Multiz Alignments of 100 Vertebrates
 

Capitalize exons based on show bases
Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 414 in window, 60913899 - 60913909, 11 bps 
B D                     Human  aatgccgagtg
B D                     Chimp  aatgccgagtg
B D                   Gorilla  aatgccgagtg
B D                 Orangutan  aatgccgagcg
B D                    Gibbon  aatgccgagcg
B D                    Rhesus  aatgccgagcg
B D       Crab-eating macaque  aatgccgagcg
B D                    Baboon  aatgccgagcg
B D              Green monkey  aatgccgagcg
B D                  Marmoset  aatgccaggcg
B D           Squirrel monkey  aatgccaggcg
B D                  Bushbaby  agtgcacagcg
           Chinese tree shrew  aatcccgagag
B D                  Squirrel  -------tg--
       Lesser Egyptian jerboa  agtaccccg--
                 Prairie vole  aatgcgtgg--
B D           Chinese hamster  aatgcgtgg--
               Golden hamster  aatgcgtgg--
B D                     Mouse  aatgcgttg--
B D                       Rat  aatgcgttg--
B D                    Rabbit  aatgacgagca
B D                      Pika  -----------
B D                       Pig  aatgccaaggg
B D                    Alpaca  aatgccaaggg
               Bactrian camel  aatgccaaggg
B D                   Dolphin  aatgccaaggg
                 Killer whale  aatgccaaggg
             Tibetan antelope  aatgccaaggg
B D                       Cow  aatgccaaggg
B D                     Sheep  gaagcga----
                Domestic goat  aatgccaaggg
B D                     Horse  aatgccgaggg
B D          White rhinoceros  aatgccgaggg
B D                       Cat  aatgctgaggg
B D                       Dog  aatgccgaggg
B D                   Ferret   gatgctgaggt
B D                     Panda  aatgctgaggt
               Pacific walrus  aatgctgaagt
                 Weddell seal  aatgctgaggt
             Black flying-fox  aatgccgaggg
B D                   Megabat  aatgccgaggg
                Big brown bat  aatgccggggc
         David's myotis (bat)  aatgccgaggc
B D                  Microbat  aatgccgaggc
B D                  Hedgehog  aatgccacggg
              Star-nosed mole  aatgcccaggg
B D                  Elephant  aatgctgaggg
          Cape elephant shrew  aatgccga--g
B D                   Manatee  aatgctgaggg
             Cape golden mole  aatgccgaagg
B D                    Tenrec  aatgccgaggg
                     Aardvark  aatgccgaggg
B D                 Armadillo  aactccgaggg
B D                     Shrew  ===========
            Brush-tailed rat  ===========
                  Chinchilla  ===========
B D                Guinea pig  ===========
B D            Naked mole-rat  ===========
                 Spotted gar  -----------
B D             X. tropicalis  ===========
B D                    Lizard  ===========
  D    Spiny softshell turtle  ===========
  D  Chinese softshell turtle  ===========
  D            Painted turtle  ===========
  D           Green seaturtle  ===========
B D                    Turkey  ===========
          Tibetan ground jay  ===========
B D               Zebra finch  ===========
B D       Medium ground finch  ===========
  D    White-throated sparrow  ===========
  D       Collared flycatcher  ===========
  D          Peregrine falcon  ===========
  D              Saker falcon  ===========
  D               Rock pigeon  ===========
B D                  Platypus  ===========
B D        American alligator  ===========
B D                   Opossum  ===========
B D           Tasmanian devil  ===========

Inserts between block 1 and 2 in window
B D                      Pig 2bp
B D                   Alpaca 8bp
              Bactrian camel 11bp
B D                  Dolphin 3bp
                Killer whale 3bp
            Tibetan antelope 465bp
B D                      Cow 17bp
B D                    Sheep 2bp
               Domestic goat 9bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                 Hedgehog 1bp
             Star-nosed mole 1bp

Alignment block 2 of 414 in window, 60913910 - 60913937, 28 bps 
B D                     Human  -gtggcaagaggag--g--attagcttccactc
B D                     Chimp  -gtggcaagaggag--g--attagcttccactc
B D                   Gorilla  -gt----------g--g--attagcttccactc
B D                 Orangutan  -gtggcaagagggg--g--attagcttccactc
B D                    Gibbon  -gtggcaagagggg--g--attagcttccactg
B D                    Rhesus  -gtggcaagagggg--g--attagcttccactc
B D       Crab-eating macaque  -gtggcaagagggg--g--attagcttccactc
B D                    Baboon  -gtggcaagagggg--g--attagcttccactc
B D              Green monkey  -gtggcaagtgggg--g--attagcttccactc
B D                  Marmoset  -gtggcaagaacgg--g--aatagcttccaccc
B D           Squirrel monkey  -gtggcaagaacgg--g--attagcttccaccc
B D                  Bushbaby  -gtcg-aagaggcg--a--attagctttgaccc
           Chinese tree shrew  -gtta-aagaagct--g--attcgcttcgac-c
B D                  Squirrel  ------ccgaggcg--g--atcagcttgcactc
       Lesser Egyptian jerboa  ------c-ggcttg--c--acacgcac------
                 Prairie vole  ------cagactcg--g--atcagcactgaaac
B D           Chinese hamster  ------caaactcg--g--atcagcaccgaatc
               Golden hamster  ------cagactcg--g--atcagcacctaatc
B D                     Mouse  ------tagactcg--g--atctgcaccgaatc
B D                       Rat  ------caggctcg--t--atctgcaccgaatc
B D                    Rabbit  -ctgg-aagaggcg--g--agtggcttccactc
B D                      Pika  ------agggggcg--g--cgggacgtcgaccc
B D                       Pig  -gtt--tgggggcg--g--ctaaacttccactc
B D                    Alpaca  -ttt--tagaggca--g--ataagcttccactc
               Bactrian camel  -ttt--tagaggca--g--ataagcttcccctc
B D                   Dolphin  -ttt--tagaggcg--g--ataagcttccactc
                 Killer whale  -ttt--tagaggcg--g--ataaggttccactc
             Tibetan antelope  --------gcagca--gcagcaagcttccattc
B D                       Cow  -ttt--aagaggca--g--ataagcttccattc
B D                     Sheep  -tag--cagccgca--gcagcaagcttccattc
                Domestic goat  -ttt--tagaggca--g--ataagcttccattc
B D                     Horse  -ctg--aagaggtg--g--ataggcttcgaccc
B D          White rhinoceros  -ctg--aagaggcg--g--ataggcttcgatcc
B D                       Cat  -ttg--aagagacg--g--cccggcttcgactc
B D                       Dog  -tcg--aagaaacg--g--gtgggcttcgactc
B D                   Ferret   -tcg--aagagatg--g--ataggcttcgactc
B D                     Panda  -tcg--aagaggct--g--ataggcttcgactc
               Pacific walrus  -ttg--aagagagg--g--ataggctttgactc
                 Weddell seal  -ttg--aagagagg--g--atgggctttgactc
             Black flying-fox  -cta--gagaggcg--g--ataggcttcgaccc
B D                   Megabat  -cta--gagaggcg--g--ataggcttcgaccc
                Big brown bat  -ctg--ga-gggcg--g--gtgggctttg-acc
         David's myotis (bat)  -ctg--gaggggcg--g--gtgggcttcgaacc
B D                  Microbat  -ctg--gaggggcg--g--gtgggcttcgaacc
B D                  Hedgehog  -gcg--aaggacgc--g--ctaagcttcgaccc
              Star-nosed mole  -cag--aagcggca--g--acgggcttcga--g
B D                  Elephant  gctg--gagaggtg--a--acggacttccaccc
          Cape elephant shrew  gtta--gaggcggg--a--attggcttcaacct
B D                   Manatee  gttg--gagaaggg--a--attgacttcgaccc
             Cape golden mole  gatt--gga-------c--attgacttctatcc
B D                    Tenrec  gctg--gggagaagcca--gttggcctccatcc
                     Aardvark  attg--tctaggcg--a--attggcttcgaccc
B D                 Armadillo  gctg--gggaggca--a--attggcttcgatcc
B D                     Shrew  =================================
            Brush-tailed rat  =================================
                  Chinchilla  =================================
B D                Guinea pig  =================================
B D            Naked mole-rat  =================================
                 Spotted gar  ---------------------------------
B D             X. tropicalis  =================================
B D                    Lizard  =================================
  D    Spiny softshell turtle  =================================
  D  Chinese softshell turtle  =================================
  D            Painted turtle  =================================
  D           Green seaturtle  =================================
B D                    Turkey  =================================
          Tibetan ground jay  =================================
B D               Zebra finch  =================================
B D       Medium ground finch  =================================
  D    White-throated sparrow  =================================
  D       Collared flycatcher  =================================
  D          Peregrine falcon  =================================
  D              Saker falcon  =================================
  D               Rock pigeon  =================================
B D                  Platypus  =================================
B D        American alligator  =================================
B D                   Opossum  =================================
B D           Tasmanian devil  =================================

Inserts between block 2 and 3 in window
               Domestic goat 556bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                 Hedgehog 1bp
             Star-nosed mole 1bp

Alignment block 3 of 414 in window, 60913938 - 60914093, 156 bps 
B D                     Human  cgatttca---aagatccag-----tttacccactc--------tacagccca-----------gat-a-
B D                     Chimp  cgatttca---aagatccag-----tttacccactc--------tacagccca-----------gat-a-
B D                   Gorilla  cgatttca---aagatccag-----tttacccactc--------tacagccca-----------gat-a-
B D                 Orangutan  cgatttca---aagatccag-----tttacccactc--------tacagccca-----------gat-a-
B D                    Gibbon  cgatttca---aagatccag-----tttacccactc--------tacagccca-----------gat-a-
B D                    Rhesus  cgatttca---aagatccag-----tttacccactc--------tgcagccca-----------cat-a-
B D       Crab-eating macaque  cgatttca---aagatccag-----tttacccactc--------tgcagccca-----------cat-a-
B D                    Baboon  cgatttca---aagatccag-----tttacccactc--------tgcagccca-----------cat-a-
B D              Green monkey  ccatttca---aagatctag-----tttacccactc--------tgcagccca-----------gat-a-
B D                  Marmoset  tgatatca---aacgtccag-----tttacccactt--------tacagctca-----------gat-a-
B D           Squirrel monkey  agagttca---aacatccag-----tgttcccattc--------tacagccca-----------gat-a-
B D                  Bushbaby  tgattttatttaagattcag-----ttttcccactc--------tatagccca-----------gat-a-
           Chinese tree shrew  agatttca---aaga-ccat-----gttacccacgc--------tacaaatca-----------gat-a-
B D                  Squirrel  -------------cacttcc-----aaaacccactc--------cgcagccca-----------cgt-a-
       Lesser Egyptian jerboa  -----acg---ctcatcaactgtggtcaatccattg--------tacagccca-----------gat-t-
                 Prairie vole  ctgcacca---aacaccgac-----tctacccacgc--------cacagcctc-----------gac-a-
B D           Chinese hamster  ccgaacca---aacaccgac-----tctaccaacgc--------cacagcttctttttttttttttt-t-
               Golden hamster  ccgaacca---aacaccgac-----actccctacgc--------cacggcttc-----------gat-a-
B D                     Mouse  ccgcatcg---agcaccaac-----tctacccacgc--------cacagcctc-----------gac-a-
B D                       Rat  ctgcaaca---agcaccaac-----tctacccatgc--------cacagcctc-----------gaaga-
B D                    Rabbit  catt-tca---aagatccag-----tttacccactc--------tataggcca-----------tag-t-
B D                      Pika  cagt-cc----aggacccag------tggccctctc--------cacagccca------gacctgac-t-
B D                       Pig  ctaattca---aagagccag-----tttacccactc--------tatcgccca-----------gat-a-
B D                    Alpaca  tgaattca---aagatccag-----tttacccactc--------tatagtcta-----------gat-a-
               Bactrian camel  tgaattca---aagatccag-----tttgccc--------------------a-----------gat-a-
B D                   Dolphin  caaatcca---aagatccag-----tttatccacgc--------tatagccca-----------gat-a-
                 Killer whale  caaatcca---aagatccag-----tttatccacgc--------tatagccca-----------gat-a-
             Tibetan antelope  caaattta---aaaatgaag-----tttacccactc--------tatagtcca-----------gat-a-
B D                       Cow  caaattaa---aaaatgaag-----tttacccactc--------tatagtcca-----------gat-a-
B D                     Sheep  caaattta---aaaatgaag-----tttacccactc--------tatagtcca-----------gat-a-
                Domestic goat  caaattta---aaaatgaag-----tttacccactc--------tatagtcca-----------gat-a-
B D                     Horse  aaa-ttcg---aagatccac-----tttacgcactc--------tacagtcca-----------gat-at
B D          White rhinoceros  aaa-ttca---aagatccag-----tttactcactt--------tacagccca-----------gct-at
B D                       Cat  gaatttca---aagattcag-----tttacttactg--------cacagctca-----------gat-a-
B D                       Dog  gaatttca---aagatccag-----tttatctactc--------cgcagccca-----------cat-a-
B D                   Ferret   gaatttcg---aagatccac-----tttatttactt--------cacacccca-----------gtt-a-
B D                     Panda  gaatttca---aagatccag-----tttatttactc--------cacagccta-----------gat-a-
               Pacific walrus  gaatttca---aagat-cag-----tttatttactt--------cacagccca-----------gat-a-
                 Weddell seal  gaatttca---aagat-cag-----tttacttactt--------cacaggcca-----------gat-a-
             Black flying-fox  caaattca---aagacctag-----tttatctactc--------taca-ccca-----------gat-a-
B D                   Megabat  caaattca---aagacctag-----tttatctactc--------taca-ccca-----------gat-a-
                Big brown bat  cgagct-----gagatgcag-----ctttcccaccc--------tacagccca-----------gcc-a-
         David's myotis (bat)  cgagttca---gagatgcag-----ctgacccaccc--------tgcagccca-----------gat-g-
B D                  Microbat  cgagttca---gagatgcag-----ctgacccaccc--------tgcagccca-----------gat-g-
B D                  Hedgehog  tacattca---gacatctaa-----tttacccactctcggtaagtagggttca-----------aac-a-
              Star-nosed mole  ggaatcca---aaggtccag-----tttacccaccc--------tacagccca-----------gat-a-
B D                  Elephant  gcatttaa---aa-atacag-----tttacccactc--------tacagccca-----------gat-g-
          Cape elephant shrew  ctatttaa---aagatacag-----ttttcccactc--------tacagctca-----------aat-a-
B D                   Manatee  cgatttca---aaaatacag-----tttacccactg--------tacagccca-----------gat-g-
             Cape golden mole  cgatttta---aagacactg-----cttactcactg--------tacagccta-----------gct-a-
B D                    Tenrec  ctatctca---aagatacag-----ttttcgcaccc--------tgcagccca-----------aat-g-
                     Aardvark  cgatatca---aagatacaa-----tttacccactg--------tacagccca-----------gat-a-
B D                 Armadillo  cgatttca---aagattcag-----ttgacttactc--------tacagccca-----------gac-a-
B D                     Shrew  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
B D                Guinea pig  ======================================================================
B D            Naked mole-rat  ======================================================================
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  ----t-agtcacttatttcccctttccagccagag-----acttccgttccctgc-tg-gaacttccga-
                        Chimp  ----t-agtcacttatttcccctttccagccagag-----acttccgttccctgc-tg-gaacttccga-
                      Gorilla  ----t-agtcacttatttcccctttccagccagag-----acttccgttccctgc-tg-gaacttctga-
                    Orangutan  ----t-actcacttatttcccctttccagccagag-----acttccgttccctgc-tg-gaacttccga-
                       Gibbon  ----t-agttacttatttcccctttccagccagag-----acttccgttccctgc-tg-gaacttccga-
                       Rhesus  ----t-agtcatttatttcccctttccagccagag-----acttccgttccctgc-tg-gaacttccga-
          Crab-eating macaque  ----t-agtcatttatttcccctttccagccagag-----acttccgttccctgc-tg-gaacttccga-
                       Baboon  ----t-agtcatttatttcccctttccagccagag-----acttccgttccctgc-tg-gaacttccga-
                 Green monkey  ----t-agtcatttatttctcctttccagccagag-----acttccgttctctgc-tg-gaacttccga-
                     Marmoset  ----t-agtcacttatttcccctttccagccagag-----acttccgttcctagc-tg-gaacttccga-
              Squirrel monkey  ----t-agtcacttatttccccttttcagtcagag-----acttccgttcccagc-tg-gaacttccga-
                     Bushbaby  ----t-ggtcacttattccccgtttcctgacagag-----acttccgttcccaac-tc-aaactcccgc-
           Chinese tree shrew  ----c-agtcactgatttcccctttcctgccagag-----acttccgtccccagc-tc-gaacttccga-
                     Squirrel  ----g-agtcacttttttcccctttcctgcctgag-----acttccgtt-cccacatc-caacatccga-
       Lesser Egyptian jerboa  ----agggttttttctttcccctttcctgtcgggg-----acttccgttatcagc-tc-gaacttccga-
                 Prairie vole  ----g--agtcatttttttccctttcctgccaaaggcttcgcttccgtt-ccagc-tc-caatttccga-
              Chinese hamster  ----t-------tttttttccctttcctgacaaaggcttcgcttccgtt-ccagc-tc-caatttccga-
               Golden hamster  ----g-------ttttttccccttttctgccaaaggctttgcttccgtt-ccagc-tc-caatttccga-
                        Mouse  ----g---ttctttctttcccctttcctgccaaaggcttcgcttccgtt-ccaac-tc-caatttccgg-
                          Rat  ----t---ttctttctttcccctttcctgccaaaggcttcgcttccgtt-ccaac-tc-caatatccga-
                       Rabbit  ----g-----gcctcctttccctttcctgccgggg-----acttccgtccccacc-tt-aaacttccga-
                         Pika  ----a-----gcttcgttcccctttcgtgccacag-----ccttccactgccgcc-cg-gagctcccgc-
                          Pig  ----t-actcacttctttcccctttcccgccaggg-----acttccgttcccagg-tc-aaacttccga-
                       Alpaca  ----t-agtcacttctttcctttttcctgccagaa-----aattccgttcccagc-tc-gaacttccga-
               Bactrian camel  ----t-agtcacttctttcctttttcctgccagaa-----aattccgttcccagc-tc-gaactt-cga-
                      Dolphin  ----t-agtcacctctttcccctttcctgccagag-----acttccgttcccagc-tc-gaacttccga-
                 Killer whale  ----t-agtcacctctttcccctttcctgccagag-----acttccgtttccagc-tc-gaacttccga-
             Tibetan antelope  ----t-agtca---ctttcccctttcctgccagag-----acttccgttcccagc-tc-gaacttccga-
                          Cow  ----t-agtca---ctttcccctttcctgccagag-----acttccgtttccagc-tc-gaacttccga-
                        Sheep  ----t-agtca---ctttcccctttcctgccagag-----acttccgttcccagc-tc-gaacttccga-
                Domestic goat  ----t-agtca---ctttcccctttcctgcc--ag-----acttccgttcccagc-tc-gaacttccga-
                        Horse  acagt-agtcacttctctcccctttcctgccagag-----acttccgttcccagc-tc-gaaattctga-
             White rhinoceros  acagt-agtcacttct-tctcctttcctgccagag-----acttccgttcccagc-tc-gaaattccga-
                          Cat  ----t-agccgcttcttccccctttcctgccagaa-----acttccgttcccagc-tc-gaacttctga-
                          Dog  ----t-agtcacgtctcctccttttcctgccagag-----acttccgttcccagc-tc-gaacttccga-
                      Ferret   ----t-agtcacttcttcccccgttcctgccagaa-----acttc---------------------cga-
                        Panda  ----t-agtcacttcttccccctttcctgccagaa-----acttctgttcccagc-tc-gaactt-cga-
               Pacific walrus  ----c-agtcactcctttcccctttcctgccagaa-----acttccgttcccagc-tc-aaacttccga-
                 Weddell seal  ----t-agtcactccttccccctttcctgccagaa-----acttccgttcccagc-tc-aaacttccga-
             Black flying-fox  ----t-ggtcacttctgtcccctttcccgccagag-----acttccgttcccagc-ta-gaacttccga-
                      Megabat  ----t-ggtcacttctgtcccctttcccgccagag-----acttccgttcccagc-ta-gaacttccga-
                Big brown bat  ----g-ggtcacgcctttcccctttcccgcc--ac-----gtttccgctcccagc-tc-cggccgccca-
         David's myotis (bat)  ----t-ggtcacgcctttcccctttcccgcc--ag-----acttccgttcccagc-tc-gagccgccca-
                     Microbat  ----t-ggtcacgcctttcccctttcccgcc--ag-----acttccgttcccagc-tc-gagccgccca-
                     Hedgehog  ----g-ca--atttcttatccttttcctgcca-aa-----acttccgttcttggg-tc-gaacttccgac
              Star-nosed mole  ----t-aatcacttctgtcccctttcctgccagag-----acttccgttcccagc-tc-caacttccga-
                     Elephant  ----c-agtcatttctttcccctttcctgccagag-----acttccgttcccagc-tc-gaacttccga-
          Cape elephant shrew  ----c-agtcacttcttttccctttcctgccagaa-----acttccgttctcggc-tt-gaatttccga-
                      Manatee  ----t-agtcacttctttcccctttcctgccagag-----acttccgttcccagc-tc-gaacttccga-
             Cape golden mole  ----t-agtcacttttccccctttccctatcagag-----acttccgtcccgagc-tc-taacttccga-
                       Tenrec  ----t-agccacttctttcccctttccttgcagag-----gcttccgttcccagc-ttgtaacttccga-
                     Aardvark  ----t-agtcacttctttcccgtttcccgccagag-----acttccgctcccaga-t--gaacttccga-
                    Armadillo  ----t-agtcacttctttcgcctttcctgccagag-----atttccgttcccagc-tc-gaacttccga-
                        Shrew  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  tccc-attctt-ctct-----cg-gtgg-------gaatgct-----------tgt--------g-----
                        Chimp  tccc-attctt-ctct-----cg-gtgg-------gaatgct-----------tgt--------g-----
                      Gorilla  tccc-attctt-ccct-----cg-gtgg-------gaatgct-----------tgt--------g-----
                    Orangutan  tccc-attctt-ctct-----cg-gtgg-------gaatgct-----------tgt-------gg-----
                       Gibbon  tccc-attctt-ctct-----cg-gtgg-------gaatgct-----------tgt-------cg-----
                       Rhesus  tccc-attctt-ctct-----cg-gtgg-------gaatgct-----------tgt--------------
          Crab-eating macaque  tccc-attctt-ctct-----cg-gtgg-------gaatgct-----------tgt--------------
                       Baboon  tccc-attctt-ctct-----cg-gtgg-------gaatgct-----------tgt--------------
                 Green monkey  tctc-attctt-ctct-----ca-gtgg-------gaatgct-----------tgt--------------
                     Marmoset  tccc-attctt-ctct-----cg-gtgg-------gaatgct-----------cgc--------g-----
              Squirrel monkey  tccc-a------ctct-----tg-gtgg-------gaatgct-----------tgc--------g-----
                     Bushbaby  tctc-attctt-ctac-----gg-gtgg-------gaacgat-----------tgt--------------
           Chinese tree shrew  tacc-a---tt-ctct-----ca-gtgg-------gaaagtt-----------gaa--------------
                     Squirrel  tccc-attctt-ctct-----ag-gtgg-------gaatgctaggcgggcgggtgg--------------
       Lesser Egyptian jerboa  ttgt-attcttggtgt---------tgg-------gaatgct-----------tag--------------
                 Prairie vole  cgcc-attctt-ctct---------agg-------aaaagct-----------tgg--------------
              Chinese hamster  cgcc-attctt-ctct---------tgg-------aaatgct-----------tgg--------------
               Golden hamster  cgcc-attctt-ccct---------tgg-------aaaagct-----------tgg--------------
                        Mouse  cgcc-attctt-ctct---------tgg-------aaatatt-----------tgg--------------
                          Rat  cgcc-attctt-ctct---------tgg-------aaatact-----------tgg--------------
                       Rabbit  tcgc-attctt-ttct-----ct-gtag-------ctgtgct-----------tgg--------------
                         Pika  tcgc-attctt-ccct---cgct-gtgggaacctccggcggg-----------cgg--------------
                          Pig  cccc-attctt-ctct-----gg-gtgg-------aaatgct-----------tgg--------------
                       Alpaca  cccc-a---tt-ctct-----gg-gtgg-------gaatgca-----------tga--------------
               Bactrian camel  cccc-a---tt-ctct-----gg-atgg-------gaacgca-----------tgg--------------
                      Dolphin  cccc-attctt-ctct-----cc-gtgg-------gaatgct-----------tgg--------------
                 Killer whale  cccc-attctt-ctct-----cc-gtgg-------gaatgct-----------tgg--------------
             Tibetan antelope  ctcc-attatt-ctcc-----cc-gtgg-------gaatgcc-----------tag--------------
                          Cow  ctcc-attatt-ctcc-----cg-gtgg-------gaatgcc-----------tgg--------------
                        Sheep  ctcc-attatt-ctcc-----cg-gtgg-------gaatgcc-----------aag--------------
                Domestic goat  ctcc-attatt-ctcc-----tg-gtgg-------gaatgcc-----------aag--------------
                        Horse  tctc-aatttc-ctct-----cg-atag-------gaatgct-----------tcg--------------
             White rhinoceros  tctc-actctt-ctct-----cg-ggag-------gaatgct-----------tgg--------------
                          Cat  tccc-actctt--ttt-----tg-gtgg-------gaatgct-----------cggt----gggg-----
                          Dog  ttccaactctt--ttt-----cg-gtgg-------gaatgct-----------cgggtagtgggg-----
                      Ferret   tctc-actctt--ttt-----cg-gtgg-------gaatgct-----------t----------------
                        Panda  tcct-actctt--ttt-----cg-gtgg-------gaaagct-----------ggg--------------
               Pacific walrus  tccc-actctt--ttt-----cg-gtgg-------gaaggct-----------tggttg--ggaa-----
                 Weddell seal  tccc-actctt--ttt-----cg-gtgg-------gaatgct-----------tggttg--ggaa-----
             Black flying-fox  tccc-accctt-ctcc-----ct-gtgg-------gaaaggc-----------t----------------
                      Megabat  tccc-accctt-ctcc-----ct-gtgg-------gaaaggc-----------t----------------
                Big brown bat  cccc-gccgcg-ctcc-----cg-gtgg-------gaaagct-----------c-g--------------
         David's myotis (bat)  cccc-acggcg-ctcc-----cg-gtgg-------gaaagct-----------cgg--------------
                     Microbat  cccc-ccggcg-ctcc-----cg-gtgg-------gaaagct-----------c-g--------------
                     Hedgehog  tccc-attatt-cgctggaggcg-gcga-------gagggtg-----------gga--------------
              Star-nosed mole  tccc-attctt-cgcc-----tg-gtgc-------gaacgct-----------cag--------------
                     Elephant  tccc-attctt-ctct-----ccggtgg-------gattgct-----------tgg-------ggcgggg
          Cape elephant shrew  ctcc-attctt-c-ct-----ttggtgg-------gaatgtt-----------tgg-------gg-----
                      Manatee  tccc-attctt-ctct-----cgggtgg-------gattgct-----------tgg-------gg----g
             Cape golden mole  tttc-attcat-ctat-----cg-----------------------------------------g-----
                       Tenrec  ttcc-attcgt-ttct-----cg-gtgc-------gattgtt-----------tag-------ag-----
                     Aardvark  tccc-gttttt-ctct-----ag-gtgg-------gaatgct-----------cgg-------gg----t
                    Armadillo  tccc-attctt-ctct-----tg-ctgt-------gaacgct-----------tgg-------gg---cg
                        Shrew  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  --ggg-gg----------aa----------------aa-ag----------------------------a
                        Chimp  --ggg-gt----------aa----------------aa-ag----------------------------a
                      Gorilla  --ggg-gg----------aa----------------aa-ag----------------------------a
                    Orangutan  --ggg-gg----------aa----------------aa-ag----------------------------a
                       Gibbon  --ggg-gg----------aa----------------aa-ag----------------------------a
                       Rhesus  --ggg-ga----------aa----------------aa-ag----------------------------a
          Crab-eating macaque  --ggg-ga----------aa----------------aa-ag----------------------------a
                       Baboon  --ggg-ga----------aa----------------aa-ag----------------------------a
                 Green monkey  --ggg-ga----------aa----------------aa-ag----------------------------a
                     Marmoset  --tgg-gg----------aa----------------aa-ag----------------------------a
              Squirrel monkey  --tgg-gg----------aa----------------aa-ag----------------------------a
                     Bushbaby  --ggg-tt----------tg----------------ga-ag-----------------------------
           Chinese tree shrew  ---------------------------------------------------------------------g
                     Squirrel  --ggg-gg----------gg----------------gc-gg----------------------------a
       Lesser Egyptian jerboa  --gaa-aa----------ta----------------aa-ag----------------------------a
                 Prairie vole  --gag-gg----------aa----------------ac-ag----------------------------a
              Chinese hamster  --gag-gg----------aa------------gcacac-ac----------------------------a
               Golden hamster  --gag-gg----------aa----------------ac-gc----------------------------a
                        Mouse  --gag-gg----------aa----------------aa--a----------------------------a
                          Rat  --gag-gg----------aa----------------ac--c----------------------------a
                       Rabbit  --cgc-gg----------tg--------------------------------------------------
                         Pika  --cgc-ag----------cgggccgggagcca--------------------------------------
                          Pig  ------ga----------aa----------------aa-ac----------------------------g
                       Alpaca  ------gg----------aa----------------aa-ac----------------------------g
               Bactrian camel  ------gg----------ca----------------aa-ac----------------------------a
                      Dolphin  ------ga----------aa----------------aaaag----------------------------g
                 Killer whale  ------ga----------aa----------------aaaag----------------------------g
             Tibetan antelope  ------ga----------ta----------------aatac----------------------------g
                          Cow  ------ga----------ta----------------aatac----------------------------g
                        Sheep  ------ga----------ta----------------aatac----------------------------g
                Domestic goat  ------ga----------ta----------------aatac----------------------------g
                        Horse  ------gg----------aa----------------aa-ac----------------------------g
             White rhinoceros  ------gggaa------aaa----------------aa-ac----------------------------g
                          Cat  --gtg-gacagcggggggag----------------aa-ac----------------------------g
                          Dog  --ggg-ggggggggggtcgc----------------aa-ag----------------------------g
                      Ferret   ------gggggtggggtggg----------------aa-tc----------------------------g
                        Panda  ---gg-gggggggggaaagg----------------ta-ac----------------------------g
               Pacific walrus  --agg-ggggatggggtggc----------------aa-cc----------------------------g
                 Weddell seal  --aggagggggtggggtggc----------------aa-cc----------------------------g
             Black flying-fox  ------gg----------aa----------------aa-ca----------------------------a
                      Megabat  ------gg----------aa----------------aa-ca----------------------------a
                Big brown bat  ------gg----------aa----------------aa-ac----------------------------a
         David's myotis (bat)  ------gg----------aa----------------aa-ac----------------------------a
                     Microbat  ------gg----------aa----------------aa-ac----------------------------a
                     Hedgehog  ------gg----------ga----------------ag-a------------------------------
              Star-nosed mole  ------gg----------aa----------------aa-ac----------------------------g
                     Elephant  gcggg-gg----------tg----------------gg-ga----------------------------g
          Cape elephant shrew  --gaa-gg----------gg----------------at-ca----------------------------c
                      Manatee  ggggg-gg----------gg----------------aa-ga----------------------------g
             Cape golden mole  --gag-gg----------aa----------------aa-aaacaaaac--------------------cg
                       Tenrec  --gag-ag----------aa----------------aa-aacaaaaacaaacccaaaaaccagcacaacg
                     Aardvark  ggggg-gt----------gg----------------aa-ag----------------------------g
                    Armadillo  ggaaa-aa----------aa----------------aa-aa----------------------------g
                        Shrew  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  a----acgcaatag-ata--aa
                        Chimp  a----acgcaatag-ata--aa
                      Gorilla  a----acgcaatag-ata--aa
                    Orangutan  a----acgcaatag-ata--aa
                       Gibbon  a----acgcaatag-ata--aa
                       Rhesus  a----acgcaatag-ata--aa
          Crab-eating macaque  a----acgcaatag-ata--aa
                       Baboon  a----acgcaatag-ata--aa
                 Green monkey  a----acgcaatag-ata--aa
                     Marmoset  a----acgcaatag-ata--ac
              Squirrel monkey  a----acgcaatag-ata--ag
                     Bushbaby  ----------------------
           Chinese tree shrew  a----acgcaa----aga--gg
                     Squirrel  t----aagaacgcg-gcaggta
       Lesser Egyptian jerboa  a----aaagaaaaa-aaa--aa
                 Prairie vole  c----acacacaaa-cca--ta
              Chinese hamster  c----acacacaag-cca--ta
               Golden hamster  t----acacacaaa-cca--ta
                        Mouse  c----acgtacaaa-cca--ta
                          Rat  ctactacatgcaaa-ccg--ta
                       Rabbit  ----------------------
                         Pika  ----------------------
                          Pig  t----aatca-gag-g------
                       Alpaca  t----acgcc-tag-a------
               Bactrian camel  t----agtcc-tag-a------
                      Dolphin  t----aatca-gag-g------
                 Killer whale  t----aatca-gag-g------
             Tibetan antelope  c----aagcg-gag-a------
                          Cow  c----aagcg-gag-a------
                        Sheep  c----aagcg-gag-a------
                Domestic goat  c----aagcg-gag-a------
                        Horse  t----aatggagaa-g------
             White rhinoceros  t----aatcgagag-a------
                          Cat  t----gatcaagag-g------
                          Dog  t----gagcaa-ag-g------
                      Ferret   t----gagcaagag-g------
                        Panda  t----gatcaagag-g------
               Pacific walrus  t----gatcaagag--------
                 Weddell seal  t----gattaagag-g------
             Black flying-fox  a----aattgagag-g------
                      Megabat  a----aattgagag-g------
                Big brown bat  c----cggcgggag-g------
         David's myotis (bat)  c----cgtcgggag-g------
                     Microbat  c----catcgggag-g------
                     Hedgehog  --------ggcgcgtg------
              Star-nosed mole  t----catggagcg-a------
                     Elephant  t----aatctagag-g------
          Cape elephant shrew  c----aacagaggg-t------
                      Manatee  t----catcaagtg-g------
             Cape golden mole  t----aatcgagag-c------
                       Tenrec  t----aatctgaag-g------
                     Aardvark  g----aatggagag-c------
                    Armadillo  t----aatcaagaa-g------
                        Shrew  ======================
             Brush-tailed rat  ======================
                   Chinchilla  ======================
                   Guinea pig  ======================
               Naked mole-rat  ======================
                  Spotted gar  ----------------------
                X. tropicalis  ======================
                       Lizard  ======================
       Spiny softshell turtle  ======================
     Chinese softshell turtle  ======================
               Painted turtle  ======================
              Green seaturtle  ======================
                       Turkey  ======================
           Tibetan ground jay  ======================
                  Zebra finch  ======================
          Medium ground finch  ======================
       White-throated sparrow  ======================
          Collared flycatcher  ======================
             Peregrine falcon  ======================
                 Saker falcon  ======================
                  Rock pigeon  ======================
                     Platypus  ======================
           American alligator  ======================
                      Opossum  ======================
              Tasmanian devil  ======================

