Multiz Alignments of 100 Vertebrates
 

Capitalize exons based on show bases
Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 147 in window, 63817073 - 63817111, 39 bps 
B D                     Human  ga-ttta----gg------gtct--------------------tc-----------------acg-ctgc
B D                     Chimp  ga-ttta----gg------gtct--------------------tc-----------------acg-ctgc
B D                   Gorilla  ga-ttta----gg------gtct--------------------tc-----------------acg-ctgc
B D                 Orangutan  ga-ttta----gg------gtct--------------------tc-----------------acg-ctgc
B D                    Gibbon  ga-ttta----gg------gtct--------------------tc-----------------acg-ctgc
B D                    Rhesus  ga-ttta----gg------gtct--------------------tc-----------------acg-ctgc
B D       Crab-eating macaque  ga-ttta----gg------gtct--------------------tc-----------------acg-ctgc
B D                    Baboon  ga-ttta----gg------gtct--------------------tc-----------------acg-ctgc
B D              Green monkey  ga-ttta----gg------gtct--------------------tc-----------------aca-ctgc
B D                  Marmoset  ga-ttta----gg------gtct--------------------tt-----------------aca-ctgc
B D           Squirrel monkey  ga-ttta----gg------gtct--------------------tc-----------------aca-ctgc
B D                  Bushbaby  gattttc----ag------gcct--------------------tc-----------------tca-ctgc
           Chinese tree shrew  ga-ttta----gg------gcct--------------------tc-----------------tca-ctgt
B D                  Squirrel  aa---ta----ag------gcct--------------------tt-----------------tca-ttgc
       Lesser Egyptian jerboa  aa-ttta----ga------tcct--------------------tt-----------------ccc-ttgt
B D           Chinese hamster  ga-ttta----ga------gcct--------------------tc-----------------tat-ttac
               Golden hamster  ga-ttta----ga------gcct--------------------tc-----------------tat-ttac
B D            Naked mole-rat  ca-ttta----gg------ccct--------------------tc-----------------tca-ttgc
B D                Guinea pig  ga-ttta----gg------ggtttccctttg------------tc-----------------aca-ttgc
                   Chinchilla  ag-tcca----aacagcacgcctcagtcttaaaaaaaaataggtc-----------------att-acac
             Brush-tailed rat  ga-ttta----gg------gcct--------------------tc-----------------ttt-ttac
B D                    Rabbit  ga-tttc----ag------ccct--------------------tc-----------------tct-tt-c
B D                      Pika  ga-tttc----ag------gtgt--------------------tc-----------------tct-tc-c
B D                       Pig  ga-tttaggtagg------gcct--------------------t-------------------cc-ccat
B D                    Alpaca  ga-tttaggtagg------gctt--------------------tc-----------------ccc-ccgc
               Bactrian camel  ga-tttcggtagg------gcct--------------------tc-----------------ccc-ccgc
B D                   Dolphin  ga-tttaggtagg------gcct--------------------t------------------ctc-ctgt
                 Killer whale  ga-tttaggtagg------gcct--------------------t------------------ctc-ctgt
             Tibetan antelope  gg-tttcctgagg------gcct--------------------t------------------ccg-ccat
B D                       Cow  ga-tttcccgagg------gcct--------------------t------------------ccc-ccat
B D                     Sheep  gg-tttcctgagg------gcct--------------------t------------------ccg-ccat
                Domestic goat  ga-tttcccgagg------gcct--------------------t------------------ccg-ccat
B D                     Horse  ga-ttta----gg------gtct--------------------tt-----------------tca-ctgc
B D          White rhinoceros  ga-ttta----gg------gcct--------------------tc-----------------tca-ctgc
B D                       Cat  ga-ttta----ga------gcct--------------------tc-----------------tca-ctgc
B D                       Dog  ga-ttta----gg------accc--------------------tc-----------------tca-cagc
B D                   Ferret   ga-ctta-----g------gcct--------------------cc-----------------tcagctgc
B D                     Panda  ga-ttta----gg------acct--------------------tc-----------------tca-ctgc
               Pacific walrus  ga-ctta----gg------gcct--------------------tc-----------------tca-ctgc
                 Weddell seal  ga-ctta----ag------gcct--------------------tc-----------------tca-ctgc
             Black flying-fox  ga-ttag-----g------gtct--------------------tc-----------------tca-ctgc
B D                   Megabat  aa-ttag-----g------gtct--------------------tcagttagggactgagaagtca-ctgc
                Big brown bat  ga-tcta-----g------gacc--------------------tc-----------------tca-ctgc
         David's myotis (bat)  ga-ttt----------------c--------------------tc-----------------tca-ctgc
B D                  Microbat  ga-ttt----------------c--------------------tc-----------------tca-ctgc
B D                     Shrew  ga-ttta----gg------gcct--------------------tg-----------------tca-ctgc
              Star-nosed mole  ga-ttca----gg------gtct--------------------tc-----------------cca-gtgc
B D                  Elephant  gg-tcta----gg------gcct--------------------tg-----------------tca-ttgc
          Cape elephant shrew  ag-ccta----ag------gctt----atag------------tg-----------------tca-gt--
B D                   Manatee  aa-tcta----cg------gcct--------------------tt-----------------tca-ttcc
             Cape golden mole  -----------ag------gatt--------------------t------------------tcg-ttgc
B D                    Tenrec  ga-tctg----ag------gcct--------------------t------------------tgc-tcgc
                     Aardvark  ga-tgca----ga------cctt--------------------t------------------tca-ttgc
B D                 Armadillo  ga-tata----ga------gcct--------------------tc-----------------tca-ctgc
B D           Tasmanian devil  cc-atta----ga------gcct--------------------tt-----------------aaa-attt
B D                  Hedgehog  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
                Prairie vole  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D               Stickleback  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                    Turkey  ======================================================================
                 Spotted gar  ======================================================================
  D              Mallard duck  ======================================================================
  D             Scarlet macaw  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
B D                   Wallaby  ======================================================================
  D    Spiny softshell turtle  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
    Mexican tetra (cavefish)  ----------------------------------------------------------------------
  D          Peregrine falcon  ======================================================================
B D                 Zebrafish  ======================================================================
  D               Rock pigeon  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D       Collared flycatcher  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D               Zebra finch  ======================================================================
  D              Saker falcon  ======================================================================
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
B D       Medium ground finch  ======================================================================
B D                   Opossum  ======================================================================
B D        American alligator  ======================================================================
  D    White-throated sparrow  ======================================================================
          Tibetan ground jay  ======================================================================

                        Human  ttg-gattttgaata------taaa
                        Chimp  ttg-gattttgaata------taaa
                      Gorilla  ttg-gattttgaata------taaa
                    Orangutan  ttg-gattttgaata------taaa
                       Gibbon  ttg-gattttgaata------taaa
                       Rhesus  ttg-gattttggata------taaa
          Crab-eating macaque  ttg-gattttgaata------taaa
                       Baboon  ttg-gattttgaata------taaa
                 Green monkey  ttg-gattttgaata------taaa
                     Marmoset  ttg-gatttttaata------taaa
              Squirrel monkey  ttg-gattttgaata------taaa
                     Bushbaby  tta-gagtttgaata-------aaa
           Chinese tree shrew  ctg-gatttcaaata------taaa
                     Squirrel  ttg-gattgcacatt------aaa-
       Lesser Egyptian jerboa  ttg-aatcttatata------taaa
              Chinese hamster  ttg-aatgccacata------gaaa
               Golden hamster  ttg-aattccacata------gaat
               Naked mole-rat  ttg-gatttcacata------tgga
                   Guinea pig  ctg-gatttcacata------caga
                   Chinchilla  gtg-gaatatctgta------taaa
             Brush-tailed rat  ttg-gatttcacaca------caga
                       Rabbit  ttg-cgtttcaagta------caaa
                         Pika  ttg-ggtttcaaata------taaa
                          Pig  tttcagttttgagta------tcag
                       Alpaca  tttcagtt-tgaata------tcaa
               Bactrian camel  tttcagtt-tgaata------tcaa
                      Dolphin  tttcagtttcgaata------tcac
                 Killer whale  tttcagtttcgaata------tcac
             Tibetan antelope  tttcagttctgaata------tcgg
                          Cow  tttcagttctgaata------tcgg
                        Sheep  tttcagttctgaata------ttgg
                Domestic goat  tttcagttctgaata------tcgg
                        Horse  tttccattttgaata------taaa
             White rhinoceros  tttctgttttgaatg------aaaa
                          Cat  tttcagttttgagta------taaa
                          Dog  ttttggctttgagta------tcaa
                      Ferret   ttccagttgtgaatg------tccg
                        Panda  tttcagttttggatg------tcgg
               Pacific walrus  ttgcagttttgaatg------tcaa
                 Weddell seal  tttcagttttgaatg------tcaa
             Black flying-fox  tttcagttttgaata------taca
                      Megabat  tttcagttttgaata------taca
                Big brown bat  tttccattttgaaca------taa-
         David's myotis (bat)  tttccattttgaaca------taaa
                     Microbat  tttccattttgaaca------taaa
                        Shrew  ttggattt-tgaata------ta--
              Star-nosed mole  tgcgggt------------------
                     Elephant  ttg-gattttgaata------taaa
          Cape elephant shrew  -----------------------aa
                      Manatee  ttc-gattttgaata------taaa
             Cape golden mole  ttg-gattttgaatg------taaa
                       Tenrec  ttg-aatttcaaaga------taca
                     Aardvark  ttg-gattttgaatg------taag
                    Armadillo  ttg-gatttttaatc------taaa
              Tasmanian devil  tt--aatcttaacaactccactaaa
                     Hedgehog  =========================
                          Rat  =========================
                        Mouse  =========================
                 Prairie vole  =========================
       Yellowbelly pufferfish  =========================
                         Fugu  =========================
                  Stickleback  =========================
          Pundamilia nyererei  =========================
                  Zebra mbuna  =========================
        Burton's mouthbreeder  =========================
          Princess of Burundi  =========================
                       Medaka  =========================
                   Coelacanth  =========================
                       Turkey  =========================
                  Spotted gar  =========================
                 Mallard duck  =========================
                Scarlet macaw  =========================
                       Parrot  =========================
                   Budgerigar  =========================
                      Wallaby  =========================
       Spiny softshell turtle  =========================
                       Lizard  =========================
           Southern platyfish  =========================
     Mexican tetra (cavefish)  -------------------------
             Peregrine falcon  =========================
                    Zebrafish  =========================
                  Rock pigeon  =========================
                 Nile tilapia  =========================
               Painted turtle  =========================
                    Tetraodon  =========================
                      Chicken  =========================
                 Atlantic cod  =========================
          Collared flycatcher  =========================
     Chinese softshell turtle  =========================
                  Zebra finch  =========================
                 Saker falcon  =========================
                X. tropicalis  =========================
              Green seaturtle  =========================
          Medium ground finch  =========================
                      Opossum  =========================
           American alligator  =========================
       White-throated sparrow  =========================
           Tibetan ground jay  =========================

Inserts between block 1 and 2 in window
B D           Naked mole-rat 580bp
B D               Guinea pig 310bp

Alignment block 2 of 147 in window, 63817112 - 63817112, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  c
       Lesser Egyptian jerboa  t
B D           Chinese hamster  t
               Golden hamster  t
B D            Naked mole-rat  c
B D                Guinea pig  c
                   Chinchilla  c
             Brush-tailed rat  c
B D                    Rabbit  c
B D                      Pika  t
B D                       Pig  c
B D                    Alpaca  c
               Bactrian camel  c
B D                   Dolphin  c
                 Killer whale  c
             Tibetan antelope  c
B D                       Cow  c
B D                     Sheep  c
                Domestic goat  c
B D                     Horse  t
B D          White rhinoceros  c
B D                       Cat  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
               Pacific walrus  c
                 Weddell seal  t
             Black flying-fox  c
B D                   Megabat  c
B D                  Elephant  c
          Cape elephant shrew  g
B D                   Manatee  c
             Cape golden mole  c
B D                    Tenrec  c
                     Aardvark  t
B D                 Armadillo  c
B D           Tasmanian devil  t
B D                  Hedgehog  =
B D                       Rat  =
B D                     Mouse  =
                Prairie vole  =
B D                     Shrew  -
        David's myotis (bat)  -
             Star-nosed mole  -
B D                  Squirrel  -
B D                  Microbat  -
               Big brown bat  -
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  -
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =

