 5 bps 
B D                   Human  tgtat
B D                   Chimp  tgtat
B D                 Gorilla  tgtat
B D               Orangutan  tgtat
B D                  Gibbon  tgtat
B D                  Rhesus  tgtaa
B D     Crab-eating macaque  tgtaa
B D                  Baboon  tgtaa
B D            Green monkey  tgtag
B D                Marmoset  tgtat
B D                Bushbaby  tgtat
     Lesser Egyptian jerboa  tgtac
B D                     Pig  tgtgg
B D                   Horse  tgtgg
B D        White rhinoceros  tgtgg
B D                  Rabbit  =====
B D                    Pika  =====
B D               Armadillo  =====
B D                   Panda  =====
              Prairie vole  =====
B D                     Rat  =====
B D                   Mouse  =====
B D         Chinese hamster  =====
             Domestic goat  =====
B D                     Cow  =====
B D                   Sheep  =====
          Tibetan antelope  =====
              Killer whale  =====
B D                  Alpaca  =====
           Star-nosed mole  =====
B D                 Ferret   =====
B D                Squirrel  =====
          Black flying-fox  =====
B D                     Cat  =====
B D                 Manatee  =====
B D                Elephant  =====
            Bactrian camel  =====
B D                 Opossum  =====
B D                     Dog  =====
          Brush-tailed rat  =====
        Chinese tree shrew  =====
                Chinchilla  =====
              Weddell seal  =====
B D                 Dolphin  =====
B D                 Megabat  =====
B D              Guinea pig  =====
B D          Naked mole-rat  =====
B D         Squirrel monkey  =====

Alignment block 19 of 224 in window, 45121625 - 45121681, 57 bps 
B D                   Human  tgagttattgagtgaacacagagaggcaatgatggagacagcaaagctgaagatgat
B D                   Chimp  tgagttattgagtgaacacagagaggcaatgatggagacagcaaagctgaagatgat
B D                 Gorilla  tgagttattgagtgaacacagagaggcaatgatggagacagcaaagctgaagatgat
B D               Orangutan  tgagttactgagtgaacacagagaggcaatgatggagacagcaaagctgaagatgat
B D                  Gibbon  tgagttattgagtgaacacagagaggcaatggtggagacagcaaagctgaagatgat
B D                  Rhesus  tgcgttattgagtgaacacagagagaaaatgatggagacagcaaagttgaagatgat
B D     Crab-eating macaque  tgcgttattgagtgaacacagagagaaaatgatggagacagcaaagttgaagatgat
B D                  Baboon  tgcgttattgagtgaacgcagagagaaaatgatggagacagcaaagttgaatatgat
B D            Green monkey  cgcgttattgagtgaacacagagagaaaatgatagagacagcaaagttgaagatgat
B D                Marmoset  tgactcatcgagtgaacgcagagaggaagtaatggagatagcaaagtcgaagacgat
B D         Squirrel monkey  tgagttcctgagtgaacacaaagaggaaataaaggagacagcaaagttgaagatgat
B D                Bushbaby  tgagtttttgagtgaatgcagatggaaaatgatggagacattcaaattgaaaatgct
     Lesser Egyptian jerboa  tgagttattgagtgatcacagatgg--aattgtaaacaagaaaaatatgatgatggt
B D                     Pig  ccaattatcgagtgaatctggacaggaa--ggtggagg------------agaca--
B D                   Horse  tgacttattgagtgaacccagacaggcagagatggaga----caaactgaaggcagg
B D        White rhinoceros  tgacatattgagcgaacccagagaggcagtgatggagagagtcaaactgaaggcagt
B D                  Rabbit  =========================================================
B D                    Pika  =========================================================
B D               Armadillo  =========================================================
B D                   Panda  =========================================================
              Prairie vole  =========================================================
B D                     Rat  =========================================================
B D                   Mouse  =========================================================
B D         Chinese hamster  =========================================================
             Domestic goat  =========================================================
B D                     Cow  =========================================================
B D                   Sheep  =========================================================
          Tibetan antelope  =========================================================
              Killer whale  =========================================================
B D                  Alpaca  =========================================================
           Star-nosed mole  =========================================================
B D                 Ferret   =========================================================
B D                Squirrel  =========================================================
          Black flying-fox  =========================================================
B D                     Cat  =========================================================
B D                 Manatee  =========================================================
B D                Elephant  =========================================================
            Bactrian camel  =========================================================
B D                 Opossum  =========================================================
B D                     Dog  =========================================================
          Brush-tailed rat  =========================================================
        Chinese tree shrew  =========================================================
                Chinchilla  =========================================================
              Weddell seal  =========================================================
B D                 Dolphin  =========================================================
B D                 Megabat  =========================================================
B D              Guinea pig  =========================================================
B D          Naked mole-rat  =========================================================

Inserts between block 19 and 20 in window
    Lesser Egyptian jerboa 1705bp

Alignment block 20 of 224 in window, 45121682 - 45121692, 11 bps 
B D                   Human  gcaaagaccta
B D                   Chimp  gcaaagaccta
B D                 Gorilla  gcaaagaccta
B D               Orangutan  gcaaagaccta
B D                  Gibbon  gcaaagaccta
B D                  Rhesus  gcagaggccta
B D     Crab-eating macaque  gcagaggccta
B D                  Baboon  gcagaggacta
B D            Green monkey  gcagaggccta
B D                Marmoset  gcaaaggccta
B D         Squirrel monkey  gcaaaggccta
B D                Bushbaby  tcacaggccta
B D                     Pig  -cagaggccca
B D                   Horse  gcaagggccca
B D        White rhinoceros  gcaagggccca
B D                  Rabbit  ===========
B D                    Pika  ===========
B D               Armadillo  ===========
B D                   Panda  ===========
              Prairie vole  ===========
B D                     Rat  ===========
B D                   Mouse  ===========
B D         Chinese hamster  ===========
    Lesser Egyptian jerboa  ===========
             Domestic goat  ===========
B D                     Cow  ===========
B D                   Sheep  ===========
          Tibetan antelope  ===========
              Killer whale  ===========
B D                  Alpaca  ===========
           Star-nosed mole  ===========
B D                 Ferret   ===========
B D                Squirrel  ===========
          Black flying-fox  ===========
B D                     Cat  ===========
B D                 Manatee  ===========
B D                Elephant  ===========
            Bactrian camel  ===========
B D                 Opossum  ===========
B D                     Dog  ===========
          Brush-tailed rat  ===========
        Chinese tree shrew  ===========
                Chinchilla  ===========
              Weddell seal  ===========
B D                 Dolphin  ===========
B D                 Megabat  ===========
B D              Guinea pig  ===========
B D          Naked mole-rat  ===========

Alignment block 21 of 224 in window, 45121693 - 45121704, 12 bps 
B D                   Human  gcatctcaaaca
B D                   Chimp  gcatctcaaaca
B D                 Gorilla  gcatctcaaaca
B D               Orangutan  tcatctcaaaca
B D                  Gibbon  gcatctcaaaca
B D                  Rhesus  gcatctcaaaca
B D     Crab-eating macaque  gcatctcaaaca
B D                  Baboon  gcatctcaaaca
B D            Green monkey  gcatctcaaaca
B D                Marmoset  gca--tcaaaca
B D                Bushbaby  gcatctcaaaca
B D                     Pig  gggtctcaagca
B D                   Horse  -gatctcacagg
B D        White rhinoceros  -ggtctcacacg
B D                  Rabbit  ============
B D                    Pika  ============
B D               Armadillo  ============
B D                   Panda  ============
              Prairie vole  ============
B D                     Rat  ============
B D                   Mouse  ============
B D         Chinese hamster  ============
    Lesser Egyptian jerboa  ============
             Domestic goat  ============
B D                     Cow  ============
B D                   Sheep  ============
          Tibetan antelope  ============
              Killer whale  ============
B D                  Alpaca  ============
           Star-nosed mole  ============
B D                 Ferret   ============
B D                Squirrel  ============
          Black flying-fox  ============
B D                     Cat  ============
B D                 Manatee  ============
B D                Elephant  ============
            Bactrian camel  ============
B D                 Opossum  ============
B D                     Dog  ============
          Brush-tailed rat  ============
        Chinese tree shrew  ============
                Chinchilla  ============
              Weddell seal  ============
B D                 Dolphin  ============
B D                 Megabat  ============
B D              Guinea pig  ============
B D          Naked mole-rat  ============
B D         Squirrel monkey  ------------

Alignment block 22 of 224 in window, 45121705 - 45121813, 109 bps 
B D                   Human  gtccttgcactcctggtccctggtcc------ctgacaccagtgtcttctgagatggcccctggtgcccc
B D                   Chimp  gtccttgcactcctggtccctggccc------ctgacaccagtgtcttctgagatggcccctggtgcccc
B D                 Gorilla  gtccttgcactcctggtccctggtct------ctgacaccagtgtcttctgagatggcccctggcgcccc
B D               Orangutan  gtccttgcactcctggtccctggtcc------ctgacaccagtgtcttctgagatggcccctggtgcccc
B D                  Gibbon  gtccttgcactcctggtccctggtcc------ctgacaccagtgtcttctgagatgg-ccctggtgcccc
B D                  Rhesus  gtccttgcactcctggtccctggtcc----------------------ctgagatagccccttgtgcccc
B D     Crab-eating macaque  gtccttgcactcctggtccctggtcc----------------------ctgagatagccccttgtgcccc
B D                  Baboon  gtccttgcactcctggtccctggtcc----------------------ctgagatagccccttgtgcccc
B D            Green monkey  gtccttgcactcctggttcctggtcc----------------------ctgagatagcccctggtgcccc
B D                Marmoset  gtccttgcactcctggtccctggtcctgttccctgacaccggtgtcttctgagatggcccctggtgcccc
B D                Bushbaby  gtccttgcagacctggtccctggtcc------atgacaccagagccttctgggatggcttctggtgccct
     Lesser Egyptian jerboa  gtccttgcactcttgatttctagtct------ttgacattagtgccttctgaaatggcctctggcacccc
B D                     Pig  g-ttgcccactctcagtgcctg-------------------gtgccttctgagatgg---------ccct
B D                   Horse  gccttcatgcccctggtgccgggaca------------ccagcaccttctgagacgggccctggcaccct
B D        White rhinoceros  gccttcacactcctggtgcctggaca------------ccagcgccttctgagacagcccccagtgccct
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ----------------------------------------------------------------------