Inserts between block 3 and 4 in window
      Lesser Egyptian jerboa 435bp
                Prairie vole 9bp
B D          Chinese hamster 9bp
              Golden hamster 9bp
B D                    Mouse 9bp
B D                      Rat 9bp

Alignment block 4 of 414 in window, 60914094 - 60914094, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                    Rhesus  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  g
B D           Squirrel monkey  g
           Chinese tree shrew  g
       Lesser Egyptian jerboa  g
                 Prairie vole  g
B D           Chinese hamster  g
               Golden hamster  g
B D                     Mouse  g
B D                       Rat  g
             Brush-tailed rat  g
B D                    Rabbit  g
B D                      Pika  g
B D                       Pig  g
B D                    Alpaca  a
               Bactrian camel  a
B D                   Dolphin  g
                 Killer whale  g
             Tibetan antelope  g
B D                       Cow  g
B D                     Sheep  a
                Domestic goat  g
B D                     Horse  g
B D          White rhinoceros  g
B D                       Cat  a
B D                       Dog  g
B D                   Ferret   g
B D                     Panda  g
                 Weddell seal  g
             Black flying-fox  g
B D                   Megabat  g
                Big brown bat  g
         David's myotis (bat)  g
B D                  Microbat  a
B D                  Hedgehog  g
              Star-nosed mole  g
B D                  Elephant  c
          Cape elephant shrew  g
B D                   Manatee  g
             Cape golden mole  g
B D                    Tenrec  g
                     Aardvark  g
B D                 Armadillo  g
B D                  Platypus  g
B D                     Shrew  =
                  Chinchilla  =
B D                Guinea pig  =
B D                  Squirrel  -
B D            Naked mole-rat  =
              Pacific walrus  -
                 Spotted gar  -
B D             X. tropicalis  =
B D                    Lizard  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D                    Turkey  =
          Tibetan ground jay  =
B D               Zebra finch  =
B D       Medium ground finch  =
  D    White-throated sparrow  =
  D       Collared flycatcher  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D               Rock pigeon  =
B D        American alligator  =
B D                   Opossum  =
B D           Tasmanian devil  =
B D                  Bushbaby  -

Inserts between block 4 and 5 in window
B D                   Rabbit 4bp
B D                     Pika 4bp

Alignment block 5 of 414 in window, 60914095 - 60914105, 11 bps 
B D                     Human  ----cggggcgcatg
B D                     Chimp  ----cggggcgcatg
B D                   Gorilla  ----cggggcgcatg
B D                 Orangutan  ----cgaggcgcatg
B D                    Gibbon  ----cggggcgcatg
B D                    Rhesus  ----cggggcgcatg
B D       Crab-eating macaque  ----cggggcgcatg
B D                    Baboon  ----cggggcgcatg
B D              Green monkey  ----cggggcgcatg
B D                  Marmoset  ----cgaggcgcctg
B D           Squirrel monkey  ----cgaggcgcatg
           Chinese tree shrew  ----caaagcgcatg
B D                  Squirrel  ------gggcgcatg
       Lesser Egyptian jerboa  ----cagggcgcatg
                 Prairie vole  ----caaagcgcatg
B D           Chinese hamster  ----caaagcgcatg
               Golden hamster  ----caaagcgcatg
B D                     Mouse  ----cagagcgcatg
B D                       Rat  ----cagagcgcatg
B D                Guinea pig  ----cagtgcgcatg
             Brush-tailed rat  ----cagtgcgcatg
B D                    Rabbit  ----gccggcgcatg
B D                      Pika  ----ctcggcgcatg
B D                       Pig  ----tagggcgcatg
B D                    Alpaca  ----tagagcgcatg
               Bactrian camel  ----tagggcgcatg
B D                   Dolphin  ----tagggcgcatg
                 Killer whale  ----tagggcgcatg
             Tibetan antelope  ----tagagcgcatg
B D                       Cow  ----tagagcgcatg
B D                     Sheep  ----tagagcgcatg
                Domestic goat  ----tagagcgcatg
B D                     Horse  ----tagcgcgcatg
B D          White rhinoceros  ----tacggcgcatg
B D                       Cat  ----tagggcgcatg
B D                       Dog  ----tcgcgcgcatg
B D                   Ferret   ----tagggcgcatg
B D                     Panda  ----tagggcgcatg
               Pacific walrus  ------gggcgcatg
                 Weddell seal  ----tagggcgcatg
             Black flying-fox  ----cagggcgcatg
B D                   Megabat  ----cagggcgcatg
                Big brown bat  ----gagggcgcatg
         David's myotis (bat)  ----gagggcgcata
B D                  Microbat  ----gagggcgcatg
B D                  Hedgehog  ----tggggcgcatg
              Star-nosed mole  ----tagagcgcacg
B D                  Elephant  ----tacagcgcatg
          Cape elephant shrew  ----gactgcgcagg
B D                   Manatee  ----aagagcgcatg
             Cape golden mole  ----tagagcgcatg
B D                    Tenrec  ----gagagcgcatg
                     Aardvark  ----tggagctcatg
B D                 Armadillo  ----tagggcgcatg
B D                  Platypus  cggttcgagcg----
B D                     Shrew  ===============
                  Chinchilla  ===============
B D            Naked mole-rat  ===============
                 Spotted gar  ---------------
B D             X. tropicalis  ===============
B D                    Lizard  ===============
  D    Spiny softshell turtle  ===============
  D  Chinese softshell turtle  ===============
  D            Painted turtle  ===============
  D           Green seaturtle  ===============
B D                    Turkey  ===============
          Tibetan ground jay  ===============
B D               Zebra finch  ===============
B D       Medium ground finch  ===============
  D    White-throated sparrow  ===============
  D       Collared flycatcher  ===============
  D          Peregrine falcon  ===============
  D              Saker falcon  ===============
  D               Rock pigeon  ===============
B D        American alligator  ===============
B D                   Opossum  ===============
B D           Tasmanian devil  ===============
B D                  Bushbaby  ---------------

Alignment block 6 of 414 in window, 60914106 - 60914156, 51 bps 
B D                     Human  cg-ctcc----cggcacaggc-------t---tcgat---tgtgaggaaggccggcta-gtctccgagct
B D                     Chimp  cg-ctcc----cggcacaggc-------t---tcgat---tgtgaggaaggccggcta-gtctccgagct
B D                   Gorilla  cg-ctcc----cggcacaggc-------t---tcgat---tgtgaggaaggccggcta-gtctccgagct
B D                 Orangutan  cg-ctcc----cggcacaggc-------t---tcgac---tgtgaggaaggccggcta-gtttccgagct
B D                    Gibbon  cg-ctcc----cggcacaggc-------t---tcgat---tgtgaggaaggccggcta-gtctccgagct
B D                    Rhesus  cg-ctcc----cggcgtggat-------t---tcgat---tgtgagaaaggccggcta-gtttccgggct
B D       Crab-eating macaque  cg-ctcc----cggcgtggat-------t---tcgat---tgtgagaaaggccggcta-gtttccgggct
B D                    Baboon  cg-ctcc----tggcgtgggt-------t---tcgat---tgtgagaaaggccggcta-gtttccgggct
B D              Green monkey  cg-ctcc----cggcgtgggt-------g---tcgat---tgtgagaaaggccggcta-gtttccgggct
B D                  Marmoset  cg-cttc----cggcacca-------------tcggc---tgggagggaggccggctc-gtctccgagct
B D           Squirrel monkey  cg-ctct----cggcagcagc-------t---tcggc---tgggagcgaggccggctc-gtctccgagct
B D                  Bushbaby  -----------cggctcgggc-------c---------------aggaggggccgcga-gcctccgagag
           Chinese tree shrew  cg-ctca----cagccccagc-------cggcttggg---tgtgagggtggcccgccg-gtctccgcgct
B D                  Squirrel  cg-ctca----aggcgcccgc-------t---ccggc---agcgagcgcggtgggcctcgtctccggacg
       Lesser Egyptian jerboa  cgctccg----actcggctgg-------g---cctgc---a---agggaggccggcct-ggctccgcgct
                 Prairie vole  cg-tcca----cggtgtccgc-------t---cgggc---agc-taagaggccctcca-gtcgcccagct
B D           Chinese hamster  cg-tcca----cggtgtcctc-------t---cggac---agc-aaagaggcccgcca-gtctcccagcg
               Golden hamster  cg-ccca----cggcgtactc-------t---ccagc---agc-aaaggggcacgcct-gtctcccagcg
B D                     Mouse  cg-tcca----cgatgcctg------------ccaga---aag-a------cctgcca-gtctcctccgt
B D                       Rat  cg-tcca----cggtgcttgc-------t---ccagc---agc-agccttgcctgcca-gtctctcctgg
B D                Guinea pig  tg-ccct----ccacgcccgtggtggctc---ccggc---ccc-agcg----------------------
             Brush-tailed rat  cg-ccct----ccacgcccgcggcg---c---ccagc---ccc-agcg----------------------
B D                    Rabbit  cg-ccca----cgacaccagc-------t---caggc---tgcgagggaggccggccc-gtctccaggct
B D                      Pika  cg-cccc----ccacgcccgc-------t---c----------------ggcctgctc-atctcccggcg
B D                       Pig  cg-ctgac---ctgcaccaga-------tt--gatcc---cgggagggaggctgccct-gtccccgggct
B D                    Alpaca  cg-ctgac---cggcaccggg-------ct--tgagc---ccgaagagaggccggcag-gtccccgggct
               Bactrian camel  cg-ctgac---cggcaccagg-------ct--tgggc---ccgaagggaggcaggcag-gtccccgggct
B D                   Dolphin  cg-ctgac---cgacaccagg-------tt--tgggc---tgtgagggaggtctgcgg-gtccgtgggcg
                 Killer whale  cg-ctgac---cggcaccagg-------tt--tgggc---tgtgagggaggcctgccg-gtccgtgggcg
             Tibetan antelope  cg-ctcac---cggcaccggg-------tt--taggc---cttttgggcggctcgcag-gtcc--gggcg
B D                       Cow  cg-ctgac---cggctccggac------tt--tgggc---tttttgggcggcccgcag-gtcc--gggca
B D                     Sheep  cg-ctgac---cggcaccggg-------tt--taggc---cttttgggcggctcgcag-gtcc--gggcg
                Domestic goat  cg-ctgac---cggcaccggg-------tt--taggc---cttttgggcggctcgcag-gtcc--gggcg
B D                     Horse  cg-ccca----cggcactggg-------ct--tggcc-----cgagagaggccggcag-gtcc-cgggct
B D          White rhinoceros  cg-ccca----ctgccgtggt-------ct--gaacc----gtggaggaggccggcgg-gtcctcgggct
B D                       Cat  cg-ccca----cggcacggtg-------tt--tgggc---ggggagggggaccggcag-gtccccgggct
B D                       Dog  cg-ccca----cggcacagag-------tt--tgggc--------------------g-gtctcccggct
B D                   Ferret   cg-ccca----aggcacaggg-------tt--tgggc---tgggagggggaccggttg-gtcc-cgggct
B D                     Panda  cg-ccca----cggcacaggg-------tt--tgggc---tgggagggggaccggttg-gtccttgggcg
               Pacific walrus  cg-ccca----cggctcagga-------tt--tgggc---tgggagggggactggtcg-gtccccaggct
                 Weddell seal  cg-ccca----cggcgccggg-------tt--tgggc---tgggagggggactggtcg-gtccccgggct
             Black flying-fox  cg-caca----cggcaccggg-------tt--tgggc-----ctggagggagcggccg-gcaccagggcc
B D                   Megabat  cg-caca----cggcaccggg-------tt--tgggc-----ctggagggagcggccg-gcaccagggcc
                Big brown bat  cg-caca----gcggggcggg-------c------------------gggagcgg-cg-gggcccgggcg
B D                  Microbat  cg-caca----gcgcgccgag-------c---ggggc-----ggggagggagcgg-cg-ggtcccgggcg
B D                  Hedgehog  cg-ctct----cggagtcgtc-------tc--tgggc---tccgagggaggtcgtccg------tcggta
              Star-nosed mole  cg-cgcc----cagcg----------------tgggc---cgtgcgggaggccgcctg-ggtcctgggca
B D                  Elephant  cg-cgca----gggcagcgct-------tt--aagcc---tgtgagggaggcaggctt-gtgtctaagct
          Cape elephant shrew  ct-cgta----ggac-tcgat-------tt--aa-cc---agtgaaggcaac-ggcca-ggctgtgggtt
B D                   Manatee  cg-ccta----gggcctcgcg-------tt--tagcc---tgtgaagcaggctggtcg-ctgttcggcct
             Cape golden mole  cg-caca----ggacaccgcg-------tt--taagc---agtaagagaggctagccc-gtctctggatt
B D                    Tenrec  cg-ctca----gggcacctag-------tt--tagcc---agcgagcaagacc-gcca-ggctccggccg
                     Aardvark  cg-catt----gggcaccgcc-------tt--cagcc---tgtgagggagcccggccg-gtctgcggtct
B D                 Armadillo  cg-ctca----gggcacgagg-------ct--tggga---agcgaaggaggctggcct-ggctctggggt
B D                  Platypus  cg-ctccaccgctgcgcgtgc-------g---cagacgggcgcgggaggggcggggtc-gcggttggagc
B D                     Shrew  ======================================================================
                  Chinchilla  ======================================================================
        David's myotis (bat)  ----------------------------------------------------------------------
B D            Naked mole-rat  ======================================================================
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  -
                        Chimp  -
                      Gorilla  -
                    Orangutan  -
                       Gibbon  -
                       Rhesus  -
          Crab-eating macaque  -
                       Baboon  -
                 Green monkey  -
                     Marmoset  -
              Squirrel monkey  -
                     Bushbaby  -
           Chinese tree shrew  -
                     Squirrel  -
       Lesser Egyptian jerboa  -
                 Prairie vole  -
              Chinese hamster  -
               Golden hamster  -
                        Mouse  -
                          Rat  -
                   Guinea pig  -
             Brush-tailed rat  -
                       Rabbit  -
                         Pika  -
                          Pig  -
                       Alpaca  -
               Bactrian camel  -
                      Dolphin  -
                 Killer whale  -
             Tibetan antelope  -
                          Cow  -
                        Sheep  -
                Domestic goat  -
                        Horse  -
             White rhinoceros  -
                          Cat  -
                          Dog  -
                      Ferret   -
                        Panda  -
               Pacific walrus  -
                 Weddell seal  -
             Black flying-fox  -
                      Megabat  -
                Big brown bat  -
                     Microbat  -
                     Hedgehog  -
              Star-nosed mole  -
                     Elephant  -
          Cape elephant shrew  -
                      Manatee  -
             Cape golden mole  -
                       Tenrec  -
                     Aardvark  -
                    Armadillo  -
                     Platypus  g
                        Shrew  =
                   Chinchilla  =
         David's myotis (bat)  -
               Naked mole-rat  =
                  Spotted gar  -
                X. tropicalis  =
                       Lizard  =
       Spiny softshell turtle  =
     Chinese softshell turtle  =
               Painted turtle  =
              Green seaturtle  =
                       Turkey  =
           Tibetan ground jay  =
                  Zebra finch  =
          Medium ground finch  =
       White-throated sparrow  =
          Collared flycatcher  =
             Peregrine falcon  =
                 Saker falcon  =
                  Rock pigeon  =
           American alligator  =
                      Opossum  =
              Tasmanian devil  =

Inserts between block 6 and 7 in window
B D                 Squirrel 1bp
B D                   Rabbit 1bp
B D                     Pika 1bp

Alignment block 7 of 414 in window, 60914157 - 60914159, 3 bps 
B D                     Human  ca--t
B D                     Chimp  ca--t
B D                   Gorilla  ca--t
B D                 Orangutan  ca--t
B D                    Gibbon  ca--t
B D                    Rhesus  ca--t
B D       Crab-eating macaque  ca--t
B D                    Baboon  ca--t
B D              Green monkey  ca--t
B D                  Marmoset  cc--t
B D           Squirrel monkey  cc--t
B D                  Bushbaby  ca--t
           Chinese tree shrew  aa--t
B D                  Squirrel  ct---
       Lesser Egyptian jerboa  cg---
                 Prairie vole  ca---
B D           Chinese hamster  ca---
               Golden hamster  ca---
B D                     Mouse  cg---
B D                       Rat  ct---
B D            Naked mole-rat  cgc--
B D                Guinea pig  ctc--
             Brush-tailed rat  tga--
B D                    Rabbit  at---
B D                      Pika  ct---
B D                       Pig  --cat
B D                    Alpaca  --cat
               Bactrian camel  --cat
B D                   Dolphin  --cat
                 Killer whale  --cat
             Tibetan antelope  --cgt
B D                       Cow  --cgt
B D                     Sheep  --cgt
                Domestic goat  --cgt
B D                     Horse  --cat
B D          White rhinoceros  --cct
B D                       Cat  --cct
B D                       Dog  --cat
B D                   Ferret   --cat
B D                     Panda  --cat
               Pacific walrus  --cat
                 Weddell seal  --cat
             Black flying-fox  --cat
B D                   Megabat  --cat
                Big brown bat  --cgt
B D                  Microbat  --cgt
B D                  Hedgehog  --cct
              Star-nosed mole  --cat
B D                  Elephant  --cat
          Cape elephant shrew  --caa
B D                   Manatee  --cat
             Cape golden mole  --tat
B D                    Tenrec  --cct
                     Aardvark  --cgt
B D                 Armadillo  --cct
B D                  Platypus  --cgg
B D                     Shrew  =====
                  Chinchilla  =====
        David's myotis (bat)  -----
                 Spotted gar  -----
B D             X. tropicalis  =====
B D                    Lizard  =====
  D    Spiny softshell turtle  =====
  D  Chinese softshell turtle  =====
  D            Painted turtle  =====
  D           Green seaturtle  =====
B D                    Turkey  =====
          Tibetan ground jay  =====
B D               Zebra finch  =====
B D       Medium ground finch  =====
  D    White-throated sparrow  =====
  D       Collared flycatcher  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
  D               Rock pigeon  =====
B D        American alligator  =====
B D                   Opossum  =====
B D           Tasmanian devil  =====

Inserts between block 7 and 8 in window
B D               Guinea pig 1bp

Alignment block 8 of 414 in window, 60914160 - 60914322, 163 bps 
B D                     Human  -cccgcc--ttgcgcatgcggagaaggtaaaccagcgccc--c-gagttgag---------------gc-
B D                     Chimp  -cccgcc--ttgcgcatgcggagaaggtaaaccaacgccc--c-gagttgag---------------gc-
B D                   Gorilla  -cccgcc--ttgcgcatgcggagaaggtaaaccaacgccc--c-gagttgag---------------gc-
B D                 Orangutan  -cccgcc--ttgcgcatgcggagaaggtaaaccaacgccc--c-gagttgag---------------gc-
B D                    Gibbon  -cccgcc--ttgcgcatgcggagaaggtaaaccaacgccc--c-gagttgag---------------gc-
B D                    Rhesus  -cccgcc--ttgcgcatgcggagaaggcaaaccaacgccc--g-gagttgag---------------gc-
B D       Crab-eating macaque  -cccgcc--ttgcgcatgcggagaaggcaaaccaacgccc--g-gagttgag---------------gc-
B D                    Baboon  -cccgcc--ttgcgcatgcggagaaggcaaaccaacgccc--g-gagttgag---------------gc-
B D              Green monkey  -cccgcc--ttgcgcatgcggagaaggtaaaccaacgccc--g-gagttgag---------------gc-
B D                  Marmoset  -cccgcc--ttgtgcatgcgcagacggtaaaccaacgccc--c-gcgtcgag---------------gc-
B D           Squirrel monkey  -cccgcc--tcgtgcatgcgcagacggtaaaccaacgccc--a-gcgtcgag---------------gc-
B D                  Bushbaby  -cccgcc--ttgcgcatgcgcagaccataaaccaacgccc--g-gtgttgag---------------gc-
           Chinese tree shrew  -cccgcc--ttgcgcatgcgcagatgctaaaccaacgccc--cggagttgag---------------gc-
B D                  Squirrel  -cccgcc--ctgcgcatgcgcagacgataaaccaccgccc-gg-gagttgag---------------gc-
       Lesser Egyptian jerboa  -ccccgc--ccgcgcacgcgcataccacaaaccaacgccc-gg-gtggcgag---------------gc-
                 Prairie vole  -atcg-c--ccgcgcatgcgcagactctaaaccaacaccccgg-gagttgag---------------gc-
B D           Chinese hamster  -atcgcc--ccgcgcatgcgcagagtctaaaccaacaccccgg-gagttgag---------------gc-
               Golden hamster  -ctcgcc--ccgcgcatgcgcagactctaaaccaacaccccgg-gagttgag---------------gc-
B D                     Mouse  -accgcc--ccgcgcatgcgcagactataaaccaacaccccgg-gagttgag---------------gc-
B D                       Rat  -gccgcc--ccgcgcatgcgcagactataaaccaactcccagg-gagttgag---------------gc-
B D            Naked mole-rat  -tccacc--ccgcgcacgcgcagaccgcaacccgctactc-cg-gagttgag---------------gc-
B D                Guinea pig  -cccgct--ccgcgcatgcgcaaaacgcaacccgacgcct-gg-gagttgag---------------gc-
                   Chinchilla  -cccgtc--ccgcgcatgcgcacaccgcaacccgacgccc-cg-gagttgag---------------gc-
             Brush-tailed rat  -cccgcc--ccgcgcacgcgcaggcagcaaccctacgccc-ca-gagttaag---------------gc-
B D                    Rabbit  -cccgccttttgcgcacgcgcagaccgtaaaccaacgccc-cg-gagttgag---------------gc-
B D                      Pika  -cccgcc--ttgcgcacgcgcacactgcaaaccaacgccc-cg-gacttgag---------------gc-
B D                       Pig  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-ca-ggattgag---------------gc-
B D                    Alpaca  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-ca-gtgtggag---------------gt-
               Bactrian camel  -cccgcc--ttgcgcgtgcgcagacgatacaccaacgccc-ca-gtgtggag---------------gc-
B D                   Dolphin  -cccgcc--tcgcgcgtgcgcagacgataaaccaacgccc-ca-gtattgag-gcgcggctttagtggc-
                 Killer whale  -cccgcc--tcgcgcgtgcgcagacgataaaccaacgccc-ca-ctattgag-gcgccgctttagtggc-
             Tibetan antelope  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-ca-gagttgagtgtgttgt----aaaac-
B D                       Cow  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-ca-gagttgag---------------gc-
B D                     Sheep  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-ca-gagttgagtgtgttgt----aaaac-
                Domestic goat  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-ca-gagttgagtgtgttgt----aaaac-
B D                     Horse  -cccgcc--ttgcgcgtgcgcaaacgacaaaccaacaccc-cg-gtattgag---------------gc-
B D          White rhinoceros  -ccagcc--ttgcgcgtgcgcagacgataaaccaacgccc-ca-gtattgag---------------gc-
B D                       Cat  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-cg-gagttgag---------------gc-
B D                       Dog  -cccgcc--ttgcgcgggcgcagacgctgaaccaacgacc--g-gggttaag---------------gc-
B D                   Ferret   -cccgct--ttgcgcgtgcgcagacggtaaaccaacgccc-gg-gagttgag---------------gc-
B D                     Panda  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-cg-gagttgag---------------gc-
               Pacific walrus  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-cg-gagttgat---------------gc-
                 Weddell seal  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-cg-gagttgaa---------------gc-
             Black flying-fox  -cccgcc--ttgcgcgtgcgcagacgataaaccagcgccc-cg-ggactgag---------------gc-
B D                   Megabat  -cccgcc--ttgcgcgtgcgcagacgataaaccagcgccc-cg-ggactgag---------------gc-
                Big brown bat  --ccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-cg-ggatcgag---------------gc-
B D                  Microbat  --ccgcc--ctgcgcgtgcgcagacgataaaccaacgccc-gg-ggatcgag---------------gc-
B D                  Hedgehog  -ccagcc--ttgcgcatgcgcagccgagatagcagcgccc-gg-gcgtggag---------------gc-
              Star-nosed mole  -cccgcc--ctgcgcgtgcgcatacgata-accaacgccc-cg-gagttgag---------------gc-
B D                  Elephant  -cccgcc--tggcgcgtgcgcagacaataaaccgacgccc-cg-gagttgag---------------gc-
          Cape elephant shrew  -cccgcc--ttgcgcatgcgcagaccgcaaaccaacgccc-cg-aagtagag---------------gc-
B D                   Manatee  -cccgcc--ttgcgcgtgcgcagacaataaaccaacgccc-cg-gagttgag---------------gc-
             Cape golden mole  -cccgcc--ttgcgcgtgcgcagacaataaaccaacaccc-cg-gagtcgag---------------gc-
B D                    Tenrec  -cccgcc--ttgcgcgtgcgcagacgataaaccaacgccc-cg-gagtcgag---------------gc-
                     Aardvark  -cccgcc--ttgcgcgtgcgcaggcaataaaccaacaccc-cg-gagttgag---------------gc-
B D                 Armadillo  -cccgcc--ttgcgcacgcgtaggctgtaaacctacg-cc-cg-gagttgag---------------gc-
B D                  Platypus  tcctccg--ctgcgcatgcgcagaggggcgcccacctcgg--a-aagcgaag---------------gcg
B D                     Shrew  ======================================================================
        David's myotis (bat)  ----------------------------------------------------------------------
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  gcgggtttggtggcgcg--tttcagcgaagtcgcac--gtgaag--gatagcagtggcctgagaaaggtg
                        Chimp  gcgggtttggtggcgcg--tttcagcgaagtcgcac--gtgaag--gatagcagtggcctgagaaaggtg
                      Gorilla  gcgggtttggtggcgcg--tttcagcgaagtcgcac--gtgaag--gatagcagtggcctgagaaaggtg
                    Orangutan  gcgggtttggtggcgcg--tttcagcgaagtcgcac--gtgaag--gatagcagtggcctgagaaaggtg
                       Gibbon  gcgggtttggtggcgcg--tttcagcgaagtcgcaa--gtgaag--gatagcagtggcctgagaaaggtg
                       Rhesus  gcgtttttggtggcgcg--tttcagcgaagtcgcac--gtgaag--gatagcagtggcctgagaaaggtg
          Crab-eating macaque  gcgtttttggtggcgcg--tttcagcgaagtcgcac--gtgaag--gatagcagtggcctgagaaaggtg
                       Baboon  gcgtttttggtggcgcg--tttcagcgaagtcgcac--gtgaag--gatagcagtggcctgagaaaggtg
                 Green monkey  gcgggtttggtggcgcg--tttcagcgaagtcgcac--gtgaag--gatagcagtggcctgagaaaggtg
                     Marmoset  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaag--gatagcagtggcctgagaaaggtg
              Squirrel monkey  gcgggtttggtggcgcg--ttttagtgaagtcgcac--gtgaaa--gatagcagtggcctgagaaaggtg
                     Bushbaby  gcgggtttggcggcgcg--ttttagtgaagtcgcac--gtgaag--catagcggcggctggag-ctggtg
           Chinese tree shrew  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaag--gatagcggtgaccggagtccggtg
                     Squirrel  gcggttttggtggcgcg--ttttagcaaagtcgcac--gtgaag--gatagcggtggccggagcccggtg
       Lesser Egyptian jerboa  gcgggtttggtggcgcg--atctagcgaagtggcac--gtgaag--gatcgcagtggcccgagccgggtg
                 Prairie vole  gcgggtttgctggcgcgttttttagcgaagtcgcac--gtgaag--gatagcggtggccggagcagggtg
              Chinese hamster  gcgggtttgctggcgcgtttttcagcgaagtcgcac--gtgaag--gatagcggtggctggagcagggtg
               Golden hamster  gcgggtttgctggcgcgtttttcagcgaagtcgcac--gtgaag--gatagcggtggccggagcagggtg
                        Mouse  gccggtttggtggcgcgttttctagcgaagtcccac--gtgaag--gatagcggtgaccggagcagggtg
                          Rat  gctggtttggtggcgcgttttctagcgaagtcccac--gtgaag--gatagcggtggccggagcagggtg
               Naked mole-rat  gtagatttggcggctca--ttttagcg-----------agaaag--cctaacagtagctgcagccgggtg
                   Guinea pig  gcgggtttagcggcgcg--tttctgcgaagtcgcacgtgtgtag--catagcagaggacagagtcgggtg
                   Chinchilla  gcgggtttggcggcgca--tttctgcgaagtcgcac--gtgaag--catcgcagtgaccggagcttggtg
             Brush-tailed rat  gcggctttggcggcgcc--tttcagcgaagtcgcac--gtgaag--tat-acagtggcgggagccgggta
                       Rabbit  gcggttttggtggcgcg--ttgtagcgaagtcgcac--gtgaag--ggtagcggtggccagagcccggtg
                         Pika  gcggttttggtggcgcg--tttcagccaagtcgcac--gtgaag--gaaagcggtggccggagctcggtg
                          Pig  gcgggtttagtggcgcg--ttttagtgaagtcgcac--gtgaag--gatagc-gtggccggagccgggtg
                       Alpaca  gcgggtttagtggcgcg--ttttagtgaagtcgcac--gtgaag--ggcagcgggggccgtagcccagtg
               Bactrian camel  gcgggtttagtggcgcg--ttttagtgaagtcgcac--gtgaag--ggcagcgggggccgtagcccggtg
                      Dolphin  gcggttttagtggcgcg--ttttagtgaagttgcac--gtgaat--aacagctgtggccggagcccggtg
                 Killer whale  gcggttttagtggcgcg--ttttagtgaagttgcac--gtgaag--aacagctgtggccggagcccggtg
             Tibetan antelope  gcgggtgtagtgccgcg--tttttgtaaagtcgcac--gtggag--agcagcggtggccagagcccggtg
                          Cow  gcgggtgtagtgccgcg--ttttagtgaagtcgcac--gtgaag--agcagcggtggccagagcccggtg
                        Sheep  gcgggtgtagtgccgcg--ttttagtaaagtcgcac--gtggag--agcagcggtggccagagcccggtg
                Domestic goat  gcgggtgtagtgccgcg--ttttagtaaagtcgcac--gtggag--agcagcggtggccagagcccggtg
                        Horse  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaag--ggcagcagtggccagagccaggtg
             White rhinoceros  gcgggtttggtggcgcg--ttttagcgaagttgcac--gtgaag--ggcagcagtagctggagccgggtg
                          Cat  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaag--ggcagtagtggccggagcccggtg
                          Dog  gcgggtttgttggggcg--ttttaacggattcgcac--gtaaag--ggcagtggcggtcggagcccggtg
                      Ferret   gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaag--ggcagtagtggccggagccgggtg
                        Panda  gcgggtttggtggcgcg--ttttaccgaagtcgcac--gtgaag--ggcagtagtggccggaaccgggtg
               Pacific walrus  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaag--ggtggtagtggccggagccgggtg
                 Weddell seal  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaag--ggcagtagtggccggagccgggtg
             Black flying-fox  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaac--ggcaggagtggccggagcccggtg
                      Megabat  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaac--ggcaggagtggccggagcccggtg
                Big brown bat  gcgggtttggtggcgcg---tttagcgaagtcgcac--gtgaag--ggcagtcgtggccggaggcgggtg
                     Microbat  gcgggtttggtggcgcg---tttagcggagtcgcac--gtgaag--ggcagccgtggccggaggc-ggtg
                     Hedgehog  gcgggtttggtggcact--ttttagcaaagtcgcac--gtgaag--ggcagcggtggccggaacctggtg
              Star-nosed mole  gcggatttggtggcgct--ttttagcgaagtcgcac--gtgaag--ggcagcggtggccggagtccggta
                     Elephant  gcgggtttggtggcgcg--ttttagctgagtcgcac--gtgaag--ggtagcagtgatcggagccgggtg
          Cape elephant shrew  gcgggtttgctggcgcg--tttcagcgaagtcgcac--gtgaag--gctagcggtgacccgagctcggtg
                      Manatee  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaag--ggtagcggtgatctgagcccggtg
             Cape golden mole  gcgggtttggtggcgcg--gtttagcgaagtcgcac--gtgaaaagagtagcagtgaccagagcccggtg
                       Tenrec  gcgggtttggtggcgcg--ttttagcgaagtcgcac--gtgaac--ggtagcagcgaccagagtccggtg
                     Aardvark  gcgggtttggtggcgcg--tttcagcgaagtcacac--gtgaag--gatagcggtgactggagcctggtg
                    Armadillo  gcggatttggtggcgcg--ttttagcgaagtcgcac--gtgaag--ggcagcggtggccggagtccggtg
                     Platypus  gcgggtggggaatcgcg--ttctagcgaagacccac--gtgaag--gacgcc--cggcc-----------
                        Shrew  ======================================================================
         David's myotis (bat)  ----------------------------------------------------------------------
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  ag-agcgggcc--ga---------ggtc------ggaa-t---g-tgg-----g-gcagcgcacgggaag
                        Chimp  ag-tgcgggcc--ga---------ggtc------ggaa-t---g-cgg-----g-gcagcgcacgggaag
                      Gorilla  ag-tgcgggcc--ga---------ggtc------ggaa-t---g-ccg-----g-gcagcgcacgggaag
                    Orangutan  ag-tgcgggcc--ga---------ggtc------ggaa-t---g-cgg-----g-gcagcgcacgggaag
                       Gibbon  ag-tgcgggcc--ga---------ggtc------ggaa-t---g-cgg-----g-gcagcgcacgggaag
                       Rhesus  ag-tgcgggcc--ga---------ggcc------ggaa-t---g-cgg-----g-gcagcgcacgggaag
          Crab-eating macaque  ag-tgcgggcc--ga---------ggcc------ggaa-t---g-cgg-----g-gcagcgcacgggaag
                       Baboon  ag-tgcgggcc--ga---------ggcc------ggaa-t---g-cgg-----g-gcagcgcacgggaag
                 Green monkey  ag-tgcgggcc--aa---------ggcc------ggaa-t---g-cgg-----g-gcagcgcacgggaag
                     Marmoset  ag-tgcgggcc--ga---------ggcc------ggaa-t---g-cgg-----g-atagcacgcgggaag
              Squirrel monkey  ag-tgcgggcc--ga---------ggcc------ggaa-t---g-cgg-----g-atagcacgcgggaag
                     Bushbaby  ag-tcgaggcc--ga---------gagc------gggact---g-agg-----a-gcagcacgcagcacg
           Chinese tree shrew  ag-tgcgggcc--ga---------gact------ggaa-ctagg-gag-----g-ggtgcacgcgagatg
                     Squirrel  ag-tgcgagccgaga---------gatca-----gggc-t---g-agg-----g-gtagcacgcaggacc
       Lesser Egyptian jerboa  ag-cgcgggct--ga---------gatcg-----aggc-----g-ggg-----aggcagcacgcgggaca
                 Prairie vole  ag-tgaggacc--ga---------gatct-----gggc-t---g-tgg-----acgcagcttaagggaaa
              Chinese hamster  ag-tgcggccc--ga---------gatct-----gtgg-t---t-tgg-----atgctacttatgggaca
               Golden hamster  ag-tgcgggcc--ga---------gatcc-----gttc-t---g-tgg-----atgcagctcaagggaca
                        Mouse  ag-tgagggcc--ga---------gacca-----gggc-t---g-tag-----atgcagcttaaaggaca
                          Rat  ag-tgagggcc--ga---------gaccg-----gggc-t---g-tgg-----atgcagcttaagggaca
               Naked mole-rat  ag-tgcgggct--ga---------gggc------gggc-t---g-gac-----g-gctgcatgctaggcc
                   Guinea pig  ag-tgcgggcc--ga---------gggc------gagc-t---g-ggc-----g-gccgcacacgaggtc
                   Chinchilla  ag-tgcaggcc--ga---------gggc------gggc-t---g-ggc-----g-gccgcacacgaggcc
             Brush-tailed rat  ag-tgagggcc--gaggctaggctggac------gggc-a---g-ggc-----g-gctgcacacgtggcc
                       Rabbit  ag-tccaggcc--ga---------gattg-----ggac-t---g-cgg-----gggctgcatgcgggtcc
                         Pika  ag-tccagccc--gg---------gatcg-----gggc-t---g-cgg-----ggg-tgcaggcgggacc
                          Pig  ag-tgcgagcc--ga---------gactg-----gcgc-t---cgggg-----g-gctgcacgcgagacg
                       Alpaca  ag-tgcgagcc--ga---------gacca-----ggac-t---c-gag-----g-tcagcatgcgggacg
               Bactrian camel  ag-tgcgagcc--ga---------gacca-----ggac-t---c-gag-----g-tcagcatgcgggacc
                      Dolphin  ag-tgcgaccc--ga---------gaccg-----gggc-t---c-cgg-----g-gctgtacctgggact
                 Killer whale  ag-tgcgaccc--ga---------gaccg-----gggc-t---c-cgg-----g-gctgtacccgggact
             Tibetan antelope  ag-tgcaagct--ga---------gactg-----gggc-t---c-ggg-----g-gctgcacgcgggact
                          Cow  ag-tgcaggct--ga---------gaccg-----ggac-t---c-ggg-----g-gctgcacgcgggact
                        Sheep  ag-tgcaagct--ga---------gactg-----gggc-t---c-ggg-----g-gctgcacgcgggact
                Domestic goat  ag-tgcaagct--ga---------gactg-----gggc-t---c-ggg-----g-gctgcacgcgggact
                        Horse  ag-tgccagcc--ga---------gaccg-----gggc-t---c-ggg-----g-gcggcacgcgggacg
             White rhinoceros  ag-tgcgagcc--ga---------gagcg-----gcgc-t---c-ggc-----g-gcggcacgagggacg
                          Cat  ag-tgccagtc--ga---------gaccg-----gggc-t---c-ggg-----g-acagaacgcgggacg
                          Dog  ag-cgcggatg--ga---------gac-------gggt-t---c-agg-----g-gcggaacgcggggcg
                      Ferret   ag-tgccagtg--ga---------gaccg-----gggc-t---t-agg-----g-gcagaacgtgggacg
                        Panda  ag-tgccagcg--ga---------gaccg-----gggc-t---c-agg-----g-gcagaacgcgggtcg
               Pacific walrus  ag-taccagtg--ga---------gaccg-----gggc-c---c-agg-----a-gcagaacgcgggacg
                 Weddell seal  ag-tgccagtg--ga---------gaccg-----gggc-t---c-agg-----g-gcagaacgcgggacg
             Black flying-fox  ag-tgtgagcg--ca---------gaccg-----cggc-t---c-ggg-----g-gcagacc--ggggcg
                      Megabat  ag-tgtgagcg--ca---------gaccg-----cggc-t---c-ggg-----g-gcagacc--ggggcg
                Big brown bat  ag-tgtgggcc--ga---------cgccg-----gggc-t---c-agg-----g-gccggtc--gggcca
                     Microbat  ag-tgtgagcc--ga---------aaccg-----gggc-g---c-agg-----g-gccggac--gggcca
                     Hedgehog  ag-tacgagcc-aga---------ggcc------atgc-t---g-gggaagcag-gtagcacgcggggtt
              Star-nosed mole  agttgcgagcc--ga---------ggt----------c-t---g-ggg-----t-gcatcatg-ggggtc
                     Elephant  ag-tgcgaacc--aa---------gaccg-----gggc-tg--g-gac-----a-acagcacttgcgacg
          Cape elephant shrew  ag-tgcacgac--ga---------gactg-----gagc-gga-g-ggg-----g-acagcacatgggatt
                      Manatee  ag-tgcaagcc--ga---------gaccg-----gggc-tg--g-ggt-----g-acagtacttgcgacg
             Cape golden mole  ag-tgcaagcc--aa---------gaccg-----gcgc-tg--g-ggg-----c-acagtgcgtagggcg
                       Tenrec  ag-tgcgcgcc--ga---------ggccg-----gggc-tt--g-agg-----g-acggcgcgtgggacc
                     Aardvark  ag-tgcgaccc--ga---------gactg-----gggc-tga-a-ggg-----g-gcagcacgtgggatg
                    Armadillo  ag-tgcgagcc--ga---------gaccg-----cggc-c---g-ggg-----g-gcatcactttgggcg
                     Platypus  ---cacggatc--ga---------aatcgcccactcgg-t---g-agt-----g-acaacgggggggggg
                        Shrew  ======================================================================
         David's myotis (bat)  ----------------------------------------------------------------------
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  gg-gagacagc
                        Chimp  gg-gagacagc
                      Gorilla  gg-gagacagc
                    Orangutan  gg-gagacagc
                       Gibbon  gg-gagacagc
                       Rhesus  gg-gagacagc
          Crab-eating macaque  gg-gagacagc
                       Baboon  gg-gagacagc
                 Green monkey  gg-gacacagc
                     Marmoset  gg-tcgacagc
              Squirrel monkey  gg-tcggcagc
                     Bushbaby  gg-gaggcggc
           Chinese tree shrew  gg-gaggcggc
                     Squirrel  gg-gaagcggc
       Lesser Egyptian jerboa  gggtgggcgac
                 Prairie vole  ga---------
              Chinese hamster  ga---------
               Golden hamster  ga---------
                        Mouse  ga---------
                          Rat  ga---------
               Naked mole-rat  cg-ggcgcggc
                   Guinea pig  ga-ggcgccgc
                   Chinchilla  gg-ggtgccgc
             Brush-tailed rat  gg-agtgctgc
                       Rabbit  gg-gaggcggc
                         Pika  gg-gaggcggc
                          Pig  gg-gaagcggc
                       Alpaca  gg-gaggcggc
               Bactrian camel  gg-gaggtgac
                      Dolphin  gg-gttgcggc
                 Killer whale  gg-gttgcggc
             Tibetan antelope  gg-atggcggc
                          Cow  gg-gtggcggc
                        Sheep  gg-atggcggc
                Domestic goat  gg-atggcggc
                        Horse  gg-aaggcggc
             White rhinoceros  gg-gaggcggc
                          Cat  gg-gaggcggc
                          Dog  gg-gaggcggc
                      Ferret   gg-caggcggc
                        Panda  gg-cgggcggc
               Pacific walrus  gg-caggcggc
                 Weddell seal  gg-caggcggc
             Black flying-fox  gg-gaggaggc
                      Megabat  gg-gaggaggc
                Big brown bat  gg-gaggcggc
                     Microbat  gg-gaggcggc
                     Hedgehog  gg-gaggctgc
              Star-nosed mole  gg-caggcagc
                     Elephant  gg-gaggcggc
          Cape elephant shrew  ag-gaggtggc
                      Manatee  gg-gaggcagc
             Cape golden mole  gg-aaggcagc
                       Tenrec  cg-gaggtggc
                     Aardvark  ag-gaggcagc
                    Armadillo  gg-gaggcagc
                     Platypus  ga-gggg----
                        Shrew  ===========
         David's myotis (bat)  -----------
                  Spotted gar  -----------
                X. tropicalis  ===========
                       Lizard  ===========
       Spiny softshell turtle  ===========
     Chinese softshell turtle  ===========
               Painted turtle  ===========
              Green seaturtle  ===========
                       Turkey  ===========
           Tibetan ground jay  ===========
                  Zebra finch  ===========
          Medium ground finch  ===========
       White-throated sparrow  ===========
          Collared flycatcher  ===========
             Peregrine falcon  ===========
                 Saker falcon  ===========
                  Rock pigeon  ===========
           American alligator  ===========
                      Opossum  ===========
              Tasmanian devil  ===========