Inserts between block 2 and 3 in window
            Brush-tailed rat 631bp

Alignment block 3 of 147 in window, 63817113 - 63817141, 29 bps 
B D                     Human  ct-aacagtagcttagttggaaatg-caagt
B D                     Chimp  ct-aacagtagcttagttggaaatg-caagt
B D                   Gorilla  ct-aacagtagcttagttggaaatg-caagt
B D                 Orangutan  ct-aacagtagcttagttggagatg-caagt
B D                    Gibbon  ct-aacagtagcttacttggagatg-caagt
B D                    Rhesus  ct-aacagtagcttacttggacatg-caaat
B D       Crab-eating macaque  ct-aacagtagcttacttggacatg-caaat
B D                    Baboon  ct-aacagtagcttacttggacatg-caaat
B D              Green monkey  ct-aacagtagcttacttggacatg-caaat
B D                  Marmoset  tt-aacagtagcttacttggagatg-caagt
B D           Squirrel monkey  ttgaacagtagcttacttggagatg-caagt
B D                  Bushbaby  tt-aacattaacttacttggagatg-gaggt
           Chinese tree shrew  ct-cacagtagcttacttggagctg-cagaa
B D                  Squirrel  ct-aacagtaccttacctgggggtc-tac--
       Lesser Egyptian jerboa  gt-aacagttgcttgtctggagatg-gaagt
B D           Chinese hamster  tt-aacagtatcctgcctggatatg-caagt
               Golden hamster  tt-aacagtatcctgcctggatatg-caagt
B D            Naked mole-rat  tt-aacagtagcttacctagagatg-gaagt
B D                Guinea pig  tt-aacagtagcttatctagagaga-caagt
                   Chinchilla  tg-aacaatagcttacctagagata-gaagt
B D                    Rabbit  ----ttagtagtttatccagagctg-caggt
B D                      Pika  ----gta-cagtt-----agagctg-cag--
B D                       Pig  tt-aactacagcttacctagagatg-catgc
B D                    Alpaca  tt-aactgtagtttac--agagttg-cagct
               Bactrian camel  tt-aactgtagtttac--agagatg-cagct
B D                   Dolphin  gt-aactgcagcttacctagagctg-caggt
                 Killer whale  gt-aactgcagcttacctagagctg-caggt
             Tibetan antelope  tt-aactgcagc-tacctagagctg-caggt
B D                       Cow  tt-aactgcagcttacctagagctg-caggt
B D                     Sheep  tt-aactgcagcttacctagagctg-caggt
                Domestic goat  tt-aactgcagcttacctagagctg-caggt
B D                     Horse  tt-aagtgtagcttacctagaaatgccaggt
B D          White rhinoceros  tt-aaccatagcttacctagaaatg-caggt
B D                       Cat  tt-agtggtagcttacctagaggtg-caggt
B D                       Dog  tt-tgtggtcacttacctagagctg-taggt
B D                   Ferret   tt-cgggccaggttacctggagctg-caggt
B D                     Panda  tt-catgatggcttacctagagctg-caggt
               Pacific walrus  tt-catgatagcttacatagagctg-caggt
                 Weddell seal  tt-cataatagcttacatagagctg-caggt
             Black flying-fox  tt-acctgtagcttacctacagatg-aaggt
B D                   Megabat  tt-acctgtagcttacctacagatg-caggt
                Big brown bat  --------tacctgc--------------gt
         David's myotis (bat)  -----ctgtagctaatctagagatg-caggt
B D                  Microbat  -----ctgtagctaatctagagatg-caggt
B D                     Shrew  ---------agctaaa----accta-caggt
              Star-nosed mole  ---------agcagtc----acctt-cagg-
B D                  Elephant  tt-agaagtaacttacctggacatg-taagt
          Cape elephant shrew  tc-ag-ggtaagttaggtaaaggtg-taggt
B D                   Manatee  tt-aaaagtaacttacctggagacg-cagat
             Cape golden mole  tt-agaagtaacttaacatggagaa-aaggg
B D                    Tenrec  tc-agaaataacttagcaggaggtg-caggt
                     Aardvark  tt-agaagtaacttacctggagatg-c----
B D                 Armadillo  tt-a--attagcttacctagagatg-caggt
B D           Tasmanian devil  gt-ttcagtgacatggttttgaatc-catct
B D                  Hedgehog  ===============================
B D                       Rat  ===============================
B D                     Mouse  ===============================
                Prairie vole  ===============================
            Brush-tailed rat  ===============================
      Yellowbelly pufferfish  ===============================
B D                      Fugu  ===============================
B D               Stickleback  ===============================
         Pundamilia nyererei  ===============================
                 Zebra mbuna  ===============================
       Burton's mouthbreeder  ===============================
         Princess of Burundi  ===============================
B D                    Medaka  ===============================
B D                Coelacanth  ===============================
B D                    Turkey  ===============================
                 Spotted gar  ===============================
  D              Mallard duck  ===============================
  D             Scarlet macaw  ===============================
  D                    Parrot  ===============================
B D                Budgerigar  ===============================
B D                   Wallaby  ===============================
  D    Spiny softshell turtle  ===============================
B D                    Lizard  ===============================
          Southern platyfish  ===============================
    Mexican tetra (cavefish)  -------------------------------
  D          Peregrine falcon  ===============================
B D                 Zebrafish  ===============================
  D               Rock pigeon  ===============================
B D              Nile tilapia  ===============================
  D            Painted turtle  ===============================
B D                 Tetraodon  ===============================
B D                   Chicken  ===============================
B D              Atlantic cod  ===============================
  D       Collared flycatcher  ===============================
  D  Chinese softshell turtle  ===============================
B D               Zebra finch  ===============================
  D              Saker falcon  ===============================
B D             X. tropicalis  ===============================
  D           Green seaturtle  ===============================
B D       Medium ground finch  ===============================
B D                   Opossum  ===============================
B D        American alligator  ===============================
  D    White-throated sparrow  ===============================
          Tibetan ground jay  ===============================

Inserts between block 3 and 4 in window
      Lesser Egyptian jerboa 5bp
B D           Naked mole-rat 6bp
B D               Guinea pig 1bp
                  Chinchilla 2bp
B D                 Elephant 4bp
         Cape elephant shrew 4bp
B D                  Manatee 4bp
            Cape golden mole 2bp
B D                   Tenrec 200bp
                    Aardvark 8bp
B D                Armadillo 3bp

Alignment block 4 of 147 in window, 63817142 - 63817144, 3 bps 
B D                     Human  --t--ga
B D                     Chimp  --t--ga
B D                   Gorilla  --t--ga
B D                 Orangutan  --t--ga
B D                    Gibbon  --t--ga
B D                    Rhesus  --t--ga
B D       Crab-eating macaque  --t--ga
B D                    Baboon  --t--ga
B D              Green monkey  --t--ga
B D                  Marmoset  --t--ga
B D           Squirrel monkey  --t--ca
B D                  Bushbaby  --gtaaa
           Chinese tree shrew  --g--gc
B D                  Squirrel  ------a
               Golden hamster  ------a
B D            Naked mole-rat  ----aga
B D                Guinea pig  ----aga
                   Chinchilla  ----aga
B D                    Rabbit  ----aga
B D                       Pig  ----ata
B D                    Alpaca  ----gta
               Bactrian camel  ----gta
B D                   Dolphin  ----gta
                 Killer whale  ----gta
             Tibetan antelope  ----gta
B D                       Cow  ----gta
B D                     Sheep  ----gta
                Domestic goat  ----gta
B D                     Horse  ----gta
B D          White rhinoceros  ----gta
B D                       Cat  ----gta
B D                       Dog  ----gta
B D                   Ferret   ----gta
B D                     Panda  ----gta
               Pacific walrus  ----gta
                 Weddell seal  ----gta
             Black flying-fox  ----gta
B D                   Megabat  ----gta
                Big brown bat  ----att
         David's myotis (bat)  ----gta
B D                  Microbat  ----gta
B D                     Shrew  ----gta
B D                  Elephant  ------a
          Cape elephant shrew  ------a
B D                   Manatee  ------a
             Cape golden mole  ------a
                     Aardvark  ------a
B D                 Armadillo  ------a
B D           Tasmanian devil  ttc----
B D                    Tenrec  =======
B D                  Hedgehog  =======
B D                       Rat  =======
B D                     Mouse  =======
B D           Chinese hamster  -------
                Prairie vole  =======
             Star-nosed mole  -------
B D                      Pika  -------
      Lesser Egyptian jerboa  =======
            Brush-tailed rat  =======
      Yellowbelly pufferfish  =======
B D                      Fugu  =======
B D               Stickleback  =======
         Pundamilia nyererei  =======
                 Zebra mbuna  =======
       Burton's mouthbreeder  =======
         Princess of Burundi  =======
B D                    Medaka  =======
B D                Coelacanth  =======
B D                    Turkey  =======
                 Spotted gar  =======
  D              Mallard duck  =======
  D             Scarlet macaw  =======
  D                    Parrot  =======
B D                Budgerigar  =======
B D                   Wallaby  =======
  D    Spiny softshell turtle  =======
B D                    Lizard  =======
          Southern platyfish  =======
    Mexican tetra (cavefish)  -------
  D          Peregrine falcon  =======
B D                 Zebrafish  =======
  D               Rock pigeon  =======
B D              Nile tilapia  =======
  D            Painted turtle  =======
B D                 Tetraodon  =======
B D                   Chicken  =======
B D              Atlantic cod  =======
  D       Collared flycatcher  =======
  D  Chinese softshell turtle  =======
B D               Zebra finch  =======
  D              Saker falcon  =======
B D             X. tropicalis  =======
  D           Green seaturtle  =======
B D       Medium ground finch  =======
B D                   Opossum  =======
B D        American alligator  =======
  D    White-throated sparrow  =======
          Tibetan ground jay  =======

Inserts between block 4 and 5 in window
B D                 Squirrel 6bp
              Golden hamster 2bp
B D                      Pig 3bp
B D                   Alpaca 3bp
              Bactrian camel 3bp
B D                  Dolphin 3bp
                Killer whale 3bp
            Tibetan antelope 3bp
B D                      Cow 3bp
B D                    Sheep 3bp
               Domestic goat 3bp
B D                    Horse 3bp
B D         White rhinoceros 3bp
B D                      Cat 3bp
B D                      Dog 3bp
B D                  Ferret  3bp
B D                    Panda 3bp
              Pacific walrus 3bp
                Weddell seal 3bp
            Black flying-fox 3bp
B D                  Megabat 3bp
               Big brown bat 3bp
        David's myotis (bat) 3bp
B D                 Microbat 3bp
B D                 Elephant 2bp
         Cape elephant shrew 2bp
B D                  Manatee 2bp
            Cape golden mole 2bp
                    Aardvark 2bp
B D                Armadillo 2bp

Alignment block 5 of 147 in window, 63817145 - 63817167, 23 bps 
B D                     Human  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D                     Chimp  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D                   Gorilla  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D                 Orangutan  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D                    Gibbon  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D                    Rhesus  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D       Crab-eating macaque  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D                    Baboon  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D              Green monkey  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D                  Marmoset  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D           Squirrel monkey  tctag-a--------gaacccct---t-gtgctg------g---t-------
B D                  Bushbaby  accag-a--------gaaccctt---c-atgcta------gtcat-------
           Chinese tree shrew  tttag-g--------a------------gtggtc------a---c-------
B D                  Squirrel  gc----a--------aaaacctt---t-gtgctg------g---t-------
       Lesser Egyptian jerboa  acta--g--------aaaaactt---g-atgctg------g---t-------
B D            Naked mole-rat  gctaggg--------aaacgcct---c-atgctg------g---t-------
B D                Guinea pig  gctaggg--------aaaaccct---c-atggtg------g---t-------
                   Chinchilla  gctaggg--------aaaccgct---g-atgctg------g---t-------
B D                    Rabbit  ------gagcaacaaaaacccct---c-gttctg------g---t-------
B D                      Pika  ---------------aagcccct---c-ctgctg------g---g-------
B D                       Pig  gctagat--------aaacctct---c-ttgctg------g---t-------
B D                    Alpaca  actagag--------aagcccct---c-ttacta------g---t-------
               Bactrian camel  gctaggg--------aagcccct---c-ttactg------g---t-------
B D                   Dolphin  cctagag--------aaacccct---c-ttgctg------g---t-------
                 Killer whale  cctagag--------aaacccct---c-ttgctg------g---t-------
             Tibetan antelope  gctggac--------aaacccct---g-ttgctg------g---t-------
B D                       Cow  gctggac--------aaacccct---g-ttgctg------g---t-------
B D                     Sheep  gctggac--------aaacccct---g-ttgctg------g---t-------
                Domestic goat  gctggac--------aaacccct---g-ttgctg------g---t-------
B D                     Horse  gatagag--------aaacccct---ctttgctg------g---t-------
B D          White rhinoceros  ggaagag--------aaacccct---c-ttgctg------g---t-------
B D                       Cat  gctaggg--------aatctcct---c-ctgccg------g---t-------
B D                       Dog  ggtagaa--------aat----------ctactg------a---t-------
B D                   Ferret   gctgggc--------agt----------ctgagg------c---t-------
B D                     Panda  gctagg---------aat----------ctgctg------g---t-------
               Pacific walrus  gttagga--------aat----------ctgctg------g---t-------
                 Weddell seal  gctagga--------aat-------------ctg------g---t-------
             Black flying-fox  gctggag--------aaacccct---g-ttgcct------g---t-------
B D                   Megabat  gctggag--------aaacccct---g-ttgccc------g---t-------
                Big brown bat  gctacag--------aaacccct---c-tgg-ct------g---t-------
         David's myotis (bat)  gctacag--------aaacccct---c-ttg-ct------g---t-------
B D                  Microbat  gctacag--------aaacccct---c-ttg-ct------g---t-------
B D                     Shrew  ----------------------------atg---------------------
B D                  Elephant  -ccaggg--------gaaccact---c-ctgctg------g---t-------
          Cape elephant shrew  -ccaggg--------agaacact---c-ctgctg------g---t-------
B D                   Manatee  -ccaggg--------aaaccact---c-ttgctt------a---t-------
             Cape golden mole  -ccaggg--------acagcact---c-ctgctgagagtag---t-------
                     Aardvark  -gcaggg--------aaaccact---c-ctgctg------a---t-------
B D                 Armadillo  -cttgtg--------aaaccatt---c-ctgcaa------t-----------
B D           Tasmanian devil  --------------------cctaaat-tagctg------g---gcattcat
B D                    Tenrec  ====================================================
B D                  Hedgehog  ====================================================
B D                       Rat  ====================================================
B D                     Mouse  ====================================================
              Golden hamster  ====================================================
B D           Chinese hamster  ----------------------------------------------------
                Prairie vole  ====================================================
             Star-nosed mole  ----------------------------------------------------
            Brush-tailed rat  ====================================================
      Yellowbelly pufferfish  ====================================================
B D                      Fugu  ====================================================
B D               Stickleback  ====================================================
         Pundamilia nyererei  ====================================================
                 Zebra mbuna  ====================================================
       Burton's mouthbreeder  ====================================================
         Princess of Burundi  ====================================================
B D                    Medaka  ====================================================
B D                Coelacanth  ====================================================
B D                    Turkey  ====================================================
                 Spotted gar  ====================================================
  D              Mallard duck  ====================================================
  D             Scarlet macaw  ====================================================
  D                    Parrot  ====================================================
B D                Budgerigar  ====================================================
B D                   Wallaby  ====================================================
  D    Spiny softshell turtle  ====================================================
B D                    Lizard  ====================================================
          Southern platyfish  ====================================================
    Mexican tetra (cavefish)  ----------------------------------------------------
  D          Peregrine falcon  ====================================================
B D                 Zebrafish  ====================================================
  D               Rock pigeon  ====================================================
B D              Nile tilapia  ====================================================
  D            Painted turtle  ====================================================
B D                 Tetraodon  ====================================================
B D                   Chicken  ====================================================
B D              Atlantic cod  ====================================================
  D       Collared flycatcher  ====================================================
  D  Chinese softshell turtle  ====================================================
B D               Zebra finch  ====================================================
  D              Saker falcon  ====================================================
B D             X. tropicalis  ====================================================
  D           Green seaturtle  ====================================================
B D       Medium ground finch  ====================================================
B D                   Opossum  ====================================================
B D        American alligator  ====================================================
  D    White-throated sparrow  ====================================================
          Tibetan ground jay  ====================================================

Inserts between block 5 and 6 in window
B D                   Rabbit 3bp
B D                     Pika 4bp
B D                      Pig 3bp
B D                   Alpaca 3bp
              Bactrian camel 3bp
B D                  Dolphin 3bp
                Killer whale 3bp
            Tibetan antelope 3bp
B D                      Cow 3bp
B D                    Sheep 3bp
               Domestic goat 3bp
B D                    Horse 3bp
B D         White rhinoceros 3bp
B D                      Cat 3bp
B D                      Dog 3bp
B D                  Ferret  3bp
B D                    Panda 3bp
              Pacific walrus 3bp
                Weddell seal 3bp
            Black flying-fox 3bp
B D                  Megabat 3bp
               Big brown bat 3bp
        David's myotis (bat) 3bp
B D                 Microbat 3bp
                    Aardvark 684bp