                      Human  agactccccacttcactggttgggccctgccttca-agacagctct
                      Chimp  agactccccacttcactggttgggccctgccttca-cgacagctct
                    Gorilla  agactccccacttcactggttgggccctgccttca-cgacagctct
                  Orangutan  agactccccatttcactggttgggccctgccttca-cgacagctct
                     Gibbon  agactccccacttcactggttgggccctgccttca-tggcagctct
                     Rhesus  agactccccacttcactggttgggccctgccttca-cggcagctct
        Crab-eating macaque  agactccccacttcactggttgggccctgccttca-cggcagctct
                     Baboon  agacttcccacttcactggttgggccctgccttca-tggcagctct
               Green monkey  agactccccacttcactggttgggccatgccttca-cggcagctct
                   Marmoset  agactccccacttcactggttgggccctgccttca-tggcagctct
                   Bushbaby  gga-tttccatttccctccttgggggctgctttca-cag-------
     Lesser Egyptian jerboa  aacttcccc---tccctcactgaggactgccttca-caagtgttct
                        Pig  gggccccaccgctc----------cccttct----ccagcagttct
                      Horse  gcatcccacccctc----------ccctttctgcaccagcagttcc
           White rhinoceros  gtgctccacacccc----------cgcttcccacaccagcagttcc
                     Rabbit  ==============================================
                       Pika  ==============================================
                  Armadillo  ==============================================
                      Panda  ==============================================
               Prairie vole  ==============================================
                        Rat  ==============================================
                      Mouse  ==============================================
            Chinese hamster  ==============================================
              Domestic goat  ==============================================
                        Cow  ==============================================
                      Sheep  ==============================================
           Tibetan antelope  ==============================================
               Killer whale  ==============================================
                     Alpaca  ==============================================
            Star-nosed mole  ==============================================
                    Ferret   ==============================================
                   Squirrel  ==============================================
           Black flying-fox  ==============================================
                        Cat  ==============================================
                    Manatee  ==============================================
                   Elephant  ==============================================
             Bactrian camel  ==============================================
                    Opossum  ==============================================
                        Dog  ==============================================
           Brush-tailed rat  ==============================================
         Chinese tree shrew  ==============================================
                 Chinchilla  ==============================================
               Weddell seal  ==============================================
                    Dolphin  ==============================================
                    Megabat  ==============================================
                 Guinea pig  ==============================================
             Naked mole-rat  ==============================================
            Squirrel monkey  ----------------------------------------------

Inserts between block 22 and 23 in window
    Lesser Egyptian jerboa 10304bp

Alignment block 23 of 224 in window, 45121814 - 45121846, 33 bps 
B D                   Human  --gggtgctctgttttagggggacccttctt---gtcc
B D                   Chimp  --gggtgctctgttttagggggacccttctt---gtcc
B D                 Gorilla  --gggtgctctgttttagggggacccttctt---gtcc
B D               Orangutan  --gggtgctctgttttagggggacccttctt---gtcc
B D                  Gibbon  --gggtgctctattttagggggacccttctt---gtcc
B D                  Rhesus  --gggggctctgttttaagggggcccttctt---gtcc
B D     Crab-eating macaque  --gggggctctgttttaggggggcccttctt---gtcc
B D                  Baboon  --gggtgctctgttttaggggggcccttctt---gtcc
B D            Green monkey  --gggtgctctgttttagggggacccttctt---gtcc
B D                Marmoset  --gtgtgctctgttttaggggggcccttctt---gtcc
B D                Bushbaby  ------------------------------t---gccc
B D                     Pig  agggccactttcatttaggagggctcctctcttc----
B D                   Horse  agggccgctgtgactcaggggggcccctctc-------
B D        White rhinoceros  agggctgctgtgattcaggaaggcccctctc-------
B D                  Rabbit  ======================================
B D                    Pika  ======================================
B D               Armadillo  ======================================
B D                   Panda  ======================================
              Prairie vole  ======================================
B D                     Rat  ======================================
B D                   Mouse  ======================================
B D         Chinese hamster  ======================================
    Lesser Egyptian jerboa  ======================================
             Domestic goat  ======================================
B D                     Cow  ======================================
B D                   Sheep  ======================================
          Tibetan antelope  ======================================
              Killer whale  ======================================
B D                  Alpaca  ======================================
           Star-nosed mole  ======================================
B D                 Ferret   ======================================
B D                Squirrel  ======================================
          Black flying-fox  ======================================
B D                     Cat  ======================================
B D                 Manatee  ======================================
B D                Elephant  ======================================
            Bactrian camel  ======================================
B D                 Opossum  ======================================
B D                     Dog  ======================================
          Brush-tailed rat  ======================================
        Chinese tree shrew  ======================================
                Chinchilla  ======================================
              Weddell seal  ======================================
B D                 Dolphin  ======================================
B D                 Megabat  ======================================
B D              Guinea pig  ======================================
B D          Naked mole-rat  ======================================
B D         Squirrel monkey  --------------------------------------

Alignment block 24 of 224 in window, 45121847 - 45122263, 417 bps 
B D                   Human  ttctgcacatggctctggggaactc--tttttggggg--ccttcctctcttcctgtacacatcagcagtg
B D                   Chimp  ttctgcacatggctctggggaactc--tttttggggg--ccttcctctcttcctgtacacatcagcagtg
B D                 Gorilla  ttctgcacatggctctggggaactc--tttttggggg--ccttcctctcttcctgtacacatcagcagtg
B D               Orangutan  ttctgcacatggctctggggaactc--tttttggggg--ccttcctctcttcctgtacacaccagcagtg
B D                  Gibbon  ttctacacatggctctggggaactc--tttttggggg--ccttcctctcttcctgtacacaccagcagtg
B D                  Rhesus  ttctgcacatggctctgggggactc--tttttggggg-cccttcttctcctcctgcacacaccagcagtg
B D     Crab-eating macaque  ttctgcacatggctctgggggactc--tttttggggg-cccttcttctcctcctgcacacaccagcagtg
B D                  Baboon  ttctgcacatggctctgggggactc--tttttggggg-cccttcttctcctcctgcacacaccagcagtg
B D            Green monkey  ttctgcacatggctctgggggactc--tttttggggg-cccttcttctcctcctgcacacaccagcagtg
B D                Marmoset  ttctgtacgtggctctgggaaactctgtttttggggg-cccttcttctcctcctgcacacaccagccatg
B D                Bushbaby  ttt--------------gggcactc--tgtttaggggggccttctcctgtttccacacataccagca--g
B D                  Rabbit  tcctgcacatgcctctg----------tctggggggg-cctttcctctcactctgcacat----------
B D                     Pig  --------------------------------------------------tcctgcatatggcaaca--c
B D                   Horse  ----------------------------------------------------------------------
B D        White rhinoceros  ----------------------------------------------------------------------
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ----------------------------------------------------------------------