Inserts between block 8 and 9 in window
B D                  Dolphin 3bp
                Killer whale 3bp

Alignment block 9 of 414 in window, 60914323 - 60914329, 7 bps 
B D                     Human  agccgct
B D                     Chimp  agccgct
B D                   Gorilla  agccgct
B D                 Orangutan  agccgct
B D                    Gibbon  agccgct
B D                    Rhesus  agccgct
B D       Crab-eating macaque  agccgct
B D                    Baboon  agcggct
B D              Green monkey  agccgct
B D                  Marmoset  agccgct
B D           Squirrel monkey  agccgct
B D                  Bushbaby  agctgct
           Chinese tree shrew  aggcgct
B D                  Squirrel  ggc-cgt
       Lesser Egyptian jerboa  agc-ttt
                 Prairie vole  ----ttt
B D           Chinese hamster  ----ttt
               Golden hamster  ----ttt
B D                     Mouse  ----ttt
B D                       Rat  ----ttt
B D            Naked mole-rat  ggc-ccc
B D                Guinea pig  ggc-tcc
                   Chinchilla  ggg-ccc
             Brush-tailed rat  ggc-ccc
B D                    Rabbit  agctgct
B D                      Pika  agcggtg
B D                       Pig  ggcagct
B D                    Alpaca  agctgct
               Bactrian camel  agccgct
B D                   Dolphin  ggccgct
                 Killer whale  ggccgct
B D                       Cow  ggccgct
B D                     Sheep  ggccgct
                Domestic goat  ggccgct
B D                     Horse  agccgct
B D          White rhinoceros  agcccct
B D                       Cat  agccgct
B D                       Dog  cgccgcc
B D                   Ferret   aaccgct
B D                     Panda  agccgct
               Pacific walrus  agccgct
                 Weddell seal  agccgcc
             Black flying-fox  agccaca
B D                   Megabat  agccaca
                Big brown bat  agccac-
         David's myotis (bat)  ----aa-
B D                  Microbat  agccac-
B D                  Hedgehog  tgccgcc
              Star-nosed mole  aaccgtt
B D                  Elephant  agccccc
          Cape elephant shrew  agccgcc
B D                   Manatee  agctgct
             Cape golden mole  cgccgtc
B D                    Tenrec  agccgcc
                     Aardvark  agtcgcc
B D                 Armadillo  cagcaat
B D                  Platypus  ggttact
B D                     Shrew  =======
            Tibetan antelope  NNNNNNN
                 Spotted gar  -------
B D             X. tropicalis  =======
B D                    Lizard  =======
  D    Spiny softshell turtle  =======
  D  Chinese softshell turtle  =======
  D            Painted turtle  =======
  D           Green seaturtle  =======
B D                    Turkey  =======
          Tibetan ground jay  =======
B D               Zebra finch  =======
B D       Medium ground finch  =======
  D    White-throated sparrow  =======
  D       Collared flycatcher  =======
  D          Peregrine falcon  =======
  D              Saker falcon  =======
  D               Rock pigeon  =======
B D        American alligator  =======
B D                   Opossum  =======
B D           Tasmanian devil  =======

Inserts between block 9 and 10 in window
B D                 Platypus 5402bp

Alignment block 10 of 414 in window, 60914330 - 60914330, 1 bps 
B D                     Human  -g
B D                     Chimp  -g
B D                   Gorilla  -g
B D                 Orangutan  -g
B D                    Gibbon  -g
B D                    Rhesus  -g
B D       Crab-eating macaque  -g
B D                    Baboon  -g
B D              Green monkey  -g
B D                  Marmoset  -g
B D           Squirrel monkey  -g
B D                  Bushbaby  -g
           Chinese tree shrew  -g
B D                  Squirrel  -g
       Lesser Egyptian jerboa  -g
                 Prairie vole  -g
B D           Chinese hamster  -g
               Golden hamster  -g
B D                     Mouse  -g
B D                       Rat  -g
B D            Naked mole-rat  -c
B D                Guinea pig  -g
                   Chinchilla  -g
             Brush-tailed rat  -g
B D                    Rabbit  -g
B D                      Pika  -g
B D                       Pig  -a
B D                    Alpaca  -g
               Bactrian camel  -g
B D                   Dolphin  -a
                 Killer whale  -a
B D                       Cow  -g
B D                     Sheep  -a
                Domestic goat  -a
B D                     Horse  -g
B D          White rhinoceros  -g
B D                       Cat  -g
B D                       Dog  -g
B D                   Ferret   -g
B D                     Panda  -g
               Pacific walrus  -g
                 Weddell seal  -g
             Black flying-fox  -g
B D                   Megabat  -g
                Big brown bat  -g
         David's myotis (bat)  -a
B D                  Microbat  -g
B D                  Hedgehog  ag
              Star-nosed mole  -g
B D                  Elephant  -a
          Cape elephant shrew  -g
B D                   Manatee  -g
             Cape golden mole  -g
B D                    Tenrec  -g
                     Aardvark  -g
B D                 Armadillo  -g
B D                     Shrew  ==
            Tibetan antelope  NN
                 Spotted gar  --
B D             X. tropicalis  ==
B D                    Lizard  ==
  D    Spiny softshell turtle  ==
  D  Chinese softshell turtle  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D                    Turkey  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
B D       Medium ground finch  ==
  D    White-throated sparrow  ==
  D       Collared flycatcher  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D               Rock pigeon  ==
B D                  Platypus  ==
B D        American alligator  ==
B D                   Opossum  ==
B D           Tasmanian devil  ==

Alignment block 11 of 414 in window, 60914331 - 60914385, 55 bps 
B D                     Human  c-aggcggcacca-gg-cggagc-cgc-gaggcc-tg-gagagtccgag-----tgggga-ggggtcc
B D                     Chimp  c-aggcggtacca-gg-cggagc-cgc-gaggcc-tg-gggagtccgag-----tgggga-ggggtcc
B D                   Gorilla  c-gggcggcacca-gg-cggagc-cgc-gaggtc-tg-gagagtccgag-----tgggga-ggggtcc
B D                 Orangutan  c-aggcggcacca-gg-cagagc-cgcggaggcc-tg-gatagtccgag-----tgggga-ggggtcc
B D                    Gibbon  c-aggcggcacca-gg-cagagc-cgc-gaggcc-tg-gagagtccgag-----tgggga-ggggtct
B D                    Rhesus  c-aggcggcacca-gg-cagagc-ggc-gaggcc-tg-gagagtccgag-----tcggga-ggggtcc
B D       Crab-eating macaque  c-aggcggcacca-gg-cagagc-ggc-gaggcc-tg-gagagtccgag-----tcggga-ggggtcc
B D                    Baboon  c-aggcggcacca-gg-cagagc-ggc-gaggcc-tg-gagagtccgag-----taggga-ggggtcc
B D              Green monkey  c-aggcggcacca-gg-cagacc-ggc-gaggcc-tg-gagagtccgag-----tcggga-ggggtcc
B D                  Marmoset  c-aggcgggacca-gg-cggagt-cgc-gaggcc-tg-gagcgtccgag-----tgggga-ggggtcc
B D           Squirrel monkey  t-aggcgggacca-gg-cggagc-cgc-gaggcc-ta-gagggtccgag-----tgagga-ggggtcc
B D                  Bushbaby  c-aggttgggccaggg-ccgagc-cgt-ggggcc-tg-gggagccgggg-----tgggga-ggggtcc
           Chinese tree shrew  c-aggcggggcca-ggttggaag-tac-gaggcc-tg-gagggtccaagtggtctgggga-ggggtct
B D                  Squirrel  c-aggcgggatccggg-cggaac-cgc-gaggcc-tg--ccagtccgag-----tgggga-ggggtcg
       Lesser Egyptian jerboa  c-aggagggaacgcgg-tggagc-cgc-gaggcc-tg--cgagcctgag-----tgggga-ggggtcg
                 Prairie vole  c-aggcggcaataagg-cggagc-cga-gaggcc-tg--tgagcccgag-----tcggga-ggggtcg
B D           Chinese hamster  caaagcggcaacaggg-cggagc-cgc-gaggcc-tg--tgagccggat-----tgggga-ggggtcg
               Golden hamster  c-aagcggcagtaggg-cggagc-cgc-gaggcc-tg--tgagcctgag-----tgggga-ggggtcg
B D                     Mouse  c-aggaggtaacaggg-cggagc-cgc-aaggccttg--cgagccctag-----tgggga-ggggtcg
B D                       Rat  c-aggaagcaacaggg-cggagc-cgc-gaggccttg--tgagcccgag-----tgggga-ggggtcg
B D            Naked mole-rat  c-gag-gggagcaggg-cggggc-ctc-gtgacc-cg--------gggg-----ggggga-gggatcg
B D                Guinea pig  a-gag-gagagcaggg-cgcagc-cgc-ccggct-cg---agaccgaag-----cgggga-gttatcc
                   Chinchilla  c-gag-gggagcaggg-cggagc-ccc-gcggcc-tc---agaccggag-----agggga-gggatcc
             Brush-tailed rat  c-gag-gggagcaggg-cggagc-cgc-gtggcc-tc--gaaaccggag-----cggggagggggtcc
B D                    Rabbit  c-aggcgtggtcacgg-ttgagc-agc-gaggcc-tga-cgagccagct-----tgggga-ggggtcc
B D                      Pika  c-ggctgctgtcacgg-tggagc-ggc-gaggcc-tgatcccgccggac-----tgggga-ggggtcg
B D                       Pig  c-aagcgggactacgg-cttagc-cgc-gaggcc-tg-gagagcactag-----tgggga-ggggtcc
B D                    Alpaca  c-aggcgggagcaggg-cggaac-cgc-gaggcc-tg-gcgagcagcag-----tgggga-gggggcc
               Bactrian camel  c-aggcgggagcaggg-cggaac-cgg-gaggcc-tg-gcgagcagcag-----tgggga-ggggtcc
B D                   Dolphin  c-aggcgggaccaggg-cggagc-cgc-gaggcc-tg-gcgagcaccag-----tagaga-gggctcc
                 Killer whale  c-aggcgggaccaggg-cggagc-cgc-gaggcc-tg-gcgagcaccag-----tagaga-gggctcc
             Tibetan antelope  c-aggtgggagcccgg-cg--gc-atc-gaggcc-tg-gagagcgcctg-----tgggga-ggggtcc
B D                       Cow  c-aggtgtgagcccgg-cg--gc-cgc-gaggcc-tg-acgaacgcctg-----tgggga-ggggtcc
B D                     Sheep  c-aggtgggggcccgg-cc--gt-ttc-tagaac-ta-cagacttacag-----tcgggg-tgggtat
                Domestic goat  c-aggggggagcccgg-cg--gc-atc-gaggcc-tg-cagagcgtctg-----tgggga-ggggtcc
B D                     Horse  c-aggcggcagcaggg-aggtgc-cgc-gaggcc-cg-gagagcacgac-----tgggga-ggggtcc
B D          White rhinoceros  c-aggccggagcaggg-agacgc-cgc-gaggcc-ct-gaaagcatgac-----tgggga-ggggtcc
B D                       Cat  c-aggtgggagcaggg-cggagt-cgc-gaggcc-tg-gcggacacggg-----tgggga-ggggtcc
B D                       Dog  c-aagtgggagcagga-cggggc-cgc-gaggcc-tg-gcgagctcgcc-----t-ggga-gggttcc
B D                   Ferret   c-aggtgggaacaagg-cgcggc-ctc-gaggcc-tg-gcgaacacacg-----tgggga-ggggtcc
B D                     Panda  c-acgtgggagcaagg-cggg-----------------------------------------------
               Pacific walrus  c-aggtgggagcgggg-tggggc-ctc-gaggcc-tg-gcgaacacgcg-----tgggga-ggggtcc
                 Weddell seal  c-aggtgggagcgggg-cggggc-ctc-gaggcc-tg-gcgaacacgcg-----t------ggggtcc
             Black flying-fox  c-aggcggggccaagg-cggagc-cgc-aaggcc-cg-gccagcacgac-----tgggga-ggggtcc
B D                   Megabat  c-aggcggggccaagg-cggagc-cgc-aaggcc-cg-gccagcacgac-----tgggga-ggggtcc
                Big brown bat  c-aggcggggccgggg-cggagc-cgc-gaggct-gg-gcgagcacgac-----tgggga-ggggtc-
         David's myotis (bat)  a-aagcgg----------------------------------gcactgc-----tgggga-ggggtc-
B D                  Microbat  c-aggcggggccgggg-cggagc-cgc-gaggct-cg-gcgagcacgac-----tgggga-ggggtc-
B D                  Hedgehog  c-aggcgaggccaagg-tggagc-cgc-ggggcc-tg-gccagcacgac-----tgggga-ggggtcg
              Star-nosed mole  c-agcctgaaccgatg-gagagc-tcg-gaggcc-tg-a-tggcacccc-----tgggga-ggggtcc
B D                  Elephant  c-gggcgggaccagtg-tggagt-cgt-gaggcc-tg-gtgaacccgag-----tgggga-ggggtcc
          Cape elephant shrew  c-gggtgggacctggg-tggagc-ttc-gaggcc-tg-gcgatcctgag-----cgggga-ggggtcg
B D                   Manatee  c-gggcgggaccaggg-cggagt-tat-gaggcc-tg-gtgatcccgag-----tgggga-ggggtcc
             Cape golden mole  c-gggcggggataggg-cggggc-cgc-aaggcc-ta-ctgagcccgag-----tgggga-ggggtcc
B D                    Tenrec  c-gggcagggccaggg-tggagc-cgc-gaggcc-tg-cagagcccgaa-----tgggga-ggggtcc
                     Aardvark  c--agcgggactaggg-cggagc-cgc-gaggcc-tg-gcgagcccgtg-----tgggga-ggggtcc
B D                 Armadillo  c-gagtaagaccaggc-cggacctttt-gaggcc-tg-gtgaggccgag-----tggggt-ggggtcc
B D                     Shrew  ====================================================================
                 Spotted gar  --------------------------------------------------------------------
B D             X. tropicalis  ====================================================================
B D                    Lizard  ====================================================================
  D    Spiny softshell turtle  ====================================================================
  D  Chinese softshell turtle  ====================================================================
  D            Painted turtle  ====================================================================
  D           Green seaturtle  ====================================================================
B D                    Turkey  ====================================================================
          Tibetan ground jay  ====================================================================
B D               Zebra finch  ====================================================================
B D       Medium ground finch  ====================================================================
  D    White-throated sparrow  ====================================================================
  D       Collared flycatcher  ====================================================================
  D          Peregrine falcon  ====================================================================
  D              Saker falcon  ====================================================================
  D               Rock pigeon  ====================================================================
B D                  Platypus  ====================================================================
B D        American alligator  ====================================================================
B D                   Opossum  ====================================================================
B D           Tasmanian devil  ====================================================================

Inserts between block 11 and 12 in window
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 2bp
B D                      Cow 2bp
B D                    Sheep 102bp
               Domestic goat 2bp
B D                    Horse 2bp
B D         White rhinoceros 2bp
B D                      Cat 2bp
B D                      Dog 2bp
B D                  Ferret  2bp
              Pacific walrus 2bp
                Weddell seal 2bp
            Black flying-fox 2bp
B D                  Megabat 2bp
B D                 Hedgehog 2bp
             Star-nosed mole 2bp

Alignment block 12 of 414 in window, 60914386 - 60914406, 21 bps 
B D                     Human  gcg-------------------------c-gcccagc-------gtgcgaaaca
B D                     Chimp  gcg-------------------------c-gcccagc-------gggcgaaaca
B D                   Gorilla  gcg-------------------------c-gcccagc-------gggc-aaaca
B D                 Orangutan  gcg-------------------------c-gcccagc-------gggcgaaaca
B D                    Gibbon  gcg-------------------------c-gcccagc-------gggcgaaaca
B D                    Rhesus  gcg-------------------------c-gcccagc-------gggcgaaaca
B D       Crab-eating macaque  gcg-------------------------c-gcccagc-------gggcgaaaca
B D                    Baboon  gcg-------------------------c-gcccagc-------gggcgaaaca
B D              Green monkey  gcg-------------------------c-gcccaga-------gggcgaaaca
B D                  Marmoset  gcg-------------------------c-gccccac-------tggcggaacg
B D           Squirrel monkey  gcg-------------------------c-gcccgga-------gggcgaaaca
B D                  Bushbaby  gaggt-----------------------c-gcgtggc-------gggcgaaaca
           Chinese tree shrew  gag-------------------------tagtttggc-------agtcggagca
B D                  Squirrel  gacgt-----------------------c-ctgcggc-------ggacgaagct
       Lesser Egyptian jerboa  gacgt-----------------------c-aagccgc-------gagctccgca
                 Prairie vole  aacgt-----------------------g-gagcgtg-------ggatttagca
B D           Chinese hamster  aacgt-----------------------g-gagcgtg-------gggctcagcc
               Golden hamster  aacgt-----------------------g-gagcttg-------gggcttagcc
B D                     Mouse  aacgt-----------------------g-gaacgtg-------gggcttaaca
B D                       Rat  aacgt-----------------------g-gagcgtg-------gggcttagca
B D            Naked mole-rat  gactt-----------------------c-cagcggc-------cgatcgtgcc
B D                Guinea pig  gacgt-----------------------c-gagcggc-------gggtcgagcc
                   Chinchilla  cacgt-----------------------c-gagcggc-------gggtcgtgcc
             Brush-tailed rat  tacgt-----------------------c-gagtggc-------gggtcctgcc
B D                    Rabbit  gacgt-----------------------c-gcgcggc-------gggccgagaa
B D                      Pika  gacgtc----------------------c-gcacggc-------gggccctgcg
B D                       Pig  -----cgt--------------------c-gctccgc-------ggg-------
B D                    Alpaca  -----cgt--------------------c-gcgcggt-------ggg-------
               Bactrian camel  -----cgt--------------------c-gcgcggt-------ggg-------
B D                   Dolphin  -----cgt--------------------c-gcgcggc-------ggg-------
                 Killer whale  -----cgt--------------------c-gcgcggc-------ggg-------
             Tibetan antelope  -----agt--------------------c-gcgcggc-------gga-------
B D                       Cow  -----agt--------------------c-gcgcggc-------ggg-------
                Domestic goat  -----agt--------------------c-gcgcggc-------gga-------
B D                     Horse  -----cgt--------------------c-gcgcggc-------ggg--aagca
B D          White rhinoceros  -----cgt--------------------c-gggcggc------gggg--aaaca
B D                       Cat  -----cgg--------------------c-ccccagc-----ggggg--aaaca
B D                       Dog  -----cgc--------------------c-ccccgggttgggggggg--ggcca
B D                   Ferret   -----cgg--------------------c-gcccggc-----ggggg--aaaca
               Pacific walrus  -----cgg--------------------c-gcccggc-----gaggg--aaaca
                 Weddell seal  -----cgg--------------------c-gcccggc----ggaggg--aaaca
             Black flying-fox  -----cgt--------------------c-gcgcggc------cggg--aagtc
B D                   Megabat  -----cgt--------------------c-gcgcggc------cggg--aagtc
                Big brown bat  -----------------------------------------------------c
         David's myotis (bat)  -----------------------------------------------------c
B D                  Microbat  -----------------------------------------------------c
B D                  Hedgehog  -----ggt--------------------a-gcgcgga-------ggt-------
              Star-nosed mole  -----cgt--------------------c-gcgcggc-------gga-------
B D                  Elephant  ---gacat--------------------c-gcgcggc-------ggggaaaaag
          Cape elephant shrew  ---gactc--------------------a-gcacagc-------gggggttagg
B D                   Manatee  ---aaagt--------------------c-gcgcggc-------gggggaaaca
             Cape golden mole  ---gacgg--------------------c-gcgcggc-------gcgggaacca
B D                    Tenrec  ---aaaggggtcctgggccgcgcgtggcc-gggcggg-------gagggggacg
                     Aardvark  ---gacgt--------------------c-gcgcggc-------g-gggaaacg
B D                 Armadillo  ---gacct--------------------c-gtgcgac-------cggggaaaca
B D                     Shrew  ======================================================
B D                     Panda  ------------------------------------------------------
B D                     Sheep  ======================================================
                 Spotted gar  ------------------------------------------------------
B D             X. tropicalis  ======================================================
B D                    Lizard  ======================================================
  D    Spiny softshell turtle  ======================================================
  D  Chinese softshell turtle  ======================================================
  D            Painted turtle  ======================================================
  D           Green seaturtle  ======================================================
B D                    Turkey  ======================================================
          Tibetan ground jay  ======================================================
B D               Zebra finch  ======================================================
B D       Medium ground finch  ======================================================
  D    White-throated sparrow  ======================================================
  D       Collared flycatcher  ======================================================
  D          Peregrine falcon  ======================================================
  D              Saker falcon  ======================================================
  D               Rock pigeon  ======================================================
B D                  Platypus  ======================================================
B D        American alligator  ======================================================
B D                   Opossum  ======================================================
B D           Tasmanian devil  ======================================================

Inserts between block 12 and 13 in window
B D                      Pig 6bp
B D                   Alpaca 7bp
              Bactrian camel 7bp
B D                  Dolphin 6bp
                Killer whale 6bp
            Tibetan antelope 9bp
B D                      Cow 7bp
               Domestic goat 9bp
B D                 Hedgehog 3bp
             Star-nosed mole 5bp