Alignment block 6 of 147 in window, 63817168 - 63817230, 63 bps 
B D                     Human  ctac------tttgagt---cacacttg---------------gggcctgggattgt-t-g-----tcc-
B D                     Chimp  ctac------tctgagt---cacactcg---------------gggcctgggattgt-t-g-----tcc-
B D                   Gorilla  ctac------tttgagt---cacactca---------------gggcctgggattgt-t-g-----tcc-
B D                 Orangutan  ctac------tttgagt---cacactcg---------------gggcctgggattgt-t-g-----tcc-
B D                    Gibbon  ctac------tttgagt---cacactca---------------gggcctgggattgt-t-g-----tcc-
B D                    Rhesus  ctac------t-tgagt---cacactca---------------gggcctgggattgt-t-g-----tcc-
B D       Crab-eating macaque  ctac------t-tgagt---cacactca---------------gggcctgggattgt-t-g-----tcc-
B D                    Baboon  ctac------t-tgagt---cacactca---------------gggcctgggattgt-t-g-----tcc-
B D              Green monkey  ctac------t-tgagt---catactca---------------gggcctgggattgt-t-g-----tcc-
B D                  Marmoset  ctac------t-tgagt---cccactca---------------gagcctgggattgt-c-g-----ttc-
B D           Squirrel monkey  ctac------t-tgagt---cccactta---------------gagcctgggattgt-c-g-----ttc-
B D                  Bushbaby  ctgc------t-tgagt---c--actcc---------------aggtctacaactgc-a-g-----tac-
           Chinese tree shrew  ttcc------t-ttagt---cacacccc---------------gaac--agagctgt-c-g-----tgc-
B D                  Squirrel  catc------t-gtatctgtcctagcca---------------gagtctgggattac-t-g-----tac-
       Lesser Egyptian jerboa  catc------t-acatc---------------------------agcctgaaagtgg-c-a-----tac-
B D            Naked mole-rat  catt------t-gtatc---agcagcca---------------gagcctgagattgc-t-a-----tac-
B D                Guinea pig  catt------t-gtatc---agcagcca---------------gagcctgagactgc-t-a-----tac-
                   Chinchilla  cctt------t-gtatc---atcagcca---------------ga-cctgagactgc-t-g-----tac-
B D                    Rabbit  tacc------t-gctgcagtcacaccta---------------gagcccagggc----------------
B D                      Pika  catc------t-gctgcattctca-cga---------------gagcccagggctgctt-g-----tgc-
B D                       Pig  ttgc------t-ccact---tgt----------------------gctcagggctct-t-g-----tcc-
B D                    Alpaca  ccg----------cagt---cac----------------------gctcagggctct-t-g-----tcc-
               Bactrian camel  ccg----------cagt---cac----------------------gctcagggctct-t-g-----tcc-
B D                   Dolphin  ctac------t-tcagt---cat----------------------gctcagggccct-c-c-----tcc-
                 Killer whale  ctac------t-tcagt---cat----------------------gctcagggccct-c-c-----tcc-
             Tibetan antelope  ctcc------t-tcagg---cat----------------------gctcagggccct-c-a-----acc-
B D                       Cow  cccc------t-tcagg---cac----------------------gctcagggccct-c-g-----acc-
B D                     Sheep  ctcc------t-tcagg---cat----------------------gctcagggccct-c-a-----acc-
                Domestic goat  ctcc------t-tcagg---cat----------------------gctcagggccct-c-a-----acc-
B D                     Horse  ctac------t-tcagt---cacaccca---------------gagcccaggaccat-t-g-----tact
B D          White rhinoceros  ctac------t-tcagt---cacaccca---------------gagccggagaccat-t-g-----tac-
B D                       Cat  tgac------c-tccgt---ctt-ccca---------------aagcccaggactgt-t-g-----tgc-
B D                       Dog  agcc------t-tccat---cct-ccca---------------gaacctgggactgt-t-a-----tac-
B D                   Ferret   ggac------g-tgagc---tat-ccca---------------gagcctgggactgt-t-g-----tgc-
B D                     Panda  ggat------g-tccct---cat-ccca---------------gagtctgggactgt-c-g-----tac-
               Pacific walrus  ggac------a-tccgt---cat-ccca---------------gagcctggaactgt-t-g-----tac-
                 Weddell seal  ggac------a-tccgt---cat-ccca---------------gagcttgggactgt-tgg-----tac-
             Black flying-fox  ctac------t-tcagt---cacagcca---------------gagcccgagactct-t-g-----tac-
B D                   Megabat  ctac------t-tcagt---cacagcca---------------gagcccgagactct-t-g-----tac-
                Big brown bat  ctac------c-tcagg---tacg--ct---------------gagcccaggactgt-t-g-----cac-
         David's myotis (bat)  ctac------c-tcagg---caca--ct---------------gagcccaggactgt-g-g-----tac-
B D                  Microbat  ctgc------c-tcagg---cacg--ct---------------gagcccaggactgg-g-g-----tac-
B D                     Shrew  ----------t-tcatt---cac---ct---------------cagtctgggtccat-t-a-----gga-
              Star-nosed mole  --------------------------ca---------------gagccggcgtctgt-t-g-----gac-
B D                  Elephant  tgac------t-tcagt---cacaccca---------------gagtcccagactgt-t-g-----gac-
          Cape elephant shrew  ggttgg----c-tcagt---cacaccta---------------ccgcccagaacagt-t-g-----ggc-
B D                   Manatee  ggtcaac---t-tcagt---cacaccca---------------gagccctggactgt-t-g-----gac-
             Cape golden mole  ggac------g-tcatt---cacaccca---------------gagcc----------------------
B D                 Armadillo  ------ctgct-tcagt---cacacct----------------gcaccctggtacat-t-g-----tac-
B D           Tasmanian devil  ---------------------atacccaaatgaacatgcttctgggctaggggttct-t-aactttttt-
B D                    Tenrec  ======================================================================
B D                  Hedgehog  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
              Golden hamster  ======================================================================
B D           Chinese hamster  ----------------------------------------------------------------------
                Prairie vole  ======================================================================
            Brush-tailed rat  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
                    Aardvark  ======================================================================
B D               Stickleback  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                    Turkey  ======================================================================
                 Spotted gar  ======================================================================
  D              Mallard duck  ======================================================================
  D             Scarlet macaw  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
B D                   Wallaby  ======================================================================
  D    Spiny softshell turtle  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
    Mexican tetra (cavefish)  ----------------------------------------------------------------------
  D          Peregrine falcon  ======================================================================
B D                 Zebrafish  ======================================================================
  D               Rock pigeon  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D       Collared flycatcher  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D               Zebra finch  ======================================================================
  D              Saker falcon  ======================================================================
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
B D       Medium ground finch  ======================================================================
B D                   Opossum  ======================================================================
B D        American alligator  ======================================================================
  D    White-throated sparrow  ======================================================================
          Tibetan ground jay  ======================================================================

                        Human  --------------------------------------------------t--gcagcagggtgtgtgtt
                        Chimp  --------------------------------------------------t--gcagcagggtgtgtgtt
                      Gorilla  --------------------------------------------------t--gcagcagggtgtgtgtt
                    Orangutan  --------------------------------------------------t--gcagcagggtgtgtgtt
                       Gibbon  --------------------------------------------------t--gcagcagggtgtgtgtt
                       Rhesus  --------------------------------------------------t--gcagcagggtgtgtgtt
          Crab-eating macaque  --------------------------------------------------t--gcagcagggtgtgtgtt
                       Baboon  --------------------------------------------------t--gcagcagggtgtgtgtt
                 Green monkey  --------------------------------------------------t--gcagcagggtgtgtgtt
                     Marmoset  --------------------------------------------------t--gcagcagaatgtgtgtt
              Squirrel monkey  --------------------------------------------------t--gcagcaggatgtgtgtt
                     Bushbaby  ----------------------------------------------------------------tgtgtt
           Chinese tree shrew  --------------------------------------------------t--gcagtggggtttgt---
                     Squirrel  --------------------------------------------------t--acagcaggattttt-tc
       Lesser Egyptian jerboa  --------------------------------------------------t--gcagccagttatgt-cc
               Naked mole-rat  --------------------------------------------------t--gcagcagggtctgt-tt
                   Guinea pig  --------------------------------------------------g--gtaggagggtctgt-tt
                   Chinchilla  --------------------------------------------------t--ata-taggatctgt-tt
                       Rabbit  ----------------------------------------------------------------------
                         Pika  --------------------------------------------------t--gcagccgtgttgg----
                          Pig  --------------------------------------------------t--gcagcagagttcatgtt
                       Alpaca  --------------------------------------------------t--acagcaggactggtgtt
               Bactrian camel  --------------------------------------------------t--acagcaggactggtgtt
                      Dolphin  --------------------------------------------------t--acagcaggattggtgtt
                 Killer whale  --------------------------------------------------t--acagcaggattggtgtt
             Tibetan antelope  --------------------------------------------------t--aaaacagtttcagtgtt
                          Cow  --------------------------------------------------t--acaacagtatcagtgtt
                        Sheep  --------------------------------------------------t--aaaacagtttcagtgtt
                Domestic goat  --------------------------------------------------t--aaaacagtttcagtgtt
                        Horse  acagcaggatttgtactgcagcaggatttgtactgcagcaggatttgtagt--gcagcaggattggtgtt
             White rhinoceros  --------------------------------------------------t--gcagcagaattggtgtt
                          Cat  --------------------------------------------------t--gccgcagggctggtgtt
                          Dog  --------------------------------------------------t--gctacaggactgatgtt
                      Ferret   --------------------------------------------------t--gtagcagggctggtgtt
                        Panda  --------------------------------------------------g--gcagcaggcctggtgtg
               Pacific walrus  --------------------------------------------------t--gcagcagggctggcggt
                 Weddell seal  --------------------------------------------------t--gcagcagggctggcggt
             Black flying-fox  --------------------------------------------------t--a-agcatggttggtgtt
                      Megabat  --------------------------------------------------t--a-agcatggttggtgtt
                Big brown bat  --------------------------------------------------t--gcagcaggattgctgtt
         David's myotis (bat)  --------------------------------------------------t--gcagcaggattgctgtt
                     Microbat  --------------------------------------------------t--gcagcaggattgctgtt
                        Shrew  --------------------------------------------------ttagtaatacggt-------
              Star-nosed mole  --------------------------------------------------t--gcagtggggtgcgtg-t
                     Elephant  --------------------------------------------------t--acaacaggatct--gct
          Cape elephant shrew  --------------------------------------------------a--gcagcagggctc--ttt
                      Manatee  --------------------------------------------------t--gcagcaggattcatatt
             Cape golden mole  ---------------------------------------------------------caggatctgcgct
                    Armadillo  --------------------------------------------------t--gcagcaggttttgtgtt
              Tasmanian devil  --------------------------------------------------t--gtcatagaaccc-----
                       Tenrec  ======================================================================
                     Hedgehog  ======================================================================
                          Rat  ======================================================================
                        Mouse  ======================================================================
               Golden hamster  ======================================================================
              Chinese hamster  ----------------------------------------------------------------------
                 Prairie vole  ======================================================================
             Brush-tailed rat  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                     Aardvark  ======================================================================
                  Stickleback  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
                       Medaka  ======================================================================
                   Coelacanth  ======================================================================
                       Turkey  ======================================================================
                  Spotted gar  ======================================================================
                 Mallard duck  ======================================================================
                Scarlet macaw  ======================================================================
                       Parrot  ======================================================================
                   Budgerigar  ======================================================================
                      Wallaby  ======================================================================
       Spiny softshell turtle  ======================================================================
                       Lizard  ======================================================================
           Southern platyfish  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
             Peregrine falcon  ======================================================================
                    Zebrafish  ======================================================================
                  Rock pigeon  ======================================================================
                 Nile tilapia  ======================================================================
               Painted turtle  ======================================================================
                    Tetraodon  ======================================================================
                      Chicken  ======================================================================
                 Atlantic cod  ======================================================================
          Collared flycatcher  ======================================================================
     Chinese softshell turtle  ======================================================================
                  Zebra finch  ======================================================================
                 Saker falcon  ======================================================================
                X. tropicalis  ======================================================================
              Green seaturtle  ======================================================================
          Medium ground finch  ======================================================================
                      Opossum  ======================================================================
           American alligator  ======================================================================
       White-throated sparrow  ======================================================================
           Tibetan ground jay  ======================================================================

                        Human  ccc----tccc
                        Chimp  ccc----tccc
                      Gorilla  ccc----tccc
                    Orangutan  ccc----tccc
                       Gibbon  ccc----tccc
                       Rhesus  ccc----tccc
          Crab-eating macaque  ccc----tccc
                       Baboon  ccc----tccc
                 Green monkey  ccc----tccc
                     Marmoset  ccc----tctc
              Squirrel monkey  ccc----tccc
                     Bushbaby  ccc----tcaa
           Chinese tree shrew  -------ttcc
                     Squirrel  tac----aacc
       Lesser Egyptian jerboa  ctc------cc
               Naked mole-rat  cat----tctc
                   Guinea pig  cat----tccc
                   Chinchilla  cat----t-cc
                       Rabbit  cat----ttcc
                         Pika  cat----tccc
                          Pig  ccc----tccc
                       Alpaca  ccc----tccc
               Bactrian camel  ccc----tccc
                      Dolphin  ccc----tccc
                 Killer whale  ccc----tccc
             Tibetan antelope  ccc----tccc
                          Cow  ccc----tccc
                        Sheep  ccc----tccc
                Domestic goat  ccc----tccc
                        Horse  ccc----tccc
             White rhinoceros  ccc----tccc
                          Cat  ccc----tccc
                          Dog  cct----tccc
                      Ferret   ccc----tccc
                        Panda  cccgcctgccc
               Pacific walrus  cct----gcct
                 Weddell seal  ccc----gccc
             Black flying-fox  ccc----tccc
                      Megabat  ccc----gccc
                Big brown bat  ccc----tccc
         David's myotis (bat)  ccc----t-tc
                     Microbat  ccc----t-tc
                        Shrew  --c----tctt
              Star-nosed mole  ccc----tcct
                     Elephant  tcc----tctc
          Cape elephant shrew  ctc----ttgc
                      Manatee  ccc----tccc
             Cape golden mole  ccc----tccc
                    Armadillo  ccc----tccc
              Tasmanian devil  -----------
                       Tenrec  ===========
                     Hedgehog  ===========
                          Rat  ===========
                        Mouse  ===========
               Golden hamster  ===========
              Chinese hamster  -----------
                 Prairie vole  ===========
             Brush-tailed rat  ===========
       Yellowbelly pufferfish  ===========
                         Fugu  ===========
                     Aardvark  ===========
                  Stickleback  ===========
          Pundamilia nyererei  ===========
                  Zebra mbuna  ===========
        Burton's mouthbreeder  ===========
          Princess of Burundi  ===========
                       Medaka  ===========
                   Coelacanth  ===========
                       Turkey  ===========
                  Spotted gar  ===========
                 Mallard duck  ===========
                Scarlet macaw  ===========
                       Parrot  ===========
                   Budgerigar  ===========
                      Wallaby  ===========
       Spiny softshell turtle  ===========
                       Lizard  ===========
           Southern platyfish  ===========
     Mexican tetra (cavefish)  -----------
             Peregrine falcon  ===========
                    Zebrafish  ===========
                  Rock pigeon  ===========
                 Nile tilapia  ===========
               Painted turtle  ===========
                    Tetraodon  ===========
                      Chicken  ===========
                 Atlantic cod  ===========
          Collared flycatcher  ===========
     Chinese softshell turtle  ===========
                  Zebra finch  ===========
                 Saker falcon  ===========
                X. tropicalis  ===========
              Green seaturtle  ===========
          Medium ground finch  ===========
                      Opossum  ===========
           American alligator  ===========
       White-throated sparrow  ===========
           Tibetan ground jay  ===========