                      Human  agcaggctctttcttctgggaggcccctgtgcac-ctcaagggcagcagcttgg------ccaggacagc
                      Chimp  agcaggctctttcttctgggaggcccctgtgcac-ctcaagggcagcagcttgg------ccaggacagc
                    Gorilla  agcaggctctttcttctgggaggcccctgtgcac-ctcaagggcagcagcttgg------ccaggacagc
                  Orangutan  agcaggctctttcttctgggaggcccctgtgcac-ctcaagggcagcagcttgg------ccaggacagc
                     Gibbon  agcaggctttttcttctaggaggcccctgtgcac-ctcaagggcagcagcttgg------ccaggacagc
                     Rhesus  agcaggctctttcttctgggaggcccccgtgcac-cccaagggcagcagc-tag------tcaggacagc
        Crab-eating macaque  agcaggctctttcttctgggaggcccccgtgcac-cccaagggcagcagcttag------tcaggacagc
                     Baboon  agcaggctctttcttctgggaggcccccgtgctc-cccaagggcagcagcttag------tcaggacagc
               Green monkey  agcaggctctttcttctgggaggcccccgtgcac-cccaagggcagcagcttgg------tcaggacagc
                   Marmoset  agcaggctctttcttctgggaggtccctgtgcaa-cccaagggcagcagactgg------ccaggacagc
                   Bushbaby  aaaaggctctttcttctgagagacctgtgtgtac-tccaagggcagcaatgtg----------ggatggt
                     Rabbit  -gatggctctttcttctgcgaggcctctgtgcac-cccccggccagcagcctgggacagcctgggacagc
                        Pig  agcaggctctcttttgtgggggac-cttgtgtacgcccaaagccagtagcctgg----------------
                      Horse  -------------ttgtgggagatccacgtgcac-cctgaggccagcagcctgg----------------
           White rhinoceros  -------------ttgtgggagac-----tgcac-cctgaggccagcaacctgc----------------
                       Pika  ======================================================================
                  Armadillo  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  ctg----gtccctctgtgtgcaacaccta-ggaaggcctggcacttatgggttaaaggtcagtc----ct
                      Chimp  ctg----gtccctctgtgtgcaacaccca-ggaaggcctggcacttatgggttaaaggtcagtc----ct
                    Gorilla  ctg----gaccttctgtgtgcaacaccca-ggaaggcctggcacttatgggttaaaggtcagtc----ct
                  Orangutan  ctg----gcccctccgtgtgcaacaccca-ggaaggcctggcacttatgggttaaaggtcagtc----ct
                     Gibbon  ctg----gtccctccgtgtgcaacaccca-ggaaggcctgacacttatgggttaaaggtcagtc----ct
                     Rhesus  ctg----gcccctccgcgtgcaacaccca-ggaaggcctggcacttacgggttaaaagtcagta----ct
        Crab-eating macaque  ctg----gcccctccgcatgcaacaccca-ggaaggcctggcacttatgggttaaaagtcagta----ct
                     Baboon  ctg----gcccctccgcgtgcaacaccca-ggaaggcctggcacttatgggttaaaagtcagta----ct
               Green monkey  ctg----gcccctccgtgtgcaacaccca-ggaaggcctggcacttatgggttaaaagtcagtc----ct
                   Marmoset  ctggcctgcccctccctgtgcagcacccagggaaggcctggcacttatgggttaaaggtcagtc----ct
                   Bushbaby  ctg----gcccctccatgttacacaccca-gtaaggcctggtgcttatgggttgaaggtcagt-----ct
                     Rabbit  ctg----gcctgtctctgtgccacaccca-ggaagggctgaacttcacaggctggagctcactc----tc
                        Pig  ------------------------------ggaggg-ctggtacacaggggctaataggcagtcgagaat
                      Horse  ------------------------------gaagggcctggtac-tagggattgaaggtcagtcaagact
           White rhinoceros  ------------------------------aaagggcctggtgc-tatgggttgaagttcagtcaagact
                       Pika  ======================================================================
                  Armadillo  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  gccttcctcctccattcactgacagagcatgatgatg-----gaggtctctgtgggcactgaagccgtag
                      Chimp  gccttcctcctccattcactgacagagcatgatgatg-----gaggtctctgtgggcactgaagccgtag
                    Gorilla  gccttcctcctccattcactgacagagcatgatgatg-----gaggtctctgtgggcactgaagccgtag
                  Orangutan  gccttcctcctccattcactgatggagcatgatgatg---gagaggtctctgtgggcactgaagccatgg
                     Gibbon  gccttcctcctccattcactgac--agcatgatgatg---gagaggtctctgtgggtactgaagccgtag
                     Rhesus  gccttcctcttccattcattgacagagcatgatgatg---gagaggtctctgtgggcactgaagctgtag
        Crab-eating macaque  gccttcctcttccattcattgacagagcatgatgatg---gagaggtctctgtgggcactgaagccgtag
                     Baboon  gccttcctcttccattcattgacagagcatgatgatg---gagaggtctctgtgggcactgaagctgtag
               Green monkey  gccttcctcttccattcattgacagagcatgatgatg---gagaggtctctgtgggcactgaagccgtag
                   Marmoset  gccttcctcctccattcactgacagagcatgatgatg---gagagatctctgcgggcactgaagccataa
                   Bushbaby  gtctgacttcaacattcactaacagagtgtgatgatgacagataggtctttgtgggcactgaagccctag
                     Rabbit  ctcttcttactctgttcactgactgc-cacggaaaag---gacaggggttcgtgggcactgaagcc-cag
                        Pig  gcttttttcctc--ttcactgactccgtataatgggg---gccagg-cctcgtgggcaccaaagccaggg
                      Horse  ctgtccttcctctagtcatggatacagtatgacgatg---gtcaggaattcgtgggcacggaagcctggg
           White rhinoceros  ctgtccttcctc--gtcacggacacagtgtgacgacg---gacaggacttcgtgggcactgaagcctggg
                       Pika  ======================================================================
                  Armadillo  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  ggaagtgaccttaccaggtc-acataaccagtgagcgtggctctcatgga-----------------tgt
                      Chimp  ggaagtgaccttaccaggtc-acataaccagtgagcgtggctctcatgga-----------------tgt
                    Gorilla  ggaagtgaccttaccaggtc-acataaccagtgagcgtggctctcatgga-----------------tgt
                  Orangutan  ggaagtgaccttaccaggtcaacataaccagtgagtgtggctctcatgga-----------------tgt
                     Gibbon  ggaagtgaccttaccaggtc-acataaccagtgagcatgggtctcatgga-----------------tgt
                     Rhesus  ggaagtgaccttaccgggtc-acataaccagtaagtgtggctcttgtggatgtgggctcctcatgagtgt
        Crab-eating macaque  ggaagtgaccttaccgggtc-acataaccagtaagtgtggctcttgtgga-----------------tgt
                     Baboon  ggaagtgaccttaccgggtc-acataaccagtaagtgtggctcttgtgga-----------------tgt
               Green monkey  ggaagtgaccttaccaggtc-acataaccagtaagtgtggctcttgtgga-----------------tgt
                   Marmoset  ggaagtgaccttattaggtc-acatagccagtgatcatggctctcatggg-----------------tga
                   Bushbaby  agaaatgatctcatgcagtc-acat-gtcagtgagtgtggctctgatgag-----------------tgt
                     Rabbit  ggaagtgacctcac-aggta-----------------------------------------------cgt
                        Pig  aggagtgac--------ctc-atgtg-----------------ccatggg-----------------cct
                      Horse  aggagtgacctcacaagctc-atgta-----------------ccat-gg-----------------cgt
           White rhinoceros  aggagcgacctcacaagctc-atgta-----------------ctgt-gg-----------------tgt
                       Pika  ======================================================================
                  Armadillo  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  gggctcctcatgagtgtgggctcccggagaatctaggcttgctgtgagtgtggcttgcttgggccggccc
                      Chimp  gggctcctcatgagtgtgggctcccggagaatctaggcttgctgtgagtgtggcttgcttgggccggccc
                    Gorilla  gggctcctcatgagtgtgggctcctggagaatctaggcttgctgtgagtgtggcttgcttgggctggccc
                  Orangutan  gggctcctcatgagtgtgggctcccggagaatctaggcttgctgtgagtgtggcttg------------t
                     Gibbon  gggctcctcatgagtgtgggctcccggagaaaacaggcttgctgtgagtgtggcttgcttgggccggccc
                     Rhesus  gggctcctcatgagtgtgggctctcagagaatcgaggctcactgtgagtgtggcttgcttgggctggccc
        Crab-eating macaque  gggctcctcatgagtgtgggctctcagagaatcgaggctcactgtgagtgtggcttgcttgggctggccc
                     Baboon  gggctcctcatgagtgtgggctctcagagaattgaggctcactgtgagtgtggcttgcttgggctggccc
               Green monkey  gggctcctcatgagtgtgggctctcagagaatggaggctcgctgtgagtgtggcttgcttgggctggccc
                   Marmoset  gggctcctcatgagtgtgggctcccagagaacctaggctcactgtgagtgtggtttgctggggccagccc
                   Bushbaby  gggcctcttgtgagcatgggctccctaag--tgtggtctccctgtgagcatggcaagccaggact-gctc
                     Rabbit  ggg--------------------------------ggctccctgagggcgtggctcaccctgaatggc-c
                        Pig  gggcttcccatga--------------------------------------------------ctggccc
                      Horse  gggctccccgtga--------------------------------------------------ctagtc-
           White rhinoceros  gggctccccgtgt--------------------------------------------------ctagtct
                       Pika  ======================================================================
                  Armadillo  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  tgttgttctcccttgcaagctct---gag-g---------------aggcagggatgga
                      Chimp  tgttgttctcccttgcaagctct---gag-g---------------aggcaggaatgga
                    Gorilla  tgttgttctcccttgcaagctct---gag-g---------------aggcagggatgga
                  Orangutan  tgttgttctcccttgcaagctct---gag-g---------------aggcagggatgga
                     Gibbon  tgttgttctcccttgcaagctct---gag-g---------------aggcagggatgga
                     Rhesus  tgttgttcacccttgcaagctct---gag-g---------------aggcagggatgga
        Crab-eating macaque  tgttgttcacccttgcaagctct---gag-g---------------aggcagggatgga
                     Baboon  tattgttcacccttgcaagctct---gag-g---------------aggcagggatgga
               Green monkey  tgttgttcacccttgcaagctct---gag-g---------------aggcagggatgga
                   Marmoset  tattattttcccttgcaagctctgaggag-g---------------aggcagggatgga
                   Bushbaby  tgttgtcctcccttgtaagctgt---gag-gaaggctttctttccaaggccaggatgaa
                     Rabbit  tgctgcccttcctggcaagctc------------------------aaacaggggtgga
                        Pig  tgtcaccctaccttccaagctct---gggaa-gggtcttctccccagggcagggatgga
                      Horse  catcatcctcccttcccagctct---aag-g-gggccttctctccagggcaggcatgga
           White rhinoceros  cataatcctcccttccaagctct---gag-g-ggaccttctccccatggcagggatgga
                       Pika  ===========================================================
                  Armadillo  ===========================================================
                      Panda  ===========================================================
               Prairie vole  ===========================================================
                        Rat  ===========================================================
                      Mouse  ===========================================================
            Chinese hamster  ===========================================================
     Lesser Egyptian jerboa  ===========================================================
              Domestic goat  ===========================================================
                        Cow  ===========================================================
                      Sheep  ===========================================================
           Tibetan antelope  ===========================================================
               Killer whale  ===========================================================
                     Alpaca  ===========================================================
            Star-nosed mole  ===========================================================
                    Ferret   ===========================================================
                   Squirrel  ===========================================================
           Black flying-fox  ===========================================================
                        Cat  ===========================================================
                    Manatee  ===========================================================
                   Elephant  ===========================================================
             Bactrian camel  ===========================================================
                    Opossum  ===========================================================
                        Dog  ===========================================================
           Brush-tailed rat  ===========================================================
         Chinese tree shrew  ===========================================================
                 Chinchilla  ===========================================================
               Weddell seal  ===========================================================
                    Dolphin  ===========================================================
                    Megabat  ===========================================================
                 Guinea pig  ===========================================================
             Naked mole-rat  ===========================================================
            Squirrel monkey  -----------------------------------------------------------

Alignment block 25 of 224 in window, 45122264 - 45122288, 25 bps 
B D                   Human  ggaagctgagcaatatctccaggtc
B D                   Chimp  ggaagctgagcaatatctccaggtc
B D                 Gorilla  ggaagctgagcaatatctccaggtc
B D               Orangutan  ggaagctgagcaatatctccaggtc
B D                  Rhesus  gggagctaagcaatatctctaggac
B D     Crab-eating macaque  gggagctaagcaatatctctaggac
B D                  Baboon  gggagctaagcaatatctctaggac
B D            Green monkey  gggagctaagcaatatctccaggac
B D                Marmoset  gggagctaagtcatatctccaggtc
B D                Bushbaby  aggagatgtgtgatgtcccctggtc
B D                  Rabbit  gggaggtaagcgttatcttggggtc
B D                     Pig  gggaggtgagacacgtccccatgtc
B D                   Horse  gggaggtgagccacatctctgtgtc
B D        White rhinoceros  -ggaggtgagccatatccctgtgtc
B D                    Pika  =========================
B D               Armadillo  =========================
B D                   Panda  =========================
              Prairie vole  =========================
B D                     Rat  =========================
B D                   Mouse  =========================
B D         Chinese hamster  =========================
    Lesser Egyptian jerboa  =========================
             Domestic goat  =========================
B D                     Cow  =========================
B D                   Sheep  =========================
          Tibetan antelope  =========================
              Killer whale  =========================
B D                  Alpaca  =========================
           Star-nosed mole  =========================
B D                 Ferret   =========================
B D                Squirrel  =========================
          Black flying-fox  =========================
B D                     Cat  =========================
B D                 Manatee  =========================
B D                Elephant  =========================
            Bactrian camel  =========================
B D                 Opossum  =========================
B D                     Dog  =========================
          Brush-tailed rat  =========================
        Chinese tree shrew  =========================
                Chinchilla  =========================
              Weddell seal  =========================
B D                 Dolphin  =========================
B D                 Megabat  =========================
B D              Guinea pig  =========================
B D          Naked mole-rat  =========================
B D         Squirrel monkey  -------------------------
B D                  Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 25 and 26 in window
B D                 Rabbit 43bp