Alignment block 13 of 414 in window, 60914407 - 60914514, 108 bps 
B D                     Human  aaccgggg----acccg---ga----------tccccgttgctatgca---accgggggcgtcgtttcca
B D                     Chimp  aaccgggg----acccg---ga----------tcctcgttgctatgca---accgggggcgtcgtttcca
B D                   Gorilla  aaccgggg----acccg---ga----------tcctcgttgctatgca---accgggggcgtcgtttcca
B D                 Orangutan  aaccgggg----acccg---ga----------tcctcgttgctatgca---accgggggcgtcgtttcca
B D                    Gibbon  aacccggg----acccg---ga----------tcctcgttgctatgca---accgggggcatcgtttcca
B D                    Rhesus  aacagggg----acccg---ga----------tcctcgttgctatgca---accgggggcgtcgtttcca
B D       Crab-eating macaque  aacagggg----acccg---ga----------tcctcgttgctatgca---accgggggcgtcgtttcca
B D                    Baboon  aacagggg----acccg---ga----------tcctcgttgctatgca---accgggggcgtcgtttcca
B D              Green monkey  aacaggga----acccg---ga----------tcctcgttgctatgca---accgggggcgtcgtttcca
B D                  Marmoset  aaccgggg----acccg---ga----------acctcgttgctatgca---accgggggcgtcgtttcta
B D           Squirrel monkey  aacccggg----acccg---ga----------acctcgttgctatgca---accgggggcgtcgtttcta
B D                  Bushbaby  aactggga----actcg---ga----------ttttcgttgctatgca---accgggggcgtcgttacta
           Chinese tree shrew  aactggag----gccgg---ga----------tcctcgttgctatgca---actgggggcgtcgttgcta
B D                  Squirrel  tactgggg----acccg---ga----------tcctcgttgctatgca---accgggggcgtcgttacta
       Lesser Egyptian jerboa  ggctagag----gcccg---ga----------tccttgttgctatgca---accgggggcgtcgttacta
                 Prairie vole  agcctggg----acccg---ga----------tcctcgttgctatgca---accgggggcgttgttacta
B D           Chinese hamster  agcctgga----acccg---aa----------acctcgttgctatgca---accgggggcgttgttacta
               Golden hamster  agcctgga----acccg---aa----------tcctcgttgctatgca---accggaggcgttgttacta
B D                     Mouse  agtatggg----accca---ga----------tcctcgttgctatgca---accaggggcgttgttacta
B D                       Rat  agcctggg----accca---ga----------tcctcgttgctatgca---accaggggcgttgttacta
B D            Naked mole-rat  --cctggg----acccg---gt----------tcctcgttgctacgcg---accgggggtggcgttgcta
B D                Guinea pig  --cctggg----acccg---ga----------tccttgttgctacgca---accgggggaggtgttgcta
                   Chinchilla  --cctggg----acccg---ga----------tcctcgttgctacgca---acc-ggggcggcgttacta
             Brush-tailed rat  --cctggg----acccg---ga----------tcctcgttgctacgca---acc-ggggcggcgttacta
B D                    Rabbit  aactgggg----acccg---ga----------t-ctcgttgctacgca---accgggggcgtcgttacta
B D                      Pika  acttgggg----accc----ga----------t-ctcgttgctacgca---accgggggcgtcgtcacta
B D                       Pig  aactgggg----acccg---ga----------tccttgttgctatgca---acagggggcgtcgttacta
B D                    Alpaca  aactgggg----acccg---gc----------tccccgttgctaagca---acagggggcgtcgttacta
               Bactrian camel  aactgggg----atcct---gc----------tcaccgttgctaagca---acagggggcgtcgttacta
B D                   Dolphin  aactgggg----actcg---ga----------tcctcgttgctatgca---acagggggcgtcgttagta
                 Killer whale  aactgggg----actcg---ga----------tcctcgttgctatgca---acagggggcgtcgttagta
             Tibetan antelope  aactatag----acccg---ga----------tcctcgttgctatgca---acagggggcgtcgttacta
B D                       Cow  aacagtgg----acccg---ga----------tcctcgttgctatgca---acagggggcgtcgttacta
B D                     Sheep  aactatag----acccg---ga----------tcctcgttgctatgca---acagggggcgtcgttacta
                Domestic goat  aactatag----acccg---ga----------tcctcgttgctatgca---acagggggcgtcgttacta
B D                     Horse  aact-ggg----acccg---ga----------tcctcgttgctatgca---aca-ggggcgtcgttacta
B D          White rhinoceros  aactgggg----acccg---ga----------tcctcgttgctatgca---acagggggcgtcgttacta
B D                       Cat  aacggggg----atccg---aa----------tcctcgttgctatgca---acagggggcgtcgttacta
B D                       Dog  atgtgggg----ccc-----ga----------tcctgg-tgctatgtatgcaca-ggagcgtcg-tgcta
B D                   Ferret   aactgggg----acccg---ga----------tcctggttgctatgca---acagggagcgtcgttacta
B D                     Panda  -------------cccg---ga----------tcctggttgctatgca---acagggggcgtcgttacta
               Pacific walrus  aactgggg----acccg---ga----------tcctggttgctatgca---acagggggcgtcgttacta
                 Weddell seal  aactgggg----accag---ga----------tcctggttgctatgca---acagggggcgtcgttacta
             Black flying-fox  gactaggg----acccg---ga----------tcctcgttgctatgca---acagggggcgtcgtaacta
B D                   Megabat  gactaggg----acccg---ga----------tcctcgttgctatgca---acagggggcgtcgtaacta
                Big brown bat  gactgggg----acccg---ga----------tccttgttgctatgca---acagggggcgtcgttacta
         David's myotis (bat)  gactgagg----acccg---ga----------tccctgttgctatgca---acagggggcgtcgttacca
B D                  Microbat  gactgggg----acccg---ga----------tccttgttgctatgca---acagggggcgtcgttacca
B D                  Hedgehog  tactgtgg----ccccg---ggaccggcatcctcctcgttgctatgca---accgggggcgtcgttgcta
              Star-nosed mole  aactgggg----acccg---ga----------ttctcgttgctatgca---a-cgggggcgtcgttacta
B D                  Elephant  aactgggg----acctg---ga----------tcctcgttgctatgca---accgggggcgtcgttactg
          Cape elephant shrew  ttct-ggg----agcta---at----------gcctcgttgctatgca---accgggggcgtcgttacta
B D                   Manatee  aactggggacccacccg---ca----------ttctcgttgccatgca---accgggggcgtcgttacta
             Cape golden mole  aact-ggg----acccg---ga----------tcctcgttgctatgca---acagcgggcgtcgttacta
B D                    Tenrec  cactgggg----acccggatga----------tcctcgttgctatgca---acggggggcgctgctccta
                     Aardvark  aactgggg----acccg---ga----------ttctcgttgctatgcg---accgggggcgtcgttacta
B D                 Armadillo  aactcggg----acccg---ga----------tcctcgttgctgtgca---acccggggcgtcgttgcta
B D                     Shrew  ======================================================================
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  ggcaacccgggaggcgcacgtttccggggagaagagggtt----gc-gg--cgaggttccg---aggt
                        Chimp  ggcaatccgggaggcgcacgtttccggggagaagagggtt----gc-gg--cgaggttccg---aggt
                      Gorilla  ggcaacccgggaggcgcacgtttccggggagaagagggtt----gc-ag--cgaggttccg---aggt
                    Orangutan  ggcaacccgggaggcgcacgtttccggggagaagagggtt----gc-ag--cgaggttccg---aggt
                       Gibbon  ggcaacccgggaggcgcacgtttccggggagaagagggtt----gc-ag--cgaggttccg---aggt
                       Rhesus  ggcaacccgggaggcgcatgtttccggggagaagagggtt----gc-ag--cgaggtaccg---aggt
          Crab-eating macaque  ggcaacccgggaggcgcatgtttccggggagaagagggtt----gc-ag--caaggtaccg---aggt
                       Baboon  ggcaacccgggaggcgcatgtttccggggagaagagggtt----gc-ag--caaggtaccg---aggt
                 Green monkey  ggcaacccgggaggcgcatgtttccggggagaagagggtt----gc-ag--caaggtaccg---aggt
                     Marmoset  ggcaacccggaaggcgcacgtttccggggagaagacggtt----gc-ag--caaggttccg---agat
              Squirrel monkey  ggcaacccggcaagcgcacgtttccggggagaagagggtt----gc-ag--cagggttctg---aggt
                     Bushbaby  ggtaacccgaaaggcccgcgtttccggagagaggagggtt----ag-ag--cggtgctgct---aggt
           Chinese tree shrew  cgtaacccgggaggcgcgtgtttccggggagaagtgggtt----cg-ag--cgcagctgca---aggt
                     Squirrel  ggtaacctcggaggcgtgcatttcccaggagcagagagtt----cg-ag--cactgctctg---aggt
       Lesser Egyptian jerboa  ggtaaccccggaggtgcgtgtttcccgggagaagagggtt----cg-ag--agctgctcc----cggt
                 Prairie vole  agtaacccaggaggagagtgttt----ggaaaagcgggtt----cg-ag--cactg--------aggt
              Chinese hamster  ggtaacccagaagtaaagtgtttcccggagaaagtgggtt----cg-ag--cgctg--------aggt
               Golden hamster  ggtaacccaggagaagagggtttccgggagaaagtgggtt----cg-ag--agctg--------aggt
                        Mouse  ggtaaccctggaggagagtgtttcccgggatgagtgggtt----cg-ag--cgctg--------aggt
                          Rat  ggtaacccaggaagagagtgtttcccgggataagtgggtt----cg-ag--cgctg--------aggt
               Naked mole-rat  ggtaac--gggaggcgcggggttccc-cacgtggaggttg----ca-cg--tgctg------------
                   Guinea pig  agtaac--aggaggcgcgggtttctctaatgcagcgggtg----ag-cg--tgatg------------
                   Chinchilla  ggtaac--gggaggcgcgggtttctcgtttgcagagggtg----ca-cg--tgctg------------
             Brush-tailed rat  agtaac--tggaggcgcgggtttctcagatgctgaggatg----ca-cg--tgctg------------
                       Rabbit  ggtaacccgggaagcgcgcgtttccgaggagtagagggtt----cg-gc--cgcggctcgg---aggt
                         Pika  agtaaccagggaggcgcgcgtttccggggagaagagggtt----cc-ac-gagcgtcccgg---aggt
                          Pig  ggtaacaagagaggcacgcctttccggggagaagagcgtt----ccgac--cgctgcttggagaaggt
                       Alpaca  ggtaacacggaaggcacgcgtttccggggagaagagcgtt----ccgat--agctgctccg---aggt
               Bactrian camel  ggtaacacgggaggcacgcgtttccggggagaagagcgtt----ccgat--agctgctccg---aggt
                      Dolphin  ggtaacaggggaggcgcgtgtttccggggagaaga--gtt----cccag--cgctgccccg---aggt
                 Killer whale  ggtaacaggggaggcgcgtgtttccggggagaaga--gtt----cccag--cgctgcgccg---aggt
             Tibetan antelope  agtaacaggagaggcgcgcgtttccggggagaaga--ctt----cgcgg--tgctgctcca---aggt
                          Cow  agtaacaggggaggtgcgcgtttccggggagaaga--gtt----cgcgg--tgctgctcca---aggt
                        Sheep  agtaacaggagaggcgcgcgtttccggggagaaga--ctt----cgagg--tgctgctcca---aggt
                Domestic goat  agtaacaggagaggcgcgcgtttccggggagaaga--ctt----cgcag--tgctgctcca---aggt
                        Horse  ggtaaccggagaggcacgcgtttccgcggagcgtagggtt----cggag--cgctgctccg---aggt
             White rhinoceros  ggtaacaggggaggcatgcgtttccgcggagaggaaggtt----ccgag--cgctgctccg---aggt
                          Cat  ggtaacaggggaggcacgcgtttccggggtgaagagggtt----cggag--cgctgctcag---aggt
                          Dog  -gtgacagga---gcacgcgttccc-ggatgaa-agggct----ccgag--cgctgctcag---aggt
                      Ferret   ggtaacaggg-agggacgcgtatccggggtgaagagggtt----cggcgctctctgctcag---aggt
                        Panda  ggtaacaggg-aggcacgcgtttccggggtgaagagggtt----cggac--cgctgctgag---aggt
               Pacific walrus  ggtaacaggg-atgcacgcgtttccggggtgaagagggtt----cggag--ctctgctcag---aggt
                 Weddell seal  ggtaacaggg-aggcacgcgtttccggggtgaagagggtt----cggag--ctctgctcag---aggt
             Black flying-fox  ggcaacggg--aggcacgcttttcctgggagcagaggaat----cccag--cgctgcttcg----att
                      Megabat  ggcaacggg--aggcacgcttttcctgggagcagaggaat----cccag--cgctgcttcg----att
                Big brown bat  ggcaacggg--aggcacgcgtttcctgggagccgagggtt----ccgag---gcggctagg---aaat
         David's myotis (bat)  ggcaacggg--aggcacgcgtttcctgggaaccgagggtt----ccgag---gctgctagg---aaat
                     Microbat  ggcaacggg--aagcacgcgtttcctgggagccgagggtt----ccgag---gctgctagg---aaat
                     Hedgehog  ggtaac--gg-aggcgagcgcttccggggagaagcgagtt----cggag--cgcggcgctg---gggt
              Star-nosed mole  ggtaacgggg-aggcgagcgtttcccgggagtagaggatt----cgtag--cgctgctgcg---atgt
                     Elephant  ggtaacacgggaggcgtgcgtttcccgggagaagaaagtt----ccg-g--cgctgcgccg---aagt
          Cape elephant shrew  ggtaacaccagcggcacgcatttccggggagaagcgtgtt----tggag--cgcctcgcag---aggt
                      Manatee  ggtaacagcgtgggcacgtgtttcccgggagaagagggtt---cccgag--cgctgctccg---aggt
             Cape golden mole  gataaggcgggaggcgagcgtttccggggagaagagtgtt----acgag--tgctgctccc---aggt
                       Tenrec  ggtaacgcgggaggcgcgcgtttccggggagaagcgggtt----ccgag--cgccgctccg---aggt
                     Aardvark  ggtaacgcgagaggcacgtttttccggggagaaggggattgattgcaag--cgctgctccg---aagt
                    Armadillo  tgcaacccggggcgcgcgcgtttccggggagaagaggatt----ccgag--cgctgctccc---aggt
                        Shrew  ====================================================================
                  Spotted gar  --------------------------------------------------------------------
                X. tropicalis  ====================================================================
                       Lizard  ====================================================================
       Spiny softshell turtle  ====================================================================
     Chinese softshell turtle  ====================================================================
               Painted turtle  ====================================================================
              Green seaturtle  ====================================================================
                       Turkey  ====================================================================
           Tibetan ground jay  ====================================================================
                  Zebra finch  ====================================================================
          Medium ground finch  ====================================================================
       White-throated sparrow  ====================================================================
          Collared flycatcher  ====================================================================
             Peregrine falcon  ====================================================================
                 Saker falcon  ====================================================================
                  Rock pigeon  ====================================================================
                     Platypus  ====================================================================
           American alligator  ====================================================================
                      Opossum  ====================================================================
              Tasmanian devil  ====================================================================

Alignment block 14 of 414 in window, 60914515 - 60914675, 161 bps 
B D                     Human  c---cggc-----agag-gt---ggag-c---g--gctcccg---------------------ggcg-t-
B D                     Chimp  c---cggc-----agag-gt---ggag-c---g--gctcccg---------------------ggca-t-
B D                   Gorilla  c---cggc-----agag-gt---ggag-c---g--gctcccg---------------------ggcg-t-
B D                 Orangutan  c---cggc-----ggag-gt---ggag-c---g--gctcccg---------------------ggcg-t-
B D                    Gibbon  c---ccgc-----ggag-gt---ggag-c---g--gctcccg---------------------ggca-t-
B D                    Rhesus  c---cggc-----ggag-gt---ggag-c---g--gctcccg---------------------ggcg-t-
B D       Crab-eating macaque  c---cggc-----ggag-gt---ggag-c---g--gctcccg---------------------ggcg-t-
B D                    Baboon  c---cggc-----ggag-gt---ggag-c---g--gctcccg---------------------ggcg-t-
B D              Green monkey  c---cggc-----ggag-gt---ggag-c---g--gctcccg---------------------ggcg-t-
B D                  Marmoset  g---cg--------------------g-c---g--gctccct---------------------ggcg-t-
B D           Squirrel monkey  c---cggc-----gcgg-gt---ggag-c---g--gctccct---------------------ggcg-t-
B D                  Bushbaby  c---catc-----tggg-gc---ggag-c---g--gctgcca---------------------gacg---
           Chinese tree shrew  c---cagt-----ggag-gc---agag-c---a--gcagcca---------------------gacg---
B D                  Squirrel  c---cggt-----ggca-gc---agtg-c---g--gctactg---------------------gact-g-
       Lesser Egyptian jerboa  c---cggt-----ggag-gc---ggag-c---a--gctaccg---------------------gact-g-
                 Prairie vole  c---cagt-----agag------ggag-c---a--gctacta---------------------gact-t-
B D           Chinese hamster  c---cagt-----agag------ggag-c---a--gctgcca---------------------gatt-t-
               Golden hamster  c---cagt-----agag------ggag-c---a--gctgcca---------------------gatt-t-
B D                     Mouse  c---tagccctccggag------ggag-c---a--gctgcca---------------------gatt-tg
B D                       Rat  c---cagtcctccggag------ggag-c---a--gctgcta---------------------gatt-tg
B D            Naked mole-rat  c---cgga-----g--------------------------------------------------tct-g-
B D                Guinea pig  c---cgga-----gatg------cgcg-g---g--gcttccc---------------------ggct-g-
                   Chinchilla  c---ggga-----gatg------tgcc-g---g--gtgcctc---------------------ggct-g-
             Brush-tailed rat  a---ggga-----gagg------tgcc-g---g--gcgctt-----------------------------
B D                    Rabbit  c---cagt-----gcag-gc---agag-c---a--gctgccg---------------------ggctgg-
B D                      Pika  c---cagt-----ggag-gc---ggag-c---g--gctttca---------------------ggct-g-
B D                       Pig  c---cggc-----cgat-gc---tagg-t---g--gctgtca---------------------ggct-a-
B D                    Alpaca  c---cggg-----cgag-ac---ccgg-c---g--gctgtca---------------------ggct-c-
               Bactrian camel  c---cggc-----cgag-ac---ctgg-c---g--gctgtca---------------------ggct-g-
B D                   Dolphin  c---cggt-----caag-gc---cggg-t---g--gttgtca---------------------ggct-g-
                 Killer whale  c---cggt-----caag-gc---cggg-t---g--gttgtca---------------------ggct-g-
             Tibetan antelope  c---ctgt-----cgag-ga---cacg-c---g--gctgtca---------------------ggtt-t-
B D                       Cow  c---cggt-----cgag-ga---cacg-c---g--gctgtca---------------------ggtt-t-
B D                     Sheep  c---ctgt-----cgag-ga---cacg-c---g--gctgtca---------------------ggtt-t-
                Domestic goat  c---ctgt-----cgag-ga---cacg-c---g--gctgtca---------------------ggtt-t-
B D                     Horse  c---cggc-----cgagcgg---ggag-c---g--gtggcca---------------------ggct-g-
B D          White rhinoceros  t---cggc-----cgagcgg---ggag-c---g--gttgcca---------------------gact-g-
B D                       Cat  c---cggc-----aggg-gc---gggg-c---g--gctgtca---------------------ggct-g-
B D                       Dog  ccggcggc-----cgag-gc---cggg-c---a--gctgcca---------------------ggct-g-
B D                   Ferret   c---cggc-----tgag-gc---gggg-c---t--gctgcca---------------------ggct-g-
B D                     Panda  c---cggc-----tgag-gc---gggg-c---t--gctgcta---------------------ggct-g-
               Pacific walrus  c---cggc-----tgag-gc---gggg-c---g--gctgcca---------------------ggct-g-
                 Weddell seal  t---cgac-----tgag-gc---gggg-c---g--gctgccc---------------------ggct-g-
             Black flying-fox  c---ccgc-----ccag-gc---gcgg-cggcg--gcgacca---------------------ggct-g-
B D                   Megabat  c---ccgc-----cgcg-gc---gcgg-cggcg--gcgacca---------------------ggct-g-
                Big brown bat  c---cggc-----cgag-gc---gagg-c------gcggtcc---------------------ggcg-g-
         David's myotis (bat)  c---cggc-----cgag-gc---gcgg-c------ggggtca---------------------ggct-g-
B D                  Microbat  c---cggc-----cgag-gc---gcgg-c------gcggtca---------------------ggct-g-
B D                  Hedgehog  g---cggc-----cgcg-gc---ggggtt---g--actgccagcatgcaaggggcggaggggggagt-g-
              Star-nosed mole  c---cggc-----cggg-ac---ccga-c---g--actgcca---------------------gact-g-
          Cape elephant shrew  c---tggc-----gtag-gctggacgg-g---gcagccgccc---------------------ggct-g-
B D                   Manatee  c---tggt-----ggag-gc---actg-a---g--gctgcct---------------------ggct-g-
             Cape golden mole  ----ccgc-----ggag-gc---gcgg-c---t--gccgcct---------------------gacc-t-
B D                    Tenrec  ----ccgc-----ggag------------------gctgccc---------------------gaca-g-
                     Aardvark  c---cttc-----ggag-ga---gcgg-c---g--tcttcct---------------------agctgg-
B D                 Armadillo  c---ccgc-----ggtg-gc---gggg-c---g--gctgcca---------------------ttag-a-
B D                     Shrew  ======================================================================
B D                  Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  g-gggaccaggcc----------a------gcgccaa-g-cccga-gcccccga--------accccg--
                        Chimp  g-gggaccaggcc----------a------gcgccaa-g-cccga-gcccccga--------accccg--
                      Gorilla  g-gggaccaggcc----------a------gcgccaa-g-cccga-gcccccga--------accccg--
                    Orangutan  g-gggaccaggcc----------a------gcgccaa-g-cccga-gcccccga--------gcccgg--
                       Gibbon  g-gggaccaggcc----------a------gcgccaa-g-cccga-gtccccga--------gccccg--
                       Rhesus  g-gggaccaggct----------a------gcgccaa-a-cccga--ctcccga--------gtcccg--
          Crab-eating macaque  g-gggaccaggct----------a------gcgccaa-a-cccga--ctcccga--------gtcccg--
                       Baboon  g-gggaccaggct----------a------gcgccaa-a-cccga--cccccga--------gtcccg--
                 Green monkey  g-gggaccaggct----------a------gcgccaa-a-cccga--cccccga--------gtcccg--
                     Marmoset  g-gggaccaggcc----------a------gcgccaa-g-cccga-gcccccga--------accccg--
              Squirrel monkey  g-gggaccaggcc----------a------gcgccaa-g-ctcga-gcccccga--------gccccg--
                     Bushbaby  --------aggcc----------a------gtg----------------cccga--------cccctg--
           Chinese tree shrew  g-ggtacgaagcc----------a------actttgt-g-cctcacacgccagt--------ccctcg--
                     Squirrel  g-gcggcgcagcc----------a------gtgctga-g-ctcga-caccccga--------ccctca--
       Lesser Egyptian jerboa  g-gggatgagagc----------g------acgctga-g-ccccg-gtactcga--------cccccg--
                 Prairie vole  g-gggatgaggcc----------a------gtgctga-g-ccgta-cacctc----------ccctaa--
              Chinese hamster  g-ggggtgaagtc----------a------gtgctga-g-ctgta-----------------ccctag--
               Golden hamster  a-ggaatgaagtc----------a------gtgctga-g-ccata-----------------ccctag--
                        Mouse  g-gggatgaggcc----------a------gtgccga-a-ctgca-cacctc----------ccccag--
                          Rat  g-gggatgaggcc----------a------gtgctga-g-ctgca-cacct-------------------
               Naked mole-rat  c-ggggcgcgggc----------cgggcaggcgctga-a-ccccg-acc-ccgc--------acctag--
                   Guinea pig  c-agggcgcggcc--------------------ctga-a-cccca-acctacac--------cttcga--
                   Chinchilla  c-ggggcgcggcc----------c-tgccagcgctga-a-ccccg-acctccgc--------gcccga--
             Brush-tailed rat  t-ggggcgctgcc----------c-tccatgcactga-a-acccg-acctccgc--------gccgga--
                       Rabbit  g-gcgaggaggtc----------g------gcggtga-a-cctga-gcgtctgcgg------ccgctg--
                         Pika  g-gcgacgaggcc----------g------tcggtga-c-cctcg-gcgcctgcgg------cccctg--
                          Pig  g-aggtcgaggct----------a------gagttga-g-cccct-cg--------------ccccctac
                       Alpaca  g-gggacgaggct----------a------gtgctga-g-cccct-cg--------------cccccgac
               Bactrian camel  g-gggacgaggct----------a------gtgctga-g-cccct-ca--------------cccctgac
                      Dolphin  g-gggacgaggcc----------a------gcgctga-g-cccct-cg--------------cccccgac
                 Killer whale  g-gggacgaggcc----------a------gcgctga-g-cccct-cg--------------cccccgac
             Tibetan antelope  gcgggacgaggcc----------a------gcgctga-g-cccct-cg--------------accccgac
                          Cow  gcgggaccaggcc----------a------gcgctga-g-cccct-cg--------------accccaac
                        Sheep  gcgggacgaggcc----------a------gcgctga-g-cccct-cg--------------accccgac
                Domestic goat  gcgggacgaggcc----------a------gcgctga-g-cccct-cg--------------accccgac
                        Horse  g-gcggcgaggtt----------a------gcgctga-g-ccccc-ag--------------cccccgac
             White rhinoceros  g-ggggcgagatt----------a------gcgctga-g-cccct-ag--------------tccctgcc
                          Cat  g-ggtaggaggct----------a------gcgctga-g-ccggt-cg--------------cccccg--
                          Dog  g-ggtacggagct----------g------gcgctga-g-ccccg-ag--------------cttctg--
                      Ferret   g-ggtaggaggct----------a------gcgctga-g-cccct-cg--------------atccca--
                        Panda  g-ggtaggaggct----------a------gcgctga-g-cccct-cg--------------accccg--
               Pacific walrus  g-ggtacgaggct----------a------gcgctga-gccccct-cg--------------accccg--
                 Weddell seal  g-ggtacgaggct----------a------gcgctga-g-cccct-cg--------------accccg--
             Black flying-fox  g-ggaatgaggcc----------a------gcgctta-g-cacct-cgtccccgac------ccccca--
                      Megabat  g-gggatgaggcc----------a------gcgctta-g-cacct-cgtccccgac------ccccca--
                Big brown bat  g-gggacaaggcc----------a------gcgctga-g-cgcct-cgccccagacccccggcccccg--
         David's myotis (bat)  g-gggacgaggcc----------g------gcgctga-g-cgcct-cgccccaga-------cccccg--
                     Microbat  g-ggaacgaggcc---agcgctga------gcgctga-g-cgcct-cgccccaga-------cccccg--
                     Hedgehog  g-gg---gaggcc----------a------ggctgca-c-ttcac-cgc-------------cctcca--
              Star-nosed mole  g-gg---gactccgcctgcgcgga------gccttcg-c-ccctc-cga-------------cctccg--
          Cape elephant shrew  g-aggacccggcg----------g------cctctga-g-cccct-tgca-gga--------cctccc--
                      Manatee  g-ggcacgaggct----------a------gctccga-g-cccct-tgcaccga--------tctctg--
             Cape golden mole  g-ggaacgaagcc----------a------gcgcgaa---cccct-tgcgccga--------cctctg--
                       Tenrec  g-gggacgcggcc----------a------gctccagcc-ccccc-tgcgccga--------act-----
                     Aardvark  g-gggacgaggct----------a------gctctga-g-cccct-tgcaccga--------cctccg--
                    Armadillo  c-gaggcgaggct----------a------gcgccct-g-ctcct-cgc--cgc--------cgactg--
                        Shrew  ======================================================================
                     Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  -----acc-cac-ggcccagcctcct-gcagcct---------------c----ggctcg----------
                        Chimp  -----gcc-cac-ggcccagcctcct-gcagcct---------------c----ggctcg----------
                      Gorilla  -----acc-cac-ggcccagcctcct-gcagcct---------------c----ggctcg----------
                    Orangutan  -----acc-cac-ggcccagcctccc-gcagcct---------------c----ggctcg----------
                       Gibbon  -----acc-cat-ggcccagcctcct-gcagcct---------------c----ggctcg----------
                       Rhesus  -----acc-cac-agcccagcctcct-gcagcct---------------c----ggctcg----------
          Crab-eating macaque  -----acc-cac-agcccagcctcct-gcagcct---------------c----ggctcg----------
                       Baboon  -----acc-cac-ggcccagcctcct-gcagcct---------------c----ggctcg----------
                 Green monkey  -----acc-cac-ggcccagcctcct-gcagcct---------------c----ggctcg----------
                     Marmoset  -----acc-cac-cgcccagcctcct-gcagcct---------------c----ggctcg----------
              Squirrel monkey  -----acc-cac-cgcccagcctcct-gcagcct---------------c----ggctcg----------
                     Bushbaby  -----ccc-cac-agcccatcctcct-gtagcct---------------c----ggtttg----------
           Chinese tree shrew  -----tcc-cat-gacccagcatcct-gcagcct---------------c----agttcg----------
                     Squirrel  -----ctc-cat-ggcccggcctccc-gcggcct---------------t----ggttcg----------
       Lesser Egyptian jerboa  -----ccc-tgt-ggcccagcttcct-gcgacct---------------t----ggttcg----------
                 Prairie vole  -----ccc-cat-gatcccgcctcct-gccatcc---------------c----agttgg----------
              Chinese hamster  -----ccc-cat-ggtccagcctctt-accatcc---------------c----agttgg----------
               Golden hamster  -----ccc-cat-gatccagcctcct-gccaccc---------------c----agttgg----------
                        Mouse  -----ccc-cat-ggtccagcctcct-gccgcct---------------c----agttgg----------
                          Rat  -----ccc-cat-ggtccagcctcct-gccacct---------------c----agttgg----------
               Naked mole-rat  -----ccc-tcc-gacccaac-------------------------------------------------
                   Guinea pig  -----ccctcgc-ggccttgcctctc-gccccgc---------------g----gagttg----------
                   Chinchilla  -----ccctccc-ggccccacctcgc-gccccgc---------------g----gggtcg----------
             Brush-tailed rat  -----acc-ccc-agccctgcctcgc-tccccgc---------------g----gggttg----------
                       Rabbit  -----ccc-cac-ggccgagcccccc-gcggctt---------------t----ggttcg----------
                         Pika  -----ccc-cac-ggcccaacctcctggcagccc---------------tgcaggtcccg----------
                          Pig  tccc-gct-cac-ggtccagcctacc-gcagcct---------------c----ggtcgg----------
                       Alpaca  tctt-gcc-tat-ggcctagcatccc-acggcct---------------c----gctccg----------
               Bactrian camel  tctt-gcc-tac-ggcctagcatccc-acggcct---------------c----gctccg----------
                      Dolphin  tccc-gcc-cac-ggcccagcctccc-gcggccc---------------c----gctccg----------
                 Killer whale  tccc-gcc-cac-ggcccagcctccc-gcggccc---------------c----gctccg----------
             Tibetan antelope  tcct-ggc-tac-gactcgacttccc-gcggctt---------------c----tctccg----------
                          Cow  tccc-gcc-tac-gactcggcctccc-gcggctt---------------c----gctccg----------
                        Sheep  tcct-ggc-tac-gactcgacttccc-gcggctt---------------c----gctccg----------
                Domestic goat  tcct-ggc-tac-gactcgacttccc-gcggctt---------------c----gctccg----------
                        Horse  cccctccc-cac-ggccca-----------gcct---------------c----gccctg----------
             White rhinoceros  tcctgccc-cgc-ggcccagtctccc-gtggcct---------------t----gctctg----------
                          Cat  -----ccc-cac-ggcccagcttccc-gcggcct---------------c----gctttgagccccttgg
                          Dog  -----ccc-ctc-ggcccagctcccc-gtggcct---------------c----gctctg----------
                      Ferret   -----ccc-cat-ggcccagcttccc-ccggcccaacttcccaccgccat----gctttgagcccctcgg
                        Panda  -----ccc-caa-ggcctagcttccc-gcggcct---------------t----gctttgggtccctcgg
               Pacific walrus  -----cct-cac-ggcccagcttccc-gcggcct---------------t----gctttgagcccctcgg
                 Weddell seal  -----cct-cac-ggcccagcttccc-gcggcct---------------c----gctttgagcacctcgg
             Black flying-fox  -----ccc-cac-gacccagcctcct-gcggctt---------------c----gctcct----------
                      Megabat  -----ccc-cac-gacccagcctcct-gcggcat---------------c----gctcct----------
                Big brown bat  -----ccc-ccc-ggcccagccccct-gcggcct---------------c----gctccg----------
         David's myotis (bat)  -----ccc-gcc-ggcccagcctcct-gcggccc---------------g----gctccg----------
                     Microbat  -----ccc-gcc-ggcccagcctcct-gcggccc---------------c----gctccg----------
                     Hedgehog  -----ctt-cga-cgttcagcccttt-gggcca------------------------ccg----------
              Star-nosed mole  -----ccc-cag-cacccactctccc-gcgccgt---------------c----cctccc----------
          Cape elephant shrew  -----tcc-ggc-gatccagccctgc-atggcct---------------c----gggcca----------
                      Manatee  -----ccc-cgc-gacccagccttgc-gcggcct---------------c----cgtctg----------
             Cape golden mole  ------cc-cgc-ggcccagcttcgc-gcggcct---------------c----tggtgc----------
                       Tenrec  -------c-cgc-ggcccg---------------------------------------------------
                     Aardvark  -----ccc-cgcgggcccggcttcgc-gcagcct---------------c----ggcccg----------
                    Armadillo  -----ccc-ggc-ggtccggcctccc-gcggcct---------------c----gatccg----------
                        Shrew  ======================================================================
                     Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  ---------a--------gccct--tc-----------gg----gggg-------ccccaaactc--atg
                        Chimp  ---------a--------gccct--tc-----------gg----gggg-------ccccaaactc--atg
                      Gorilla  ---------a--------gccct--tc-----------gc----gggg-------ccccaaactc--atg
                    Orangutan  ---------a--------gccct--tc-----------gg----gggg-------ccccgaactc--atg
                       Gibbon  ---------a--------gccct--tc-----------gg----gggg-------ccccgaactc--atg
                       Rhesus  ---------a--------gcccc--tc-----------gg----gggg-------ctcccaactc--atg
          Crab-eating macaque  ---------a--------gcccc--tc-----------gg----gggg-------ctcccaactc--atg
                       Baboon  ---------a--------gcccc--tc-----------gg----gggg-------ctcccaactc--atg
                 Green monkey  ---------a--------gcccc--tc-----------gg----gggg-------cccccaactc--atg
                     Marmoset  ---------a--------gcccc--tt-----------gg----gggg-------tcccgaactc--ttg
              Squirrel monkey  ---------a--------gcccc--tc-----------gg----gggggggtggctcccaaactc--ttg
                     Bushbaby  ---------actggtttccttcc--tc-----------ga----ggta-------ccccgaactt--gtg
           Chinese tree shrew  ---------a--------gcccc--tt-----------gg----ggta-------ccctgaagtc--atg
                     Squirrel  ---------g--------gcccc--ta-----------ag----ggtg-------ccctgagctc--ctg
       Lesser Egyptian jerboa  ---------c--------ccccctccc-----------cg----ggta-------ccccgggcttagacg
                 Prairie vole  ---------a--------gcacccctc-----------tg----ggta-------ccccgacctc--aca
              Chinese hamster  ---------a--------gcccccgtc-----------tg----ggta-------cccagatctc--atg
               Golden hamster  ---------a--------gcccctctc-----------tg----ggca-------cccagatctc--act
                        Mouse  ---------a--------gcccccctc-----------ag----ggta-------tcctgacctc--atg
                          Rat  ---------a--------gccccgctc-----------tg----ggta-------ccctgacctc--atg
               Naked mole-rat  ----------------------------------------------------------------------
                   Guinea pig  ---------c--------gctta--ac-----------cg----ggtc-------ct---agctc--gtg
                   Chinchilla  ---------c--------gctta--cc-----------cg----ggcc-------cc---agctc--atg
             Brush-tailed rat  ---------c--------gctta--cc-----------cc----ggtc-------cc---agccc--gtg
                       Rabbit  ---------a--------gcccc--tc-----------gg----ggta-------ccccagactc--gcg
                         Pika  ---------c--------gtccc--ccacccacccccggg----gata-------ccccaaagtc--tcg
                          Pig  ---------a--------acctt--tt-----------gg----ggta-------cctcgaacct--ccc
                       Alpaca  ---------a--------gccct--tt-----------gg----gata-------ctcccaaccc--ccg
               Bactrian camel  ---------a--------gccct--tt-----------gg----gata-------ctcccaaccc--ccg
                      Dolphin  ---------a--------gccct--tt-----------gg----ggta-------ccccgaaccc--ctg
                 Killer whale  ---------a--------gccct--tt-----------gg----gata-------ccccgaaccc--ctg
             Tibetan antelope  ---------a--------gccct--tt-----------gg----ggta-------tcccgaaccc--ctg
                          Cow  ---------a--------gccgt--tt----------ggg----ggta-------ccccgaaccc--ctg
                        Sheep  ---------a--------accct--tt----------ggg----ggta-------tcccgaaccc--ctg
                Domestic goat  ---------a--------accct--tt----------ggg----ggta-------tcccgaaccc--ctg
                        Horse  ---------a--------gccct--tt-----------gg----ggga-------ccccgaaccc--atg
             White rhinoceros  ---------a--------gccct--tt-----------gg----ggta-------ccccgaacct--atg
                          Cat  ggtatcccga--------gcccc--tt-----------gg----ggta-------cctcgaaccc--ctg
                          Dog  ---------a--------gcctc--ca-----------ga----ggta-------ccccgagccc--ccg
                      Ferret   ggtaccccta--------gcccc--tt----------ggg----ggta-------ccccgagccc--atg
                        Panda  ggtaccgcga--------gcccc--tt-----------gg----ggta-------ccccgagccc--atg
               Pacific walrus  ggtaccccga--------gcccc--tt-----------gg----ggta-------tcccgagccc--atg
                 Weddell seal  ggtaccctga--------gcccc--tt-----------gg----gata-------tcccgaaccc--atg
             Black flying-fox  ---------a--------gccct--tt-----------gg----ggta-------ccccgaaccc--atg
                      Megabat  ---------a--------gccct--tt-----------gg----ggta-------ccccgaaccc--atg
                Big brown bat  ---------a--------gccct--tt-----------gg----ggta-------ccctgaaccc--atg
         David's myotis (bat)  ---------a--------gacct--ct-----------gg----ggta-------ccccgaaccc--atg
                     Microbat  ---------a--------gccct--tt-----------gg----ggta-------cctcgaaccc--atg
                     Hedgehog  ---------a--------gccct--ct-----------gg----gg-g-------tcccgaaccc--cgg
              Star-nosed mole  ---------a--------gcctt--tt-----------gg----gg-g-------tatcctagcc--cag
          Cape elephant shrew  ---------a--------gcccc--tc-----------gg----ggta-------ccccgtgccc--gtg
                      Manatee  ---------a--------gcccc--tc-----------gg----ggta-------ccctggg-cc--atg
             Cape golden mole  ---------a--------gcccc--tc-----------ga----cgta-------ccccgagccc--ccg
                       Tenrec  ---------a--------gcccc--tc-----------g------ggg-------ccccgcatcc--c--
                     Aardvark  ---------a--------acccc--tc-----------gg----ggta-------ctccgggccc--atg
                    Armadillo  ---------a--------gcccc--tc-----------ggggtcggta-------cccggagccc--ctg
                        Shrew  ======================================================================
                     Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  ggtcgcgccacgttcct-tg----cc---ag---cgacgctac
                        Chimp  ggtcgcgccacgttcct-tg----cc---ag---cgacgctac
                      Gorilla  ggtcgcgccacgtttct-tg----cc---ag---cgacgctac
                    Orangutan  ggtcgcgctaggttcct-tg----cc---ag---cgacgctac
                       Gibbon  ggtcgcgccacgttcct-tg----cc---ag---cgacgctgc
                       Rhesus  ggtcgcgccacgtccct-tg----cc---ag---cgacgccac
          Crab-eating macaque  ggtcgcgccacgtccct-tg----cc---ag---cgacgccac
                       Baboon  ggtcgcgccacgtccct-tg----cc---ag---cgacgccac
                 Green monkey  ggtcgcgccacgtccct-tg----cc---ag---cgacgccac
                     Marmoset  ggtcgcgccttatttct-tg----cc---ag---cgacgccac
              Squirrel monkey  ggtcgcgcctcgtctct-tg----cc---ag---cgacgccac
                     Bushbaby  ggtcgcagcacctctct-tg----cc---aa---cgacaccat
           Chinese tree shrew  ggccgcaccacgtctct-tg----cc---aa---cgacgccac
                     Squirrel  ggccacgtcacatcc---------ct---tgcccccacgccac
       Lesser Egyptian jerboa  ggc---gccacatcc-----ctggcc---gg---cgacgccac
                 Prairie vole  ggc---------------------ct---tg---cgaggccac
              Chinese hamster  ggc---------------------ct---tg---cgacgccac
               Golden hamster  ggc---------------------ct---tg---cgacgccac
                        Mouse  ggc---------------------ct---cg---cgacgccac
                          Rat  ggc---------------------ctcgccg---cgacgccac
               Naked mole-rat  ----------tgtcc----gcccgcc---ct---c-ccgctag
                   Guinea pig  ggccgcccagtgtcccc-tgcccgtt---tt---cgacactgc
                   Chinchilla  ggccgccccgtgtccct-catccgcc---cg---cgacgctgc
             Brush-tailed rat  ggtcgcccagtggccct-cgcctgcc---cg---cagcgcagc
                       Rabbit  ggccgcgccacgtccct-ggccagc----ga---cgacgccac
                         Pika  ggccgcgccacgtccct-ggccagc----gg---cgatgccag
                          Pig  ggccgctccgcgtccct-tc----cc---gg---cgacgccac
                       Alpaca  ggccgcagcgcgtccct-tg----cc---gg---cgacgccac
               Bactrian camel  ggccgcagcgcgtccct-tg----cc---gg---cgacgccac
                      Dolphin  ggccgcgccgcatccct-tg----cc---gg---tgacgccac
                 Killer whale  ggccgcgccacatccct-tg----cc---gg---tgacgccac
             Tibetan antelope  ggcctcgcggcgtccct-tg----cc---gg---cgacgtcac
                          Cow  ggccgcgccgcgtccct-tg----cc---gg---cgacgtcac
                        Sheep  ggccgcgcggcgtccct-tg----cc---gg---cgacgtcac
                Domestic goat  ggccgcgcggcgtccct-tg----cc---gg---cgacgtcac
                        Horse  ggccgcgccgtgtccct-tg----ca---ag---cgacgccac
             White rhinoceros  ggctacgccgtgtccct-tt----cc---ag---cgacgccac
                          Cat  ggccgcgccgcgtccct-tg----cc---ag---cgacgccac
                          Dog  ggccgcgccgcgcccct-cg----cc---ag---cgacgccac
                      Ferret   ggccgcgccgcgtccct-tg----cc---ag---cgacaccac
                        Panda  ggcctagctgcgtccct-tg----cc---ag---cgacgccac
               Pacific walrus  ggccgcgccgcatccct-tg----cc---ag---cgacgccac
                 Weddell seal  ggccgcgcctcgtccct-tg----cc---ag---cgacgccac
             Black flying-fox  ggccgctccagatccct-tg----cc---ag---ggacgccac
                      Megabat  ggccgctccagatccct-tg----cc---ag---ggacgccac
                Big brown bat  ggccgtgccgggtccct-tg----cc---ag---agacgccac
         David's myotis (bat)  ggccgtgccgggtccct-cg----cc---ag---agacgccac
                     Microbat  ggccgtgccggatccct-cg----cc---ag---agacgccac
                     Hedgehog  gatctggacgcatcccc-tg----cc---gg---ccacgccac
              Star-nosed mole  ggcctagaggcatccccttg----cc---ag---cgacaccac
          Cape elephant shrew  gtccgcgccttggcctt-tg----cc---ag---cgacgccac
                      Manatee  gtccgcgccgcgtccct-tg----cc---cg---caacgccac
             Cape golden mole  gctcgcgtctcgtccc--tt----tc---ag---cgacgccac
                       Tenrec  ggccgcaccgcgcccc--tg----cc---cg---cgccgccac
                     Aardvark  gtccgcggcgagtccct-tg----cc---ag---cgacgccac
                    Armadillo  agctgcgccgcttccca-tg----cc---aa---ggacgccac
                        Shrew  ===========================================
                     Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Spotted gar  -------------------------------------------
                X. tropicalis  ===========================================
                       Lizard  ===========================================
       Spiny softshell turtle  ===========================================
     Chinese softshell turtle  ===========================================
               Painted turtle  ===========================================
              Green seaturtle  ===========================================
                       Turkey  ===========================================
           Tibetan ground jay  ===========================================
                  Zebra finch  ===========================================
          Medium ground finch  ===========================================
       White-throated sparrow  ===========================================
          Collared flycatcher  ===========================================
             Peregrine falcon  ===========================================
                 Saker falcon  ===========================================
                  Rock pigeon  ===========================================
                     Platypus  ===========================================
           American alligator  ===========================================
                      Opossum  ===========================================
              Tasmanian devil  ===========================================