Inserts between block 6 and 7 in window
B D                 Squirrel 1bp
      Lesser Egyptian jerboa 1bp
B D           Naked mole-rat 1bp
B D               Guinea pig 1bp
                  Chinchilla 1bp
B D                   Rabbit 6bp
B D                     Pika 390bp
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                    Shrew 1bp
             Star-nosed mole 1bp
B D                 Elephant 1bp
         Cape elephant shrew 1bp
B D                  Manatee 1bp
B D                Armadillo 1bp

Alignment block 7 of 147 in window, 63817231 - 63817240, 10 bps 
B D                     Human  t-tcc-------caacag
B D                     Chimp  t-tcc-------caacag
B D                   Gorilla  t-tcc-------caacag
B D                 Orangutan  t-tcc-------caacag
B D                    Gibbon  t-tcc-------tagcag
B D                    Rhesus  t-tcc-------caacag
B D       Crab-eating macaque  t-tcc-------caatag
B D                    Baboon  t-tcc-------caacag
B D              Green monkey  t-tcc-------caatag
B D                  Marmoset  t-tcc-------cagcag
B D           Squirrel monkey  t-tcc-------cagcag
B D                  Bushbaby  t-ctc-------ca-tag
           Chinese tree shrew  t-ccc-------taatgg
B D                  Squirrel  g-----------------
       Lesser Egyptian jerboa  g-tct-------cta---
B D            Naked mole-rat  a-gct-------ccacag
B D                Guinea pig  a-gtt-------ccacaa
                   Chinchilla  a-gct-------ccacaa
B D                    Rabbit  g-tct-------caacag
B D                       Pig  c-cctccctccctcccag
B D                    Alpaca  g-cct-------tgacag
               Bactrian camel  g-cct-------tgacag
B D                   Dolphin  g-cct-------taacag
                 Killer whale  g-cct-------taacag
             Tibetan antelope  g-ctc-------taacaa
B D                       Cow  g-ctc-------taagaa
B D                     Sheep  g-ctc------ttaacaa
                Domestic goat  g-ctc-------taacaa
B D                     Horse  g-cct-------cgacag
B D          White rhinoceros  g-cct-------caacag
B D                       Cat  g-cct-------ccacag
B D                       Dog  g-cct-------caatag
B D                   Ferret   g-----------------
B D                     Panda  g-ctt-------caacac
               Pacific walrus  g-cct-------caacag
                 Weddell seal  g-cct-------caacag
             Black flying-fox  t-cct-------ccacag
B D                   Megabat  t-cct-------ccacag
                Big brown bat  g-cct-------caccaa
         David's myotis (bat)  g-cct-------caccaa
B D                  Microbat  g-cct-------caccaa
B D                     Shrew  g-cct-------aagcaa
              Star-nosed mole  gccct-------cagtgt
B D                  Elephant  g-tct-------cagcag
          Cape elephant shrew  t-gct-------caacca
B D                   Manatee  g-tct-------cagcag
             Cape golden mole  g-gct-------cagcag
B D                 Armadillo  g-tct-------caatag
B D           Tasmanian devil  --att-------tagcaa
B D                    Tenrec  ==================
B D                  Hedgehog  ==================
B D                       Rat  ==================
B D                     Mouse  ==================
              Golden hamster  ==================
B D           Chinese hamster  ------------------
                Prairie vole  ==================
B D                      Pika  ==================
            Brush-tailed rat  ==================
      Yellowbelly pufferfish  ==================
B D                      Fugu  ==================
                    Aardvark  ==================
B D               Stickleback  ==================
         Pundamilia nyererei  ==================
                 Zebra mbuna  ==================
       Burton's mouthbreeder  ==================
         Princess of Burundi  ==================
B D                    Medaka  ==================
B D                Coelacanth  ==================
B D                    Turkey  ==================
                 Spotted gar  ==================
  D              Mallard duck  ==================
  D             Scarlet macaw  ==================
  D                    Parrot  ==================
B D                Budgerigar  ==================
B D                   Wallaby  ==================
  D    Spiny softshell turtle  ==================
B D                    Lizard  ==================
          Southern platyfish  ==================
    Mexican tetra (cavefish)  ------------------
  D          Peregrine falcon  ==================
B D                 Zebrafish  ==================
  D               Rock pigeon  ==================
B D              Nile tilapia  ==================
  D            Painted turtle  ==================
B D                 Tetraodon  ==================
B D                   Chicken  ==================
B D              Atlantic cod  ==================
  D       Collared flycatcher  ==================
  D  Chinese softshell turtle  ==================
B D               Zebra finch  ==================
  D              Saker falcon  ==================
B D             X. tropicalis  ==================
  D           Green seaturtle  ==================
B D       Medium ground finch  ==================
B D                   Opossum  ==================
B D        American alligator  ==================
  D    White-throated sparrow  ==================
          Tibetan ground jay  ==================

Alignment block 8 of 147 in window, 63817241 - 63817253, 13 bps 
B D                     Human  ----------cctgaa-gtgttgc
B D                     Chimp  ----------cctgca-gtgttgc
B D                   Gorilla  ----------cctgca-gtgttgc
B D                    Gibbon  ----------cctgca-gtgttgc
B D                    Rhesus  ----------cctgca-gtattgc
B D       Crab-eating macaque  ----------cctgca-gtattgc
B D                    Baboon  ----------cctgca-gtattgc
B D              Green monkey  ----------cctgca-gtattgc
B D                  Marmoset  ----------cctgtg-gtgttgc
B D           Squirrel monkey  ----------cctgcg-gtgttgc
B D                  Bushbaby  ----------cctgtg-gtgtt-c
           Chinese tree shrew  ----------cttggg-g------
B D                  Squirrel  --------------tg-atgttac
       Lesser Egyptian jerboa  -----------gcctg-gtgttac
B D            Naked mole-rat  ----------cctgtg-ttactgc
B D                Guinea pig  ----------cctttg-gtgttgc
                   Chinchilla  ----------cccttg-gtgttgc
B D                    Rabbit  ----------cctgtg-gtgttgc
B D                    Alpaca  ----------cctaca-gtgttgc
               Bactrian camel  ----------cctaca-gtgttgc
B D                   Dolphin  ----------ccttca-aggc---
                 Killer whale  ----------ccttca-aggc---
B D                     Horse  ----------cctaca-gtgttgc
B D          White rhinoceros  ----------cctaca-atgttgc
B D                       Cat  ----------ccaaga-gt-ttgc
B D                       Dog  ----------ccaaca-gtgttgt
B D                   Ferret   ----------ccaaca-gtcttgc
B D                     Panda  ----------ccaacg-gtgttgc
               Pacific walrus  ----------ccaaca-gcgttgc
                 Weddell seal  ----------ccgaca-gcattgc
             Black flying-fox  ----------ccta---gtgttac
B D                   Megabat  ----------ccta---gtgttac
                Big brown bat  ----------cctact-gtgttgc
         David's myotis (bat)  ----------cctact-gagttgt
B D                  Microbat  ----------cctact-gagttgc
B D                     Shrew  ----------tctaga-atgttcc
              Star-nosed mole  ----------cctgga-gtg-tcc
B D                  Elephant  ----------cctgca-gtgttac
          Cape elephant shrew  ----------cctgca-gtgttaa
B D                   Manatee  ----------cctgca-gtgttac
             Cape golden mole  ----------ccagcg-gtgctgc
B D                    Tenrec  ----------ctggat-gttttgt
B D                 Armadillo  ----------cctacaggtgtagc
B D           Tasmanian devil  tctgatgaaacctatg-ga-----
B D                  Hedgehog  ========================
B D                       Rat  ========================
B D                     Mouse  ========================
              Golden hamster  ========================
B D           Chinese hamster  ------------------------
                Prairie vole  ========================
            Tibetan antelope  ------------------------
               Domestic goat  ------------------------
B D                     Sheep  ------------------------
B D                       Cow  ------------------------
B D                      Pika  ========================
            Brush-tailed rat  ========================
      Yellowbelly pufferfish  ========================
B D                      Fugu  ========================
                    Aardvark  ========================
B D               Stickleback  ========================
         Pundamilia nyererei  ========================
                 Zebra mbuna  ========================
       Burton's mouthbreeder  ========================
         Princess of Burundi  ========================
B D                    Medaka  ========================
B D                Coelacanth  ========================
B D                    Turkey  ========================
                 Spotted gar  ========================
  D              Mallard duck  ========================
  D             Scarlet macaw  ========================
  D                    Parrot  ========================
B D                Budgerigar  ========================
B D                   Wallaby  ========================
  D    Spiny softshell turtle  ========================
B D                    Lizard  ========================
          Southern platyfish  ========================
    Mexican tetra (cavefish)  ------------------------
  D          Peregrine falcon  ========================
B D                 Zebrafish  ========================
  D               Rock pigeon  ========================
B D              Nile tilapia  ========================
  D            Painted turtle  ========================
B D                 Tetraodon  ========================
B D                   Chicken  ========================
B D              Atlantic cod  ========================
  D       Collared flycatcher  ========================
  D  Chinese softshell turtle  ========================
B D               Zebra finch  ========================
  D              Saker falcon  ========================
B D             X. tropicalis  ========================
  D           Green seaturtle  ========================
B D       Medium ground finch  ========================
B D                   Opossum  ========================
B D        American alligator  ========================
  D    White-throated sparrow  ========================
          Tibetan ground jay  ========================
B D                       Pig  ------------------------
B D                 Orangutan  ------------------------

Inserts between block 8 and 9 in window
      Lesser Egyptian jerboa 261bp
B D                  Dolphin 77bp

Alignment block 9 of 147 in window, 63817254 - 63817258, 5 bps 
B D                     Human  ccac-c---
B D                     Chimp  ccac-c---
B D                   Gorilla  ccac-c---
B D                    Gibbon  ccac-c---
B D                    Rhesus  ccac-c---
B D       Crab-eating macaque  ccac-c---
B D                    Baboon  ccac-c---
B D              Green monkey  ccac-c---
B D                  Marmoset  ccac-c---
B D           Squirrel monkey  ccac-c---
B D                  Bushbaby  ccat-c---
           Chinese tree shrew  ctgc-c---
B D                  Squirrel  ccac-c---
B D            Naked mole-rat  ttac-c---
B D                Guinea pig  ccac-c---
                   Chinchilla  ccac-c---
B D                    Rabbit  ccac-c---
B D                    Alpaca  ccac-c---
               Bactrian camel  ccac-c---
B D                     Horse  ccac-c---
B D          White rhinoceros  ccac-c---
B D                       Cat  ctgc-c---
B D                       Dog  ctac-c---
B D                   Ferret   ccac-c---
B D                     Panda  ctac-c---
               Pacific walrus  ccac-c---
                 Weddell seal  ccac-c---
             Black flying-fox  ccat-c---
B D                   Megabat  ccat-c---
                Big brown bat  cctc-c---
         David's myotis (bat)  cctc-c---
B D                  Microbat  cctc-c---
B D                     Shrew  ccac-c---
              Star-nosed mole  ccac-c---
B D                  Elephant  ccac-c---
          Cape elephant shrew  ccac-c---
B D                   Manatee  ccac-c---
             Cape golden mole  ctgc-c---
B D                    Tenrec  ttacac---
B D                 Armadillo  ctgc-c---
B D           Tasmanian devil  ---c-cctt
B D                  Hedgehog  =========
B D                       Rat  =========
B D                     Mouse  =========
              Golden hamster  =========
B D           Chinese hamster  ---------
                Prairie vole  =========
            Tibetan antelope  ---------
               Domestic goat  ---------
B D                     Sheep  ---------
B D                       Cow  ---------
B D                      Pika  =========
      Lesser Egyptian jerboa  =========
            Brush-tailed rat  =========
                Killer whale  ---------
B D                   Dolphin  =========
      Yellowbelly pufferfish  =========
B D                      Fugu  =========
                    Aardvark  =========
B D               Stickleback  =========
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
         Princess of Burundi  =========
B D                    Medaka  =========
B D                Coelacanth  =========
B D                    Turkey  =========
                 Spotted gar  =========
  D              Mallard duck  =========
  D             Scarlet macaw  =========
  D                    Parrot  =========
B D                Budgerigar  =========
B D                   Wallaby  =========
  D    Spiny softshell turtle  =========
B D                    Lizard  =========
          Southern platyfish  =========
    Mexican tetra (cavefish)  ---------
  D          Peregrine falcon  =========
B D                 Zebrafish  =========
  D               Rock pigeon  =========
B D              Nile tilapia  =========
  D            Painted turtle  =========
B D                 Tetraodon  =========
B D                   Chicken  =========
B D              Atlantic cod  =========
  D       Collared flycatcher  =========
  D  Chinese softshell turtle  =========
B D               Zebra finch  =========
  D              Saker falcon  =========
B D             X. tropicalis  =========
  D           Green seaturtle  =========
B D       Medium ground finch  =========
B D                   Opossum  =========
B D        American alligator  =========
  D    White-throated sparrow  =========
          Tibetan ground jay  =========
B D                       Pig  ---------
B D                 Orangutan  ---------

Inserts between block 9 and 10 in window
B D                      Dog 169bp

Alignment block 10 of 147 in window, 63817259 - 63817259, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
B D           Squirrel monkey  t
B D                  Bushbaby  a
           Chinese tree shrew  t
B D                  Squirrel  t
B D            Naked mole-rat  t
B D                Guinea pig  t
                   Chinchilla  t
B D                    Rabbit  t
B D                    Alpaca  t
               Bactrian camel  t
B D                     Horse  t
B D          White rhinoceros  t
B D                       Cat  t
B D                   Ferret   t
B D                     Panda  t
               Pacific walrus  t
                 Weddell seal  t
             Black flying-fox  t
B D                   Megabat  t
                Big brown bat  t
         David's myotis (bat)  t
B D                  Microbat  t
B D                     Shrew  t
              Star-nosed mole  t
B D                  Elephant  t
          Cape elephant shrew  t
B D                   Manatee  t
             Cape golden mole  t
B D                    Tenrec  c
B D                 Armadillo  t
B D           Tasmanian devil  t
B D                  Hedgehog  =
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  =
B D           Chinese hamster  -
                Prairie vole  =
            Tibetan antelope  -
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
B D                      Pika  =
      Lesser Egyptian jerboa  =
            Brush-tailed rat  =
B D                       Dog  =
                Killer whale  -
B D                   Dolphin  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  -
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D                       Pig  -
B D                 Orangutan  -