Alignment block 26 of 224 in window, 45122289 - 45122336, 48 bps 
B D                   Human  ccaccttcatctcagccagcctgatggtatgggtcgtctccttgacct
B D                   Chimp  ccaccttcatctcagccagcctgatggtatgggtcgtctccttgacct
B D                 Gorilla  ccaccttcatctcagccagcctgatggtatgggtcatctccttgacct
B D               Orangutan  ccaccttcatctcagccagcctgatggtatgggttgtctccttgacct
B D                  Rhesus  ccaccttcatctcaaccagcctgatggcatgggttgcctccttgatct
B D     Crab-eating macaque  ccaccttcatctcaaccagcctgatggcatgggttgcctccttgatct
B D                  Baboon  ccaccttcatctcaaccagcctgatggcatgggttgcctccttgatct
B D            Green monkey  ccaacttcatctcaaccagcctgatggcatgggttgcctccttgatct
B D                Marmoset  ccaccttcatcttagccagcctgagggcatgggttgtctccttgacct
B D                Bushbaby  ttaccttctcttcagccagccagatggaaggggctgtctccctgacct
B D                     Pig  ccaccttcatctcagccagtgtgatgatgtgggtggcccccttgacct
B D                   Horse  ccaccttcatctcagccagtctgatggtgt--gttgtcccctagactt
B D        White rhinoceros  cca--ttcgtctcagccagtctgatggcat--gtcattcccttgacct
B D                  Rabbit  ================================================
B D                    Pika  ================================================
B D               Armadillo  ================================================
B D                   Panda  ================================================
              Prairie vole  ================================================
B D                     Rat  ================================================
B D                   Mouse  ================================================
B D         Chinese hamster  ================================================
    Lesser Egyptian jerboa  ================================================
             Domestic goat  ================================================
B D                     Cow  ================================================
B D                   Sheep  ================================================
          Tibetan antelope  ================================================
              Killer whale  ================================================
B D                  Alpaca  ================================================
           Star-nosed mole  ================================================
B D                 Ferret   ================================================
B D                Squirrel  ================================================
          Black flying-fox  ================================================
B D                     Cat  ================================================
B D                 Manatee  ================================================
B D                Elephant  ================================================
            Bactrian camel  ================================================
B D                 Opossum  ================================================
B D                     Dog  ================================================
          Brush-tailed rat  ================================================
        Chinese tree shrew  ================================================
                Chinchilla  ================================================
              Weddell seal  ================================================
B D                 Dolphin  ================================================
B D                 Megabat  ================================================
B D              Guinea pig  ================================================
B D          Naked mole-rat  ================================================
B D         Squirrel monkey  ------------------------------------------------
B D                  Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 26 and 27 in window
B D               Marmoset 209bp
B D               Bushbaby 1bp

Alignment block 27 of 224 in window, 45122337 - 45122337, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D                Bushbaby  a
B D                     Pig  t
B D                   Horse  t
B D        White rhinoceros  g
B D                  Rabbit  =
B D                    Pika  =
B D               Armadillo  =
B D                   Panda  =
              Prairie vole  =
B D                     Rat  =
B D                   Mouse  =
B D         Chinese hamster  =
    Lesser Egyptian jerboa  =
             Domestic goat  =
B D                     Cow  =
B D                   Sheep  =
          Tibetan antelope  =
              Killer whale  =
B D                  Alpaca  =
           Star-nosed mole  =
B D                 Ferret   =
B D                Squirrel  =
          Black flying-fox  =
B D                     Cat  =
B D                 Manatee  =
B D                Elephant  =
            Bactrian camel  =
B D                 Opossum  =
B D                     Dog  =
          Brush-tailed rat  =
        Chinese tree shrew  =
                Chinchilla  =
              Weddell seal  =
B D                 Dolphin  =
B D                 Megabat  =
B D              Guinea pig  =
B D          Naked mole-rat  =
B D         Squirrel monkey  -
B D                  Gibbon  N

Inserts between block 27 and 28 in window
B D                  Horse 452bp

Alignment block 28 of 224 in window, 45122338 - 45122405, 68 bps 
B D                   Human  atgtgctgggtcagtgagccaaatggggctgacctcaggtcaggcctgggcctg---gggcccctgggct
B D                   Chimp  atgtgctgggtcagtgagtcaaatggggctgacctcaggtcaggcctgggcctg---tggcccctgggct
B D                 Gorilla  atgtgctgggtcagtgagccaaatggggctgacctcaggtcaggcctgggcctg---gggcccctgggct
B D               Orangutan  atgtgctgggtcagtgagccaaatgggtctgacctcaggtcaggcctgggcctg---gggcccctgggct
B D                  Rhesus  atgtgctgggtcagtgagccaaatggggctgacctcaggtcagacctgggcatg---gggcccctgggct
B D     Crab-eating macaque  atgtgctgggtcagtgagccaaatggggctgacctcaggtcaggcctggtcatg---gggcccctgggct
B D                  Baboon  atgtgctgggtcagtgagccaaatggggctgacctcaggtcaggcctgggcatg---gggcccctgggct
B D            Green monkey  atgtgctgggtcagtgagccaaatggggctgacctcaggtcaggcctgggcatg---gggcgcccgggct
B D                Marmoset  atgtgtt------gtgaactaggtggggctgacctcaggtcaggcctgggcctg---gggcccctgggct
B D                Bushbaby  atgtgct-----------------------tatcccaagtcaggtctgggtctg---gggcccctgagct
B D                     Pig  aagtgct-ggctgatggcccagacaggactgaccccaggtcaagcctgtgcccacctggggcccatagct
B D                   Horse  atgtcct-ggctggtgagccagatgcggctgaccctaggccaagcctgggcttg---gggcccctgagct
B D        White rhinoceros  atgtgct-ggttggtgagccagacggggctgaccccaggtcaagcctgagcttg---gggccccggagct
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ----------------------------------------------------------------------
B D                  Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                      Human  c
                      Chimp  c
                    Gorilla  c
                  Orangutan  c
                     Rhesus  c
        Crab-eating macaque  c
                     Baboon  c
               Green monkey  c
                   Marmoset  c
                   Bushbaby  c
                        Pig  c
                      Horse  c
           White rhinoceros  c
                     Rabbit  =
                       Pika  =
                  Armadillo  =
                      Panda  =
               Prairie vole  =
                        Rat  =
                      Mouse  =
            Chinese hamster  =
     Lesser Egyptian jerboa  =
              Domestic goat  =
                        Cow  =
                      Sheep  =
           Tibetan antelope  =
               Killer whale  =
                     Alpaca  =
            Star-nosed mole  =
                    Ferret   =
                   Squirrel  =
           Black flying-fox  =
                        Cat  =
                    Manatee  =
                   Elephant  =
             Bactrian camel  =
                    Opossum  =
                        Dog  =
           Brush-tailed rat  =
         Chinese tree shrew  =
                 Chinchilla  =
               Weddell seal  =
                    Dolphin  =
                    Megabat  =
                 Guinea pig  =
             Naked mole-rat  =
            Squirrel monkey  -
                     Gibbon  N

Inserts between block 28 and 29 in window
B D               Bushbaby 10273bp

Alignment block 29 of 224 in window, 45122406 - 45122484, 79 bps 
B D                   Human  ctgcagaaacctaggcaggtgaggtagtggacccctccctctggcttgaccagggcccagcctgcct-cc
B D                   Chimp  ctgcagaaacctaggcaggtgaggtagtggacccctccctctggcttgaccagggcccagcctgcct-cc
B D                 Gorilla  ctgcagaaacctaggcaggtgaggcagtggacccctccctctggcttgaccagggcccagcctgcct-cc
B D               Orangutan  ctgcagaaacctaggcaggtgaggtagtggacccctccctctggcttgaccagggcccagcctgcct-cc
B D                  Rhesus  ctgcagaaagccaggcaggtgaggtagtggaccccgccctctggcttgaccagggcccagcctgcct-cc
B D     Crab-eating macaque  ctgcagaaagccaggcaggtgaggtagtggaccccgcc---------aggtagggcccagcctgcct-cc
B D                  Baboon  ctgcagaaagccaggcaggtgaggtagtggaccccgccctctggcttgaccagggcccagcctgcct-cc
B D            Green monkey  ctgcagaaagccaggcaggtgaggtagtggacccctccctctggcttgaccagggcccagcctgcct-cc
B D                Marmoset  ctgtagaaacccaggcaggagaggtaatggacccctctctctggcttgcccaggacccagcctgcct-cc
B D                     Pig  ccccagaccctgggagagaagaggtggtgg--cctttcctctggctcacccaggacccgtcctgtctacc
B D                   Horse  ccacagaacctgggacagaagagat-gtggaccccctcctcttg----cccagggcgc-ccccgcccccc
B D        White rhinoceros  ccccagaacctggaacagaagaggtagtggaccccttcctctggctttcccaggatcc-ccctgtcttcc
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                Bushbaby  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ----------------------------------------------------------------------
B D                  Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                      Human  tatgtcctgc
                      Chimp  tatgtcctgc
                    Gorilla  tatgtcctgc
                  Orangutan  tatgtcctgc
                     Rhesus  tatgtcctgc
        Crab-eating macaque  tatgtcctgc
                     Baboon  tatgtcctgc
               Green monkey  tatgtcccgc
                   Marmoset  tatgtcctgc
                        Pig  tacatcctgc
                      Horse  cacccccccc
           White rhinoceros  tatgtcctgc
                     Rabbit  ==========
                       Pika  ==========
                  Armadillo  ==========
                      Panda  ==========
               Prairie vole  ==========
                        Rat  ==========
                      Mouse  ==========
            Chinese hamster  ==========
     Lesser Egyptian jerboa  ==========
              Domestic goat  ==========
                        Cow  ==========
                      Sheep  ==========
           Tibetan antelope  ==========
               Killer whale  ==========
                     Alpaca  ==========
            Star-nosed mole  ==========
                    Ferret   ==========
                   Squirrel  ==========
           Black flying-fox  ==========
                        Cat  ==========
                    Manatee  ==========
                   Elephant  ==========
             Bactrian camel  ==========
                    Opossum  ==========
                   Bushbaby  ==========
                        Dog  ==========
           Brush-tailed rat  ==========
         Chinese tree shrew  ==========
                 Chinchilla  ==========
               Weddell seal  ==========
                    Dolphin  ==========
                    Megabat  ==========
                 Guinea pig  ==========
             Naked mole-rat  ==========
            Squirrel monkey  ----------
                     Gibbon  NNNNNNNNNN