Inserts between block 14 and 15 in window
                    Aardvark 1bp

Alignment block 15 of 414 in window, 60914676 - 60914816, 141 bps 
B D                     Human  ccctcag-cgctt----ggc-aggggac-g-------c-gccgttcgaaatagcaca----tgccactga
B D                     Chimp  ccctcag-cgctt----ggc-aggggac-g-------c-gccgttcgaaatagcaca----tgccactga
B D                   Gorilla  ccctcag-cgctt----ggc-aggggac-g-------c-gccgttcgaaatagcaca----tgccactga
B D                 Orangutan  ccctcag-cgctt----ggc-aggggac-t-------c-gccgttcgaaatagcaca----tgccactga
B D                    Gibbon  tcctcag-cgctt----ggc-aggggac-g-------c-gccgttcgaaatagcaca----tgccactga
B D                    Rhesus  ccctcag-cgctt----ggc-aggggac-g-------c-gtcgttcgaaatagcaca----tgccactga
B D       Crab-eating macaque  ccctcag-cgctt----ggc-aggggac-g-------c-gccgttcgaaatagcaca----tgccactga
B D                    Baboon  ccctcag-cgctt----ggc-aggggac-g-------c-gccgttcgaaatagcaca----tgccactga
B D              Green monkey  ccctcag-cactt----ggc-aggggac-g-------c-gccgttcgaaatagcaca----tgccactga
B D                  Marmoset  cccacag-cgctt----ggc-aggggac-g-------c-gacgttcgaaatagcaca----tgccactga
B D           Squirrel monkey  cccgcag-cgctt----ggc-aggggac-g-------c-gacgttcgaaatagcaca----tgccactga
B D                  Bushbaby  cctacag-ttctt----ggc-aggggac-g-------c-actgttcgaaatagcaca----tgccactga
           Chinese tree shrew  cttgcag-cgctt----ggc-agggaacag-------t-gctgttcgaaatagcaca----tgccactga
B D                  Squirrel  cgagaag-cactt----ggcaaggggac-g-------c-gctgttcgaaatagcaca----tgctactga
       Lesser Egyptian jerboa  ggcgcag-cgctt----ggc-aggagat-g-------c-gcggttcgaaatagcaca----tgccgctaa
                 Prairie vole  tatgaag-cgctt----ggc-agggcat-g-------t-gctgttcgaaatagcaca----tgccactga
B D           Chinese hamster  tatgaag-cgctt----ggc-agggcat-g-------t-gttgttcgaaatagcaca----tgccactga
               Golden hamster  tatgaag-cgctt----ggc-agggcat-g-------t-gttgttcgaaatagcaca----tgccactga
B D                     Mouse  tatggag-tgctt----ggc-aggggat-g-------t-gctgttcgaaatagcaca----tgccactga
B D                       Rat  aatggag-tgttt----ggc-aggggat-g-------c-gctgttcgaaatagcaca----tgccactgc
B D            Naked mole-rat  --------cgctg----ggc--gggact-----------gctgtccgaaagagcacc----tgcc-----
B D                Guinea pig  --------cgctt----ggc-aaggaca-----------gctgtccgaaatagcatt----tgccaccga
                   Chinchilla  --------cgctt----ggc-agagact-----------gctgtccgaaatagcaca----tgccgctga
             Brush-tailed rat  --------cgctt----ggc-agggact-----------gctgtctgaaatagcaca----tgccactga
B D                    Rabbit  cctgcag-cgctt----ggc-aggggac-g-------c-gctgttggaaatagcaca----tgcgactga
B D                      Pika  cctgcag-ccctt----ggc-tggggac-g-------c-aatgttggaaatagcact----cgcgactga
B D                       Pig  ccggca--ggctt----ggc-agggaac-a-------c-actgttcgaaatagcacatgcatgccactga
B D                    Alpaca  aaagcag-ggctt----ggc-aggggac-a-------c-gctgttcgaaatagcacatacatgccactga
               Bactrian camel  aaagcag-ggctt----ggc-aggggac-a-------c-gctgttcgaaatagcacatacatgccactga
B D                   Dolphin  ccagca--agctt----ggc-aggggac-a-------c-gcggttcgaaatagcacatgcacgccactga
                 Killer whale  ccagca--agctt----ggc-aggggac-a-------c-gcggttcgaaatagcacatgcacgccactga
             Tibetan antelope  ccagca--gcctt----ggc-aggggac-a-------c-gctgttcgaaatagcacaagcgtgccactga
B D                       Cow  tcagca--gcctt----ggc-aagggac-a-------c-gctgttcgaaatagcacaagcatgccactga
B D                     Sheep  ccagca--gcctt----ggc-aggggac-a-------c-gctgttcgaaatagcacaagcgtgccactga
                Domestic goat  ccagca--gcctt----ggc-aggggac-a-------c-gctgttcgaaatagcacaagcgtgccactga
B D                     Horse  ccagcag-ggctt----ggc-aggggac-gcgctgttc-gctgttcgaaatagcaca----tgccactga
B D          White rhinoceros  ccagcag-ggctt----ggc-aggggac-a-------c-gctgttcgaaatagcaca----tgccactga
B D                       Cat  ccagcag-ggctt----ggc-aggggac-t-------t-gctgttcgaaatagcaca----tgcgactga
B D                       Dog  ccagcag-agctt----ggc-aggggac-t-------t-gctgttcgaaatagcaca----tgccactga
B D                   Ferret   ccagcag-ggctt----ggc-aggggac-t-------t-gctgttcgaaatagcaca----tgctactga
B D                     Panda  ccagacc-ggctt----ggc-aggggac-t-------t-gctgttcgaaatagcaca----tgccactga
               Pacific walrus  ccagcaa-ggctt----ggc-aggggac-t-------t-gctgtttgaaatagcaca----tgccactga
                 Weddell seal  ccagcaa-agctt----ggc-aggggac-t-------t-gctgttcgaaatagcaca----tgccattga
             Black flying-fox  ccagcaa-ggctt----ggc-aggggac-g-------c-gctgttcgaaatagcgca----taccactga
B D                   Megabat  ccagcag-ggctt----ggc-aggggac-g-------c-gctgttcgaaatagcgca----taccactga
                Big brown bat  ccagcaagggctt----ggc-aggggac-a-------c-gctgttggaaatagcaca----tggcgctga
         David's myotis (bat)  ccagcaatggctt----ggc-aggggac-a-------c-gctgttcgaaatagcaca----tgccactga
B D                  Microbat  ccagcaagggctt----ggc-aggggac-a-------c-gctgttcgaaatagcaca----tgccactga
B D                  Hedgehog  cctgcag-gactt----ggc--agggac-g-------c-gcggttcgaaatagctca----agccgctga
              Star-nosed mole  ccagcag-ggttt----ggc-tggggac-t-------c-ggtgttcgaaatagcaca----tgccactga
B D                  Elephant  cccgcgg-ggctt----ggc-aggggac-a-------c-tctgttcgaaatagcaca----tgccactga
          Cape elephant shrew  ccagcag-aggtt----gtc-aggggac-a-------cggttgttcgaaatagcaca----tgctattga
B D                   Manatee  ccagcag-ggttt----ggc-aggggac-g-------c-gctgttcgaaatagcgca----tgccactga
             Cape golden mole  ccagcag-agttt----ggc-aggggac-g-------c-actattggaaatagcaca----tgccactga
B D                    Tenrec  ccagcag-ggcttggcaggc-aggggac-g-------c-actgttgaaaatagcaca----tgccactga
                     Aardvark  ccagcag-tgctt----ggc-aggggac-g-------c-gctgttcgaaatagcaca----tgccactgc
B D                 Armadillo  cccgcga-ggctt----gcc-aggggac-g-------c-gcagttcgaaatagcaca----tgccactga
B D                     Shrew  ======================================================================
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  caccctgtc-----t-ccgggaggctg----cgccccggttagggcgcg----gagc---ggcagggaa-
                        Chimp  caccctgtc-----t-ccgggaggctg----cgccctggttagggcgcg----gagc---ggcagggaa-
                      Gorilla  caccctgtc-----t-ccgggaggctg----cgccctggttagggcgcg----gagc---ggcagggaa-
                    Orangutan  caccctgtc-----t-ccgggaggctg----cgccctgattagggcgcg----gagc---ggca-ggaa-
                       Gibbon  caccctgtc-----t-ccgggaggctg----cgccctggttagggcgcg----gagc---ggcagggaa-
                       Rhesus  caccctgtc-----t-ccgggaggctg----ggccctggggagagcgcg----gagc---ggccgggaa-
          Crab-eating macaque  caccctgtc-----t-ccgggaggctg----ggccctggggagagcgcg----gagc---ggccgggaa-
                       Baboon  caccctgtc-----t-ccgggaggctg----ggccctggggagagcgcg----gagc---ggccgggaa-
                 Green monkey  caccctgtc-----t-ccgggaggctg----ggccctggggagagcgcg----gagc---agccgggaa-
                     Marmoset  cacc--gtc-----t-ccgggaggttg----ggcgctgggaagggcgcg----gagc---ggccgggaa-
              Squirrel monkey  caccctgtg-----t-ccgggaggttg----ggcgctaggaagggcgcg----gagc---ggccgggaa-
                     Bushbaby  caccctgtc-----t-ccgggaggctg----agccctggg-agggcgcg----gcgc---ggctgggaa-
           Chinese tree shrew  caccctgtc-----t-ccgggaggctg----ggccctgagcagggcgcg----gcgc---tgctgggaa-
                     Squirrel  caccctgtc-----t-ccctgaggctg----ggccctggggagggcgcg----gcgc---ggccgggaa-
       Lesser Egyptian jerboa  c--tctgtc-----g-ctcgcagcccg----gatcctcgggagggcacg----gcaa---aag-------
                 Prairie vole  caccctgtc-----g-tcgggagtct-----ggccttgggaagggagcg----gc---------------
              Chinese hamster  caacctgtc-----g-tcgggagtctg----ggccttgggaagggagcg----gcaa---ggct------
               Golden hamster  caacctgtc-----g-tcgggagtctg----ggccttgggaagggagcg----gcag---gact------
                        Mouse  c--cctatt-----g-cctggagtctg----ggccttgggaagggagcg----gcaa---ggctgcaca-
                          Rat  c--cctgtc-----g-cctggagtctg----ggccttgggaagggagcg----gcag---ggctgca---
               Naked mole-rat  ----------------------------------------------------------------------
                   Guinea pig  caccccgcc--------ccggagcttg----gcccaatggaggg---cg----gcag---agctgc----
                   Chinchilla  cactccgcc--------ccggagcctg----gccctgtggag----------------------------
             Brush-tailed rat  caccccgcc--------ccggagcccg----gcccttcggagga---cg----gcag---ggctgc----
                       Rabbit  caccctgtc-----t-cggggaggccgcggcgcgcctgggaagc--------------------------
                         Pika  taccctgtc-----t-ggaggaggcctcgacgcgccaggggag---------------------------
                          Pig  caccctgtc-----t-tggggaggctg----ggccctggggagggcgcc----gcgc---gcctgggaa-
                       Alpaca  caccctgtc-----t-cagagagactg----ggtcctggagagggcgcg----gtac---gcctgggaa-
               Bactrian camel  caccctgtc-----t-cagagagactg----ggtcctggagagggcgcg----gtgc---gcctgggaa-
                      Dolphin  caccctgtc-----t-cggggaggctg----gatcctggggaaggcgtc----gtgc---gcctgggag-
                 Killer whale  caccctgtc-----t-cggggaggctg----ggtcctggggaaggcgtc----gtgc---gcctgggag-
             Tibetan antelope  caccctggc-----t-cggggaggccg----ggccctggggaaggcgcc----gtgc---gcatgggaa-
                          Cow  caccctgtc-----t-cgggaaggccg----ggccctggggaaagcgcc----gtgc---gcatgggaa-
                        Sheep  caccctggc-----t-cggggaggccg----ggccctgggaaaggcgcc----gtgc---gcatgggaa-
                Domestic goat  caccctggc-----t-cggggaggccg----ggccctgggaaaggcgcc----gtgc---gcatgggaa-
                        Horse  caccgtttc-----t-cagggaggctg----ggcccgggggagggcgcg----gcga---gtctgggag-
             White rhinoceros  caccctgtc-----t-cagggaggctg----ggccctggggagagcccg----gcgc---ggctgggaa-
                          Cat  caccctgtc-----tggggggaggctg----ggccctgggga-----------------------ggaa-
                          Dog  caccctgtc-----t-gcgggaggctg----ggccct-ggga-----------------------ggaa-
                      Ferret   caccctgtc-----t-gtgggaggctg----ggccctgggga-----------------------ggaa-
                        Panda  caccctgcc-----t-gggggaggctg----agccctgggga-----------------------ggaa-
               Pacific walrus  caccctgtc-----t-gggggaggctg----ggccctgggga-----------------------ggaa-
                 Weddell seal  caccctgtc-----t-gggggaggctg----ggccctgggga-----------------------ggaa-
             Black flying-fox  cacccggtc-----t-tgccgaggctg----ggccctcgggagggcgcc----gtgc---agctgggac-
                      Megabat  caccctgtc-----t-tgccgaggctg----ggccctcgggagggcgcc----gtct---agctgggac-
                Big brown bat  caccctgtc-----t-ggggtaggctg----ggccctggggagggctca----gttc---g---------
         David's myotis (bat)  caccctgtc-----t--gggtaggctg----ggccctggggagggctcg----gttc---ggctgggaa-
                     Microbat  caccctgtc-----t--gggtaggctg----ggccctggggagggctcg----gttc---ggctgggaa-
                     Hedgehog  caccccaccccgagt-cgcgggggctg----ggccccgggga-ggcgct----gcga---gcccggggga
              Star-nosed mole  cactcagtc-----t-ccgggaggctg----agccctggggagggcgcc----tcgcgctgccc------
                     Elephant  caccctgtc-----t-cgaggaggctg----ggccctggggagggcgcg----gcgc---ggctgggag-
          Cape elephant shrew  caccctgtc-----t-cgaggaggctg----cgccctggagagggtgcggcgcgcgc---gcctgggag-
                      Manatee  caccgtgtt-----t-cgaggaggctg----ggccctggggagggcgcg----gcgt---ggctgggag-
             Cape golden mole  caccctgtc-----t-ggaggaggctg----ggcgctggggagg---------gcgc---ggctgggtg-
                       Tenrec  caccctgtc-----t-ggaggaggctg----ggccctgggcggg-cgcc----gcgc---ggccccatg-
                     Aardvark  caccctgcc-----t-cgagtaggccg----ggctctagggagg---------gcgc---ggccaggag-
                    Armadillo  caccctgcc-----g-cg-ggaggctg----cgccctggggagggcacg----gcgc---ggctgggaa-
                        Shrew  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  ----g-------ctgccc-----ctttgcc-gtc-----------gccctg-ccccc--------a--aa
                        Chimp  ----g-------ctgccc-----ctttgcc-gtc-----------gccctg-ccccc--------a--aa
                      Gorilla  ----g-------ctgccc-----ctttgcc-gtc-----------gccctg-ccccc--------a--aa
                    Orangutan  ----g-------ctgccc-----ctttgca-gtc-----------gccctg--cccc--------a--aa
                       Gibbon  ----g-------ctgccc-----ctttgcc-gtc-----------gccctg-ccccc--------a--aa
                       Rhesus  ----g-------ctgccc-----ctttgcc-gtc-----------gccctg-ccccc--------a--aa
          Crab-eating macaque  ----g-------ctgccc-----ctttgcc-gtc-----------gccctg-ccccc--------a--aa
                       Baboon  ----g-------ctgccc-----ctttgcc-gtc-----------gccctg-ccccc--------a--aa
                 Green monkey  ----g-------ctgccc-----ctttgcc-gtc-----------accctg-ccccc--------a--aa
                     Marmoset  ----g-------ctgccc-----ctttgct-gtc-----------gccctg-ccccc--------a--aa
              Squirrel monkey  ----g-------ctgccc-----ctttgct-gtc-----------gccctg-ccccc--------a--aa
                     Bushbaby  ----g-------ctgccc-----ctttgcc-ttt-----------gccctgcccccc--------a--ag
           Chinese tree shrew  ----a-------ctgccc-----c-ttgct-gtc-----------accctg--cccc--------a--aa
                     Squirrel  ----g-------ctgccc-----ctttgtc-gtt-----------gccctg-cctcc--------a--aa
       Lesser Egyptian jerboa  ------------ctgccc-----ctttgcg-gtc-----------accctg-ccccc--------a--aa
                 Prairie vole  ------------gctccc-----ttttgca-ggc-----------accctg-ccccccccccccaa--ta
              Chinese hamster  ------------gcccct-----ctttgca-gtc-----------acccta-ccccca-------a--aa
               Golden hamster  ------------gccccc-----ctttgca-gtt-----------accctg-cccccc-------a--aa
                        Mouse  ----cccccccccccccc-----ctttgca-aac-----------accctg-ccccac-------a--aa
                          Rat  ------------ccccgc-----ctttgca-aac-----------accctg-ccccac-------a--aa
               Naked mole-rat  --------------------------cggc-gcc-----------ggcctg-cc----------------
                   Guinea pig  ------------ctcag---------ctcc-gtc-----------acccag-cccc---------g--ag
                   Chinchilla  --------------------------cgcc-gtc-----------acccgg-cccc---------g--gg
             Brush-tailed rat  ------------ctgggt-----gcccgct-gcc-----------tccc-g-tccc---------g--ga
                       Rabbit  ------------tgcccc-----ctttgcc-gcc-----------gccctg-ccccc--------a--ga
                         Pika  ------------------------------------------------ctg-ccccc--------a--ag
                          Pig  ----c-------ctgccc-----ctttgcccgtc-----------gccctg-ccccc--------a--aa
                       Alpaca  ----g-------ctgccc-----ctttgcctgtc-----------gccctg-ccccc--------a--aa
               Bactrian camel  ----g-------ctgccc-----ctttgcctgtc-----------gccctg-ccccc--------a--aa
                      Dolphin  ----g-------ctgccg-----ctttgcccgtc-----------gcccgg-ccccc--------a--aa
                 Killer whale  ----c-------ctgccc-----ctttgcccgtc-----------gcccgg-ccccc--------a--aa
             Tibetan antelope  ----g-------ctgccc-----ctttgctcgtc-----------gccctg-ccccc--------a--aa
                          Cow  ----g-------ctgccc-----ctttgctcgtc-----------gccctg-ccccc--------a--aa
                        Sheep  ----g-------ctgccc-----ctttgctcgtc-----------gccctg-ccccc--------a--aa
                Domestic goat  ----g-------ctgccc-----ctttgctcgtc-----------gccctg-ccccc--------a--aa
                        Horse  ----g-------ctgccc-----ctttgcccgtc-----------gccctg-ccccc--------a--aa
             White rhinoceros  ----g-------ctgccc-----ctttgcccgtc-----------gccctg-ccccc--------a--aa
                          Cat  ----g-------ctgccc-----ctttgcccgtc-----------gccctg-ccccc--------a--aa
                          Dog  ----g-------ctgccc-----ctttgcccgtg-----------gccctg-ccccc--------a--ag
                      Ferret   ----g-------ctgccc-----ctttgcccgcc-----------gccctg-ccccc--------atgaa
                        Panda  ----g-------ctgccc-----ctttgcgcgtg-----------gccctg-ccccc--------a--aa
               Pacific walrus  ----g-------ctgccc-----ctttgcccgtc-----------gccctg-ccccc--------a--aa
                 Weddell seal  ----g-------ctgccc-----ctttgcccgtc-----------gccctg-ccccc--------a--aa
             Black flying-fox  ----g-------cttccc-----ctttgcctgtc-----------g---------cc--------a--aa
                      Megabat  ----g-------cttccc-----ctttgcctgtc-----------g---------cc--------a--aa
                Big brown bat  ---------------------------gcctgtc-----------gccctg-ccccc--------a--aa
         David's myotis (bat)  ----g-------ctgccc-----ctttgcctgtc-----------gccctg-ccccc--------a--aa
                     Microbat  ----g-------ctgccc-----ctttgcctgtc-----------gccctg-ccccc--------a--aa
                     Hedgehog  tgggg-------tggctc-----ctccgcctgcc-----------gccctg-acccc--------c--aa
              Star-nosed mole  ----t-------ttgccc-----cttcgcccccccctcccccgtagccctg--cccc--------c--aa
                     Elephant  ----g-------ctgccc-----cttcgcccgtc-----------gccctg-ccccc--------a--aa
          Cape elephant shrew  ----g-------ctgccc-----cttcgcctggc-----------gctctg-ccccc--------a--aa
                      Manatee  ----g-------ctgccc-----cttcacccatc-----------gccctg-ccccc--------a--aa
             Cape golden mole  ----g-------ctgccc-----tttcgcc-gac-----------gcccag-ccccc--------a--aa
                       Tenrec  ----g-------ctgccccttcgcttcgcc-gcc-----------gccctg-ccccc--------a--aa
                     Aardvark  ----g-------ctgccc-----cttcagccgtc-----------gcccag-ccccc--------a--aa
                    Armadillo  ----g-------ctgcct-----ctttgcctttt-----------gccctg-ccccc--------a--aa
                        Shrew  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  cagttgc
                        Chimp  cagttgc
                      Gorilla  cagttgc
                    Orangutan  cagttgc
                       Gibbon  cagttgc
                       Rhesus  cagttgc
          Crab-eating macaque  cagttgc
                       Baboon  cagttgc
                 Green monkey  cagttgc
                     Marmoset  cagttgc
              Squirrel monkey  cagttgc
                     Bushbaby  cagttgg
           Chinese tree shrew  cagttgc
                     Squirrel  cagttgc
       Lesser Egyptian jerboa  cagttgc
                 Prairie vole  cagttgc
              Chinese hamster  cagttgc
               Golden hamster  cagttgc
                        Mouse  cagttgc
                          Rat  cagttgc
               Naked mole-rat  ------c
                   Guinea pig  cagttgc
                   Chinchilla  cagttgc
             Brush-tailed rat  cagttgc
                       Rabbit  cagttgc
                         Pika  cagttga
                          Pig  cagttgc
                       Alpaca  cagttgc
               Bactrian camel  cagttgc
                      Dolphin  cagttgc
                 Killer whale  cagttgc
             Tibetan antelope  cagttgc
                          Cow  cagttgc
                        Sheep  cagttgc
                Domestic goat  cagttgc
                        Horse  cagttgc
             White rhinoceros  cagttgc
                          Cat  cagttgc
                          Dog  cagttgc
                      Ferret   cagttgc
                        Panda  cagttgc
               Pacific walrus  cagttgc
                 Weddell seal  cagttgc
             Black flying-fox  cagttgc
                      Megabat  cagttgc
                Big brown bat  cagaggc
         David's myotis (bat)  cagttgc
                     Microbat  cagttgc
                     Hedgehog  cagttgc
              Star-nosed mole  cagttgc
                     Elephant  cagttgc
          Cape elephant shrew  cagttgc
                      Manatee  cagttgc
             Cape golden mole  cagttgc
                       Tenrec  cagttgt
                     Aardvark  cagttgc
                    Armadillo  cagttgc
                        Shrew  =======
                  Spotted gar  -------
                X. tropicalis  =======
                       Lizard  =======
       Spiny softshell turtle  =======
     Chinese softshell turtle  =======
               Painted turtle  =======
              Green seaturtle  =======
                       Turkey  =======
           Tibetan ground jay  =======
                  Zebra finch  =======
          Medium ground finch  =======
       White-throated sparrow  =======
          Collared flycatcher  =======
             Peregrine falcon  =======
                 Saker falcon  =======
                  Rock pigeon  =======
                     Platypus  =======
           American alligator  =======
                      Opossum  =======
              Tasmanian devil  =======

Inserts between block 15 and 16 in window
B D                Orangutan 335bp
B D                 Bushbaby 1bp