Inserts between block 10 and 11 in window
B D           Naked mole-rat 1bp
B D               Guinea pig 430bp
                  Chinchilla 1bp

Alignment block 11 of 147 in window, 63817260 - 63817261, 2 bps 
B D                     Human  cc
B D                     Chimp  cc
B D                   Gorilla  cc
B D                 Orangutan  -c
B D                    Gibbon  cc
B D                    Rhesus  cc
B D       Crab-eating macaque  cc
B D                    Baboon  cc
B D              Green monkey  cc
B D                  Marmoset  cc
B D           Squirrel monkey  cc
B D                  Bushbaby  cc
           Chinese tree shrew  cc
B D                  Squirrel  -c
B D                    Rabbit  cc
B D                    Alpaca  cc
               Bactrian camel  cc
B D                     Horse  cc
B D          White rhinoceros  cc
B D                       Cat  ct
B D                   Ferret   cc
B D                     Panda  ct
               Pacific walrus  ct
                 Weddell seal  ct
             Black flying-fox  cc
B D                   Megabat  cc
                Big brown bat  ca
         David's myotis (bat)  ca
B D                  Microbat  ca
B D                     Shrew  tc
              Star-nosed mole  cc
B D                  Elephant  cc
          Cape elephant shrew  cg
B D                   Manatee  cc
             Cape golden mole  ca
B D                    Tenrec  cc
B D                 Armadillo  ac
B D           Tasmanian devil  ct
B D                  Hedgehog  ==
B D                Guinea pig  ==
B D                       Rat  ==
B D                     Mouse  ==
              Golden hamster  ==
B D           Chinese hamster  --
                Prairie vole  ==
            Tibetan antelope  --
               Domestic goat  --
B D                     Sheep  --
B D                       Cow  --
B D                      Pika  ==
                  Chinchilla  ==
      Lesser Egyptian jerboa  ==
            Brush-tailed rat  ==
B D                       Dog  ==
B D            Naked mole-rat  ==
                Killer whale  --
B D                   Dolphin  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
                    Aardvark  ==
B D               Stickleback  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D                    Medaka  ==
B D                Coelacanth  ==
B D                    Turkey  ==
                 Spotted gar  ==
  D              Mallard duck  ==
  D             Scarlet macaw  ==
  D                    Parrot  ==
B D                Budgerigar  ==
B D                   Wallaby  ==
  D    Spiny softshell turtle  ==
B D                    Lizard  ==
          Southern platyfish  ==
    Mexican tetra (cavefish)  --
  D          Peregrine falcon  ==
B D                 Zebrafish  ==
  D               Rock pigeon  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
B D              Atlantic cod  ==
  D       Collared flycatcher  ==
  D  Chinese softshell turtle  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D             X. tropicalis  ==
  D           Green seaturtle  ==
B D       Medium ground finch  ==
B D                   Opossum  ==
B D        American alligator  ==
  D    White-throated sparrow  ==
          Tibetan ground jay  ==
B D                       Pig  --

Inserts between block 11 and 12 in window
B D                   Rabbit 708bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                    Shrew 1bp
             Star-nosed mole 1bp
B D                 Elephant 1bp
         Cape elephant shrew 1bp
B D                  Manatee 1bp
            Cape golden mole 1bp
B D                   Tenrec 1bp
B D                Armadillo 1bp

Alignment block 12 of 147 in window, 63817262 - 63817262, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                  Bushbaby  a
           Chinese tree shrew  c
B D                  Squirrel  c
B D            Naked mole-rat  c
                   Chinchilla  c
B D           Tasmanian devil  c
B D                    Tenrec  =
B D                  Hedgehog  =
B D                Guinea pig  =
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  =
B D           Chinese hamster  -
                Prairie vole  =
B D                  Elephant  =
            Tibetan antelope  -
         Cape elephant shrew  =
B D                     Shrew  =
        David's myotis (bat)  =
B D                     Horse  =
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
B D                    Alpaca  =
             Star-nosed mole  =
B D                      Pika  =
B D                    Rabbit  =
B D                 Armadillo  =
B D                   Manatee  =
      Lesser Egyptian jerboa  =
B D          White rhinoceros  =
            Brush-tailed rat  =
              Pacific walrus  =
B D                       Dog  =
B D                       Cat  =
B D                  Microbat  =
               Big brown bat  =
                Killer whale  -
              Bactrian camel  =
B D                     Panda  =
            Black flying-fox  =
B D                   Ferret   =
            Cape golden mole  =
B D                   Dolphin  =
                Weddell seal  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  -
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D                   Megabat  =
B D                       Pig  -

Inserts between block 12 and 13 in window
          Chinese tree shrew 748bp
B D                 Squirrel 1bp
B D           Naked mole-rat 1bp
                  Chinchilla 1bp

Alignment block 13 of 147 in window, 63817263 - 63817264, 2 bps 
B D                     Human  ag
B D                     Chimp  ag
B D                   Gorilla  ag
B D                 Orangutan  ag
B D                    Gibbon  ag
B D                    Rhesus  ag
B D       Crab-eating macaque  ag
B D                    Baboon  ag
B D              Green monkey  ag
B D                  Marmoset  ag
B D           Squirrel monkey  ag
B D                  Bushbaby  ag
B D                  Squirrel  ag
B D            Naked mole-rat  ag
B D                Guinea pig  ag
                   Chinchilla  ag
B D                    Alpaca  tg
               Bactrian camel  tg
B D                     Horse  ag
B D          White rhinoceros  ag
B D                       Cat  ag
B D                   Ferret   ag
B D                     Panda  ag
               Pacific walrus  ag
                 Weddell seal  ag
             Black flying-fox  ag
B D                   Megabat  ag
                Big brown bat  ag
         David's myotis (bat)  ag
B D                  Microbat  ag
B D                     Shrew  ag
              Star-nosed mole  ca
B D                  Elephant  gg
          Cape elephant shrew  ag
B D                   Manatee  gg
             Cape golden mole  gg
B D                    Tenrec  ga
B D                 Armadillo  ag
B D           Tasmanian devil  ag
B D                  Hedgehog  ==
B D                       Rat  ==
B D                     Mouse  ==
              Golden hamster  ==
B D           Chinese hamster  --
                Prairie vole  ==
            Tibetan antelope  --
               Domestic goat  --
B D                     Sheep  --
B D                       Cow  --
B D                      Pika  ==
B D                    Rabbit  ==
      Lesser Egyptian jerboa  ==
            Brush-tailed rat  ==
          Chinese tree shrew  ==
B D                       Dog  ==
                Killer whale  --
B D                   Dolphin  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
                    Aardvark  ==
B D               Stickleback  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D                    Medaka  ==
B D                Coelacanth  ==
B D                    Turkey  ==
                 Spotted gar  ==
  D              Mallard duck  ==
  D             Scarlet macaw  ==
  D                    Parrot  ==
B D                Budgerigar  ==
B D                   Wallaby  ==
  D    Spiny softshell turtle  ==
B D                    Lizard  ==
          Southern platyfish  ==
    Mexican tetra (cavefish)  --
  D          Peregrine falcon  ==
B D                 Zebrafish  ==
  D               Rock pigeon  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
B D              Atlantic cod  ==
  D       Collared flycatcher  ==
  D  Chinese softshell turtle  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D             X. tropicalis  ==
  D           Green seaturtle  ==
B D       Medium ground finch  ==
B D                   Opossum  ==
B D        American alligator  ==
  D    White-throated sparrow  ==
          Tibetan ground jay  ==
B D                       Pig  --

Inserts between block 13 and 14 in window
B D                      Cat 136bp

Alignment block 14 of 147 in window, 63817265 - 63817265, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                    Rhesus  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                  Bushbaby  g
B D                  Squirrel  a
B D            Naked mole-rat  c
B D                Guinea pig  t
                   Chinchilla  g
B D                    Alpaca  g
               Bactrian camel  g
B D                     Horse  g
B D          White rhinoceros  g
B D                   Ferret   g
B D                     Panda  g
               Pacific walrus  g
                 Weddell seal  g
             Black flying-fox  g
B D                   Megabat  g
                Big brown bat  g
         David's myotis (bat)  g
B D                  Microbat  g
B D                     Shrew  g
              Star-nosed mole  g
B D                  Elephant  g
          Cape elephant shrew  g
B D                   Manatee  g
             Cape golden mole  g
B D                    Tenrec  a
B D                 Armadillo  g
B D                  Hedgehog  =
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  =
B D           Chinese hamster  -
                Prairie vole  =
            Tibetan antelope  -
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
B D                      Pika  =
B D                    Rabbit  =
      Lesser Egyptian jerboa  =
            Brush-tailed rat  =
          Chinese tree shrew  =
B D                       Dog  =
B D                       Cat  =
                Killer whale  -
B D                   Dolphin  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  -
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D                       Pig  -
B D           Tasmanian devil  -

Inserts between block 14 and 15 in window
B D                    Shrew 207bp

Alignment block 15 of 147 in window, 63817266 - 63817266, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
B D                  Squirrel  c
B D            Naked mole-rat  c
B D                Guinea pig  c
                   Chinchilla  c
B D                    Alpaca  c
               Bactrian camel  c
B D                     Horse  c
B D          White rhinoceros  c
B D                   Ferret   c
B D                     Panda  c
               Pacific walrus  c
                 Weddell seal  c
             Black flying-fox  c
B D                   Megabat  c
                Big brown bat  c
         David's myotis (bat)  c
B D                  Microbat  c
              Star-nosed mole  c
B D                  Elephant  c
          Cape elephant shrew  c
B D                   Manatee  c
             Cape golden mole  c
B D                    Tenrec  a
B D                 Armadillo  c
B D                  Hedgehog  =
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  =
B D           Chinese hamster  -
                Prairie vole  =
            Tibetan antelope  -
B D                     Shrew  =
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
B D                      Pika  =
B D                    Rabbit  =
      Lesser Egyptian jerboa  =
            Brush-tailed rat  =
          Chinese tree shrew  =
B D                       Dog  =
B D                       Cat  =
                Killer whale  -
B D                   Dolphin  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  -
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D                       Pig  -
B D           Tasmanian devil  -

Inserts between block 15 and 16 in window
B D                 Squirrel 708bp
B D                   Alpaca 128bp
B D                    Horse 203bp
B D         White rhinoceros 177bp
B D                    Panda 204bp
            Black flying-fox 173bp
B D                  Megabat 5bp
               Big brown bat 2bp
        David's myotis (bat) 2bp
B D                 Microbat 41bp
             Star-nosed mole 2bp
B D                 Elephant 570bp
         Cape elephant shrew 5bp
B D                  Manatee 576bp
            Cape golden mole 16bp
B D                   Tenrec 6bp

Alignment block 16 of 147 in window, 63817267 - 63817267, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                  Bushbaby  t
B D            Naked mole-rat  a
B D                Guinea pig  a
                   Chinchilla  a
          Cape elephant shrew  a
             Cape golden mole  a
B D                    Tenrec  a
B D                 Armadillo  a
B D                  Hedgehog  =
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  =
B D           Chinese hamster  -
                Prairie vole  =
B D                  Elephant  =
            Tibetan antelope  -
B D                     Shrew  =
        David's myotis (bat)  =
B D                     Horse  =
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
B D                    Alpaca  =
             Star-nosed mole  =
B D                  Squirrel  =
B D                      Pika  =
B D                    Rabbit  =
B D                   Manatee  =
      Lesser Egyptian jerboa  =
B D          White rhinoceros  =
            Brush-tailed rat  =
          Chinese tree shrew  =
              Pacific walrus  -
B D                       Dog  =
B D                       Cat  =
B D                  Microbat  =
               Big brown bat  =
                Killer whale  -
              Bactrian camel  -
B D                     Panda  =
            Black flying-fox  =
B D                   Ferret   -
B D                   Dolphin  =
                Weddell seal  -
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  -
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D                   Megabat  =
B D                       Pig  -
B D           Tasmanian devil  -

Inserts between block 16 and 17 in window
                  Chinchilla 537bp
         Cape elephant shrew 1bp
            Cape golden mole 1bp
B D                   Tenrec 1bp
B D                Armadillo 778bp

Alignment block 17 of 147 in window, 63817268 - 63817269, 2 bps 
B D                     Human  cc
B D                     Chimp  cc
B D                   Gorilla  cc
B D                 Orangutan  cc
B D                    Gibbon  cc
B D                    Rhesus  cc
B D       Crab-eating macaque  cc
B D                    Baboon  cc
B D              Green monkey  cc
B D                  Bushbaby  tc
B D            Naked mole-rat  tc
B D                Guinea pig  -c
B D                       Pig  c-
B D                   Ferret   t-
               Pacific walrus  t-
                 Weddell seal  t-
B D                   Megabat  t-
                Big brown bat  c-
         David's myotis (bat)  a-
              Star-nosed mole  t-
          Cape elephant shrew  a-
             Cape golden mole  t-
B D                    Tenrec  c-
B D                  Hedgehog  ==
B D                       Rat  ==
B D                     Mouse  ==
              Golden hamster  ==
B D           Chinese hamster  --
                Prairie vole  ==
B D                  Elephant  ==
            Tibetan antelope  --
B D                     Shrew  ==
B D                     Horse  ==
               Domestic goat  --
B D                     Sheep  --
B D                       Cow  --
B D                    Alpaca  ==
B D                  Squirrel  ==
B D                      Pika  ==
B D                    Rabbit  ==
B D                 Armadillo  ==
B D                   Manatee  ==
                  Chinchilla  ==
      Lesser Egyptian jerboa  ==
B D          White rhinoceros  ==
            Brush-tailed rat  ==
          Chinese tree shrew  ==
B D                       Dog  ==
B D                       Cat  ==
B D                  Microbat  ==
                Killer whale  --
              Bactrian camel  --
B D                     Panda  ==
            Black flying-fox  ==
B D                   Dolphin  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
                    Aardvark  ==
B D               Stickleback  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D                    Medaka  ==
B D                Coelacanth  ==
B D                    Turkey  ==
                 Spotted gar  ==
  D              Mallard duck  ==
  D             Scarlet macaw  ==
  D                    Parrot  ==
B D                Budgerigar  ==
B D                   Wallaby  ==
  D    Spiny softshell turtle  ==
B D                    Lizard  ==
          Southern platyfish  ==
    Mexican tetra (cavefish)  --
  D          Peregrine falcon  ==
B D                 Zebrafish  ==
  D               Rock pigeon  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                 Tetraodon  ==
B D                  Marmoset  --
B D                   Chicken  ==
B D              Atlantic cod  ==
  D       Collared flycatcher  ==
  D  Chinese softshell turtle  ==
B D           Squirrel monkey  --
B D               Zebra finch  ==
  D              Saker falcon  ==
B D             X. tropicalis  ==
  D           Green seaturtle  ==
B D       Medium ground finch  ==
B D                   Opossum  ==
B D        American alligator  ==
  D    White-throated sparrow  ==
          Tibetan ground jay  ==
B D           Tasmanian devil  --