Alignment block 30 of 224 in window, 45122485 - 45122487, 3 bps 
B D                   Human  cgg
B D                   Chimp  cgg
B D                 Gorilla  cgg
B D               Orangutan  cgg
B D                  Rhesus  cag
B D     Crab-eating macaque  cag
B D                  Baboon  cag
B D            Green monkey  cag
B D                Marmoset  cgg
B D                   Horse  cgg
B D        White rhinoceros  cgg
B D                  Rabbit  ===
B D                    Pika  ===
B D               Armadillo  ===
B D                   Panda  ===
              Prairie vole  ===
B D                     Rat  ===
B D                   Mouse  ===
B D         Chinese hamster  ===
    Lesser Egyptian jerboa  ===
             Domestic goat  ===
B D                     Cow  ===
B D                   Sheep  ===
          Tibetan antelope  ===
              Killer whale  ===
B D                  Alpaca  ===
           Star-nosed mole  ===
B D                 Ferret   ===
B D                Squirrel  ===
          Black flying-fox  ===
B D                     Cat  ===
B D                 Manatee  ===
B D                Elephant  ===
            Bactrian camel  ===
B D                 Opossum  ===
B D                Bushbaby  ===
B D                     Dog  ===
          Brush-tailed rat  ===
        Chinese tree shrew  ===
                Chinchilla  ===
B D                     Pig  ---
              Weddell seal  ===
B D                 Dolphin  ===
B D                 Megabat  ===
B D              Guinea pig  ===
B D          Naked mole-rat  ===
B D         Squirrel monkey  ---
B D                  Gibbon  NNN

Inserts between block 30 and 31 in window
B D                  Horse 26bp
B D       White rhinoceros 63bp

Alignment block 31 of 224 in window, 45122488 - 45122511, 24 bps 
B D                   Human  agcacacacagagaggacccccat--
B D                   Chimp  agcacacacagagaggacccccat--
B D                 Gorilla  agcacacacacagaggacccccat--
B D               Orangutan  agcacacacagagaggacccccat--
B D                  Rhesus  agcacacacagagaggacccccat--
B D     Crab-eating macaque  agcacacacagagaggacccccat--
B D                  Baboon  agcacacacagagaggacccccat--
B D            Green monkey  tgcacacacagagaggacccccat--
B D                Marmoset  agcacatgcagagaggacccccccat
B D                  Rabbit  ==========================
B D                    Pika  ==========================
B D               Armadillo  ==========================
B D        White rhinoceros  ==========================
B D                   Panda  ==========================
              Prairie vole  ==========================
B D                     Rat  ==========================
B D                   Mouse  ==========================
B D         Chinese hamster  ==========================
    Lesser Egyptian jerboa  ==========================
             Domestic goat  ==========================
B D                     Cow  ==========================
B D                   Sheep  ==========================
          Tibetan antelope  ==========================
              Killer whale  ==========================
B D                  Alpaca  ==========================
           Star-nosed mole  ==========================
B D                 Ferret   ==========================
B D                   Horse  ==========================
B D                Squirrel  ==========================
          Black flying-fox  ==========================
B D                     Cat  ==========================
B D                 Manatee  ==========================
B D                Elephant  ==========================
            Bactrian camel  ==========================
B D                 Opossum  ==========================
B D                Bushbaby  ==========================
B D                     Dog  ==========================
          Brush-tailed rat  ==========================
        Chinese tree shrew  ==========================
                Chinchilla  ==========================
B D                     Pig  --------------------------
              Weddell seal  ==========================
B D                 Dolphin  ==========================
B D                 Megabat  ==========================
B D              Guinea pig  ==========================
B D          Naked mole-rat  ==========================
B D         Squirrel monkey  --------------------------
B D                  Gibbon  NNNNNNNNNNNNNNNNNNNNNNNNNN

Alignment block 32 of 224 in window, 45122512 - 45123202, 691 bps 
B D                   Human  tcaaaatgtctctgctttatcatggactctc-------ccaaggctgtggcttcgtgttttcgaggctct
B D                   Chimp  tcgaaatgtctctgctttatcatggactctc-------ccaaggctgtggcctcgtgttttcgaggctct
B D                 Gorilla  tcgaaatgcctctgctttatcatggactctc-------ccaaggctgtggcctcatgttttcgaggctct
B D               Orangutan  tcgaaatgtctctgctttatcatggactctc-------ccaaggctgtggccttgtgttttcgaggctct
B D                  Gibbon  tcgaaatgtctctgctttatcatggactctc-------ccaaggctgtggcctcgtgttttcgaggctgt
B D                  Rhesus  tcaaaatgtctctgctttatcatggactttc-------ccaaggctgtggcctcgtattttcgaggctct
B D     Crab-eating macaque  tcaaaatgtctctgctttatcatggactctc-------ccaaggctgtggcctcgtattttcgaggctct
B D                  Baboon  tcaaaacgtctctgctttatcatggactctc-------ccaaggctgttacctcgtattttcgaggctct
B D            Green monkey  tcaaaacgtctctgctttatcatggactctc-------ccaaggctgttacctcgtgttttcgaggctct
B D                Marmoset  ccaaaatgtctccgctgcatcatggactctcccagcctccagggctgtgtccttgtgtccttgaggctgt
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                   Horse  ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                Bushbaby  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
B D                     Pig  ----------------------------------------------------------------------
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ----------------------------------------------------------------------