Alignment block 16 of 414 in window, 60914817 - 60914986, 170 bps 
B D                     Human  t----gg---gcagcagctgtca-ggg-gtttagt--gg-gagctgccccc-aacctgccaggg--cgct
B D                     Chimp  t----gg---gcagcagctgtca-ggg-gtttagt--gg-gagctgccccc-aacctgccaggg--cgct
B D                   Gorilla  t----gg---gcagcagctgtca-ggg-gtttagt--gg-gagctgccccc-aacctgtcaggg--cgct
B D                 Orangutan  t----gg---gcagcagctgtca--gg-gtttagt--gg-gagctgccccc-aacctgacaggg--cgct
B D                    Gibbon  t----gg---gcagcagctgtca-ggg-gtttagt--gg-gagcttccccc-aacctgccaggg--tgct
B D                    Rhesus  t----gg---gcagcagctgtca-ggg-gtttagt--gg-gagctgccccc-aacctgcgaggg--cgct
B D       Crab-eating macaque  t----gg---gcagcagctgtca-ggg-gtttagt--gg-gagctgccccc-aacctgcgaggg--cgct
B D                    Baboon  t----gg---gcagcagctgtca-ggg-gtttagt--gg-gagctgccccc-aacctgccaggg--cgct
B D              Green monkey  t----gg---gcatcagctgtca-ggg-gtttagt--gg-gagctgccccc-aacctgccaggg--cgct
B D                  Marmoset  t----cg---gcagcagctgtca-ggg-gtttagt--gg-gagctgccccc-aacctgccagga--cgct
B D           Squirrel monkey  t----gg---gcagcagctgtca-ggg-gtttagt--gg-gagctgccccc-aacctgccagga--cgct
B D                  Bushbaby  t----gg---gcagcagctgtca-ggg-gtttagc--gg-gggctgcccta-gacttgccagta--ctct
           Chinese tree shrew  t----gg---gcagcagctgtca-gag-gtttagc--gg-gtgctgccccc-gacctgccagga--cgct
B D                  Squirrel  t----gg---gtggcagctgtca-ggg-atttagc--gg-gggctgccccc-aacctgcctggg--cgct
       Lesser Egyptian jerboa  t----gt---gcggcagctgtca-ggg-gtttagc--gg-gggctgcctgc-gacctgccagga--cgct
                 Prairie vole  t----gg---gtaacagctgtca-ggg-gtttagc--ta-gggctgcctcc-aacctgccaga---cgct
B D           Chinese hamster  t-----g---gcggcagctgtca-ggg-gtttag-------------ctcc-gacctgccagaa--cgct
               Golden hamster  t----gg---gcagcagctgtca-ggg-ctttagc--ta-aggctgcctcc-gacctgccagat--cgct
B D                     Mouse  t----gg---gtagcagctgtca-ggg-gtttagc--ga-gggctgcctcc-gacctgccagaa--cgct
B D                       Rat  t----gg---gtagcagctgtca-ggg-gtttagc--ta-gggctgcctcc-aacctgccagaa--cgct
B D            Naked mole-rat  t----gc---gccacagctgtcg-ggg-gctcggc-----aggccgcc--cggacctcccagga--cgcc
B D                Guinea pig  t----gg---gccacaactgt---ggg-acttaac--tgggggccgcc--c-gacgtgccagga--cgct
                   Chinchilla  t----gg---gccagaagtgt-g-ggg-gcttagc--taggggccgcc--c-gacctgccaggg--tgct
             Brush-tailed rat  t----gg---gccacgattgtca-gag-gcttagc--cgggggttgcc--c-gacctgccagga--cgct
B D                    Rabbit  c----gg---gcggcagctgtca-ggg-gcttagc--gg-cggctgccccc-gacctgccaggg--cgct
B D                      Pika  c----gg---gcagcagctgtcacggg-gcttagc--ag-cggctgccccc-gacctgccagat--cgct
B D                       Pig  t----gg---gcagcagctgtca-ggg-gtttagc--gg-gggctgccccc--acctgccagga--cgct
B D                    Alpaca  c----gg---gcagcagctgtcc-ggg-gcttagc--gg-gggctgccctc--acctgccagga--cgct
               Bactrian camel  c----gg---gcagcagctgtcc-ggg-gcttagc--gg-gggctgccctc--acctgccagga--cgct
B D                   Dolphin  t----gggcagcagcagctgtca-ggg-gtttagc-ggg-gggctgccccc--acctgctggga--cgct
                 Killer whale  t----gggcagcagcagctgtca-ggg-gtttagc-ggg-gggctgccccc--acctgctggga--cgct
             Tibetan antelope  t----gg---gcagcagctgtta-ggg-gtttagc--gg-gggctgccccc--acctgccagga--tgct
B D                       Cow  t----gg---gcagcagctgtta-ggg-gtttagc--gg-gggctgccccc--acctgccggga--cgct
B D                     Sheep  t----gg---gcagcagctgtta-ggg-gtttagc--gg-gggctgccccc--acctgccagga--tgct
                Domestic goat  t----gg---gcagcagctgtta-ggg-gtttagc--gg-gggctgccccc--acctgccagga--tgct
B D                     Horse  t----gg---gcagcagctgtca-ggg-gtttagc--gg-gggctgccccc--acctgccagga--cgct
B D          White rhinoceros  t----gg---gcagcagctgtca-ggg-gtttagc--gg-gggccgccccc--acctgccagga--cgct
B D                       Cat  t----gg---gcagcagctgcca-ggg-gtttagc--gg-gggctgccccc--acctgccggga--cgct
B D                       Dog  t----gg---gcagcagctgtca-ggg-gtttagc--gg-gggctgccccc--acctgccggga--cgct
B D                   Ferret   t----gg---gcagcagctgtta-ggg-gcttagc--gg-gggctgccccc--acctgctggga--tgct
B D                     Panda  t----gg---gcagcagctgtca-aag-gtttagc--gg-gggctgccccc--acctgccggga--cgct
               Pacific walrus  t----gg---gcagcagctgtca-ggg-gttta-c--ag-gggctgccccc--acctgccggga--cgct
                 Weddell seal  t----gg---gcagcagctgtca-ggg-gtttagc--gg-gggctgccccc--acctgccggga--cgct
             Black flying-fox  c----gg---gcagcagctgtca-agg-gtttaac--gg-gggctgcccgc--acctgcccaga--cact
B D                   Megabat  c----gg---gcagcagctgtca-agg-gtttaac--gg-gggctgcccgc--acctgcccaga--cact
                Big brown bat  t----gg---gaagcagctgtc----g-gggttgg--cg-gggctg-cccc--acctgccggga--cgct
         David's myotis (bat)  t----gg---gaagcagctgtc---gg-gggtgag--cg-gggccgccccc--acctgccagga--cgct
B D                  Microbat  t----gg---gaagcagctgtcg-ggg-gggtgag--cg-gggccgccccc--acctgccagga--cact
B D                  Hedgehog  tcgcagg---cccgcagctgtc--ggg-gcgtagctggg-gggccgcaccc--acctgccagcc--tcag
              Star-nosed mole  t----gg---ggagcagctgtc--agg-agttagc--gg-gggctgccctc--acctgccagga--cgcg
B D                  Elephant  t----gg---gcagcagctgtca-ggg-actta-------gggctgcccct-gacctgccaggg--cgct
          Cape elephant shrew  c----gg---gcagcagctgtca-ggg-acttagc--at-gggctgcacct-gat---ccaggggccact
B D                   Manatee  t----gg---gcagcagctgtca-ggg-acttagc--cg-gggctgccccc-gacctgccgggg--cact
             Cape golden mole  t----gg---gcagcagctgaga-gag-acttagc--g--gggccgcttct-ggactgcccaggg--gct
B D                    Tenrec  t----gg---gccgcagctgtca-ggg-tcttagt--g--ggacaacccca-gatttgccgggggccgct
                     Aardvark  t----gg---gcagcagctgtca-ggg-agatagc--gg-gggctgcccct-gaccttcctggg--agct
B D                 Armadillo  t----gg---gcagcagctgtca-gggtgcgtagc--cc-aagtcgcgccc-gacctgtcaggg--cgct
B D                     Shrew  ======================================================================
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  gacttcattctc---tgcagtggcgg----cttcg-ccttgtttaggaccttcctttagactca-gctgt
                        Chimp  gacttcattctc---tgcag-------------------tgtttaggaccttcctttagactca-gctgt
                      Gorilla  gacttcattctc---tgcagtggcgg----cttcg-ccttgtttaggaccttcctttagactca-gctgt
                    Orangutan  gacttcattctc---tgcagtggcgg----cttcg-gcctgtttaggaccttcgtttagactca-gctgt
                       Gibbon  gacttcattctc---tgcagtggcgg----cgtca-ccctgtttaggaccttcctttagactca-gctgt
                       Rhesus  gacttcattctc---tgcagtggcga----cttcg-ccctgtttaggaccttcctttagactca-gctgt
          Crab-eating macaque  gacttcattctc---tgcagtggcga----cttcg-ccctgtttaggaccttcctttagactca-gctgt
                       Baboon  gacttcattctc---tgcagtggcgg----cttcg-ccctgtttaggaccttcctttagactca-gctgt
                 Green monkey  gacttcattctc---tgcagtggcgg----cttcg-ccctgttttggaccttcctttagactca-gctgt
                     Marmoset  gacttcattctc---tgcggtggcgg----cttcg-ccccgtttagtaccttcctgtagactca-gctgt
              Squirrel monkey  gacttcattctc---tgcagtggcgg----cttcg-ccctgtttagtaccttcctgtagactca-gctgt
                     Bushbaby  gacttcattctc---tgcagtggcag----cttcg-tcctgtataggatcttcattttgactca-gttgt
           Chinese tree shrew  gacttcattctc---ctcagtggagg----cttag-ccctgtttaggagcttccttttgactca-gctgc
                     Squirrel  gacttccttctcctcctcggtgctgt----cttcg-ctgcttttagcatctttctttcaactca-gctgt
       Lesser Egyptian jerboa  gacttcattctc-----------------------------------------ctctcacctca-gctgt
                 Prairie vole  gacttcattctc---cttaatggtga----cttcg-tctcgtttagga----acttgcacctca-gcaat
              Chinese hamster  gacttcattctc---cttagtggtga----cttct-ccgcgtttagga----tcttccaactca-gctat
               Golden hamster  gacttcattctc---cttagtggtga----cttcg-ccgcatttagga----tcttccaacgca-gcctt
                        Mouse  gacttcattctc---cttagtggtga----cttcg-ccacgtttagga----ccttctatctca-gctgt
                          Rat  gacttcattctc---cttagtggtga----cttcg-ccacgtttagga----ccttctagctca-gctgt
               Naked mole-rat  ggcttcagtccg-----------------------------------------ctttcacc-ca-gtcca
                   Guinea pig  gacttcatgctg-----------------------------------------cttccacc-ca-gctga
                   Chinchilla  gacttcattctg-----------------------------------------ctttcacc-ca-gccgc
             Brush-tailed rat  aacttcatcctg-----------------------------------------cttgcaac-ca-gccaa
                       Rabbit  gacttcgttctc---ctccggggcgg----cttcg-cccggtttaggggcttcctctgcactca-gctgt
                         Pika  gaccaccgtctg---ctccgcgacgg----cttcg-ccccgtt-------------tgcactca-gctgc
                          Pig  gacttcattctc---ctctgtggcag----cttcg-cccgatctaagagcttcctttccacgca-gctgt
                       Alpaca  gacttcattctc------agtggcag----cttcg-ccctgtctaggagcttcctttcaactca-gctgt
               Bactrian camel  gacttcattctc------agtggcag----cttcg-cccggtctaggagcttcctttcaactca-gctgt
                      Dolphin  gacttcattctt---ctcaggggcag----cttca-cccggtctagcagcttcctttccacgca-gctgt
                 Killer whale  gacttcattctt---ctcaggggcag----cttca-cccggtctagcagcttcctttccacgca-gctgt
             Tibetan antelope  gacttcatactc---ccgagtagcag----cttcg-cccggtttaggagcttcctttccacgca-gctgt
                          Cow  gacttcatactc---ccgagtagcag----cttca-cccggtttaggagcttcttttccacgca-gctgt
                        Sheep  gacttcatactc---ccgagtagcag----cttcg-cccggtttaggagcttcctttccacgca-gctgt
                Domestic goat  gacttcatactc---ccgagtagcag----cttcg-ccgggtttaggagcttcctttccacgca-gctgt
                        Horse  gacttcattctc---ctcagtggcag----cgtcg-cctcatctaggagcttcttttccacgca-gctgt
             White rhinoceros  gactttattctc---ctcagtggcag----catcg-cctcatctaggagcttccctttaacgca-gctgt
                          Cat  gacttcattttc---ctcagtggcag----cttcg-ccccgtcaaggagcttcctttcgacgca-gctgt
                          Dog  gacttcattttc---ctgagtggtag----cttcg-ccccgtcagggagcttcctgtcaccgca-gctgt
                      Ferret   gacttcattttc---ctcagtggcag----cttcg-ccccatcaaggagcttcctttcaacgca-gctgt
                        Panda  gacttcactttc---ctcagtggcag----cttcgcccccgtcaaggagcttcctttcaacgca-gctgt
               Pacific walrus  gacttcattttc---ctcactggcag----cttcg-ccccatcaaggagctccttttcaacgca-gctgc
                 Weddell seal  gacttcattttc---ctcagtggcag----cttcg-ccccatcaaggagcttcctttcaacgca-gctgt
             Black flying-fox  gacttcattccc---cttagtggcag----ctttg-ccccgtctagaagcttccttttaatgca-gctg-
                      Megabat  gacttcattccc---cttagtggcag----ctttg-ccccgtctagaagcttccttttaatgca-gctg-
                Big brown bat  gacttcattccc---ctccgcggccg----cttcg-cc--gtccaggagccccctttccacaccggctg-
         David's myotis (bat)  gagttcattccc---ctccgtggcag----cttct-ccccgtctcggagcctcctttcagcacaggcgg-
                     Microbat  gacttcattccc---ctccgtggcag----cttcg-ccctgtctcggagcttcctttcaacacaggcgg-
                     Hedgehog  g--------------cctcctgcatg----ct---------cctaggagcttcttttcggctca-gtc--
              Star-nosed mole  g--------------cttagtggcaa----cttgg-ccc-gtctaggctcttcctttcagcgca-gctgt
                     Elephant  gacttcattctc---cccactgacgg----cttcg-ccccatctaggaacttcctttcaactca-gccgt
          Cape elephant shrew  gacttcattctt---ctcacatttgg----cctcg-ccccagccaagagctttcttt----------ggc
                      Manatee  gacttcattctc---ctcactgacgg----cttcg-ccccatctaggagcttcctttcaactca-gccgt
             Cape golden mole  gactttattctc---ctagccgccgggagcttcct-ggcgagggggtgggg----------gtg-ggcg-
                       Tenrec  gactcctttctc---ttgaatgccgg----cttcg-gcccagctggcagcgcccttccaatccg-gccg-
                     Aardvark  gacttcattctc---cacactgacga----cttcg-cgc-gtctaggagcttgcttttaactca-gctgt
                    Armadillo  ggcttagttctc---tgcagtggaag----ctttt-ccccttcaagaagtttcctttcagcgta-gctgt
                        Shrew  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  gcttctcgtgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
                        Chimp  gcttctcgtgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
                      Gorilla  gcttctcgtgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
                    Orangutan  gcttctcgtgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
                       Gibbon  gcttctcttgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
                       Rhesus  gcttctcgtgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
          Crab-eating macaque  gcttctcgtgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
                       Baboon  gcttctcgtgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
                 Green monkey  gcttctcatgtggctg-ctgtatatttg----aa--tctac----------tatt---------------
                     Marmoset  gcttctcgtgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
              Squirrel monkey  gcttctcgtgtggctg-ctgtatatttg----ga--tctac----------tatt---------------
                     Bushbaby  gcttctccggtggctg-ctgtatatttg----gc--tcaac----------agtt---------------
           Chinese tree shrew  acttctcgggtagctg-ctgtatatttg----ga--tcaac----------tatt---------------
                     Squirrel  gcttttccgatgacca-c--tatatttg----ga--tcaac----------tgtt---------------
       Lesser Egyptian jerboa  gcttctcgggtggccg-ttgtatatttg----ga--tcatc----------tatg---------------
                 Prairie vole  gcttctcatgtggctg-ttgtatatttg----ga--ttcac----------tgtt---------------
              Chinese hamster  gcttctcatgtggctg-ttgtatatttg----ga--ttcac----------tatt---------------
               Golden hamster  gcttctcctgtggctg-ttgtatatttg----ga--ttcac----------tatt---------------
                        Mouse  gcttctcatgtggctg-tcgtatatttg----ga--ctgac----------tatt---------------
                          Rat  gcttctcatgtggctg-tcatatatttggactga--ctgac----------tatt---------------
               Naked mole-rat  gcttctc-ggtggccg-cc-ttcatttg----ca--tctgc----------tgtt---------------
                   Guinea pig  gtttctcgggtggcca-ct-tatatttg----ga--tccac----------tgtt---------------
                   Chinchilla  gcttctcgggtgg-cg-ct-tatgtttg----aa--tcccc----------tgct---------------
             Brush-tailed rat  gcttttctggtggcca-ct-tatgtttg----ga--tccac----------tgtt---------------
                       Rabbit  gcttctccagtgactg-ctgggtatttg----ga--tcagc----------tgtt---------------
                         Pika  gcttctccagtgactg-ctgtatattta----gatctcaag----------tgtc---------------
                          Pig  gcttttcgggtggccg-ctacatatttg----ga--ttaac----------t-tt---------------
                       Alpaca  gcttttcg-gtggccg-ctacatatttg----ga--tcaac----------t-ta---------------
               Bactrian camel  gcttttcg-gtggccg-ctacatatttg----ga--tcaac----------t-ta---------------
                      Dolphin  gcttttcgggtggccg-ctgcatatttg----ga--tcaac----------t-tt---------------
                 Killer whale  gcttttcgggtggccg-ctgcatatttg----ga--tcaac----------t-tt---------------
             Tibetan antelope  gctttttgagtggctg-ctgcatatttg----ga--tcaac----------t-tt---------------
                          Cow  gcttttcgagtggccg-ctgcatatttg----ga--tcaac----------t-tt---------------
                        Sheep  gctttttgagtggctg-ctgcatatttg----ga--tcaac----------t-tt---------------
                Domestic goat  gctttttgagtggctg-ctgcatatttg----ga--tcgac----------t-tt---------------
                        Horse  gatggtccggtagccg-ctgcatattta----ga--tcaac----------t-tt---------------
             White rhinoceros  tctgttccggtggccg-ctgcatattta----ga--tccac----------t-gt---------------
                          Cat  gctgctccggcggccg-ctgcgtatttg----ga--tcaac----------t-tt---------------
                          Dog  gcttctccagtggctg-ctgcctatttg----ga--ccaac----------t-ttatttatttatttatt
                      Ferret   gcttctccggtggccg-ctgcctatttg----ga--tcaac----------t-tt---------------
                        Panda  gcttctccggtggccg-ctgcctgtttg----ga--tcaac----------t-tt---------------
               Pacific walrus  gcttctccggtggccg-ctgcctatttg----ga--taaac----------t-tt---------------
                 Weddell seal  gcttctccggtggccg-ctgcctatttg----ga--tcaac----------t-tt---------------
             Black flying-fox  --tcctcgggtggccg-ctgcatagttg----ga--tcaac----------t-tt---------------
                      Megabat  --tcctcgggtggccg-ctgcatatttg----ca--tcaac----------t-tt---------------
                Big brown bat  --tccttgggcggccg-ccgcctgtttg----ga--tcagc----------t-tt---------------
         David's myotis (bat)  --tcctggggtggccg-ctgagtgtttg----ga--tcaac----------t-tt---------------
                     Microbat  --ccctggggtggctg-ctgcgtgtttg----ga--tcaac----------t-tt---------------
                     Hedgehog  -----------------tggcacatttg----aa--tccac----------t-tt---------------
              Star-nosed mole  gtttctcatatagcccgcagcatgtttg----ga--ataac----------t-tt---------------
                     Elephant  gcttctagagggactg-ctgcatatttg----ga--tcagc----------tatt---------------
          Cape elephant shrew  tcttgtatattaacta-ttg-----ttg----tt--cccccgccctccccatatt---------------
                      Manatee  gcttctagggtggctg-ctgcatatttg----ga--tccgc----------tatt---------------
             Cape golden mole  -------------ctg-c---------------a--acagc----------gctt---------------
                       Tenrec  -------------ctg-ctgctgattga----ga--tcagc----------gatg---------------
                     Aardvark  gcttcttggtgg-ctg-ctgcatacttg----ga--tcagt----------gatt---------------
                    Armadillo  gctttttgggtggccg-ctgtaaatttg----gg--tca------------tatt---------------
                        Shrew  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  -------------------------------------------aaaataa-------cc-t---------
                        Chimp  -------------------------------------------aaaataa-------cc-t---------
                      Gorilla  -------------------------------------------aaaataa-------cc-t---------
                    Orangutan  -------------------------------------------aaaataa-------cc-t---------
                       Gibbon  -------------------------------------------aaaataa-------cc-t---------
                       Rhesus  -------------------------------------------aaaataa-------tc-t---------
          Crab-eating macaque  -------------------------------------------aaaataa-------tc-t---------
                       Baboon  -------------------------------------------aaaataa-------cc-t---------
                 Green monkey  -------------------------------------------aaaataa-------cc-t---------
                     Marmoset  -------------------------------------------aaaataa-------cc-t---------
              Squirrel monkey  -------------------------------------------aaaataa-------cc-t---------
                     Bushbaby  -------------------------------------------aaaataa-------cc-t---------
           Chinese tree shrew  -------------------------------------------aaagtaa-------ca-t---------
                     Squirrel  -------------------------------------------gaaatag-------cc-t---------
       Lesser Egyptian jerboa  -------------------------------------------aaaatag-------cc-c---------
                 Prairie vole  -------------------------------------------caaataa-------cc-t---------
              Chinese hamster  -------------------------------------------caaatac-----g-cc-c---------
               Golden hamster  -------------------------------------------caaatac-------cc-c---------
                        Mouse  -------------------------------------------caaataa-------cc-t----cctcc
                          Rat  -------------------------------------------caaataa-------cc-t---------
               Naked mole-rat  -------------------------------------------aaaataa-------cg-g---------
                   Guinea pig  -------------------------------------------aaaataa-------cc-g---------
                   Chinchilla  -------------------------------------------aaaataa-------cc-a---------
             Brush-tailed rat  -------------------------------------------aaaataa-------cc-a---------
                       Rabbit  -------------------------------------------aaaataa-------ccgc---------
                         Pika  -------------------------------------------aaaataa-------tc-t---------
                          Pig  -------------------------------------------aaaatag-----tctc-c---------
                       Alpaca  -------------------------------------------aaaatag-----cctc-c---------
               Bactrian camel  -------------------------------------------aaaatag-----cctc-c---------
                      Dolphin  -------------------------------------------aaaatag-----tctc-c---------
                 Killer whale  -------------------------------------------aaaatag-----cctc-c---------
             Tibetan antelope  -------------------------------------------aaaatag-------tc-c---------
                          Cow  -------------------------------------------aaaatag-------tc-c---------
                        Sheep  -------------------------------------------aaaatag-------tc-c---------
                Domestic goat  -------------------------------------------aaaatag-------tc-c---------
                        Horse  -------------------------------------------aaaataa-------gt-c---------
             White rhinoceros  -------------------------------------------aaaataa-------gc-c---------
                          Cat  -------------------------------------------aaaataa-------gc-c---------
                          Dog  tcttaaatattttatttatttattcatgagagacacacacagaaagagag-------gc-caagacacag
                      Ferret   -------------------------------------------aaaataa-------gc-c---------
                        Panda  -------------------------------------------aaaataa-------gc-c---------
               Pacific walrus  ------------------------------------------aaaaataa-------gc-c---------
                 Weddell seal  -------------------------------------------aaaataa-------gc-c---------
             Black flying-fox  -------------------------------------------aaaataa-------gc-c---------
                      Megabat  -------------------------------------------aaaataa-------gc-c---------
                Big brown bat  -------------------------------------------aaaatca-------gc-c---------
         David's myotis (bat)  -------------------------------------------aaaagaa-------gc-c---------
                     Microbat  -------------------------------------------aaaagaa-------gc-c---------
                     Hedgehog  -------------------------------------------aaaataa-------ac-t---------
              Star-nosed mole  -------------------------------------------aaaataa-------aa-c---------
                     Elephant  -------------------------------------------aaagtaa-------cc-c---------
          Cape elephant shrew  -------------------------------------------aaagtacatattctcc-t---------
                      Manatee  -------------------------------------------aaaataa-------cc-c---------
             Cape golden mole  -------------------------------------------aaaacac-------cc-c---------
                       Tenrec  -------------------------------------------aaaacat-------cc-c---------
                     Aardvark  -------------------------------------------aaaataa-------ca-t---------
                    Armadillo  -------------------------------------------tggggga-------cc-t---------
                        Shrew  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  -----------------c---cct---------------------cc
                        Chimp  -----------------c---cct---------------------cc
                      Gorilla  -----------------c---cct---------------------cc
                    Orangutan  -----------------c---cct---------------------ct
                       Gibbon  -----------------c---cct---------------------cc
                       Rhesus  -----------------c---cct---------------------cc
          Crab-eating macaque  -----------------c---cct---------------------cc
                       Baboon  -----------------c---cct---------------------cc
                 Green monkey  -----------------c---cct---------------------cc
                     Marmoset  -----------------c---cct---------------------cc
              Squirrel monkey  -----------------c---cct---------------------cc
                     Bushbaby  -----------------c---cct---------------------ct
           Chinese tree shrew  ----------------------ct---------------------cc
                     Squirrel  -----------------c---cct---------------------ct
       Lesser Egyptian jerboa  -----------------t---cct---------------------cc
                 Prairie vole  -----------------a---ccc---------------------cc
              Chinese hamster  -----------------c---ccc---------------------cc
               Golden hamster  -----------------c---ctc---------------------cc
                        Mouse  ccttccctcccccccccc---ccc---------------------cc
                          Rat  -----------------c---ccc---------------------cc
               Naked mole-rat  -----------------a---tct---------------------tt
                   Guinea pig  -----------------c---ttt---------------------ct
                   Chinchilla  -----------------c---cct---------------------cg
             Brush-tailed rat  -----------------c---cct---------------------cg
                       Rabbit  -----------------c---cct---------------------ct
                         Pika  -----------------c---cct---------------------ct
                          Pig  -----------------t---ctc---------------------c-
                       Alpaca  -----------------t---ctc---------------------c-
               Bactrian camel  -----------------t---ctc---------------------c-
                      Dolphin  -----------------t---ctc---------------------c-
                 Killer whale  -----------------t---ctc---------------------c-
             Tibetan antelope  -----------------t---ctt---------------------c-
                          Cow  -----------------t---ctc---------------------c-
                        Sheep  -----------------t---ctt---------------------c-
                Domestic goat  -----------------t---ctt---------------------c-
                        Horse  -----------------c---cct---------------------ct
             White rhinoceros  -----------------c---cct---------------------ct
                          Cat  -----------------t---ctt---------------------ct
                          Dog  gcagagggagaagcaggc---tcc---------------------at
                      Ferret   -----------------t---tct---------------------ct
                        Panda  -----------------t---tct---------------------ct
               Pacific walrus  -----------------t---ttt---------------------ct
                 Weddell seal  -----------------t---ttt---------------------ct
             Black flying-fox  -----------------c---cct---------------------ct
                      Megabat  -----------------c---cct---------------------ct
                Big brown bat  -----------------t---ccc---------------------cc
         David's myotis (bat)  ----------------tt---ccc---------------------cc
                     Microbat  ----------------tt---ccc---------------------cc
                     Hedgehog  -----------------c---cttcccctattttaaaataagctcct
              Star-nosed mole  -----------------c---tct---------------------ct
                     Elephant  -----------------c---cct---------------------cc
          Cape elephant shrew  -----------------t---cct---------------------cc
                      Manatee  -----------------c---cac---------------------cc
             Cape golden mole  -----------------cacaccc---------------------cc
                       Tenrec  -----------------t---ccc---------------------ta
                     Aardvark  -----------------c---ccc---------------------ca
                    Armadillo  -----------------g---cc------------------------
                        Shrew  ===============================================
                  Spotted gar  -----------------------------------------------
                X. tropicalis  ===============================================
                       Lizard  ===============================================
       Spiny softshell turtle  ===============================================
     Chinese softshell turtle  ===============================================
               Painted turtle  ===============================================
              Green seaturtle  ===============================================
                       Turkey  ===============================================
           Tibetan ground jay  ===============================================
                  Zebra finch  ===============================================
          Medium ground finch  ===============================================
       White-throated sparrow  ===============================================
          Collared flycatcher  ===============================================
             Peregrine falcon  ===============================================
                 Saker falcon  ===============================================
                  Rock pigeon  ===============================================
                     Platypus  ===============================================
           American alligator  ===============================================
                      Opossum  ===============================================
              Tasmanian devil  ===============================================

Inserts between block 16 and 17 in window
B D                    Horse 11bp
B D         White rhinoceros 10bp
B D                      Cat 2bp
B D                      Dog 125bp
B D                  Ferret  2bp
B D                    Panda 2bp
              Pacific walrus 2bp
                Weddell seal 2bp
B D                 Elephant 1bp
         Cape elephant shrew 8bp
            Cape golden mole 15bp
B D                   Tenrec 1bp
B D                Armadillo 1bp

Alignment block 17 of 414 in window, 60914987 - 60915050, 64 bps 
B D                     Human  tca--cc-----tct----ccatggctt--tctc-gttcga------------c-cctc----acggttt
B D                     Chimp  tca--cc-----tct----ccatggctt--tctc-gttcga------------c-cctc----acggttt
B D                   Gorilla  tca--cc-----tct----ccatggctt--tctc-gttcga------------c-cctc----acggttt
B D                 Orangutan  tca--cc-----tct----tcatggctt--tctc-gttgta------------c-tctc----acggttt
B D                    Gibbon  tca--cc-----tct----ccgtggctt--tctc-gttcta------------c-cctc----acggttt
B D                    Rhesus  tca--cc-----tct----ccatggctt--tctg-gttcta------------c-cctc----acgattt
B D       Crab-eating macaque  tca--cc-----tct----ccatggctt--tctg-gttcta------------c-cctc----acgattt
B D                    Baboon  tca--cc-----tct----ccatggctt--tctg-gttcta------------c-cctc----acgattt
B D              Green monkey  tca--cc-----tct----cgatggctt--tctc-tttcta------------c-cctc----acgattt
B D                  Marmoset  tca--cc-----tct----ccatgactt--tctc-tttcta------------c-cctc----acggttt
B D           Squirrel monkey  tca--cc-----tct----ccatgactt--tctc-tttcta------------c-cctc----acggttt
B D                  Bushbaby  tcg--cc-----gct----ccatgtttc--tcca-ttgctt------------c-cctc----gtggctt
           Chinese tree shrew  cca--cc-----tct----ccgtgtctc--tcca-tttctg------------c-cctc----ttggctt
B D                  Squirrel  ccc-----------------tacctctt--catg--tctta------------c-cctc----cccactt
       Lesser Egyptian jerboa  ccc-ttc-----ccc----tcatgcctc--tatg--cctta------------c-gcta----gtggctt
                 Prairie vole  cac---t-----tct----tcaagtctt--tatg--tctta------------c-actt----gtggctt
B D           Chinese hamster  ctc-------------------caagtc--tatg--gctta------------c-cctt----gtggctt
               Golden hamster  ccc-------------------agtctt--tatg--gctta------------c-cctt----gtggctt
B D                     Mouse  gcc-acc-----tct----ccatgtctt--tatg--tccta------------c-actt----gtggctt
B D                       Rat  acc-acc-----tct----ccatgtctt--tatg--tccta------------c-actt----gtggctt
B D            Naked mole-rat  tcc--cac-cttcct----ctccgtgtc--tatg--tctcg------------c-attc----gtggctt
B D                Guinea pig  tct--ca-----cct----ctccgtgtc--tatg--tctta------------c-actt----agtgctt
                   Chinchilla  tcc--ct-----cct----ctccgtgtc--tctg--tcttg------------c-actc----gctgctt
             Brush-tailed rat  tcc--ga-----ccg----ctccgtggc--tc----tctta------------c-acta----attgctt
B D                    Rabbit  ccccgcc-----tct----tcatgtctc--tttatttttta------------c-tctc----gcagctt
B D                      Pika  ccccacc-----tct----agttgtctc--tttg-tttcta------------c-tctc----acagctg
B D                       Pig  -------gcacctct----ccatggctt--tcca-ttgcta------------c-tctctctagccgctt
B D                    Alpaca  -------gcatctct----tcatggctc--tgca-ttgcta------------c-cgac----actgctt
               Bactrian camel  -------gcatctct----ccatggctc--tgca-ttgcta------------c-cgtc----accgctt
B D                   Dolphin  -------gcacctct----ccatggctc--tcca-ttgcca------------c-cctc----accgctt
                 Killer whale  -------gcacctct----ccatggctc--tcca-ttgcca------------c-cctc----accgctt
             Tibetan antelope  -------gtacctct----ccatggctc--tccg-ttgtca------------t-gctc----accgctt
B D                       Cow  -------gtacctct----ccatggctc--tccg-ttgtca------------t-tctc----accgctt
B D                     Sheep  -------gtacctct----ccttggctc--tccg-ttgtcg------------t-gctc----accgctt
                Domestic goat  -------gtacctct----ccttggctc--tccg-tt---g------------t-gctc----accgctt
B D                     Horse  -------------------ccatggctc--cccg-ttgcta------------c-cctc----aaggctt
B D          White rhinoceros  -------------------ccatggctc--ccca-ttgcta------------c-cctc----acggcct
B D                       Cat  -------------------ccgcttctc--cc---ttgcta------------c-t--------------
B D                       Dog  -------------------ctacgtctc--cc---ttgcta------------c-tctg----acagctt
B D                   Ferret   -------------------ccacctctc--cc---ttgcca------------c-tctc----gcagctt
B D                     Panda  -------------------tcgcctctc--cc---ttgcta------------c-tctc----acagctt
               Pacific walrus  -------------------ccacctctc--cc---ttgcta------------c-tctc----acagctt
                 Weddell seal  -------------------ccacctctc--cc---ttgcta------------c-tctc----acagctt
             Black flying-fox  ---------cccaacttctccatggctc--tccg-ttgcta------------c-cctc----atgggtt
B D                   Megabat  ---------cccaacttctccatggctc--tccg-ttgcta------------c-cctc----acgggtt
                Big brown bat  ---------ac--ctgtctgcatggctc--cccg---gctgccctccacggcac-cctc----cacggct
         David's myotis (bat)  ---------acctctgtctgcatggctc--cccg-ttgctg-cctcccctgcac-cctc----ctggcct
B D                  Microbat  ---------acctctgtctgcatggctc--cccg-ttgctg-cctcccctgcac-cctc----tcggctt
B D                  Hedgehog  ---------------------ctgcctcctccca-ttgctc------------cgctcc----gaaactc
              Star-nosed mole  ---------------------ctggctc--tcca-ctgcta------------c-cttc----agggctt
B D                  Elephant  ---------actctt----cgatgtctc--tccg-tttcta------------t-actc----acgggtt
          Cape elephant shrew  ---------atctct----caatg------tcca-tttata------------t-tatc----ttaggtt
B D                   Manatee  ---------acctct----cgatgcctc--tcca-tttcta------------c-actc----acgggtg
             Cape golden mole  -------tcatctct----caa----------ca-tttcta------------c-acgc----acaggtt
B D                    Tenrec  ---------actttt----cga----------ca-cttcta------------c-actc----aggggtt
                     Aardvark  ------------cct----ccacatcta--tcca-tttcta------------c-actc----tcgggtt
B D                 Armadillo  ----------------------------------------------------------------------
B D                     Shrew  ======================================================================
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  ct----------------------------tggc-aggt-tgc-t-aatattcattt
                        Chimp  ct----------------------------tggc-aggt-tgc-t-aatattcattt
                      Gorilla  ct----------------------------tggc-aggt-tgc-t-aatattcattt
                    Orangutan  ct----------------------------tggc-aggt-tgc-t-aatattcattt
                       Gibbon  ct----------------------------tggc-aggt-tgc-t-aatattcattt
                       Rhesus  ct----------------------------tggc-aggt-tgc-t-aatattcattt
          Crab-eating macaque  ct----------------------------tggc-aggt-tgc-t-aatattcattt
                       Baboon  ct----------------------------tggc-gggt-tgc-t-aatattcattt
                 Green monkey  ct----------------------------tgtc-gggt-tgt-t-aatattcattt
                     Marmoset  ct----------------------------tggc-gggt-cgc-t-aatattcattt
              Squirrel monkey  ct----------------------------tggc-ggct-cgc-t-aatattcattt
                     Bushbaby  ct----------------------------tggc-gggtcttc-t-agtattgattt
           Chinese tree shrew  tt----------------------------tggc-agac-cgc-tcagtattcattt
                     Squirrel  ct----------------------------tggc-tggc-ccc-t-gatattcactt
       Lesser Egyptian jerboa  ct----------------------------tggcagagc-ctt-t-aatattcatct
                 Prairie vole  ct----------------------------tggc-gggt-ttc-t-gatattttttt
              Chinese hamster  ct----------------------------tggc-gggc-ttc-a-gatattctttt
               Golden hamster  ct----------------------------tggc-gggc-ttc-t-gatattctttt
                        Mouse  ct----------------------------tggcagggc-ttc-t-gatactcattt
                          Rat  ct----------------------------tggcagggc-ttc-t-gatactcattt
               Naked mole-rat  ct----------------------------tgcc-gggc-ctc-t-gatactcatct
                   Guinea pig  ct----------------------------tgat-gagc-gt---------------
                   Chinchilla  ct----------------------------tgac-gagc-ccc-t-aatactcattt
             Brush-tailed rat  tttttattttttaatgttactcattgcttctgag-gagc-ctc-t-gatactc----
                       Rabbit  ct----------------------------tggc-gggc-ctc-g-aatattcattt
                         Pika  ct----------------------------tggt-ggac-ctc-c-aatgcacattg
                          Pig  ct----------------------------tggc-cggc-ttc-t-agtactcattt
                       Alpaca  ct----------------------------tggc-gggc-ttc-t-aatact-----
               Bactrian camel  ct----------------------------tggc-gggc-ttc-t-aatact-----
                      Dolphin  ct----------------------------tggc-gggc-ttc-t-aatactcattt
                 Killer whale  ct----------------------------tggc-gggc-ttc-t-aatactcattt
             Tibetan antelope  ct----------------------------tggc-gggc-ttc-t-gacactcattt
                          Cow  ct----------------------------t----gggc-ttctt-gacactcattt
                        Sheep  ct----------------------------tggc-gggc-ttc-t-gacactcattt
                Domestic goat  ct----------------------------tggc-gggc-ttc-t-gacactcattt
                        Horse  ct----------------------------tggc-gggc-ctc-t-aatattcattt
             White rhinoceros  ct----------------------------tggc-ggac-ctg-t-aatactcattt
                          Cat  -t----------------------------tggc-gagt-ttc-t-aatattcattt
                          Dog  ct----------------------------tgac-gggc-ttc-t-aata----ttt
                      Ferret   ct----------------------------tggc-gggc-ttc-t-aatattcattt
                        Panda  ct----------------------------tggc-gggc-ttc-t-aatactcattt
               Pacific walrus  ct----------------------------tggc-ggtc-ttc-t-aatattcgttt
                 Weddell seal  ct----------------------------tggc-ggtc-ttc-t-aatattccttt
             Black flying-fox  ct----------------------------tggc-gggc-ttc-a-gatattcactt
                      Megabat  ct----------------------------tggc-gggc-ttc-a-gatattcactt
                Big brown bat  ct----------------------------ggcc-aggc-t-------tggtc--cc
         David's myotis (bat)  cg----------------------------ggcc-aggc-ttc-t-aatagtca-cc
                     Microbat  ct----------------------------ggcc-aggc-ttc-t-aatagtca-cc
                     Hedgehog  ct----------------------------tggc-aggc-ctc-c-aacttgcattt
              Star-nosed mole  ct----------------------------tggc-gggc-ctc-c-aatatgcattt
                     Elephant  cc----------------------------tagc-atgc-ctc-t-gatgttaactt
          Cape elephant shrew  cc----------------------------tggt--tgc-ctc-t-aatactagtta
                      Manatee  cc----------------------------tagc-gtgt-ctc-t-aatattcattc
             Cape golden mole  cc----------------------------tggc-atgc-cgc-c-agtattcattt
                       Tenrec  cg----------------------------tgac-----------------------
                     Aardvark  cc----------------------------tgga-gtgc-ctc-t-aatactcgttt
                    Armadillo  ------------------------------------tgc-ctt-t-aatattaattt
                        Shrew  =========================================================
                  Spotted gar  ---------------------------------------------------------
                X. tropicalis  =========================================================
                       Lizard  =========================================================
       Spiny softshell turtle  =========================================================
     Chinese softshell turtle  =========================================================
               Painted turtle  =========================================================
              Green seaturtle  =========================================================
                       Turkey  =========================================================
           Tibetan ground jay  =========================================================
                  Zebra finch  =========================================================
          Medium ground finch  =========================================================
       White-throated sparrow  =========================================================
          Collared flycatcher  =========================================================
             Peregrine falcon  =========================================================
                 Saker falcon  =========================================================
                  Rock pigeon  =========================================================
                     Platypus  =========================================================
           American alligator  =========================================================
                      Opossum  =========================================================
              Tasmanian devil  =========================================================