Inserts between block 17 and 18 in window
B D                 Bushbaby 217bp
B D           Naked mole-rat 442bp
B D               Guinea pig 1bp
B D                      Pig 1bp
B D                  Ferret  1bp
              Pacific walrus 2bp
                Weddell seal 159bp
B D                  Megabat 167bp

Alignment block 18 of 147 in window, 63817270 - 63817271, 2 bps 
B D                     Human  ca
B D                     Chimp  ca
B D                   Gorilla  ca
B D                 Orangutan  ca
B D                    Gibbon  ca
B D                    Rhesus  ca
B D       Crab-eating macaque  ca
B D                    Baboon  ca
B D              Green monkey  ca
B D                  Bushbaby  ca
B D                       Pig  ca
               Pacific walrus  tg
              Star-nosed mole  ca
          Cape elephant shrew  tg
             Cape golden mole  ca
B D                    Tenrec  ca
B D                  Hedgehog  ==
B D                Guinea pig  ==
B D                       Rat  ==
B D                     Mouse  ==
              Golden hamster  ==
B D           Chinese hamster  --
                Prairie vole  ==
B D                  Elephant  ==
            Tibetan antelope  --
B D                     Shrew  ==
        David's myotis (bat)  --
B D                     Horse  ==
               Domestic goat  --
B D                     Sheep  --
B D                       Cow  --
B D                    Alpaca  ==
B D                  Squirrel  ==
B D                      Pika  ==
B D                    Rabbit  ==
B D                 Armadillo  ==
B D                   Manatee  ==
                  Chinchilla  ==
      Lesser Egyptian jerboa  ==
B D          White rhinoceros  ==
            Brush-tailed rat  ==
          Chinese tree shrew  ==
B D                       Dog  ==
B D                       Cat  ==
B D                  Microbat  ==
               Big brown bat  --
B D            Naked mole-rat  ==
                Killer whale  --
              Bactrian camel  --
B D                     Panda  ==
            Black flying-fox  ==
B D                   Ferret   ==
B D                   Dolphin  ==
                Weddell seal  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
                    Aardvark  ==
B D               Stickleback  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D                    Medaka  ==
B D                Coelacanth  ==
B D                    Turkey  ==
                 Spotted gar  ==
  D              Mallard duck  ==
  D             Scarlet macaw  ==
  D                    Parrot  ==
B D                Budgerigar  ==
B D                   Wallaby  ==
  D    Spiny softshell turtle  ==
B D                    Lizard  ==
          Southern platyfish  ==
    Mexican tetra (cavefish)  --
  D          Peregrine falcon  ==
B D                 Zebrafish  ==
  D               Rock pigeon  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                 Tetraodon  ==
B D                  Marmoset  --
B D                   Chicken  ==
B D              Atlantic cod  ==
  D       Collared flycatcher  ==
  D  Chinese softshell turtle  ==
B D           Squirrel monkey  --
B D               Zebra finch  ==
  D              Saker falcon  ==
B D             X. tropicalis  ==
  D           Green seaturtle  ==
B D       Medium ground finch  ==
B D                   Opossum  ==
B D        American alligator  ==
  D    White-throated sparrow  ==
          Tibetan ground jay  ==
B D                   Megabat  ==
B D           Tasmanian devil  --

Inserts between block 18 and 19 in window
              Pacific walrus 34bp

Alignment block 19 of 147 in window, 63817272 - 63817272, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Bushbaby  c
B D                Guinea pig  c
B D                       Pig  c
              Star-nosed mole  t
B D                    Tenrec  -
B D                  Hedgehog  =
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  =
B D           Chinese hamster  -
                Prairie vole  =
B D                  Elephant  =
            Tibetan antelope  -
         Cape elephant shrew  -
B D                     Shrew  =
        David's myotis (bat)  -
B D                     Horse  =
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
B D                    Alpaca  =
B D                  Squirrel  =
B D                      Pika  =
B D                    Rabbit  =
B D                 Armadillo  =
B D                   Manatee  =
                  Chinchilla  =
      Lesser Egyptian jerboa  =
B D          White rhinoceros  =
            Brush-tailed rat  =
          Chinese tree shrew  =
              Pacific walrus  =
B D                       Dog  =
B D                       Cat  =
B D                  Microbat  =
               Big brown bat  -
B D            Naked mole-rat  =
                Killer whale  -
              Bactrian camel  -
B D                     Panda  =
            Black flying-fox  =
B D                   Ferret   =
            Cape golden mole  -
B D                   Dolphin  =
                Weddell seal  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  -
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                  Marmoset  -
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D           Squirrel monkey  -
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D                   Megabat  =
B D           Tasmanian devil  -

Inserts between block 19 and 20 in window
             Star-nosed mole 134bp

Alignment block 20 of 147 in window, 63817273 - 63817273, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Bushbaby  c
B D                Guinea pig  c
B D                       Pig  c
B D                    Tenrec  -
B D                  Hedgehog  =
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  =
B D           Chinese hamster  -
                Prairie vole  =
B D                  Elephant  =
            Tibetan antelope  -
         Cape elephant shrew  -
B D                     Shrew  =
        David's myotis (bat)  -
B D                     Horse  =
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
B D                    Alpaca  =
             Star-nosed mole  =
B D                  Squirrel  =
B D                      Pika  =
B D                    Rabbit  =
B D                 Armadillo  =
B D                   Manatee  =
                  Chinchilla  =
      Lesser Egyptian jerboa  =
B D          White rhinoceros  =
            Brush-tailed rat  =
          Chinese tree shrew  =
              Pacific walrus  =
B D                       Dog  =
B D                       Cat  =
B D                  Microbat  =
               Big brown bat  -
B D            Naked mole-rat  =
                Killer whale  -
              Bactrian camel  -
B D                     Panda  =
            Black flying-fox  =
B D                   Ferret   =
            Cape golden mole  -
B D                   Dolphin  =
                Weddell seal  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  -
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                  Marmoset  -
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D           Squirrel monkey  -
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D                   Megabat  =
B D           Tasmanian devil  -

Inserts between block 20 and 21 in window
B D               Guinea pig 2bp

Alignment block 21 of 147 in window, 63817274 - 63817277, 4 bps 
B D                     Human  tcca
B D                     Chimp  tcca
B D                   Gorilla  tcca
B D                 Orangutan  ttca
B D                    Gibbon  tcca
B D                    Rhesus  tcca
B D       Crab-eating macaque  tcca
B D                    Baboon  tcca
B D              Green monkey  tcca
B D                  Bushbaby  ccca
B D            Naked mole-rat  -tca
B D                Guinea pig  gcca
                   Chinchilla  -tca
B D                       Pig  tcca
          Cape elephant shrew  ---a
             Cape golden mole  ---g
B D                    Tenrec  ---g
B D           Tasmanian devil  ---a
B D                  Hedgehog  ====
B D                       Rat  ====
B D                     Mouse  ====
              Golden hamster  ====
B D           Chinese hamster  ----
                Prairie vole  ====
B D                  Elephant  ====
            Tibetan antelope  ----
B D                     Shrew  ====
        David's myotis (bat)  ----
B D                     Horse  ====
               Domestic goat  ----
B D                     Sheep  ----
B D                       Cow  ----
B D                    Alpaca  ====
             Star-nosed mole  ====
B D                  Squirrel  ====
B D                      Pika  ====
B D                    Rabbit  ====
B D                 Armadillo  ====
B D                   Manatee  ====
      Lesser Egyptian jerboa  ====
B D          White rhinoceros  ====
            Brush-tailed rat  ====
          Chinese tree shrew  ====
              Pacific walrus  ====
B D                       Dog  ====
B D                       Cat  ====
B D                  Microbat  ====
               Big brown bat  ----
                Killer whale  ----
              Bactrian camel  ----
B D                     Panda  ====
            Black flying-fox  ====
B D                   Ferret   ====
B D                   Dolphin  ====
                Weddell seal  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
                    Aardvark  ====
B D               Stickleback  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D                    Medaka  ====
B D                Coelacanth  ====
B D                    Turkey  ====
                 Spotted gar  ====
  D              Mallard duck  ====
  D             Scarlet macaw  ====
  D                    Parrot  ====
B D                Budgerigar  ====
B D                   Wallaby  ====
  D    Spiny softshell turtle  ====
B D                    Lizard  ====
          Southern platyfish  ====
    Mexican tetra (cavefish)  ----
  D          Peregrine falcon  ====
B D                 Zebrafish  ====
  D               Rock pigeon  ====
B D              Nile tilapia  ====
  D            Painted turtle  ====
B D                 Tetraodon  ====
B D                  Marmoset  ----
B D                   Chicken  ====
B D              Atlantic cod  ====
  D       Collared flycatcher  ====
  D  Chinese softshell turtle  ====
B D           Squirrel monkey  ----
B D               Zebra finch  ====
  D              Saker falcon  ====
B D             X. tropicalis  ====
  D           Green seaturtle  ====
B D       Medium ground finch  ====
B D                   Opossum  ====
B D        American alligator  ====
  D    White-throated sparrow  ====
          Tibetan ground jay  ====
B D                   Megabat  ====

Inserts between block 21 and 22 in window
B D                 Bushbaby 30bp
B D           Naked mole-rat 1bp
B D               Guinea pig 1bp
                  Chinchilla 1bp

Alignment block 22 of 147 in window, 63817278 - 63817278, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  g
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Bushbaby  a
B D            Naked mole-rat  a
B D                Guinea pig  a
                   Chinchilla  a
             Brush-tailed rat  a
B D                       Pig  a
          Cape elephant shrew  g
             Cape golden mole  a
B D                    Tenrec  a
B D           Tasmanian devil  a
B D                  Hedgehog  =
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  =
B D           Chinese hamster  -
                Prairie vole  =
B D                  Elephant  =
            Tibetan antelope  -
B D                     Shrew  =
        David's myotis (bat)  -
B D                     Horse  =
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
B D                    Alpaca  =
             Star-nosed mole  =
B D                  Squirrel  =
B D                      Pika  =
B D                    Rabbit  =
B D                 Armadillo  =
B D                   Manatee  =
      Lesser Egyptian jerboa  =
B D          White rhinoceros  =
          Chinese tree shrew  =
              Pacific walrus  =
B D                       Dog  =
B D                       Cat  =
B D                  Microbat  =
               Big brown bat  -
                Killer whale  -
              Bactrian camel  -
B D                     Panda  =
            Black flying-fox  =
B D                   Ferret   =
B D                   Dolphin  =
                Weddell seal  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
                    Aardvark  =
B D               Stickleback  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D                    Medaka  =
B D                Coelacanth  =
B D                    Turkey  =
                 Spotted gar  =
  D              Mallard duck  =
  D             Scarlet macaw  =
  D                    Parrot  =
B D                Budgerigar  =
B D                   Wallaby  =
  D    Spiny softshell turtle  =
B D                    Lizard  =
          Southern platyfish  =
    Mexican tetra (cavefish)  -
  D          Peregrine falcon  =
B D                 Zebrafish  =
  D               Rock pigeon  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                 Tetraodon  =
B D                  Marmoset  -
B D                   Chicken  =
B D              Atlantic cod  =
  D       Collared flycatcher  =
  D  Chinese softshell turtle  =
B D           Squirrel monkey  -
B D               Zebra finch  =
  D              Saker falcon  =
B D             X. tropicalis  =
  D           Green seaturtle  =
B D       Medium ground finch  =
B D                   Opossum  =
B D        American alligator  =
  D    White-throated sparrow  =
          Tibetan ground jay  =
B D                   Megabat  =

Inserts between block 22 and 23 in window
B D                      Pig 166bp

Alignment block 23 of 147 in window, 63817279 - 63817281, 3 bps 
B D                     Human  -ctc
B D                     Chimp  -ctc
B D                   Gorilla  -ctc
B D                 Orangutan  -ctc
B D                    Gibbon  -ctc
B D                    Rhesus  -ctc
B D       Crab-eating macaque  -ctc
B D                    Baboon  -ctc
B D              Green monkey  -ctc
B D                  Marmoset  -ctc
B D           Squirrel monkey  -ctc
B D                  Bushbaby  -ttc
B D            Naked mole-rat  -ttt
B D                Guinea pig  -ttc
                   Chinchilla  -ttt
             Brush-tailed rat  -ttc
          Cape elephant shrew  -ctc
             Cape golden mole  -gtc
B D                    Tenrec  -ctc
B D           Tasmanian devil  aat-
B D                  Hedgehog  ====
B D                       Rat  ====
B D                     Mouse  ====
              Golden hamster  ====
B D           Chinese hamster  ----
                Prairie vole  ====
B D                  Elephant  ====
            Tibetan antelope  ----
B D                     Shrew  ====
        David's myotis (bat)  ----
B D                     Horse  ====
               Domestic goat  ----
B D                     Sheep  ----
B D                       Cow  ----
B D                    Alpaca  ====
             Star-nosed mole  ====
B D                  Squirrel  ====
B D                      Pika  ====
B D                    Rabbit  ====
B D                 Armadillo  ====
B D                   Manatee  ====
      Lesser Egyptian jerboa  ====
B D          White rhinoceros  ====
          Chinese tree shrew  ====
              Pacific walrus  ====
B D                       Dog  ====
B D                       Cat  ====
B D                  Microbat  ====
               Big brown bat  ----
                Killer whale  ----
              Bactrian camel  ----
B D                     Panda  ====
            Black flying-fox  ====
B D                   Ferret   ====
B D                   Dolphin  ====
                Weddell seal  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
                    Aardvark  ====
B D               Stickleback  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D                    Medaka  ====
B D                Coelacanth  ====
B D                    Turkey  ====
                 Spotted gar  ====
  D              Mallard duck  ====
  D             Scarlet macaw  ====
  D                    Parrot  ====
B D                Budgerigar  ====
B D                   Wallaby  ====
  D    Spiny softshell turtle  ====
B D                    Lizard  ====
          Southern platyfish  ====
    Mexican tetra (cavefish)  ----
  D          Peregrine falcon  ====
B D                 Zebrafish  ====
  D               Rock pigeon  ====
B D              Nile tilapia  ====
  D            Painted turtle  ====
B D                 Tetraodon  ====
B D                   Chicken  ====
B D              Atlantic cod  ====
  D       Collared flycatcher  ====
  D  Chinese softshell turtle  ====
B D               Zebra finch  ====
  D              Saker falcon  ====
B D             X. tropicalis  ====
  D           Green seaturtle  ====
B D       Medium ground finch  ====
B D                   Opossum  ====
B D        American alligator  ====
  D    White-throated sparrow  ====
          Tibetan ground jay  ====
B D                   Megabat  ====
B D                       Pig  ====