                      Human  catctggacttgatccaattcgagccactcctcaagtgcagccacagaacacggggaggctggtg--att
                      Chimp  catctggacttgatccaattcgagccactcctcaaatgcagccacagaacacggggaggctggtg--g-t
                    Gorilla  catctggacttgatccaattcgagccactcctcaaatgcagccacagaacatggggaggctggtg--gtt
                  Orangutan  catctggacttgatccaattcgagccactcctcaaatgcagccacagaacacggggaggctggtg--gtt
                     Gibbon  catctggacttgatccaattcgagccactcctcaaatgcagccacagaacagggggaggctggtg--ggt
                     Rhesus  catctggacttgatccaattcgagccacttctcaaatgcagccacagaacactgggaggctggtgttttt
        Crab-eating macaque  catctggacttgatccaattcgagccacttctcaaatgcagccacagaacactgggagcctggtg-tttt
                     Baboon  catctggacttgatccaattccagccacttctcaaatgcagccacagaacactgggaggctggtg--gtt
               Green monkey  catctggacttgatccaattcgagccacttctcaaatgcagccacagaacactgggaggctggtg--ttt
                   Marmoset  catctggacttgatccgattcaagccactcctcaaacgcagccacagaactct-ggaggttgttg--g-t
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ----------------------------------------------------------------------
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  tttttgagtacagctcctttcttcttgctgcttaagctcaatcatttgattttcttctttctgctgagac
                      Chimp  tttttgagtacagctcctttcttcttgctgcttaagctcaatcatttgattttcttctttctgctgagac
                    Gorilla  tttttgagtacagctcctttcttcttgctgcttaagctcaatcatttgattttcttctttctgctgagac
                  Orangutan  tttttgagtacagctcctttcttcttgctgcttaagctcaatcatttgattttcttctttctgctgagac
                     Gibbon  tttttgagtacagctcctttcttcttgctgcttaagctcaatcatttgattttcttctttctgctgagac
                     Rhesus  tttttgagtacagctcctttcttcttgctgcttaagctcaatcatttgattttcttctttctgctgagac
        Crab-eating macaque  tttttgagtacagctcctttcttcttgctgcttaagctcaatcatttgattttcttctttctgctgagac
                     Baboon  tttttgagtacagctcttttcttcttgctgcttaagctcaatcatttgattttcttctttctgctgagac
               Green monkey  tttttgagtacagctcc---cttcttgctgcttaagctcaatcatttgattttcttctttctgctgagac
                   Marmoset  gtttcggatacagatcctttcttcttgctgcttaagctcaatcatttgattttcttctttctactgagac
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ----------------------------------------------------------------------
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  ccttggcccctggtgagctaactggattcctctcgacccccaagccaggagcacagccagggtgtagaaa
                      Chimp  ccttggtccctggtgagctaactggattcctctcgacccccaagccaggagcacagccagggtgtagaaa
                    Gorilla  ccttggcccctggtgagctaactggattcctcttgacccccaagccaggagcacagccagggtgtagaaa
                  Orangutan  ccttggcccctggtgagctaactggattcctctcgacccccaagccaggagcacagccagggtgtagaaa
                     Gibbon  ccttggaccctggtgagctaactggattcttctcgacccccaagccaggagcacagccagggtgtagaaa
                     Rhesus  ccttggcccctggtgggctaactggattcctctcaactcccaagccaggaacacagccagggtgtagaaa
        Crab-eating macaque  ccttggcccctggtgggctaactggattcctctcaactcccaagccaggaacacagccagggtgtagaaa
                     Baboon  ccttggcccctggtgggctaactggattcctctcaactcccaagccaggaacacagccagggtgtagaaa
               Green monkey  ccttggcccctggtgggctaactggattcctctcaactcccaagccaggaacacagccagggtgtagaaa
                   Marmoset  ccttgg--cctggtgggctaactggattcctctggact-ccaagacagtagcacagcaaggg-gcagaaa
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ----------------------------------------------------------------------
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  gtgtttggagaaagaaaatccca-ctagaggcgttttagacaaattttttcaaacatgtgaaaaagcagc
                      Chimp  gtgtttggagaaagaaaatccca-ctagaggcgttttagacaaattttctcaaac--gtgaaaaagcagc
                    Gorilla  gtgtttggagaaagaaaatccca-ctagaggcgttttagacaaattttctcaaacatgtgaaaaagcagc
                  Orangutan  gtgtttggagaaagaaaatccca-ctagaggcgttttagacaaattttctcaaacatatgaaaacgcagc
                     Gibbon  gtgtttggagaaagaaaatccca-ctagaggcgttttagacaaattttctcaaacatgtgaaaaagcagc
                     Rhesus  atgtttggagaaagaaaatccca-ctagaggcgttttagacaaacgttcttgaacatgtgaaaaagcatc
        Crab-eating macaque  atgtttggagaaagaaaatccca-ctagaggcgttttagacaaacgttcttgaacatgtgaaaaagcatc
                     Baboon  atgtttggagaaagaaaatccca-ctagaggtgttttagacaaatgttctcaaacatgtgaaaaagcatc
               Green monkey  atgtttggagaaagaaaatccca-ctagaggcgttttagacaaattttctcaaacatgtgaaaaagcatc
                   Marmoset  gtgtttggagaacggaaatcctagctagaggcatttaagacagattttctcaaacgtgtgaaaaag-aac
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ----------------------------------------------------------------------
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  ctagagttgaggagaataaaaaccccttctttcaagttgccttgtataccgtgttcagcttttttgttgc
                      Chimp  ctagagttgaggagaataaaaaccccttctttcaagttgccttgtgtaccgtgttcagcttttttgttgc
                    Gorilla  ctagagttgaggagaataaaaaccccttctttcaagttgcgttgtgtaccatgttcatcttttttgttgc
                  Orangutan  ctagagttgaggagaataaaaatcccttctttcaagttgccttgtgtatcatgttcagcttttttgttgc
                     Gibbon  ctagagtcgaggagaataaaaaccccttctttcaagttgccttgtgtatcatgttcagcttttttgttgc
                     Rhesus  ctagagtcgaggtgaataaaaaccc---ctttcaagttgccttgtgtatcacgttcagcttttttgttgc
        Crab-eating macaque  ctagagtcgaggtgaataaaaaccc---ctttcaagttgccttgtgtatcacgttcagcttttttgttgc
                     Baboon  ctagagtcgaggagaataaaaaccc---ctttcaagttgccttgtgtatcacgttcagcttttttgttgc
               Green monkey  ctagagtcgaggagatcaaaaaccc---ctttcaagttgccttgtgtatcacgttcagcttttttgttgc
                   Marmoset  ctagagtcaaggggactctaaacccct-ctttcaagttgccttgtatgtcacattcggc-tttatgttgc
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ----------------------------------------------------------------------
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  taaaagataattttcaaa-aaagggaaaaatcatgactcttctatacaatagatacaaagtgaacaaggg
                      Chimp  taaaagataattttcaaa-aaagggaaaaatcatgactcttctatacaatagatacaaagtgaacaaggg
                    Gorilla  taaaagataattttcaaagaaggggaaaagtcatgactcttctatacaatagatacaaagtgaacaaggg
                  Orangutan  taaaagataattttcaaa-aaagggaaaaatcatgactcttctgtacaatagatacaaagtgaacaaggg
                     Gibbon  taaaagataattttcaaa-aaagggaaaaatcacgactcttctgtacaatagatacaaagtgaacaaggg
                     Rhesus  taaaagataattttc-aa-aaagggaaaaatcatgactcttctataccacagatacaaagtgaacaaggg
        Crab-eating macaque  taaaagataattttc-aa-aaagggaaaaatcatgacttttctataccacagatacaaagtgaacaaggg
                     Baboon  taaaagataattttcaaa-aaagggaaaaatcatgactcttctctacaacagatacaaagtgaacaaggg
               Green monkey  taaaagataattttc-aa-aaagggaaacatcatgactcttctataccacagatacaaagtgaacaaggg
                   Marmoset  tgaaagatacttttcaaa-agagggaaaaatcatgacttt--tatataatgggtacaaagtggacaaggg
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ----------------------------------------------------------------------
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  acaagagatttaatttaactctagagggatcaggctcaaaccaaagagcagacacaggtacaggttag-g
                      Chimp  acaggagatttaatttaactctagagggatcaggctcaaaccaaagagcagacacaggtacaggttag-g
                    Gorilla  acaagagatttaatttaactctagagggatcaggctcaaaccaaagagcagacacaggtacaggttag-a
                  Orangutan  acaagagatttcatttaactctagagggatcaggctcaaaccaaagagccgacacaggtacaggttag-g
                     Gibbon  acaagagatttaatttaactctagagggatcaggctcaaaccagagagcagacataggtacaggttag-g
                     Rhesus  acaagagatttaacttaactcgagagggatcaggctcaaaccaaaaagcagacacaggtacaggttag-g
        Crab-eating macaque  acaagagatttaacttaactcgagagggatcaggctcaaaccaaaaagcagacacaggtacaggttag-g
                     Baboon  ataagagatttaacttaactcgagagggatcaggctcaaaccaaagagcagacacaggtacaggttag-g
               Green monkey  acaagagatttaacttaactcgagagggatcgggctcaaaccaaaaagcagacacaggtacaggttag-g
                   Marmoset  gcaagagatctgatttaacttgagagagatcaggcccaaaacaaagagcagacacaggaacaggttagaa
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ----------------------------------------------------------------------
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  acgatgaaactgctatacgaatggagacagaactgtttcctctgtgtgagagtaagtgtgcatcctgtgt
                      Chimp  acgatgaaactgctatacgaatggagacagaactgtttcctctgtgtcagagtaagtgtgcatcctgtgt
                    Gorilla  acgatgaaaccaccatacgaatggagacagaactgtttcctctgtgtgagagtaagtgtgcatcctgtgt
                  Orangutan  acgatgaaaccgtcatacgaatggagacagaactgtttcctctgtgtgagagtaagtgtgcatcctgtgt
                     Gibbon  acgatgaaagcgccatactaatggagacagaaccgtttcctctgtgtgagagtaagtgtgcatcctgtgt
                     Rhesus  acgatgaaaccgctatacgaatggagacagaactgtttcctctgtgtgagagaaagggtgcatcctgtgt
        Crab-eating macaque  acgatgaaacagctatatgaatggagacagaactgtttcctctgtgtgagagaaagggtgcatcctgtgt
                     Baboon  acgatgaaaccgctatatgaatggagacagaactgtttcctctgtgtgagagaaagggtgcatcctgtgt
               Green monkey  acgatgaaaccgatatatgaatggagacagaactgtttcctctgtgtgagagaaagggtgcatcctgtgt
                   Marmoset  acgatgga------------------gcacaactgtctcctctgcacgagaggaagggcacatcctgtgt
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ----------------------------------------------------------------------
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  gcgacagaggggctggagcttggtgccgacaggcactggccattagcgatcctcccagccgctcaacagg
                      Chimp  gcgacagaggggctggagctgggtgccgacaggcgctggccattagcgatcctcccagccgctgaacagg
                    Gorilla  gcgacagaggggctggagctgggtgccgacaggcactggccattggcgatcctgccagccgctcaacagg
                  Orangutan  gtgacagaggggctggagctgggtgccgacaggcactggccattggcgatcctcccagccactcaacagg
                     Gibbon  gcgacagaggggctggagctgggtgccgacaggcactggccattggcgctcctcccagccactcaacagg
                     Rhesus  gcgacagaggggcaggagctgggtgccaaccggcactggccattggctctcctcccagccgctcaacagg
        Crab-eating macaque  gcgacagaggggcaggagctgggtgccaaccggcactggccattggctctcctcccagccgctcaacagg
                     Baboon  gcgacagaggggtaggagctgggtgccaaccggcactggccattggctctcctcccagccgctcaacagg
               Green monkey  gcgacagaggggcaggagctgggtgccaaccggcactggccattggctctcctcccagccactcaacagg
                   Marmoset  gcgacagaggggctggagctgggtgccgacaggcgctggccattggcactcctcccagtggctcaacagg
                     Rabbit  ======================================================================
                       Pika  ======================================================================
                  Armadillo  ======================================================================
           White rhinoceros  ======================================================================
                      Panda  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
                      Mouse  ======================================================================
            Chinese hamster  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
              Domestic goat  ======================================================================
                        Cow  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
               Killer whale  ======================================================================
                     Alpaca  ======================================================================
            Star-nosed mole  ======================================================================
                    Ferret   ======================================================================
                      Horse  ======================================================================
                   Squirrel  ======================================================================
           Black flying-fox  ======================================================================
                        Cat  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
             Bactrian camel  ======================================================================
                    Opossum  ======================================================================
                   Bushbaby  ======================================================================
                        Dog  ======================================================================
           Brush-tailed rat  ======================================================================
         Chinese tree shrew  ======================================================================
                 Chinchilla  ======================================================================
                        Pig  ----------------------------------------------------------------------
               Weddell seal  ======================================================================
                    Dolphin  ======================================================================
                    Megabat  ======================================================================
                 Guinea pig  ======================================================================
             Naked mole-rat  ======================================================================
            Squirrel monkey  ----------------------------------------------------------------------

                      Human  cct
                      Chimp  cct
                    Gorilla  cct
                  Orangutan  cct
                     Gibbon  cct
                     Rhesus  cct
        Crab-eating macaque  cct
                     Baboon  cct
               Green monkey  cct
                   Marmoset  cct
                     Rabbit  ===
                       Pika  ===
                  Armadillo  ===
           White rhinoceros  ===
                      Panda  ===
               Prairie vole  ===
                        Rat  ===
                      Mouse  ===
            Chinese hamster  ===
     Lesser Egyptian jerboa  ===
              Domestic goat  ===
                        Cow  ===
                      Sheep  ===
           Tibetan antelope  ===
               Killer whale  ===
                     Alpaca  ===
            Star-nosed mole  ===
                    Ferret   ===
                      Horse  ===
                   Squirrel  ===
           Black flying-fox  ===
                        Cat  ===
                    Manatee  ===
                   Elephant  ===
             Bactrian camel  ===
                    Opossum  ===
                   Bushbaby  ===
                        Dog  ===
           Brush-tailed rat  ===
         Chinese tree shrew  ===
                 Chinchilla  ===
                        Pig  ---
               Weddell seal  ===
                    Dolphin  ===
                    Megabat  ===
                 Guinea pig  ===
             Naked mole-rat  ===
            Squirrel monkey  ---

Alignment block 33 of 224 in window, 45123203 - 45123270, 68 bps 
B D                   Human  gtgtcactgcaca-agtcaagtgcagttccctggggccgcagggatctggccagg--tgtg---agttcc
B D                   Chimp  gtgtcaccgcaca-agtcaagtgcagttccctggggccgcggggatctggccagg--tgtg---agttcc
B D                 Gorilla  gtgtcactgcaca-agccaagtgcagttccctggggcctcagggatctggccagg--tgtg---agttcc
B D               Orangutan  gtgtcactgcaca-agccaagtgaagttccctggggctgcagggatctggccagg--tgtg---agttcc
B D                  Gibbon  gtgtcactgcaca-agccaagtgcagttccctggggccgcagggatctggccagg--tgtg---agttcc
B D                  Rhesus  gtgtcactgcaca-agccaagtgcagttccctggggctgcagggacttggccaggtatgtg---agttcc
B D     Crab-eating macaque  gtgtcactgcaca-agccaagtgcagttccctggggctgcagggacttggccaggtatgtg---agttcc
B D                  Baboon  gtgtcactgcaca-agccaagtgcagttccctggggctgcagggacttggccaggtatgtg---agttcc
B D            Green monkey  gtgtcactgcaca-agccaagtgcagttccctg--------gggacttggccaggtgtgtg---agttcc
B D                Marmoset  gtgtcactgcaca-agccaagtgcagttccctggggctgcagggacttggccaggtgtgtg---agttcc
B D                   Horse  gtctcgttgcacatggccagctgcagtccc---------------------------tgtgtctggttcc
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
B D                  Alpaca  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
            Bactrian camel  ======================================================================
B D                 Opossum  ======================================================================
B D                Bushbaby  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
B D                     Pig  ----------------------------------------------------------------------
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ----------------------------------------------------------------------