Inserts between block 17 and 18 in window
                    Aardvark 693bp

Alignment block 18 of 414 in window, 60915051 - 60915077, 27 bps 
B D                     Human  aataaacat-ttat---t-agtcatc----tttcc-t
B D                     Chimp  aataaacat-ttat---t-agtcatc----tttcc-t
B D                   Gorilla  aataaacat-ttat---t-agtcatc----tttcc-t
B D                 Orangutan  aacaagcat-ttat---t-agtcatc----tttcc-t
B D                    Gibbon  aacaagcat-ttat---t-agtcatc----tttcc-t
B D                    Rhesus  aacaagcat-ttat---t-agtcatc----tttcc-t
B D       Crab-eating macaque  aacaagcat-ttat---t-agtcatc----tttcc-t
B D                    Baboon  aacaagcat-ttat---t-agtcatc----tttcc-t
B D              Green monkey  aacaagcat-ttat---t-agtcatc----tttcc-t
B D                  Marmoset  aacaagcat-ttat---t-agtcatc----ttttc-t
B D           Squirrel monkey  aacaagcgt-ttat---t-agtcatc----tttcc-t
B D                  Bushbaby  aacaagcat-ttat---t-agtcatc----gttctgt
           Chinese tree shrew  aagaagcat-t--t---t-agtcatc----ctg---t
B D                  Squirrel  aacaagcct-ttct---t-agtcatc---gttctg-t
       Lesser Egyptian jerboa  agcaagcatcttac---t-agtcatc---tttctg-t
                 Prairie vole  agcaagcat-ttat---t-aatca------ttcta-t
B D           Chinese hamster  agcaagcat-taat---t-agtca------ttcta-t
               Golden hamster  agcaagcat-ttat---t-agtca------ttcta-t
B D                     Mouse  agcaagcac----t---t-agtca------ttcta-t
B D                       Rat  agcaagcac----t---t-agtca------ttcta-t
B D            Naked mole-rat  accaagcat-ttat---t-agtcatcgctcttctg-t
B D                Guinea pig  --------t-ttgt---t-agttatc---tttctg-t
                   Chinchilla  gacaagcat-ttac---t-agtcatc---tttctg-t
             Brush-tailed rat  ----agcgt-ttgt---g-agttatc---tttctg-t
B D                    Rabbit  aacaaacat-ttat---t-agtcatc---tttctg-t
B D                      Pika  aacagacac-tta----------------gttctg-a
B D                       Pig  aacaagcat-ttat---t-aatcact---gttctg-t
B D                    Alpaca  ------cac-ttat---t-agtcatt---gttctg-t
               Bactrian camel  ------cac-ttat---t-agtcatt---gttctg-t
B D                   Dolphin  aacaagcat-ttat---t-agtcatt---gttctg-t
                 Killer whale  aacaagcat-ttat---t-agtcatt---gttctg-t
             Tibetan antelope  aacgaacat-ttat---t-agtcatt---gttctg-t
B D                       Cow  aacaagcat-ttat---t-agtcatt---gttctg-t
B D                     Sheep  aacgaacat-ttat---t-agtcatt---gttctg-t
                Domestic goat  aacgaacat-ttat---t-agtcatt---attctg-t
B D                     Horse  aacaagcac-ttattagt-agtcatc---gttcta-t
B D          White rhinoceros  aacaagcat-ttac---t-agtcatg---gttcta-t
B D                       Cat  aacaagcat-ccat---t-agtcatc---gttctg-c
B D                       Dog  aacaagcat-ctct---t-agtc------gttctg-t
B D                   Ferret   cacaagcat-ctat---t-agtcatt---gttctg-t
B D                     Panda  cacaagtgt-ctat---t-agtcatt---gttctg-t
               Pacific walrus  cacaaccat-ctat---t-agtcatt---gttctg-t
                 Weddell seal  cacaagcat-ctat---t-agtcatt---gttctg-t
             Black flying-fox  aacagacat-gtaa---gttatc------attctg-t
B D                   Megabat  aacagacat-gtaa---gttatc------attctg-t
                Big brown bat  aacaagcac-ggat---g-aggc------atgctg-t
         David's myotis (bat)  agcaagcgt-ggat---g-agcc------gttctg-t
B D                  Microbat  agcaagcat-ggat---g-agcc------attctg-t
B D                  Hedgehog  ag--------ttat---t-agtcatc---cgtctg-c
              Star-nosed mole  agcaagtgt-ttat---t-aactcat---gttctg-t
B D                  Elephant  aacaagtgc-ttag---t-aaccctc---gttcta--
          Cape elephant shrew  cataagtac-tta-----------------ctctg--
B D                   Manatee  atcgagtac-ttag---t-agcccgc---gttctg--
             Cape golden mole  aacaa-tac-atag---t-agtcctc---gttctg--
B D                    Tenrec  ----------------------------------g--
B D                 Armadillo  agtaagcat-ttgt---t-tgccc------ttctg--
B D                     Shrew  =====================================
                 Spotted gar  -------------------------------------
B D             X. tropicalis  =====================================
B D                    Lizard  =====================================
  D    Spiny softshell turtle  =====================================
  D  Chinese softshell turtle  =====================================
  D            Painted turtle  =====================================
  D           Green seaturtle  =====================================
B D                    Turkey  =====================================
          Tibetan ground jay  =====================================
B D               Zebra finch  =====================================
B D       Medium ground finch  =====================================
  D    White-throated sparrow  =====================================
  D       Collared flycatcher  =====================================
  D          Peregrine falcon  =====================================
  D              Saker falcon  =====================================
  D               Rock pigeon  =====================================
B D                  Platypus  =====================================
B D        American alligator  =====================================
B D                   Opossum  =====================================
B D           Tasmanian devil  =====================================
                    Aardvark  =====================================

Inserts between block 18 and 19 in window
B D                 Elephant 1bp
         Cape elephant shrew 1bp
B D                  Manatee 1bp
            Cape golden mole 4bp
B D                   Tenrec 4bp
B D                Armadillo 1bp

Alignment block 19 of 414 in window, 60915078 - 60915146, 69 bps 
B D                     Human  ac-----t-aggcg-c--------------------tggggattcc-a------------acatg----t
B D                     Chimp  ac-----t-aggcg-c--------------------tggggattcc-a------------acatg----t
B D                   Gorilla  ac-----t-aggcg-c--------------------tggagattcc-a------------acatg----t
B D                 Orangutan  ac-----t-aggcg-c--------------------tggggattcc-a------------agatg----t
B D                    Gibbon  ac-----t-aggcg-c--------------------tggggattcc-a------------agatg----t
B D                    Rhesus  ac-----t-aggcg-c--------------------tcgggattcc-a------------agatg----t
B D       Crab-eating macaque  ac-----t-aggcg-c--------------------tcgggattcc-a------------agatg----t
B D                    Baboon  ac-----t-aggcg-c--------------------tcgggattcc-a------------agatg----t
B D              Green monkey  ac-----t-aggcg-c--------------------tcgggattcc-a------------agatg----t
B D                  Marmoset  cc-----t-aagca-c--------------------tggggattcc-a------------agatg----t
B D           Squirrel monkey  ac-----t-aggcg-c--------------------tggggattcc-a------------agatg----t
B D                  Bushbaby  gc-----t-actct-t--------------------tggggattcc-aaggaaag-at--agatgt---t
           Chinese tree shrew  gc-----t-aggtg-c--------------------tgggaattcc-aagaaaag-tt--agatg----c
B D                  Squirrel  gc-----t-aagca-c--------------------tggggattcc-aagaaaag-tt--agatg----t
       Lesser Egyptian jerboa  gc-----t-cagcg-c--------------------tggagattct-aagaaaag-tt--agaag----t
                 Prairie vole  at-----g-aggtg-c--------------------tggtgatccc-aag-aaag-tt--a-gtg----t
B D           Chinese hamster  gt-----t-aggtg-c--------------------tgaggtttcc-gagaaaag-tt--a-atg----t
               Golden hamster  gt-----t-aggtg-c--------------------tgaggtttcc-gagaaaag-tt--c-acg----t
B D                     Mouse  gc-----t-aggtg-c--------------------tggggattcc-aagaaaag-tt--a-atg----t
B D                       Rat  gc-----t-aggtg-t--------------------tggggattcc-aagaaaag-tt--a-atg----t
B D            Naked mole-rat  cc-----c-tgg-g-c--------------------tgaggattct-aaggaaag-tc--atggg----t
B D                Guinea pig  tctgtgtg-aggcg-c--------------------tggggactgc-aagcagag-tt--aggcg----t
                   Chinchilla  tt-----g-tggta-c--------------------tggggatggc-aggaagag-tt--aggca----t
             Brush-tailed rat  tc-----g-cggtg-t--------------------tggggattgc-aagaaaag-tt--agttacaggt
B D                    Rabbit  gc-----t-gggcg-c--------------------tggggattgc-aagaagag-tt--agctg----t
B D                      Pika  gt-----t-aggcg-c--------------------tgggcgttgc-aagagaag-tg--agctg----t
B D                       Pig  gc-----t-aggcg-c--------------------cggggattcc-aagacaag-tt--agctg----t
B D                    Alpaca  gc-----t-aggcg-c--------------------tggggcttcc-aaaaaaag-tt--agctg----t
               Bactrian camel  gc-----t-aggcg-c--------------------t-gggcttcc-aagaaaag-tt--agctg----t
B D                   Dolphin  gc-----t-aggcg-c--------------------tggagattcc-aagaaaag-tt------------
                 Killer whale  gc-----t-aggcg-c--------------------tggagattac-aagaaaag-tt------------
             Tibetan antelope  gc-----t-aggcg-c--------------------tggggattcc-aaggaagg-tt--agctg----t
B D                       Cow  gc-----t-aggca-c--------------------tgggaattcc-aaggaagg-tt--agcta----t
B D                     Sheep  gc-----t-aga-g-c--------------------tggggattcc-aaggaagg-tt--agctg----t
                Domestic goat  gc-----t-aggcg-c--------------------tggggattcc-aaggaagg-tt--agctg----t
B D                     Horse  gc-----t-cggcg-c--------------------tggggattcc-aagaaaag-tt--a---g----a
B D          White rhinoceros  gc-----t-aggcg-c--------------------tggggattcc-aagaaaag-tt--ag-tg----t
B D                       Cat  gc-----t-aggca-c--------------------tggggattcc-aaaaaaa----------g----t
B D                       Dog  gc-----t-aggca-c--------------------tggggattcc-aaaaaaaa---------g----t
B D                   Ferret   gc-----t-aggca-c--------------------tgaggattccaaaaaaaag-tt------g----a
B D                     Panda  gc-----t-aggca-c--------------------tgaggattcc-aaaaaaag-tt------g----t
               Pacific walrus  gc-----t-aggca-g--------------------tgaggattcc-aaaaaaag-tt------g----t
                 Weddell seal  gc-----t-aggca-a--------------------tgaggattcc-aaaaaaag-tt------g----t
             Black flying-fox  gc-----t-aggtg-c--------------------tagagattcc--aaaaaaa-tt--agttg----t
B D                   Megabat  gc-----t-aggtg-c--------------------tagagattcc--aaaaaaa-tt--agttg----t
                Big brown bat  gc-----c-aggcg-c--------------------tggggagccc-gagaaaag-tt--ggttg----t
         David's myotis (bat)  gc-----c-aggcg-c--------------------tggggagccc-gagaaaag-tt--agctg----t
B D                  Microbat  gc-----c-aggcg-c--------------------tggggagccc-gagaaaag-tt--agttg----t
B D                  Hedgehog  cc-----t-gggcgcc--------------------cgggactccc-aagaaaaa-gttaaattg----t
              Star-nosed mole  ac-----t-aggtg-c--------------------tgggaattcc-aagaaaag-at--agttg-----
B D                  Elephant  gc-----t-agccc-cccccccccaaaagctagacagtggaattcc-aagataag-tt--agaca----g
          Cape elephant shrew  ac-----t-agttg-c---------------------ttgaatgcc-aaaatgaa-tt--agatg----g
B D                   Manatee  gc-----t-aggcg-c---------------------tggaattcc-aagataag-tt--agaag----g
             Cape golden mole  gc-----t-agggg-c---------------------tggaatttt-aaaatcag-ta--agatg----g
B D                    Tenrec  gc-----t-gggca-c---------------------tggaacgcc-aagataaattt--atgtg----g
                     Aardvark  ac-----taagcta-c---------------------tgtaattcc-aagataag-tt--agagg----g
B D                 Armadillo  gc-----c-agacg-t--------------------gggggattcc-acga--gg-tt--agatg----t
B D                     Shrew  ======================================================================
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================

                        Human  caagtct-aaccg---ggagtcgc-----t-----c--ggtctact-g-------------gggaaggca
                        Chimp  caagtct-aaccg---ggagtcgc-----t-----c--ggtctac--g-------------aggaaggca
                      Gorilla  caagtct-aaccg---ggagtcgc-----t-----c--ggtctact-g-------------gggaaggca
                    Orangutan  caagtct-aaccg---ggagtcgc-----t-----c--ggtctaat-g-------------gggaaggca
                       Gibbon  caagtct-aaccg---ggagtcgc-----t-----c--ggtctaat-g-------------gggaaggca
                       Rhesus  caagtct-aaccg---ggaggcgc-----t-----t--ggtgtaat-g-------------gggaaggca
          Crab-eating macaque  caagtct-aaccg---ggaggcgc-----t-----t--ggtgtaat-g-------------gggaaggca
                       Baboon  caagtct-aaccg---ggaggcgc-----t-----t--ggtgtaat-g-------------gggaaggca
                 Green monkey  caagtct-aaccg---ggaggcgc-----t-----t--ggtgtaat-g-------------gggaaggca
                     Marmoset  caaattt-aaccg---ggaggtgc-----t-----c--agtctaat-t-------------ggaaaggca
              Squirrel monkey  caaattt-aaccg---ggaggctc-----t-----c--agtctaat-t-------------ggaaaggca
                     Bushbaby  caagtcc-catca---ggagaccc-----t-----c--agtctaat-g-------------agagaagca
           Chinese tree shrew  gaagtct-gaccc---gga--tgc-----t-----c--agtctaat-a-------------ggggaggtg
                     Squirrel  caagcct-gactg---ggaggtgc-----t------------------------------------tgga
       Lesser Egyptian jerboa  caggtcg-gact-----gagaggc-----t------------------------------------tgaa
                 Prairie vole  caagttt-gact-----gagttgc-----t------------------------------------ggga
              Chinese hamster  caagtta-gact-----gagttgt-----t------------------------------------gcga
               Golden hamster  caagttg-gact-----gagttgc-----t------------------------------------ggga
                        Mouse  caagtta-gtctg---agagtcac-----t------------------------------------ggga
                          Rat  caagtta-gtctg---agagttgc-----t------------------------------------ggga
               Naked mole-rat  cgggcct-gcctg---ccaggtgc-----g------------------------------------ggta
                   Guinea pig  ccggcct-gccta---ccaggtgt-----g------------------------------------ggta
                   Chinchilla  cgggctt-gcctg---ccaggggc-----g------------------------------------ggta
             Brush-tailed rat  tgggttt-gctgg---ccaggtgg-----g------------------------------------ggta
                       Rabbit  caagtct-g-------ggaggtgc-----t------------------------------------cagt
                         Pika  gaggtct-gcct----cgaggcgc-----t------------------------------------cctg
                          Pig  caagtct-gccg----ggagatgc-----t-----caaagtctaat-g-------------ggggaggca
                       Alpaca  gaagtct-gaagg---ggaggtac-----t-----caaag--taat-g-------------gcggaagca
               Bactrian camel  gaagtct-gaaggggaggaggtac-----t-----caaag--taat-g-------------gcggaagca
                      Dolphin  -aagtct-gacga---ggaggtgc-----t-----caaagtctaat-g-------------ggggagcca
                 Killer whale  -aagcct-gacga---ggaggtgc-----t-----caaagtctaat-g-------------ggggagcca
             Tibetan antelope  caagtct-gaagg---ggaggtgt-----t-----caaagtctatt-g-------------gggaaggca
                          Cow  caagtgt-gaagg---ggaggtgc-----t-----caaagtctttt-g-------------gggaaggca
                        Sheep  caagtct-gaagg---ggaggtgt-----t-----caaagtctatt-g-------------gggaaggca
                Domestic goat  caagtct-gaagg---ggaggtgt-----t-----caaagtctatt-g-------------gggaaggca
                        Horse  caaactg--acca---gcaggtgt-----t-----caaagtctgat-g-------------gagaaggca
             White rhinoceros  cagccgg--acca---gcaggtgc-----t-----c--agtctcat-g-------------gaggaggca
                          Cat  gaagttc--aacc---ggaggcgc-----g-----ggaagtctaat-g-------------ggggaggcc
                          Dog  taagtct--aacc---ggaggcgc-----t-----caaagtctgat-g-------------tgggaggct
                      Ferret   caagtct--aacc---ggaggcgc-----t-----caaagtctcctgg-------------ggggaggct
                        Panda  caaatct--aacc---ggaggcgc-----t-----caaagtctaat-g-------------ggggaggct
               Pacific walrus  caagtct--gacc---ggaggctg-----t-----caaaggctaat-g-------------gaggaggct
                 Weddell seal  caagtct--aacc---ggaggcgg-----t-----caaagtctaat-g-------------ggggaggct
             Black flying-fox  caattct-gaccg---ggaggtgc-----t-----caaagtctaat-a-------------ggggatgca
                      Megabat  cagttct-gaccg---ggaggtgc-----t-----caaagtctaat-a-------------ggggaggca
                Big brown bat  ggggtctggacta---gggggtgc-----t-----cggagcctga--c-------------ggggaggca
         David's myotis (bat)  caagtcgggacca---ggaggtgc-----t-----caaagcctaa--a-------------ggggaggca
                     Microbat  caggtcgggacca---ggaggtgc-----t-----caaagcctaa--a-------------ggggaggca
                     Hedgehog  -agatct---------gggggaactactgc-----ctcagttttga-ttggggacgaggaggaggaggaa
              Star-nosed mole  ----tcc---------agggtgat-----c-----ccaggtgttaa-gcagtgtc------cagaaggca
                     Elephant  cacatct-gacca---ggaggtgc-----t-----taaagtctaat-a-------------ggggagaca
          Cape elephant shrew  taggtct-cacca---ggaggtga-----tttaaataaatccta---a-------------gggcagact
                      Manatee  caagtct-g----------ggtgc-----t-----taaaggctaat-g-------------gaggagaca
             Cape golden mole  caagtct-gg---------------------------------ccc-a-------------gaggagaca
                       Tenrec  caagtgt-agctc---ga-agtgc-----c-----taagatctcct-g-------------ggggcggca
                     Aardvark  caggtct-gagcg---ga-ggtga-----t-----taaagtctaat-g-------------ggtaagaca
                    Armadillo  gaagtct-gacgg---ga-gatgc-----t-----gaaattctaaa-g-------------tgggagaca
                        Shrew  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================

                        Human  g-gt
                        Chimp  g-gt
                      Gorilla  g-gt
                    Orangutan  g-gt
                       Gibbon  g-gt
                       Rhesus  g-gt
          Crab-eating macaque  g-gt
                       Baboon  g-gt
                 Green monkey  g-gt
                     Marmoset  g-gt
              Squirrel monkey  g-gt
                     Bushbaby  g-gc
           Chinese tree shrew  g-g-
                     Squirrel  g-gc
       Lesser Egyptian jerboa  g-gc
                 Prairie vole  g-gc
              Chinese hamster  g-gt
               Golden hamster  g-gc
                        Mouse  g-gc
                          Rat  g-gc
               Naked mole-rat  ----
                   Guinea pig  g-tc
                   Chinchilla  g-tc
             Brush-tailed rat  g-tc
                       Rabbit  g-cc
                         Pika  a-gc
                          Pig  g-tc
                       Alpaca  g-gc
               Bactrian camel  g-gc
                      Dolphin  g-gc
                 Killer whale  g-gc
             Tibetan antelope  g-gc
                          Cow  g-gc
                        Sheep  g-gc
                Domestic goat  g-gc
                        Horse  g-ac
             White rhinoceros  g-gc
                          Cat  g-gc
                          Dog  gagc
                      Ferret   g-gc
                        Panda  g-gc
               Pacific walrus  g-gc
                 Weddell seal  c-gc
             Black flying-fox  g-gc
                      Megabat  g-gc
                Big brown bat  g-gc
         David's myotis (bat)  g-gc
                     Microbat  g-gc
                     Hedgehog  g-g-
              Star-nosed mole  g-g-
                     Elephant  g-gt
          Cape elephant shrew  g-gt
                      Manatee  g-gt
             Cape golden mole  g-gt
                       Tenrec  g-gt
                     Aardvark  g-gt
                    Armadillo  g-gc
                        Shrew  ====
                  Spotted gar  ----
                X. tropicalis  ====
                       Lizard  ====
       Spiny softshell turtle  ====
     Chinese softshell turtle  ====
               Painted turtle  ====
              Green seaturtle  ====
                       Turkey  ====
           Tibetan ground jay  ====
                  Zebra finch  ====
          Medium ground finch  ====
       White-throated sparrow  ====
          Collared flycatcher  ====
             Peregrine falcon  ====
                 Saker falcon  ====
                  Rock pigeon  ====
                     Platypus  ====
           American alligator  ====
                      Opossum  ====
              Tasmanian devil  ====

Inserts between block 19 and 20 in window
B D                 Squirrel 6bp
      Lesser Egyptian jerboa 5bp
                Prairie vole 1bp
B D          Chinese hamster 1bp
              Golden hamster 1bp
B D                    Mouse 1bp
B D                      Rat 1bp
B D               Guinea pig 3bp
                  Chinchilla 3bp
            Brush-tailed rat 3bp
B D                   Rabbit 1bp
B D                     Pika 1bp

Alignment block 20 of 414 in window, 60915147 - 60915156, 10 bps 
B D                     Human  tg-ataaa-c-tg
B D                   Gorilla  tg-ataaa-c-tg
B D                 Orangutan  tg-ataaa-c-tg
B D                    Gibbon  tg-ataaa-c-tg
B D                    Rhesus  tg-ataaa-c-tg
B D       Crab-eating macaque  tg-ataaa-c-tg
B D                    Baboon  tg-ataaa-c-tg
B D              Green monkey  tg-ataaa-c-tg
B D                  Marmoset  tg-ataag-c-tg
B D           Squirrel monkey  tg-ataag-c-tg
B D                  Bushbaby  tg-acaaa-c-cg
           Chinese tree shrew  gg-ataaa-t-tg
B D                  Squirrel  ct-acata-c-tg
       Lesser Egyptian jerboa  ca-aggca-c-tt
B D                Guinea pig  gg-atgca-t-tg
                   Chinchilla  gg-ataca-c-cg
             Brush-tailed rat  ga-ataca-t-tg
B D                    Rabbit  ---acaaa-c-tg
B D                      Pika  ---acaca-c-cg
B D                       Pig  at-agaaa-c-tg
B D                    Alpaca  at-ataaa-c-tg
               Bactrian camel  at-ataaa-c-tg
B D                   Dolphin  at-agaaa-c-tg
                 Killer whale  at-agaaa-c-tg
             Tibetan antelope  at-aaaaa-c-tg
B D                       Cow  at-aaaaa-c-tg
B D                     Sheep  at-aaaaa-c-tg
                Domestic goat  at-aaaag-c-tg
B D                     Horse  atgataaa-c-gg
B D          White rhinoceros  at-ataaa-----
B D                       Cat  at-gtaaacc-tg
B D                       Dog  ct-aaaaa-c-tg
B D                   Ferret   ct-ataaa-c-tg
B D                     Panda  ct-ataaa-c-tg
               Pacific walrus  ct-ataaa-c-tg
                 Weddell seal  ct-ataaa-c-tg
             Black flying-fox  at-ataaa-c-tg
B D                   Megabat  at-ataaa-c-tg
                Big brown bat  gt-ggaat-c-cg
         David's myotis (bat)  gt-ttagc-c-cg
B D                  Microbat  gt-ttaac-c-tg
B D                  Hedgehog  gg-ggaag-caag
              Star-nosed mole  gt-ataaa-c-ag
B D                  Elephant  gt-aaaaa-c-tg
          Cape elephant shrew  at-ataaa-c-tg
B D                   Manatee  gt-ataaa-c-tg
             Cape golden mole  gt-g---------
B D                    Tenrec  gt-gcaa------
                     Aardvark  at-ataaa-t-tg
B D                 Armadillo  at-ata-------
B D                     Shrew  =============
B D                     Mouse  =============
                Prairie vole  =============
B D                       Rat  =============
B D           Chinese hamster  =============
              Golden hamster  =============
B D            Naked mole-rat  -------------
                 Spotted gar  -------------
B D             X. tropicalis  =============
B D                    Lizard  =============
  D    Spiny softshell turtle  =============
  D  Chinese softshell turtle  =============
  D            Painted turtle  =============
  D           Green seaturtle  =============
B D                    Turkey  =============
          Tibetan ground jay  =============
B D               Zebra finch  =============
B D       Medium ground finch  =============
  D    White-throated sparrow  =============
  D       Collared flycatcher  =============
  D          Peregrine falcon  =============
  D              Saker falcon  =============
  D               Rock pigeon  =============
B D                  Platypus  =============
B D        American alligator  =============
B D                   Opossum  =============
B D           Tasmanian devil  =============
B D                     Chimp  NNNNNNNNNNNNN

Inserts between block 20 and 21 in window
               Big brown bat 138bp

Alignment block 21 of 414 in window, 60915157 - 60915176, 20 bps 
B D                     Human  ctaaat------------tatgctacgat-ata
B D                   Gorilla  ctaaat------------tatgctacgat-ata
B D                 Orangutan  ctaaat------------tatgctacgat-ata
B D                    Gibbon  ctaaat------------tatgctacgat-ata
B D                    Rhesus  ctaaat------------tatgctacgat-ata
B D       Crab-eating macaque  ctaaat------------tatgctacgat-ata
B D                    Baboon  ctaaat------------tatgctacgat-ata
B D              Green monkey  ctaaat------------tatgctacgat-ata
B D                  Marmoset  ccaaat------------tatgctagtat-ata
B D           Squirrel monkey  ctaaat------------tatgctaggat-ata
B D                  Bushbaby  ctaatg------------tagtgagtggt-ata
           Chinese tree shrew  ctacag------------tatgctacaat-gta
B D                  Squirrel  caa-gc------------gatgctacaac-at-
       Lesser Egyptian jerboa  ca--------------------ctgcagt-g--
B D            Naked mole-rat  -------------------------------c-
B D                Guinea pig  ccacat------------gctggcacaac-tca
                   Chinchilla  ccacgt------------gctggcacggt-gc-
             Brush-tailed rat  ctacat------------gctggtacaat-gc-
B D                    Rabbit  ctaaat------------tgtgctacgcc-ata
B D                      Pika  ctcagt------------gttactaaggt-gta
B D                       Pig  ctaaat------------tatgctactag-gca
B D                    Alpaca  ttaaac------------tatgcgacagt-gta
               Bactrian camel  ctaaat------------tatgcgacagt-gta
B D                   Dolphin  gtaaat------------gatgctacaat-gca
                 Killer whale  gtaaat------------gatgctacaat-gca
             Tibetan antelope  ctaaat------------tatgcta-agt-gca
B D                       Cow  ctaaat------------tatgctacagt-gca
B D                     Sheep  ctaaat------------tatgcta-agt-gca
                Domestic goat  ctaaat------------tatgcta-agt-gca
B D                     Horse  ctaaat------------gatgccacaat-gta
B D          White rhinoceros  ctaact------------aatgctacatt-gta
B D                       Cat  ctgaat--------tatgtatgctacaat-gta
B D                       Dog  ctaaat------------tatgctacagt-gca
B D                   Ferret   ctagat------------tatgctacaaa-gta
B D                     Panda  ctaaat------------tatgctacaat-gta
               Pacific walrus  ctaaat------------taggctacaat-gta
                 Weddell seal  ctaaat------------tatgctacaat-gta
             Black flying-fox  cttaat------------tctgctacact-gta
B D                   Megabat  cttaat------------tctgctacact-gta
         David's myotis (bat)  -gt-aa------------cccgctgcagt-gtg
B D                  Microbat  -ttaaa------------cccgctgcagt-gta
B D                  Hedgehog  ctaatagaaatgctcagtgacactactgt-gta
              Star-nosed mole  ctaatg------------tatgctacagtctta
B D                  Elephant  ctaaat------------ta-gctacagt-gta
          Cape elephant shrew  ctaaat------------cgtgctatagt-gta
B D                   Manatee  ctaaat------------ta-ggtacaat-gta
             Cape golden mole  ctaaat------------gatgctataat-gta
B D                    Tenrec  ctacct------------gatgctacaat-gta
                     Aardvark  ctaaat------------gatgctgcaat-gta
B D                 Armadillo  -taaaa------------ca-gctacaat-gtg
B D                     Shrew  =================================
B D                     Mouse  =================================
                Prairie vole  =================================
B D                       Rat  =================================
B D           Chinese hamster  =================================
              Golden hamster  =================================
               Big brown bat  =================================
                 Spotted gar  ---------------------------------
B D             X. tropicalis  =================================
B D                    Lizard  =================================
  D    Spiny softshell turtle  =================================
  D  Chinese softshell turtle  =================================
  D            Painted turtle  =================================
  D           Green seaturtle  =================================
B D                    Turkey  =================================
          Tibetan ground jay  =================================
B D               Zebra finch  =================================
B D       Medium ground finch  =================================
  D    White-throated sparrow  =================================
  D       Collared flycatcher  =================================
  D          Peregrine falcon  =================================
  D              Saker falcon  =================================
  D               Rock pigeon  =================================
B D                  Platypus  =================================
B D        American alligator  =================================
B D                   Opossum  =================================
B D           Tasmanian devil  =================================
B D                     Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 21 and 22 in window
B D                 Elephant 329bp
         Cape elephant shrew 8bp
B D                  Manatee 314bp
            Cape golden mole 5bp
B D                   Tenrec 8bp
                    Aardvark 16bp
B D                Armadillo 12bp