Alignment block 24 of 147 in window, 63817282 - 63817320, 39 bps 
B D                     Human  acttctgaag--caaaatttac-tgatagtc-----acactaa-ggtg
B D                     Chimp  acttctgaag--caaaatttac-tgatagtc-----acactaa-ggtg
B D                   Gorilla  acttctgaag--caaaatttac-tgatagtc-----acactaa-ggtg
B D                 Orangutan  acttctgaag--caaaatttac-tgatagtc-----acactaa-ggtg
B D                    Gibbon  aattctgaag--caaaatttaa-tgatagtc-----acactaa-ggtg
B D                    Rhesus  acttctgaag--caaaatgtac-tgatagtc-----acactaa-ggtg
B D       Crab-eating macaque  acttctgaag--caaaatgtac-tgatagtc-----acactaa-ggtg
B D                    Baboon  acttctgaag--caaaatgtac-tgatagtc-----acactaa-ggtg
B D              Green monkey  acttctgaag--caaaaggtac-tgatagtc-----acactaa-ggtg
B D                  Marmoset  acttctgaag--caaaatgtac-tgatagtc-----acactaa-ggtg
B D           Squirrel monkey  acttctgaag--caaaatgtac-tgatagtc-----acactaa-ggtg
B D                  Bushbaby  acttctgtag--caaaatacat-taataatg-----acactaa-gctg
B D            Naked mole-rat  acttctaagc--caaaatataa-ttatagtc-----acactaa-agtg
B D                Guinea pig  acttctaaac--caaaatacaa-ttgtaggc-----atactat-gtca
                   Chinchilla  acttctaaac--caaaatataa-ttgtagtc-----acactaa-agtg
             Brush-tailed rat  acttctaaac--caaaatacag-ttgtaatc-----acactac-aatg
B D                    Rabbit  acttctgacg--cccagtaca---ttcagtt-----acactaa-gctg
               Bactrian camel  -------------------------------tttcgtaatctg-gttg
             Tibetan antelope  ------------------------------------acatcaa-ggtg
B D                       Cow  ------------------------------------acatcaa-ggtg
B D                     Sheep  ------------------------------------acatcaa-ggtg
                Domestic goat  ------------------------------------acatcaa-ggtg
B D                   Ferret   ----------------------------tta-----taatcag-gttg
                Big brown bat  -----------------------------tg-----ctatctg-gttg
         David's myotis (bat)  -----------------------------cg-----ctatctg-gttg
          Cape elephant shrew  a------gag--tga--------tggccgtc-----tt----------
             Cape golden mole  acttttggag--aaatatattcatattcaca-----ttaataatgctg
B D                    Tenrec  atgattgaag--caaagtgtcc-taatcatc-----cctgtag-gctg
B D           Tasmanian devil  atttttaaaaacctaaaaatat---ataaga-----tcacaaa-ggaa
B D                  Hedgehog  ================================================
B D                       Rat  ================================================
B D                     Mouse  ================================================
              Golden hamster  ================================================
B D           Chinese hamster  ------------------------------------------------
                Prairie vole  ================================================
B D                  Elephant  ================================================
B D                     Shrew  ================================================
B D                     Horse  ================================================
B D                    Alpaca  ================================================
             Star-nosed mole  ================================================
B D                  Squirrel  ================================================
B D                      Pika  ================================================
B D                 Armadillo  ================================================
B D                   Manatee  ================================================
      Lesser Egyptian jerboa  ================================================
B D          White rhinoceros  ================================================
          Chinese tree shrew  ================================================
              Pacific walrus  ================================================
B D                       Dog  ================================================
B D                       Cat  ================================================
B D                  Microbat  ================================================
                Killer whale  ------------------------------------------------
B D                     Panda  ================================================
            Black flying-fox  ================================================
B D                   Dolphin  ================================================
                Weddell seal  ================================================
      Yellowbelly pufferfish  ================================================
B D                      Fugu  ================================================
                    Aardvark  ================================================
B D               Stickleback  ================================================
         Pundamilia nyererei  ================================================
                 Zebra mbuna  ================================================
       Burton's mouthbreeder  ================================================
         Princess of Burundi  ================================================
B D                    Medaka  ================================================
B D                Coelacanth  ================================================
B D                    Turkey  ================================================
                 Spotted gar  ================================================
  D              Mallard duck  ================================================
  D             Scarlet macaw  ================================================
  D                    Parrot  ================================================
B D                Budgerigar  ================================================
B D                   Wallaby  ================================================
  D    Spiny softshell turtle  ================================================
B D                    Lizard  ================================================
          Southern platyfish  ================================================
    Mexican tetra (cavefish)  ------------------------------------------------
  D          Peregrine falcon  ================================================
B D                 Zebrafish  ================================================
  D               Rock pigeon  ================================================
B D              Nile tilapia  ================================================
  D            Painted turtle  ================================================
B D                 Tetraodon  ================================================
B D                   Chicken  ================================================
B D              Atlantic cod  ================================================
  D       Collared flycatcher  ================================================
  D  Chinese softshell turtle  ================================================
B D               Zebra finch  ================================================
  D              Saker falcon  ================================================
B D             X. tropicalis  ================================================
  D           Green seaturtle  ================================================
B D       Medium ground finch  ================================================
B D                   Opossum  ================================================
B D        American alligator  ================================================
  D    White-throated sparrow  ================================================
          Tibetan ground jay  ================================================
B D                   Megabat  ================================================
B D                       Pig  ================================================

Inserts between block 24 and 25 in window
              Bactrian camel 5bp
            Tibetan antelope 47bp
B D                      Cow 95bp
               Domestic goat 47bp
B D                  Ferret  136bp
               Big brown bat 11bp
        David's myotis (bat) 11bp

Alignment block 25 of 147 in window, 63817321 - 63817330, 10 bps 
B D                     Human  aat-cga---taga----------
B D                     Chimp  aat-tga---taga----------
B D                   Gorilla  aat-cga---taga----------
B D                 Orangutan  aat-cga---taga----------
B D                    Gibbon  aat-cga---taga----------
B D                    Rhesus  aat-cga---taga----------
B D       Crab-eating macaque  aat-cga---taga----------
B D                    Baboon  aat-caa---caga----------
B D              Green monkey  aat-tga---taga----------
B D                  Marmoset  aat-cga---taga----------
B D           Squirrel monkey  aat-caa---caga----------
B D                  Bushbaby  aat-agaaactaaa----------
B D            Naked mole-rat  gct-aga---taga----------
B D                Guinea pig  attcagg---tta-----------
                   Chinchilla  act-aga---taaa----------
             Brush-tailed rat  act-aga---taga----------
B D                    Rabbit  agt-aga---taga----------
               Bactrian camel  aat-tgc---ca------------
             Cape golden mole  a-----a---cagg----------
B D                    Tenrec  agt-gga---aagg----------
B D           Tasmanian devil  ------a---taggtatctttgaa
B D                  Hedgehog  ========================
B D                       Rat  ========================
B D                     Mouse  ========================
              Golden hamster  ========================
B D           Chinese hamster  ------------------------
                Prairie vole  ========================
B D                  Elephant  ========================
            Tibetan antelope  ========================
         Cape elephant shrew  ------------------------
B D                     Shrew  ========================
        David's myotis (bat)  ========================
B D                     Horse  ========================
               Domestic goat  ========================
B D                     Sheep  ------------------------
B D                       Cow  ========================
B D                    Alpaca  ========================
             Star-nosed mole  ========================
B D                  Squirrel  ========================
B D                      Pika  ========================
B D                 Armadillo  ========================
B D                   Manatee  ========================
      Lesser Egyptian jerboa  ========================
B D          White rhinoceros  ========================
          Chinese tree shrew  ========================
              Pacific walrus  ========================
B D                       Dog  ========================
B D                       Cat  ========================
B D                  Microbat  ========================
               Big brown bat  ========================
                Killer whale  ------------------------
B D                     Panda  ========================
            Black flying-fox  ========================
B D                   Ferret   ========================
B D                   Dolphin  ========================
                Weddell seal  ========================
      Yellowbelly pufferfish  ========================
B D                      Fugu  ========================
                    Aardvark  ========================
B D               Stickleback  ========================
         Pundamilia nyererei  ========================
                 Zebra mbuna  ========================
       Burton's mouthbreeder  ========================
         Princess of Burundi  ========================
B D                    Medaka  ========================
B D                Coelacanth  ========================
B D                    Turkey  ========================
                 Spotted gar  ========================
  D              Mallard duck  ========================
  D             Scarlet macaw  ========================
  D                    Parrot  ========================
B D                Budgerigar  ========================
B D                   Wallaby  ========================
  D    Spiny softshell turtle  ========================
B D                    Lizard  ========================
          Southern platyfish  ========================
    Mexican tetra (cavefish)  ------------------------
  D          Peregrine falcon  ========================
B D                 Zebrafish  ========================
  D               Rock pigeon  ========================
B D              Nile tilapia  ========================
  D            Painted turtle  ========================
B D                 Tetraodon  ========================
B D                   Chicken  ========================
B D              Atlantic cod  ========================
  D       Collared flycatcher  ========================
  D  Chinese softshell turtle  ========================
B D               Zebra finch  ========================
  D              Saker falcon  ========================
B D             X. tropicalis  ========================
  D           Green seaturtle  ========================
B D       Medium ground finch  ========================
B D                   Opossum  ========================
B D        American alligator  ========================
  D    White-throated sparrow  ========================
          Tibetan ground jay  ========================
B D                   Megabat  ========================
B D                       Pig  ========================

Inserts between block 25 and 26 in window
B D                 Bushbaby 9bp
B D               Guinea pig 7bp
              Bactrian camel 3bp
            Cape golden mole 52bp
B D                   Tenrec 52bp

Alignment block 26 of 147 in window, 63817331 - 63817331, 1 bps 
B D                     Human  -a
B D                     Chimp  -a
B D                   Gorilla  -a
B D                 Orangutan  -a
B D                    Gibbon  -a
B D                    Rhesus  -a
B D       Crab-eating macaque  -a
B D                    Baboon  -a
B D              Green monkey  -a
B D                  Marmoset  -a
B D           Squirrel monkey  -a
B D                  Bushbaby  -a
B D            Naked mole-rat  -a
                   Chinchilla  -a
             Brush-tailed rat  -a
B D                    Rabbit  -a
B D                  Elephant  -a
B D                   Manatee  -a
             Cape golden mole  -g
B D                    Tenrec  -g
B D           Tasmanian devil  t-
B D                  Hedgehog  ==
B D                Guinea pig  ==
B D                       Rat  ==
B D                     Mouse  ==
              Golden hamster  ==
B D           Chinese hamster  --
                Prairie vole  ==
            Tibetan antelope  ==
         Cape elephant shrew  --
B D                     Shrew  ==
        David's myotis (bat)  ==
B D                     Horse  ==
               Domestic goat  ==
B D                     Sheep  --
B D                       Cow  ==
B D                    Alpaca  ==
             Star-nosed mole  ==
B D                  Squirrel  ==
B D                      Pika  ==
B D                 Armadillo  ==
      Lesser Egyptian jerboa  ==
B D          White rhinoceros  ==
          Chinese tree shrew  ==
              Pacific walrus  ==
B D                       Dog  ==
B D                       Cat  ==
B D                  Microbat  ==
               Big brown bat  ==
                Killer whale  --
              Bactrian camel  ==
B D                     Panda  ==
            Black flying-fox  ==
B D                   Ferret   ==
B D                   Dolphin  ==
                Weddell seal  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
                    Aardvark  ==
B D               Stickleback  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D                    Medaka  ==
B D                Coelacanth  ==
B D                    Turkey  ==
                 Spotted gar  ==
  D              Mallard duck  ==
  D             Scarlet macaw  ==
  D                    Parrot  ==
B D                Budgerigar  ==
B D                   Wallaby  ==
  D    Spiny softshell turtle  ==
B D                    Lizard  ==
          Southern platyfish  ==
    Mexican tetra (cavefish)  --
  D          Peregrine falcon  ==
B D                 Zebrafish  ==
  D               Rock pigeon  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
B D              Atlantic cod  ==
  D       Collared flycatcher  ==
  D  Chinese softshell turtle  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D             X. tropicalis  ==
  D           Green seaturtle  ==
B D       Medium ground finch  ==
B D                   Opossum  ==
B D        American alligator  ==
  D    White-throated sparrow  ==
          Tibetan ground jay  ==
B D                   Megabat  ==
B D                       Pig  ==

Inserts between block 26 and 27 in window
B D           Naked mole-rat 16bp
                  Chinchilla 16bp
            Brush-tailed rat 14bp
B D                   Rabbit 2bp

Alignment block 27 of 147 in window, 63817332 - 63817333, 2 bps 
B D                     Human  tg
B D                     Chimp  tg
B D                   Gorilla  tg
B D                 Orangutan  tg
B D                    Gibbon  tg
B D                    Rhesus  tg
B D       Crab-eating macaque  tg
B D                    Baboon  tg
B D              Green monkey  tg
B D                  Marmoset  tg
B D           Squirrel monkey  tg
B D                  Bushbaby  tt
       Lesser Egyptian jerboa  tc
B D            Naked mole-rat  tc
B D                Guinea pig  tt
                   Chinchilla  tc
             Brush-tailed rat  tc
B D                    Rabbit  ta
               Bactrian camel  tt
                Big brown bat  -t
         David's myotis (bat)  -t
B D                  Elephant  tc
          Cape elephant shrew  tc
B D                   Manatee  tc
             Cape golden mole  gt
B D                    Tenrec  gg
B D           Tasmanian devil  tt
B D                  Hedgehog  ==
B D                       Rat  ==
B D                     Mouse  ==
              Golden hamster  ==
B D           Chinese hamster  --
                Prairie vole  ==
            Tibetan antelope  ==
B D                     Shrew  ==
B D                     Horse  ==
               Domestic goat  ==
B D                     Sheep  --
B D                       Cow  ==
B D                    Alpaca  ==
             Star-nosed mole  ==
B D                  Squirrel  ==
B D                      Pika  ==
B D                 Armadillo  ==
B D          White rhinoceros  ==
          Chinese tree shrew  ==
              Pacific walrus  ==
B D                       Dog  ==
B D                       Cat  ==
B D                  Microbat  ==
                Killer whale  --
B D                     Panda  ==
            Black flying-fox  ==
B D                   Ferret   ==
B D                   Dolphin  ==
                Weddell seal  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
                    Aardvark  ==
B D               Stickleback  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D                    Medaka  ==
B D                Coelacanth  ==
B D                    Turkey  ==
                 Spotted gar  ==
  D              Mallard duck  ==
  D             Scarlet macaw  ==
  D                    Parrot  ==
B D                Budgerigar  ==
B D                   Wallaby  ==
  D    Spiny softshell turtle  ==
B D                    Lizard  ==
          Southern platyfish  ==
    Mexican tetra (cavefish)  --
  D          Peregrine falcon  ==
B D                 Zebrafish  ==
  D               Rock pigeon  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
B D              Atlantic cod  ==
  D       Collared flycatcher  ==
  D  Chinese softshell turtle  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D             X. tropicalis  ==
  D           Green seaturtle  ==
B D       Medium ground finch  ==
B D                   Opossum  ==
B D        American alligator  ==
  D    White-throated sparrow  ==
          Tibetan ground jay  ==
B D                   Megabat  ==
B D                       Pig  ==