                      Human  caca
                      Chimp  caca
                    Gorilla  caca
                  Orangutan  caca
                     Gibbon  caca
                     Rhesus  caca
        Crab-eating macaque  caca
                     Baboon  caca
               Green monkey  caca
                   Marmoset  caca
                      Horse  tgca
                     Rabbit  ====
                       Pika  ====
                  Armadillo  ====
           White rhinoceros  ====
                      Panda  ====
               Prairie vole  ====
                        Rat  ====
                      Mouse  ====
            Chinese hamster  ====
     Lesser Egyptian jerboa  ====
              Domestic goat  ====
                        Cow  ====
                      Sheep  ====
           Tibetan antelope  ====
               Killer whale  ====
                     Alpaca  ====
            Star-nosed mole  ====
                    Ferret   ====
                   Squirrel  ====
           Black flying-fox  ====
                        Cat  ====
                    Manatee  ====
                   Elephant  ====
             Bactrian camel  ====
                    Opossum  ====
                   Bushbaby  ====
                        Dog  ====
           Brush-tailed rat  ====
         Chinese tree shrew  ====
                 Chinchilla  ====
                        Pig  ----
               Weddell seal  ====
                    Dolphin  ====
                    Megabat  ====
                 Guinea pig  ====
             Naked mole-rat  ====
            Squirrel monkey  ----

Alignment block 34 of 224 in window, 45123271 - 45123272, 2 bps 
B D                   Human  ca
B D                   Chimp  ca
B D                 Gorilla  ca
B D               Orangutan  ca
B D                  Gibbon  ca
B D                  Rhesus  ca
B D     Crab-eating macaque  ca
B D                  Baboon  ca
B D            Green monkey  ca
B D                Marmoset  ca
B D                  Alpaca  ca
             Bactrian camel  ca
B D                   Horse  ct
B D                  Rabbit  ==
B D                    Pika  ==
B D               Armadillo  ==
B D        White rhinoceros  ==
B D                   Panda  ==
              Prairie vole  ==
B D                     Rat  ==
B D                   Mouse  ==
B D         Chinese hamster  ==
    Lesser Egyptian jerboa  ==
             Domestic goat  ==
B D                     Cow  ==
B D                   Sheep  ==
          Tibetan antelope  ==
              Killer whale  ==
           Star-nosed mole  ==
B D                 Ferret   ==
B D                Squirrel  ==
          Black flying-fox  ==
B D                     Cat  ==
B D                 Manatee  ==
B D                Elephant  ==
B D                 Opossum  ==
B D                Bushbaby  ==
B D                     Dog  ==
          Brush-tailed rat  ==
        Chinese tree shrew  ==
                Chinchilla  ==
B D                     Pig  --
              Weddell seal  ==
B D                 Dolphin  ==
B D                 Megabat  ==
B D              Guinea pig  ==
B D          Naked mole-rat  ==
B D         Squirrel monkey  --

Inserts between block 34 and 35 in window
B D                  Horse 12bp

Alignment block 35 of 224 in window, 45123273 - 45123385, 113 bps 
B D                   Human  gccatcttctt-gg-gtgcctgatggccaacactgtggaccctg---------------aaatgaccagc
B D                   Chimp  gccatcttctt-gg-gtgcctgatggccaacactgtggaccctg---------------aaatgaccagc
B D                 Gorilla  gccatcttctt-gg-gtgcctgatggccaacaccgtggaccctg---------------aaatgaccagc
B D               Orangutan  gccatcttctt-gg-gtgcctgatggccaacattgtggaccctg---------------aaatgaccagc
B D                  Gibbon  gccatcttctt-gg-gtgcctgatggccaacattgtggaccctg---------------aaatgaccagc
B D                  Rhesus  gccatcttctt-gg-gtgcctgatggccaacattgtggacgctg---------------aaatgaccagc
B D     Crab-eating macaque  gccatcttctt-gg-gtgcctgatggccaacattgtggacgctg---------------aaatgaccagc
B D                  Baboon  gccatcttctt-gg-gtgcctgatgggcaacattgtggatgctg---------------aaatgaccagc
B D            Green monkey  gccatcttcct-gg-gtgcctgatggccaacattgtggaccctg---------------aaatgaccagc
B D                Marmoset  gccatcttcctggg-gtgcctgatagctaacatcgtggacccca---------------aaatgaccagc
B D                  Alpaca  gctgtcatcct-gaagcactggatggccagcatcctggagctggtggcaacgtcgccctcgatgaccagc
             Bactrian camel  gctgtcatcct-gaagcaccggatggccagcatcctggagctggtggcaacgtcgccctcgatgaccagc
B D                   Horse  gctgtcctcct-ggagcttctgctggctaacatcctggagccggcggcaatgccgcccttaatgaccagc
B D        White rhinoceros  gctgtcctcct-ggagctctcgatggccaacatcctggagctggcagcaatgtagtccttgatgaccacc
B D                  Rabbit  ======================================================================
B D                    Pika  ======================================================================
B D               Armadillo  ======================================================================
B D                   Panda  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D                   Mouse  ======================================================================
B D         Chinese hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
             Domestic goat  ======================================================================
B D                     Cow  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
              Killer whale  ======================================================================
           Star-nosed mole  ======================================================================
B D                 Ferret   ======================================================================
B D                Squirrel  ======================================================================
          Black flying-fox  ======================================================================
B D                     Cat  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D                 Opossum  ======================================================================
B D                Bushbaby  ======================================================================
B D                     Dog  ======================================================================
          Brush-tailed rat  ======================================================================
        Chinese tree shrew  ======================================================================
                Chinchilla  ======================================================================
B D                     Pig  ----------------------------------------------------------------------
              Weddell seal  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Megabat  ======================================================================
B D              Guinea pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D         Squirrel monkey  ----------------------------------------------------------------------

                      Human  agag-ctgcatgtcctgttgtgtgaggc-agccgtgtgtggacacagagctcagtgtctc--tg
                      Chimp  agag-ctgcatgtcctgttgtgtgaggc-agccgtgtgtggacacagagctcagtgtctc--tg
                    Gorilla  agag-ctgcatgtcctgttgtgtgaggc-agccgtgtgtggacacagagctcagtgtctc--tg
                  Orangutan  agag-ctgcatgtcctgttgtgtgaggc-agccgtgtgtggacacagagctcagtgtctc--tg
                     Gibbon  agag-ctgcatgtcctattgtgtgaggc-agccgtgtgtggacacagagctcactgcctc--tg
                     Rhesus  agag-ctgcatgtgctgttgtgtgtggc-agctgtgtgtgaacgcagagctcagtgcccc--tg
        Crab-eating macaque  agag-ctgcatgtgctgttgtgtgtggc-agctgtgtgtgaacgcagagctcagtgcccc--tg
                     Baboon  agag-ctgcatgtgctgttgtatgtggc-agctgtgtgtgaacacagagctcagtgcccc--tg
               Green monkey  agag-ctgcatgccctgttgtgtgtggc-agctgtgtgtgaacacagagctcagtgcctc--cg
                   Marmoset  aaaa-ctgcatgatctgttgggtgcggc-agccgtgagtggacacagaattgagttcctc--tg
                     Alpaca  agag-ctgcatcacttgccatgtgcagctggctgtgtgtggacacagagttcagtgcctc----
             Bactrian camel  agag-ctacatcacttgccatgtgcagctggctgtgtgtggacacagagttcagtgcctc----
                      Horse  agaacccgcatcacctgctacgtgctgctggccatgtgtggatgcagagctcagcacccc----
           White rhinoceros  agag-ccgcatcacctgccacgtgctgccagccatgtgtggacgcagagctcagcgcccctg--
                     Rabbit  ================================================================
                       Pika  ================================================================
                  Armadillo  ================================================================
                      Panda  ================================================================
               Prairie vole  ================================================================
                        Rat  ================================================================
                      Mouse  ================================================================
            Chinese hamster  ================================================================
     Lesser Egyptian jerboa  ================================================================
              Domestic goat  ================================================================
                        Cow  ================================================================
                      Sheep  ================================================================
           Tibetan antelope  ================================================================
               Killer whale  ================================================================
            Star-nosed mole  ================================================================
                    Ferret   ================================================================
                   Squirrel  ================================================================
           Black flying-fox  ================================================================
                        Cat  ================================================================
                    Manatee  ================================================================
                   Elephant  ================================================================
                    Opossum  ================================================================
                   Bushbaby  ================================================================
                        Dog  ================================================================
           Brush-tailed rat  ================================================================
         Chinese tree shrew  ================================================================
                 Chinchilla  ================================================================
                        Pig  ----------------------------------------------------------------
               Weddell seal  ================================================================
                    Dolphin  ================================================================
                    Megabat  ================================================================
                 Guinea pig  ================================================================
             Naked mole-rat  ================================================================
            Squirrel monkey  ----------------------------------------------------------------

Inserts between block 35 and 36 in window
B D                Gorilla 1bp
B D       White rhinoceros 9424bp

Alignment block 36 of 224 in window, 45123386 - 45123386, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D                  Alpaca  t
             Bactrian camel  t
B D                   Horse  t
B D                  Rabbit  =
B D                    Pika  =
B D               Armadillo  =
B D        White rhinoceros  =
B D                   Panda  =
              Prairie vole  =
B D                     Rat  =
B D                   Mouse  =
B D         Chinese hamster  =
    Lesser Egyptian jerboa  =
             Domestic goat  =
B D                     Cow  =
B D                   Sheep  =
          Tibetan antelope  =
              Killer whale  =
           Star-nosed mole  =
B D                 Ferret   =
B D                Squirrel  =
          Black flying-fox  =
B D                     Cat  =
B D                 Manatee  =
B D                Elephant  =
B D                 Opossum  =
B D                Bushbaby  =
B D                     Dog  =
          Brush-tailed rat  =
        Chinese tree shrew  =
                Chinchilla  =
B D                     Pig  -
              Weddell seal  =
B D                 Dolphin  =
B D                 Megabat  =
B D              Guinea pig  =
B D          Naked mole-rat  =
B D         Squirrel monkey  -

Alignment block 37 of 224 in window, 45123387 - 45123408, 22 bps 
B D                   Human  ggggtg----gtgactgtcttccagg
B D                   Chimp  ggggtg----gcgactgtcttccagg
B D                 Gorilla  ggggtg----gcgactgtcttccagg
B D               Orangutan  ggggtg----gcgactaccttccagg
B D                  Gibbon  ggggtg----gcgactgtcttccagg
B D                  Rhesus  ggggtg----gtgactgtcttccagg
B D     Crab-eating macaque  ggggtg----gtgactgtcttccagg
B D                  Baboon  ggggtg----gtgactgtcttccagg
B D            Green monkey  ggggtg----gtgactgtcttccaga
B D                Marmoset  ggggtg----gtgactgtcttccagg
B D                  Alpaca  gggttg----ttgaccacatcccagg
             Bactrian camel  gggatg----gtggccacatcccggg
B D                   Horse  ggggtg----ttcactgtctcctggg
B D        White rhinoceros  ggggtgggactgcatgttttactgga
B D                  Rabbit  ==========================
B D                    Pika  ==========================
B D               Armadillo  ==========================
B D                   Panda  ==========================
              Prairie vole  ==========================
B D                     Rat  ==========================
B D                   Mouse  ==========================
B D         Chinese hamster  ==========================
    Lesser Egyptian jerboa  ==========================
             Domestic goat  ==========================
B D                     Cow  ==========================
B D                   Sheep  ==========================
          Tibetan antelope  ==========================
              Killer whale  ==========================
           Star-nosed mole  ==========================
B D                 Ferret   ==========================
B D                Squirrel  ==========================
          Black flying-fox  ==========================
B D                     Cat  ==========================
B D                 Manatee  ==========================
B D                Elephant  ==========================
B D                 Opossum  ==========================
B D                Bushbaby  ==========================
B D                     Dog  ==========================
          Brush-tailed rat  ==========================
        Chinese tree shrew  ==========================
                Chinchilla  ==========================
B D                     Pig  --------------------------
              Weddell seal  ==========================
B D                 Dolphin  ==========================
B D                 Megabat  ==========================
B D              Guinea pig  ==========================
B D          Naked mole-rat  ==========================
B D         Squirrel monkey  --------------------------

Inserts between block 37 and 38 in window
B D                 Alpaca 3023bp
            Bactrian camel 3026bp

Alignment block 38 of 224 in window, 45123409 - 45123412, 4 bps 
B D                   Human  gaca
B D                   Chimp  gaca
B D                 Gorilla  gaca
B D               Orangutan  gaca
B D                  Gibbon  gaca
B D                  Rhesus  gaca
B D     Crab-eating macaque  gaca
B D                  Baboon  gaca
B D            Green monkey  gaca
B D                Marmoset  gaca
B D                  Rabbit  ====
B D                    Pika  ====
B D               Armadillo  ====
B D        White rhinoceros  ----
B D                   Panda  ====
              Prairie vole  ====
B D                     Rat  ====
B D                   Mouse  ====
B D         Chinese hamster  ====
    Lesser Egyptian jerboa  ====
             Domestic goat  ====
B D                     Cow  ====
B D                   Sheep  ====
          Tibetan antelope  ====
              Killer whale  ====
B D                  Alpaca  ====
           Star-nosed mole  ====
B D                 Ferret   ====
B D                   Horse  ----
B D                Squirrel  ====
          Black flying-fox  ====
B D                     Cat  ====
B D                 Manatee  ====
B D                Elephant  ====
            Bactrian camel  ====
B D                 Opossum  ====
B D                Bushbaby  ====
B D                     Dog  ====
          Brush-tailed rat  ====
        Chinese tree shrew  ====
                Chinchilla  ====
B D                     Pig  ----
              Weddell seal  ====
B D                 Dolphin  ====
B D                 Megabat  ====
B D              Guinea pig  ====
B D          Naked mole-rat  ====
B D         Squirrel monkey  ----

Alignment block 39 of 224 in window, 45123413 - 45123416, 4 bps 
B D                   Human  taat
B D                   Chimp  taat
B D                 Gorilla  taat
B D               Orangutan  taat
B D                  Gibbon  taat
B D                  Rhesus  taat
B D     Crab-eating macaque  taat
B D                  Baboon  taat
B D            Green monkey  taat
B D                Marmoset  taat
B D                   Horse  -ggt
B D        White rhinoceros  -ggt
B D                 Manatee  tgag
B D                  Rabbit  ====
B D                    Pika  ====
B D               Armadillo  ====
B D                   Panda  ====
              Prairie vole  ====
B D                     Rat  ====
B D                   Mouse  ====
B D         Chinese hamster  ====
    Lesser Egyptian jerboa  ====
             Domestic goat  ====
B D                     Cow  ====
B D                   Sheep  ====
          Tibetan antelope  ====
              Killer whale  ====
B D                  Alpaca  ====
           Star-nosed mole  ====
B D                 Ferret   ====
B D                Squirrel  ====
          Black flying-fox  ====
B D                     Cat  ====
B D                Elephant  ====
            Bactrian camel  ====
B D                 Opossum  ====
B D                Bushbaby  ====
B D                     Dog  ====
          Brush-tailed rat  ====
        Chinese tree shrew  ====
                Chinchilla  ====
B D                     Pig  ----
              Weddell seal  ====
B D                 Dolphin  ====
B D                 Megabat  ====
B D              Guinea pig  ====
B D          Naked mole-rat  ====
B D         Squirrel monkey  ----

Inserts between block 39 and 40 in window
B D                  Horse 5bp
B D       White rhinoceros 1bp

Alignment block 40 of 224 in window, 45123417 - 45123418, 2 bps 
B D                   Human  at
B D                   Chimp  at
B D                 Gorilla  at
B D               Orangutan  at
B D                  Gibbon  at
B D                  Rhesus  at
B D     Crab-eating macaque  at
B D                  Baboon  at
B D            Green monkey  at
B D                Marmoset  gt
B D                Squirrel  ac
B D                   Horse  gt
B D                 Manatee  ac
B D                  Rabbit  ==
B D                    Pika  ==
B D               Armadillo  ==
B D        White rhinoceros  ==
B D                   Panda  ==
              Prairie vole  ==
B D                     Rat  ==
B D                   Mouse  ==
B D         Chinese hamster  ==
    Lesser Egyptian jerboa  ==
             Domestic goat  ==
B D                     Cow  ==
B D                   Sheep  ==
          Tibetan antelope  ==
              Killer whale  ==
B D                  Alpaca  ==
           Star-nosed mole  ==
B D                 Ferret   ==
          Black flying-fox  ==
B D                     Cat  ==
B D                Elephant  ==
            Bactrian camel  ==
B D                 Opossum  ==
B D                Bushbaby  ==
B D                     Dog  ==
          Brush-tailed rat  ==
        Chinese tree shrew  ==
                Chinchilla  ==
B D                     Pig  --
              Weddell seal  ==
B D                 Dolphin  ==
B D                 Megabat  ==
B D              Guinea pig  ==
B D          Naked mole-rat  ==
B D         Squirrel monkey  --

Alignment block 41 of 224 in window, 45123419 - 45123419, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D                Squirrel  t
     Lesser Egyptian jerboa  t
B D                   Horse  t
B D                 Manatee  t
B D                  Rabbit  =
B D                    Pika  =
B D               Armadillo  =
B D        White rhinoceros  =
B D                   Panda  =
              Prairie vole  =
B D                     Rat  =
B D                   Mouse  =
B D         Chinese hamster  =
             Domestic goat  =
B D                     Cow  =
B D                   Sheep  =
          Tibetan antelope  =
              Killer whale  =
B D                  Alpaca  =
           Star-nosed mole  =
B D                 Ferret   =
          Black flying-fox  =
B D                     Cat  =
B D                Elephant  =
            Bactrian camel  =
B D                 Opossum  =
B D                Bushbaby  =
B D                     Dog  =
          Brush-tailed rat  =
        Chinese tree shrew  =
                Chinchilla  =
B D                     Pig  -
              Weddell seal  =
B D                 Dolphin  =
B D                 Megabat  =
B D              Guinea pig  =
B D          Naked mole-rat  =
B D         Squirrel monkey  -

Inserts between block 41 and 42 in window
B D                  Horse 10479bp

Alignment block 42 of 224 in window, 45123420 - 45123435, 16 bps 
B D                   Human  ctaaacacccctgacc
B D                   Chimp  ctaaacacccctgacc
B D                 Gorilla  ctaaacacccctgacc
B D               Orangutan  ctaaacacccctgacc
B D                  Gibbon  ctaaacacccctgacc
B D                  Rhesus  ctaaacacccctgacc
B D     Crab-eating macaque  ctaaacacctctgacc
B D                  Baboon  ctaaacacccctgacc
B D            Green monkey  ctaaacacccctgacc
B D                Marmoset  ctaaacaccactgacc
B D                Squirrel  ttaaagaaggctgacc
     Lesser Egyptian jerboa  ctgcacagtgctgcct
B D                   Horse  ctaaacaaggctgcct
B D        White rhinoceros  ctgaacaaggctgcct
B D                 Manatee  ctgaaccatgcccact
B D                  Rabbit  ================
B D                    Pika  ================
B D               Armadillo  ================
B D                   Panda  ================
              Prairie vole  ================
B D                     Rat  ================
B D                   Mouse  ================
B D         Chinese hamster  ================
             Domestic goat  ================
B D                     Cow  ================
B D                   Sheep  ================
          Tibetan antelope  ================
              Killer whale  ================
B D                  Alpaca  ================
           Star-nosed mole  ================
B D                 Ferret   ================
          Black flying-fox  ================
B D                     Cat  ================
B D                Elephant  ================
            Bactrian camel  ================
B D                 Opossum  ================
B D                Bushbaby  ================
B D                     Dog  ================
          Brush-tailed rat  ================
        Chinese tree shrew  ================
                Chinchilla  ================
B D                     Pig  ----------------
              Weddell seal  ================
B D                 Dolphin  ================
B D                 Megabat  ================
B D              Guinea pig  ================
B D          Naked mole-rat  ================
B D         Squirrel monkey  ----------------

Alignment block 43 of 224 in window, 45123436 - 45123455, 20 bps 
B D                   Human  tagagcagcatccacactca
B D                   Chimp  tagagcagcatccacactca
B D                 Gorilla  tagagcagcatccacactca
B D               Orangutan  tagagcagcatccacactca
B D                  Gibbon  tacagcagcatccacacttg
B D