Inserts between block 27 and 28 in window
              Bactrian camel 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp

Alignment block 28 of 147 in window, 63817334 - 63817334, 1 bps 
B D                     Human  -a
B D                     Chimp  -a
B D                   Gorilla  -a
B D                 Orangutan  -a
B D                    Gibbon  -a
B D                    Rhesus  -a
B D       Crab-eating macaque  -a
B D                    Baboon  -a
B D              Green monkey  -a
B D                  Marmoset  -a
B D           Squirrel monkey  -a
B D                  Bushbaby  -a
           Chinese tree shrew  -a
       Lesser Egyptian jerboa  -a
B D            Naked mole-rat  -g
B D                Guinea pig  -t
                   Chinchilla  -t
             Brush-tailed rat  -c
B D                    Rabbit  -a
B D                  Elephant  -a
          Cape elephant shrew  -t
B D                   Manatee  -a
             Cape golden mole  -g
B D                    Tenrec  -g
                     Aardvark  -a
B D           Tasmanian devil  c-
B D                  Hedgehog  ==
B D                       Rat  ==
B D                     Mouse  ==
              Golden hamster  ==
B D           Chinese hamster  --
                Prairie vole  ==
            Tibetan antelope  ==
B D                     Shrew  ==
        David's myotis (bat)  ==
B D                     Horse  ==
               Domestic goat  ==
B D                     Sheep  --
B D                       Cow  ==
B D                    Alpaca  ==
             Star-nosed mole  ==
B D                  Squirrel  ==
B D                      Pika  ==
B D                 Armadillo  ==
B D          White rhinoceros  ==
              Pacific walrus  ==
B D                       Dog  ==
B D                       Cat  ==
B D                  Microbat  ==
               Big brown bat  ==
                Killer whale  --
              Bactrian camel  ==
B D                     Panda  ==
            Black flying-fox  ==
B D                   Ferret   ==
B D                   Dolphin  ==
                Weddell seal  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D               Stickleback  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D                    Medaka  ==
B D                Coelacanth  ==
B D                    Turkey  ==
                 Spotted gar  ==
  D              Mallard duck  ==
  D             Scarlet macaw  ==
  D                    Parrot  ==
B D                Budgerigar  ==
B D                   Wallaby  ==
  D    Spiny softshell turtle  ==
B D                    Lizard  ==
          Southern platyfish  ==
    Mexican tetra (cavefish)  --
  D          Peregrine falcon  ==
B D                 Zebrafish  ==
  D               Rock pigeon  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
B D              Atlantic cod  ==
  D       Collared flycatcher  ==
  D  Chinese softshell turtle  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D             X. tropicalis  ==
  D           Green seaturtle  ==
B D       Medium ground finch  ==
B D                   Opossum  ==
B D        American alligator  ==
  D    White-throated sparrow  ==
          Tibetan ground jay  ==
B D                   Megabat  ==
B D                       Pig  ==

Inserts between block 28 and 29 in window
B D                   Rabbit 7bp

Alignment block 29 of 147 in window, 63817335 - 63817348, 14 bps 
B D                     Human  g---------ttcaagg-cag-------------------------------------------------
B D                     Chimp  g---------ttcaagg-cag-------------------------------------------------
B D                   Gorilla  g---------ttcaagg-cag-------------------------------------------------
B D                 Orangutan  g---------ttcaagg-cag-------------------------------------------------
B D                    Gibbon  g---------ttcaagg-cag-------------------------------------------------
B D                    Rhesus  g---------ttcaagg-cag-------------------------------------------------
B D       Crab-eating macaque  g---------ttcaagg-cag-------------------------------------------------
B D                    Baboon  g---------tttaagg-cag-------------------------------------------------
B D              Green monkey  g---------ttcaagg-cag-------------------------------------------------
B D                  Marmoset  g---------ttcaagg-cag-------------------------------------------------
B D           Squirrel monkey  g---------ttcaagg-cag-------------------------------------------------
B D                  Bushbaby  g---------ttcaaggttag-------------------------------------------------
           Chinese tree shrew  a---------tttaagg-caa-------------------------------------------------
       Lesser Egyptian jerboa  g---------ttcaagt-tgg-------------------------------------------------
B D            Naked mole-rat  g---------ctcaggt-tag-------------------------------------------------
B D                Guinea pig  ttagttttgctggggat-aaa-------------------------------------------------
                   Chinchilla  g---------ttcaggt-tag-------------------------------------------------
             Brush-tailed rat  t---------ttcaggt-tag-------------------------------------------------
B D                    Rabbit  g---------ttcgttt-ctg-------------------------------------------------
B D                      Pika  g---------ttcatgt-cag-------------------------------------------------
               Bactrian camel  a---------gctaaga-cat-------------------------------------------------
                 Killer whale  ----------tccaagg-----------------------------------------------------
B D                     Sheep  -----------ccaagg-----------------------------------------------------
                Big brown bat  a---------gctaaga-caa-------------------------------------------------
         David's myotis (bat)  a---------gctaaga-caa-------------------------------------------------
B D                  Elephant  c---------tccaagt-cag-------------------------------------------------
          Cape elephant shrew  g---------gttaaga-cag-------------ggg---------------------------------
B D                   Manatee  g---------tccaagt-cag-------------------------------------------------
             Cape golden mole  g---------tttgagc-ccactagctgttccacgggagaaaagaactagcataaagatttacaggctgg
B D                    Tenrec  g---------ttcaaac-ccaccagctgctctgtgggaaaaaaga-------------------------
                     Aardvark  g---------tccaagt-caa-------------------------------------------------
B D           Tasmanian devil  a---------ttcaata-taa-------------------------------------------------
B D                  Hedgehog  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
              Golden hamster  ======================================================================
B D           Chinese hamster  ----------------------------------------------------------------------
                Prairie vole  ======================================================================
            Tibetan antelope  ======================================================================
B D                     Shrew  ======================================================================
B D                     Horse  ======================================================================
               Domestic goat  ======================================================================
B D                       Cow  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  ======================================================================
B D                  Squirrel  ======================================================================
B D                 Armadillo  ======================================================================
B D          White rhinoceros  ======================================================================
              Pacific walrus  ======================================================================
B D                       Dog  ======================================================================
B D                       Cat  ======================================================================
B D                  Microbat  ======================================================================
B D                     Panda  ======================================================================
            Black flying-fox  ======================================================================
B D                   Ferret   ======================================================================
B D                   Dolphin  ======================================================================
                Weddell seal  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D               Stickleback  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D                    Medaka  ======================================================================
B D                Coelacanth  ======================================================================
B D                    Turkey  ======================================================================
                 Spotted gar  ======================================================================
  D              Mallard duck  ======================================================================
  D             Scarlet macaw  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
B D                   Wallaby  ======================================================================
  D    Spiny softshell turtle  ======================================================================
B D                    Lizard  ======================================================================
          Southern platyfish  ======================================================================
    Mexican tetra (cavefish)  ----------------------------------------------------------------------
  D          Peregrine falcon  ======================================================================
B D                 Zebrafish  ======================================================================
  D               Rock pigeon  ======================================================================
B D              Nile tilapia  ======================================================================
  D            Painted turtle  ======================================================================
B D                 Tetraodon  ======================================================================
B D                   Chicken  ======================================================================
B D              Atlantic cod  ======================================================================
  D       Collared flycatcher  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D               Zebra finch  ======================================================================
  D              Saker falcon  ======================================================================
B D             X. tropicalis  ======================================================================
  D           Green seaturtle  ======================================================================
B D       Medium ground finch  ======================================================================
B D                   Opossum  ======================================================================
B D        American alligator  ======================================================================
  D    White-throated sparrow  ======================================================================
          Tibetan ground jay  ======================================================================
B D                   Megabat  ======================================================================
B D                       Pig  ======================================================================

                        Human  --------------gtt
                        Chimp  --------------gtt
                      Gorilla  --------------gtt
                    Orangutan  --------------gtt
                       Gibbon  --------------gtt
                       Rhesus  --------------gtt
          Crab-eating macaque  --------------gtt
                       Baboon  --------------gtt
                 Green monkey  --------------gtt
                     Marmoset  --------------att
              Squirrel monkey  --------------att
                     Bushbaby  --------------gtt
           Chinese tree shrew  --------------gtt
       Lesser Egyptian jerboa  --------------gta
               Naked mole-rat  --------------gct
                   Guinea pig  --------------act
                   Chinchilla  --------------gct
             Brush-tailed rat  --------------gct
                       Rabbit  --------------gtt
                         Pika  --------------att
               Bactrian camel  --------------gtt
                 Killer whale  -----------------
                        Sheep  -----------------
                Big brown bat  --------------att
         David's myotis (bat)  --------------at-
                     Elephant  --------------gtc
          Cape elephant shrew  -------------agtc
                      Manatee  --------------gtt
             Cape golden mole  aaacggaataagtagtc
                       Tenrec  -------------agtc
                     Aardvark  --------------gtt
              Tasmanian devil  --------------tt-
                     Hedgehog  =================
                          Rat  =================
                        Mouse  =================
               Golden hamster  =================
              Chinese hamster  -----------------
                 Prairie vole  =================
             Tibetan antelope  =================
                        Shrew  =================
                        Horse  =================
                Domestic goat  =================
                          Cow  =================
                       Alpaca  =================
              Star-nosed mole  =================
                     Squirrel  =================
                    Armadillo  =================
             White rhinoceros  =================
               Pacific walrus  =================
                          Dog  =================
                          Cat  =================
                     Microbat  =================
                        Panda  =================
             Black flying-fox  =================
                      Ferret   =================
                      Dolphin  =================
                 Weddell seal  =================
       Yellowbelly pufferfish  =================
                         Fugu  =================
                  Stickleback  =================
          Pundamilia nyererei  =================
                  Zebra mbuna  =================
        Burton's mouthbreeder  =================
          Princess of Burundi  =================
                       Medaka  =================
                   Coelacanth  =================
                       Turkey  =================
                  Spotted gar  =================
                 Mallard duck  =================
                Scarlet macaw  =================
                       Parrot  =================
                   Budgerigar  =================
                      Wallaby  =================
       Spiny softshell turtle  =================
                       Lizard  =================
           Southern platyfish  =================
     Mexican tetra (cavefish)  -----------------
             Peregrine falcon  =================
                    Zebrafish  =================
                  Rock pigeon  =================
                 Nile tilapia  =================
               Painted turtle  =================
                    Tetraodon  =================
                      Chicken  =================
                 Atlantic cod  =================
          Collared flycatcher  =================
     Chinese softshell turtle  =================
                  Zebra finch  =================
                 Saker falcon  =================
                X. tropicalis  =================
              Green seaturtle  =================
          Medium ground finch  =================
                      Opossum  =================
           American alligator  =================
       White-throated sparrow  =================
           Tibetan ground jay  =================
                      Megabat  =================
                          Pig  =================

Inserts between block 29 and 30 in window
      Lesser Egyptian jerboa 40bp
B D           Naked mole-rat 61bp
B D               Guinea pig 29bp
                  Chinchilla 56bp
            Brush-tailed rat 42bp

Alignment block 30 of 147 in window, 63817349 - 63817379, 31 bps 
B D                     Human  -------------ttgc------t---gtcaaa-------c-----tt--aaa-----t------tgcag
B D                     Chimp  -------------ttgc------t---gtcaaa-------c-----tt--aaa-----t------ttcag
B D                   Gorilla  -------------ttgc------t---gtcaaa-------c-----tt--aaa-----t------ttcag
B D                 Orangutan  -------------ttgc------t---gtcaaa-------c-----tt--aaa-----t------ttcag
B D                    Gibbon  -------------ttgc------t---gtcaaa-------c-----tt--aaa-----t------ttcag
B D                    Rhesus  -------------ttgc------t---gtcaaa-------c-----tt--aaa-----t------ttcag
B D       Crab-eating macaque  -------------ttgc------t---gtcaaa-------c-----tt--aaa-----t------ttcag
B D                    Baboon  -------------ttgc------t---gtcaaa-------c-----tt--aaa-----t------ttcag
B D              Green monkey  -------------ttgc------t---gtcaaa-------c-----tt--aaa-----t------ttcag
B D                  Marmoset  -------------tggc------t---gtcaaa-------c-----tt--aaa-----tttagacttttg
B D           Squirrel monkey  -------------tggc------t---gtcaaa-------t-----tt--aaa-----tttagactttgg
B D                  Bushbaby  -------------ttgc------c---atcaaa-------c-----tttaaag-----t------ttttt
           Chinese tree shrew  -------------ttgc------t---ttcaaa-------t-----tt----a-----t------tctag
B D                  Squirrel  -------------ttgc------t---gtgaaa-------c-----tt----------t------ttcaa
       Lesser Egyptian jerboa  -------------tcac------t---ctgaag-------t-----ct--caggttggc------ttcaa
B D            Naked mole-rat  -------------ctac------t---attgaa-------c-----tg--caa-----t------cccag
B D                Guinea pig  -------------atac------t---attgag-------g-----tg--cag-----t------tccaa
                   Chinchilla  -------------ctac------t---actgag-------c-----tg--taa-----t------cccag
             Brush-tailed rat  -------------ctac------c---attgag-------c-----tg--caa-----t------cccaa
B D                    Rabbit  -------------ctgc------t---gtcaaa-------c-----tg--aaa-----------------
B D                      Pika  -------------ttgc------t---gtcaag-------t-----ta--aaa-----------------
               Bactrian camel  -------------tgac------t---cttgtg-------------------------------------
                Big brown bat  -------------tgat------t---ctgtatctcagga------------------------------
B D                  Elephant  -------------ttat------t---gtcaaa-------c-----tt----------------------
          Cape elephant shrew  -------------tgga------a---gtcaca-------c-----------------------------
B D                   Manatee  -------------ttgc------t---atcagt-------tttttttt----------------------
             Cape golden mole  -------------tta-----------gtcagg-------t-----tt----------------------
B D                    Tenrec  -------------t-------------gtcagg-------t-----tt----------------------
                     Aardvark  -------------ttacctatttt---tttaaa-------aaaattct----------------------
B D           Tasmanian devil  atgttaggagcccttgc------tccagacaac-------------------------------------
B D                  Hedgehog  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
              Golden hamster  ======================================================================
B D           Chinese hamster  ----------------------------------------------------------------------
                Prairie vole  ======================================================================
            Tibetan antelope  ======================================================================
B D                     Shrew  ======================================================================
        David's myotis (bat)  ----------------------------------------------------------------------
B D                     Horse  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ----------------------------------------------------------------------
B D                       Cow  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  ======================================================================
B D                 Armadillo  ======================================================================
B