Alignment block 22 of 414 in window, 60915177 - 60915196, 20 bps 
B D                     Human  -----------tagtcagt--gg---------t---------aatgtgt---------------gt
B D                   Gorilla  -----------tagtcagt--gg---------t---------aatgtgt---------------gt
B D                 Orangutan  -----------tagtcagt--gg---------t---------aatgtgt---------------gt
B D                    Gibbon  -----------tagtcagt--gg---------t---------aatgtgt---------------gt
B D                    Rhesus  -----------tagtcagt--gg---------t---------aatgtgt---------------gt
B D       Crab-eating macaque  -----------tagtcagt--gg---------t---------aatgtgt---------------gt
B D                    Baboon  -----------taatcagt--gg---------t---------aatgtgt---------------gt
B D              Green monkey  -----------tagtcagt--gg---------t---------aatgtgt---------------gt
B D                  Marmoset  -----------tagtcagt--gg---------t---------aa----------------------
B D           Squirrel monkey  -----------tagtcagt--gg---------t---------aa----------------------
B D                  Bushbaby  -----------t------t--ag---------t---------aatttgt---------------gt
           Chinese tree shrew  -------------gtgagt--ag---------tataccgac-aatttgt---------------ga
B D                  Squirrel  ----------------agt--gggtgttatatt---------ggcagtt-----------------
       Lesser Egyptian jerboa  ----------------agt--gg----tgtatt---------ggcaagt-----------------
                 Prairie vole  -----------------gt--gg-------------------aacaaac-----------------
B D           Chinese hamster  -----------------at--gg-------------------cacaaat-----------------
               Golden hamster  -----------------gt--gg-------------------cacaaac-----------------
B D                     Mouse  -----------------gt--gg-------------------gacaaac-----------------
B D                       Rat  -----------------gt--gg-------------------gacaaac-----------------
B D            Naked mole-rat  ----------------agt--gg-------------------cacacgtgt-------------ag
B D                Guinea pig  -------------gtgagt--gg-------------------cacatgtgt-------------gg
                   Chinchilla  ----------------agt--ga-------------------cacatgtgt-------------gg
             Brush-tailed rat  ----------------agt--gg-------------------cacatgtgc-------------gg
B D                    Rabbit  -------------gtgagt--gt-------------------g---------------------tt
B D                      Pika  -------------gcagct--gt-------------------gagcggcactccggcaggttgagt
B D                       Pig  -------------gtaaat--gg---------tatattgac-agtttgt---------------gt
B D                    Alpaca  -------------ataaga--ga---------tatcttggc-aattcgt---------------g-
               Bactrian camel  -------------ataaga--ga---------tatcttggc-aatttgt---------------gt
B D                   Dolphin  -------------gtgagt--gg---------tatattggc-aatttgt---------------gt
                 Killer whale  -------------gtgagt--gg---------tatattggc-aatttgt---------------gt
             Tibetan antelope  -------------atgagt--gg---------taaattggc-aatttgt---------------gg
B D                       Cow  -------------atgagt--gg---------tatattggc-aatttgt---------------gg
B D                     Sheep  -------------atgagt--gg---------taaattggc-aatttgt---------------gg
                Domestic goat  -------------gtgagt--gg---------taaattggc-aatttgt---------------gg
B D                     Horse  -------------atgagt--gg---------tgtgttggc-aatctgt---------------g-
B D          White rhinoceros  -------------atgagttagg---------tatattggc-aatttgt---------------gt
B D                       Cat  -------------atgagc--gg---------tgtattggc-agtttgt---------------ga
B D                       Dog  -------------atgagt--gg---------tgtgttggc-ggtctgt---------------gt
B D                   Ferret   -------------atgagt--gg---------tgtattggc-agtctgt---------------gt
B D                     Panda  -------------atgagt--gc---------tgtattggc-agtctgt---------------gt
               Pacific walrus  -------------atgagt--gg---------tatattgg-----ctgt---------------gt
                 Weddell seal  -------------atgagt--gg---------tgtattggc-tgtctgt---------------gt
             Black flying-fox  -------------atgagt--gg---------tatattggc-aatttgc---------------ga
B D                   Megabat  -------------atgagt--ga---------tatattggc-aatttgc---------------ga
         David's myotis (bat)  -------------gtgggt--ag---------tgtatt-----gttggt---------------gt
B D                  Microbat  -------------gtgggt--ag---------tagattg---agtttgt---------------gt
B D                  Hedgehog  -------------aaagca--ag---------tgttttggc-gattcgt---------------gc
              Star-nosed mole  -------------aacggt--ga---------cttattggcagttttgt---------------gc
          Cape elephant shrew  tt--acattgacaatttga--gt-------------------------------------------
             Cape golden mole  tttcatattagcagttgag--gg-------------------------------------------
B D                    Tenrec  ttg-actttggcagaggggt-gg-------------------------------------------
                     Aardvark  -----------cagtttga--gg-------------------------------------------
B D                 Armadillo  -------ttgacaattggg--gg-------------------------------------------
B D                     Shrew  ==================================================================
               Big brown bat  ==================================================================
B D                   Manatee  ==================================================================
B D                  Elephant  ==================================================================
                 Spotted gar  ------------------------------------------------------------------
B D             X. tropicalis  ==================================================================
B D                    Lizard  ==================================================================
  D    Spiny softshell turtle  ==================================================================
  D  Chinese softshell turtle  ==================================================================
  D            Painted turtle  ==================================================================
  D           Green seaturtle  ==================================================================
B D                    Turkey  ==================================================================
          Tibetan ground jay  ==================================================================
B D               Zebra finch  ==================================================================
B D       Medium ground finch  ==================================================================
  D    White-throated sparrow  ==================================================================
  D       Collared flycatcher  ==================================================================
  D          Peregrine falcon  ==================================================================
  D              Saker falcon  ==================================================================
  D               Rock pigeon  ==================================================================
B D                  Platypus  ==================================================================
B D        American alligator  ==================================================================
B D                   Opossum  ==================================================================
B D           Tasmanian devil  ==================================================================
B D                     Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 22 and 23 in window
         Cape elephant shrew 6bp
            Cape golden mole 9bp
B D                   Tenrec 9bp
                    Aardvark 10bp
B D                Armadillo 17bp

Alignment block 23 of 414 in window, 60915197 - 60915200, 4 bps 
B D                     Human  gctg
B D                   Gorilla  gctg
B D                 Orangutan  gctg
B D                    Gibbon  gctg
B D                    Rhesus  gctg
B D       Crab-eating macaque  gctg
B D                    Baboon  gctg
B D              Green monkey  gctg
B D                  Bushbaby  gatg
           Chinese tree shrew  gctg
B D            Naked mole-rat  gctg
B D                Guinea pig  gctg
                   Chinchilla  gctg
             Brush-tailed rat  gctg
B D                    Rabbit  gctg
B D                      Pika  gctg
B D                       Pig  actg
               Bactrian camel  actg
B D                   Dolphin  actg
                 Killer whale  actg
             Tibetan antelope  gcta
B D                       Cow  gcta
B D                     Sheep  gcta
                Domestic goat  gcta
B D                     Horse  -ctg
B D          White rhinoceros  actg
B D                       Cat  acgg
B D                       Dog  accg
B D                   Ferret   gctg
B D                     Panda  actg
               Pacific walrus  actg
                 Weddell seal  ac--
             Black flying-fox  actg
B D                   Megabat  actg
         David's myotis (bat)  cctg
B D                  Microbat  actg
B D                  Hedgehog  ccc-
              Star-nosed mole  cctg
          Cape elephant shrew  gtgg
B D                   Manatee  gctg
             Cape golden mole  actg
B D                    Tenrec  gctg
                     Aardvark  gctg
B D                 Armadillo  gcca
B D                     Shrew  ====
B D                     Mouse  ----
                Prairie vole  ----
B D                       Rat  ----
B D           Chinese hamster  ----
              Golden hamster  ----
      Lesser Egyptian jerboa  ----
B D                  Marmoset  ----
B D           Squirrel monkey  ----
               Big brown bat  ====
B D                  Elephant  ====
B D                    Alpaca  ----
B D                  Squirrel  ----
                 Spotted gar  ----
B D             X. tropicalis  ====
B D                    Lizard  ====
  D    Spiny softshell turtle  ====
  D  Chinese softshell turtle  ====
  D            Painted turtle  ====
  D           Green seaturtle  ====
B D                    Turkey  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
B D       Medium ground finch  ====
  D    White-throated sparrow  ====
  D       Collared flycatcher  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
  D               Rock pigeon  ====
B D                  Platypus  ====
B D        American alligator  ====
B D                   Opossum  ====
B D           Tasmanian devil  ====
B D                     Chimp  NNNN

Inserts between block 23 and 24 in window
         Cape elephant shrew 4bp

Alignment block 24 of 414 in window, 60915201 - 60915234, 34 bps 
B D                     Human  c-a-------------------------------acattt------------------------------
B D                   Gorilla  c-a-------------------------------acattt------------------------------
B D                 Orangutan  c-a-------------------------------acattt------------------------------
B D                    Gibbon  c-a-------------------------------acattt------------------------------
B D                    Rhesus  c-a-------------------------------acattt------------------------------
B D       Crab-eating macaque  c-a-------------------------------acattt------------------------------
B D                    Baboon  c-a-------------------------------acattt------------------------------
B D              Green monkey  c-a-------------------------------acattt------------------------------
B D                  Marmoset  ----------------------------------------------------------------------
B D           Squirrel monkey  ----------------------------------------------------------------------
B D                  Bushbaby  caa-------------------------------atattt------------------------------
           Chinese tree shrew  c-a-------------------------------acattt------------------------------
B D                  Squirrel  ----------------------------------------------------------------------
       Lesser Egyptian jerboa  ----------------------------------------------------------------------
                 Prairie vole  ----------------------------------------------------------------------
B D           Chinese hamster  ----------------------------------------------------------------------
               Golden hamster  ----------------------------------------------------------------------
B D                     Mouse  ----------------------------------------------------------------------
B D                       Rat  ----------------------------------------------------------------------
B D            Naked mole-rat  a-g-------------------------------ac-ctt------------------------------
B D                Guinea pig  t-c-------------------------------ac-ctt------------------------------
                   Chinchilla  c-c-------------------------------ac-ctt------------------------------
             Brush-tailed rat  g-t-------------------------------gt-ctt------------------------------
B D                    Rabbit  c-g-------------------------------atgcct------------------------------
B D                      Pika  c-a-------------------------------acacct------------------------------
B D                       Pig  c-a-------------------------------atattc------------------------------
B D                    Alpaca  --------------------------------------tt------------------------------
               Bactrian camel  c-a-------------------------------atgctt------------------------------
B D                   Dolphin  c-a-------------------------------acgttc------------------------------
                 Killer whale  c-a-------------------------------acgttc------------------------------
             Tibetan antelope  c-a-------------------------------actttc------------------------------
B D                       Cow  c-a-------------------------------actttc------------------------------
B D                     Sheep  c-a-------------------------------actttc------------------------------
                Domestic goat  c-a-------------------------------actttc------------------------------
B D                     Horse  c-g-------------------------------atattg------------------------------
B D          White rhinoceros  c-a-------------------------------acgttt------------------------------
B D                       Cat  c-a-------------------------------acattc------------------------------
B D                       Dog  c-a-------------------------------acactt------------------------------
B D                   Ferret   c-a-------------------------------acattt------------------------------
B D                     Panda  c-a-------------------------------acattt------------------------------
               Pacific walrus  c-a-------------------------------acattt------------------------------
                 Weddell seal  ----------------------------------------------------------------------
             Black flying-fox  c-a-------------------------------acattt------------------------------
B D                   Megabat  c-a-------------------------------acattt------------------------------
         David's myotis (bat)  c-cccttcctttgctttgttttttctgttttctgttattt-----------------------------t
B D                  Microbat  c-acattcagt-----------------------acactttgctttgtcttttctattttctgttatttt
B D                  Hedgehog  c-c-------------------------------ccccc-------------------------------
              Star-nosed mole  c-a-------------------------------acatt-------------------------------
B D                  Elephant  --------------------------------caacattt------------------------------
          Cape elephant shrew  --------------------------------caacgttt------------------------------
B D                   Manatee  --------------------------------caacattt------------------------------
             Cape golden mole  --------------------------------taatattt------------------------------
B D                    Tenrec  --------------------------------caccattt------------------------------
                     Aardvark  --------------------------------caacactt------------------------------
B D                 Armadillo  --------------------------------caactctt------------------------------
B D                     Shrew  ======================================================================
               Big brown bat  ======================================================================
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                     Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  --------------------------ctatag-----at-gtt--ta-------g-----tt--------
                      Gorilla  --------------------------ctatag-----at-gtt--ta-------g-----tt--------
                    Orangutan  --------------------------ctatag-----at-gtt--ta-------g-----tt--------
                       Gibbon  --------------------------ctatag-----at-gtt--ta-------g-----tt--------
                       Rhesus  --------------------------ctatag-----at-gtt--ta-------g-----tt--------
          Crab-eating macaque  --------------------------ctatag-----at-gtt--ta-------g-----tt--------
                       Baboon  --------------------------ctatag-----at-gtt--ta-------g-----tt--------
                 Green monkey  --------------------------ctatag-----ct-gtt--ta-------g-----tt--------
                     Marmoset  ---------------------------------------------ta-------g-----tt--------
              Squirrel monkey  ---------------------------------------------ta-------g-----tt--------
                     Bushbaby  --------------------------ctatattttacat-gtt--tactaatatg-----tt--------
           Chinese tree shrew  --------------------------ctatag-----at---------------g-----tt--------
                     Squirrel  ----------------------------------------------g-------g-----tgccctgcaa
       Lesser Egyptian jerboa  ----------------------------------------------t-------gtgtgctg--------
                 Prairie vole  ----------------------------------------------c-------g-----tg--------
              Chinese hamster  ----------------------------------------------t-------g-----tg--------
               Golden hamster  ----------------------------------------------t-------g-----tg--------
                        Mouse  ----------------------------------------------t-------t-----tg--------
                          Rat  ----------------------------------------------t-------t-----tg--------
               Naked mole-rat  --------------------------tcacag-------------ca-------g-----tt--------
                   Guinea pig  --------------------------ctacc---------------t-------g-----tt--------
                   Chinchilla  --------------------------ctgtag-------------gg-------g-----tt--------
             Brush-tailed rat  --------------------------ctacag-------------gt-------g-----tt--------
                       Rabbit  --------------------------ctgtag-------------at-------g-----tt--------
                         Pika  --------------------------ctgtag--------------t-------g-----tt--------
                          Pig  --------------------------ct---------at-gtttacc-------a-----tt--------
                       Alpaca  --------------------------ctgtag-----at-gtttaca-------g---------------
               Bactrian camel  --------------------------ctgtag-----at-gtttaca-------g---------------
                      Dolphin  --------------------------ctatag-----at-gtttaca-------g-----tt--------
                 Killer whale  --------------------------ctatag-----at-gtttaca-------g-----tt--------
             Tibetan antelope  --------------------------ttatag-----at-gtttata-------g-----tt--------
                          Cow  --------------------------ctatag-----at-gtttata-------g-----tt--------
                        Sheep  --------------------------ctatag-----at-gtttata-------g-----tt--------
                Domestic goat  --------------------------ctatag-----at-gtttata-------g-----tt--------
                        Horse  --------------------------ctgtag-----at---------------g-----tt--------
             White rhinoceros  --------------------------ctatag-----at-gtttaca-------g-----tt--------
                          Cat  --------------------------ctactg-----ac-gcttaag-------g-----tt--------
                          Dog  --------------------------gggttg-----ac-ccttaag-------g-----tc--------
                      Ferret   --------------------------ctgttg-----ac-ccttaag-------g-----tc--------
                        Panda  --------------------------ctgttg-----ac-ccttaag-------g-----tc--------
               Pacific walrus  --------------------------ctgttg-----ac-ccttaag-------g-----tc--------
                 Weddell seal  -----------------------------ttg-----ac-ccttaag-------g-----tc--------
             Black flying-fox  --------------------------ctatag-----gt-atttaca-------a-----ta--------
                      Megabat  --------------------------ctatag-----gt-gtttaca-------a-----ta--------
         David's myotis (bat)  tcctctttgtgctgttcccgccacgcctctag-----gt-gtgcgca-------g-----tg--------
                     Microbat  ttctttctgtgctgtccctgccacgcctgtag-----gt-gtgcgca-------g-----tg--------
                     Hedgehog  --------------------------ccgcag-----cc-ttttgcg-----------------------
              Star-nosed mole  --------------------------ctatag-----gt-gtttac------------------------
                     Elephant  --------------------------cagtgg-----at-gtttaca-------g-----tt--------
          Cape elephant shrew  --------------------------tcctag-----atggcttgca-------g-----ct--------
                      Manatee  --------------------------ctgtgg-----at---------------g-----tt--------
             Cape golden mole  --------------------------ctgtag-----gt-gttggca-------g-----tt--------
                       Tenrec  --------------------------ctgcag-----gg-gctgacc-------c-----gg--------
                     Aardvark  --------------------------ctgtag-----at-ggtcagg-------g-----tt--------
                    Armadillo  --------------------------at-tgg-----at---------------g-----tt--------
                        Shrew  ======================================================================
                Big brown bat  ======================================================================
                  Spotted gar  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                       Lizard  ======================================================================
       Spiny softshell turtle  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
              Green seaturtle  ======================================================================
                       Turkey  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
          Collared flycatcher  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                     Platypus  ======================================================================
           American alligator  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                        Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  --------------tacaa-------agcgc
                      Gorilla  --------------tacaa-------agcgc
                    Orangutan  --------------tacaa-------agcgc
                       Gibbon  --------------tacaa-------agcgc
                       Rhesus  --------------tacaa-------agcgc
          Crab-eating macaque  --------------tacaa-------agcgc
                       Baboon  --------------tacaa-------agcgc
                 Green monkey  --------------tacaa-------agcgc
                     Marmoset  --------------tacaa-------aacgc
              Squirrel monkey  --------------cacaa-------agcgc
                     Bushbaby  --------------tacaa-------agtgc
           Chinese tree shrew  --------------tacaa-------agtgc
                     Squirrel  cattgtatagctttgacaa-------agtgc
       Lesser Egyptian jerboa  --------------aacat-------agtac
                 Prairie vole  --------------aacat-------ggtgc
              Chinese hamster  --------------aacag-------ggtgc
               Golden hamster  --------------aacag-------ggtgc
                        Mouse  --------------aacac-------agtgc
                          Rat  --------------aacac-------agtgc
               Naked mole-rat  --------------tacaa-------agtgt
                   Guinea pig  --------------tacaa-------agtgc
                   Chinchilla  --------------tacaa-------agtgc
             Brush-tailed rat  --------------tacag-------agcgc
                       Rabbit  --------------tccagttgaccaggtgc
                         Pika  --------------tccagtttagccagggt
                          Pig  --------------tacga-------agttc
                       Alpaca  --------------------------agttc
               Bactrian camel  --------------------------agttc
                      Dolphin  --------------tacaa-------agttc
                 Killer whale  --------------tacaa-------agttc
             Tibetan antelope  --------------tacaa-------agttc
                          Cow  --------------tacaa-------agttc
                        Sheep  --------------tacaa-------agttc
                Domestic goat  --------------tacaa-------agttc
                        Horse  --------------tacga-------agttc
             White rhinoceros  --------------tacag-------agttc
                          Cat  --------------tagaa-------agttc
                          Dog  --------------tacaa-------aactc
                      Ferret   --------------tacaa-------agct-
                        Panda  --------------tacaa-------agcgc
               Pacific walrus  --------------tacag-------agctc
                 Weddell seal  --------------tacaa-------agctc
             Black flying-fox  --------------tacaa-------agatc
                      Megabat  --------------tacaa-------agacc
         David's myotis (bat)  --------------ta-tg-------ag---
                     Microbat  --------------taccg-------ag---
                     Hedgehog  ----------------tag-------agtct
              Star-nosed mole  -----------------aa-------agttc
                     Elephant  --------------tacag-------agatc
          Cape elephant shrew  --------------tacag-------agctc
                      Manatee  --------------tacaa-------agttt
             Cape golden mole  --------------tacta-------agttc
                       Tenrec  --------------tgtga-------actct
                     Aardvark  --------------tacaa-------agttc
                    Armadillo  --------------tataa-------agttc
                        Shrew  ===============================
                Big brown bat  ===============================
                  Spotted gar  -------------------------------
                X. tropicalis  ===============================
                       Lizard  ===============================
       Spiny softshell turtle  ===============================
     Chinese softshell turtle  ===============================
               Painted turtle  ===============================
              Green seaturtle  ===============================
                       Turkey  ===============================
           Tibetan ground jay  ===============================
                  Zebra finch  ===============================
          Medium ground finch  ===============================
       White-throated sparrow  ===============================
          Collared flycatcher  ===============================
             Peregrine falcon  ===============================
                 Saker falcon  ===============================
                  Rock pigeon  ===============================
                     Platypus  ===============================
           American alligator  ===============================
                      Opossum  ===============================
              Tasmanian devil  ===============================
                        Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 24 and 25 in window
        David's myotis (bat) 3bp
B D                 Microbat 3bp

Alignment block 25 of 414 in window, 60915235 - 60915281, 47 bps 
B D                     Human  ttgctgcagaaatat-cttaac-tccttacagcaa-ctctt-------------------------ca--
B D                   Gorilla  ttgctgcacaaatat-cttaac-tccttacagcaa-ctctt-------------------------ca--
B D                 Orangutan  ttgctgcggaaatat-cttaac-tccttacagcaa-ctctt-------------------------ca--
B D                    Gibbon  ttgctgcagaaatat-cttaac-tccttacagcaa-ctctt-------------------------ca--
B D                    Rhesus  ttgctgaagaaatat-cttaac-tccttacagcaa-ctctt-------------------------ca--
B D       Crab-eating macaque  ttgctgaagaaatat-cttaac-tccttacagcaa-ctctt-------------------------ca--
B D                    Baboon  ttgctgaagaaatat-cttaac-tccttacagcaa-ctctt-------------------------ca--
B D              Green monkey  ttgctgcagaaatat-cttaac-tccttacagcaa-ctctt-------------------------ca--
B D                  Marmoset  ttgctgcagaaatat-cttaac-tccttgcagcta-ctctt-------------------------aa--
B D           Squirrel monkey  ttgctgcagaaatat-cttcac-tcattgcagcta-ctctt-------------------------aa--
B D                  Bushbaby  ttgcagcag---cat-cttaac-tcttggtagcaa-ctctt-------------------------aa--
           Chinese tree shrew  ttgc---agaaacat-cttaacttccttgcaacaa-ctctt-------------------------aa--
B D                  Squirrel  ttgc---agaaacgt-cttaac-tccttgcaacaa-ctctt-------------------------aa--
       Lesser Egyptian jerboa  ttgc---acaaacat-cttaac-tcttcttggcag-ctctt-------------------------ca--
                 Prairie vole  ttgc---acaaacgg-tttaat-ttctcaaagcca-ctctt-------------------------aa--
B D           Chinese hamster  ttgc---acaaagga-ttcaac-ttctcaaagcaa-ctctt-------------------------aa--
               Golden hamster  ttgc---acaaacga-ttcact-ttctcaaagcaa-ctctt-------------------------aa--
B D                     Mouse  ttgc---acaaatta-tctaac-ttcttgaagtaa-ctctt-------------------------aa--
B D                       Rat  ttgc---ccaaatta-tttaac-ttcttgaagcaa-ccctt-------------------------aa--
B D            Naked mole-rat  ttgc---agaaacat-cttgac-tc--tgcggcaa-cctgt-------------------------aa--
B D                Guinea pig  ttgt---agaaacat-cgtgac-tgcttgcagcaa-cccac-------------------------aa--
                   Chinchilla  ctgc---agaaacat-cgtgac-tccttgcagcaa-cctgc-------------------------aa--
             Brush-tailed rat  tggc---agaaacac-agtgac-tccttgca--------gc-------------------------aa--
B D                    Rabbit  ctgc---ggggacat-cttcac---cttgtagcaa-ttctt-------------------------gc--
B D                      Pika  gtgc--------------------------agcag-ttctt-------------------------gg--
B D                       Pig  ttgc---agaaacat--ttaac-tccttgcaatca-ctctt-------------------------aa--
B D                    Alpaca  ttgc---agaaacat-gttaac-tccttgcaataa-ctctt-------------------------aa--
               Bactrian camel  ttgc---agaaacat-gttaac-tccttgcaataa-ctctt-------------------------aa--
B D                   Dolphin  ttgc---agaaacat-gttaac-tccttgcggtaa-ctcat-------------------------aa--
                 Killer whale  ttgc---agaaacat-gttaac-tccttgcggtaa-ctcat-------------------------aa--
             Tibetan antelope  ttgt---agaaacat-gttaac-tacttgcattaa-ctctt-------------------------aa--
B D                       Cow  ttgt---agaaacat-gttaac-tacttgcattaa-ctctt-------------------------aa--
B D                     Sheep  ttgt---agaaacat-gttaac-tacttgcattaa-ctctt-------------------------aa--
                Domestic goat  ttgt---agaaacat-gttcac-tacttgcattaa-ctctt-------------------------aa--
B D                     Horse  tggc---agaaacat-gttaac-tcctggcagtaa-ctctt-------------------------aa--
B D          White rhinoceros  ttgc---agaaacgt-gttaac-ttcttgcaacga-ctttttgttttttttttttttttggtaacaaa--
B D                       Cat  tcgc---agaaacac-gt------------aataa-ttctt-------------------------aa--
B D                       Dog  ttgc---agaaacat-gt------------agtag-ttctt-------------------------aa--
B D                   Ferret   ttgc---agaaatcc-gc------------agtag-ttctt-------------------------aa--
B D                     Panda  ttgc---agaaacat-gt------------agtag-ttctt-------------------------aa--
               Pacific walrus  ttgc---agaaacgc-gt------------agtag-ttttt-------------------------aa--
                 Weddell seal  ttgc---agaaacgtagt------------agtag-ttctt-------------------------aa--
             Black flying-fox  ttac---agaaacgt-gttaac-tccttgcaataa-ctcta-------------------------aa--
B D                   Megabat  ttac---agaaatgt-gttaac-tccttgcaataa-ctcta-------------------------aa--
                Big brown bat  tcgc---agagccag-gccagc-tccttggggtaa-gtcct-------------------------gg--
         David's myotis (bat)  ctgc---agagccag-cttggc-tccctgcggtag-ctcgt-------------------------gg--
B D                  Microbat  ctgc---agagccag-gctccc-tccctgcagtaa-ctcgt-------------------------gg--
B D                  Hedgehog  ttgt---agaaacag-gtgaac-ttg-----atgg-ct--------------------------------
              Star-nosed mole  ttgt---agaaacat-gttagc-ctg--gcaatga-ctctt-------------------------ca--
B D                  Elephant  ttgc---agaaacat-cttaac-tccttgcaacaa-ctctc-------------------------ta--
          Cape elephant shrew  ttgg---ggaaacat-tttcac-tccttgcaacaatttctt-------------------------tt--
B D                   Manatee  ttac---ggaaacat-cttaac-tccttgtaacaa-ctctc-------------------------ta--
             Cape golden mole  ttgt---agaaacat-cttaac-tccttgcaaacaactctg-------------------------tt--
B D                    Tenrec  ttgt---aaacactt-ctcttg-tccaagtgaa-------------------------------------
                     Aardvark  ttac---agaaacat-cttaac-tctttgcaacaa---ctc-------------------------tg--
B D                 Armadillo  ttgc---agaaacat-cttaac-tctttgcaacaa-ccctt-------------------------taac
B D                     Shrew  ======================================================================
                 Spotted gar  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
B D                    Lizard  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                  Platypus  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                     Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ------cctgggt
                      Gorilla  ------cctggct
                    Orangutan  ------cctggct
                       Gibbon  ------cctggct
                       Rhesus  ------cccggct
          Crab-eating macaque  ------cccggct
                       Baboon  ------cccggct
                 Green monkey  ------cccagct
                     Marmoset  ------cctggct
              Squirrel monkey  ------cctggct
                     Bushbaby  ------cctggct
           Chinese tree shrew  ------accag-t
                     Squirrel  ------cctggtt
       Lesser Egyptian jerboa  ------cctagtt
                 Prairie vole  ------cccactt
              Chinese hamster  ------cccggtt
               Golden hamster  ------cccggtt
                        Mouse  ------cccagtt
                          Rat  ------cccagtt
               Naked mole-rat  ------cctggct
                   Guinea pig  ------cctggct
                   Chinchilla  ------cctggcc
             Brush-tailed rat  ------cctggct
                       Rabbit  ------cttgcct
                         Pika  ------ctcgtct
                          Pig  ------ctttgct
                       Alpaca  ------cctcgct
               Bactrian camel  ------cctcgct
                      Dolphin  ------ccttgct
                 Killer whale  ------ccttgct
             Tibetan antelope  ------cctcatt
                          Cow  ------cctcatt
                        Sheep  ------cctcatt
                Domestic goat  ------cctcatt
                        Horse  ------ccccgtt
             White rhinoceros  ------ctttatt
                          Cat  ------gcctgct
                          Dog  ------ctcggct
                      Ferret   ------ccctgct
                        Panda  ------ccttgct
               Pacific walrus  ------ccctgct
                 Weddell seal  ------ccctgct
             Black flying-fox  ------ccctgct
                      Megabat  ------ccctgct
                Big brown bat  -------cccgct
         David's myotis (bat)  ------ccccgct
                     Microbat  ------ccccgct
                     Hedgehog  ---------t---
              Star-nosed mole  ------cagc---
                     Elephant  -------------
          Cape elephant shrew  -------------
                      Manatee  -------------
             Cape golden mole  -------------
                       Tenrec  -------------
                     Aardvark  -------------
                    Armadillo  tgtgat-------
                        Shrew  =============
                  Spotted gar  -------------
                X. tropicalis  =============
                       Lizard  =============
       Spiny softshell turtle  =============
     Chinese softshell turtle  =============
               Painted turtle  =============
              Green seaturtle  =============
                       Turkey  =============
           Tibetan ground jay  =============
                  Zebra finch  =============
          Medium ground finch  =============
       White-throated sparrow  =============
          Collared flycatcher  =============
             Peregrine falcon  =============
                 Saker falcon  =============
                  Rock pigeon  =============
                     Platypus  =============
           American alligator  =============
                      Opossum  =============
              Tasmanian devil  =============
                        Chimp  NNNNNNNNNNNNN

Inserts between block 25 and 26 in window
B D         White rhinoceros 202bp
B D                    Panda 1bp
B D                 Hedgehog 1bp
             Star-nosed mole 1bp

Alignment block 26 of 414 in window, 60915282 - 60915332, 51 bps 
B D                     Human  tcactcccttttacgtttgaggagac---tgcaa----ctcaggcag----gttaag-taaca
B D                   Gorilla  tcactcccttttacgtttgaggagac---tgcaa----ctcaggcag----gttaag-taaca
B D                 Orangutan  tcactcccttttacgtttgaggagac---tgcaa----ctcaggcag----gttaag-taaca
B D                    Gibbon  tcactcccttttacgtttgaggagac---tgcaa----ctcaggcag----gttaag-taaca
B D                    Rhesus  tcactcacttttacgtttgaggagac---tgcaa----ctcaggcag----gttaag-taaca
B D       Crab-eating macaque  tcactcacttttacgtttgaggagac---tgcaa----ctcaggcag----gttaag-taaca
B D                    Baboon  tcactcacttttacgtttgaggagac---tgcaa----ctcaggcag----gttaag-taaca
B D              Green monkey  tcactcacttttacgtttgaggagac---tgcaa----ctcaggcag----gttaag-taaca
B D                  Marmoset  tcactcccttttacgtttgaggagac---tgcaa----ctcgggagg----gtgaaa-taaca
B D           Squirrel monkey  tcactcccttttacttttgaggagac---tgcaa----ctcagaagg----gtgaaa-taaca
B D                  Bushbaby  tcacccaattttgcatttgaggagaa---tgaag----cacagacag----gttaag-taata
           Chinese tree shrew  tcaccaggatttctgtt---ggagac---tgaag----ttcaga--------ttaag-taaca
B D                  Squirrel  ttaccctgctttacatttgaggagac---tgaaa----c-ctgatag----gttaag-taaca
       Lesser Egyptian jerboa  tccacaggttttatctttgaggagat---tgaaa----cgcggat------gttaag-aaaca
                 Prairie vole  tcaacaggatttacagtggaggagat---tgaaa----gtcagatag----gttaag-taaca
B D           Chinese hamster  tcaacagggtttacatttgaagagat---tgaaa----gtcagataggttagttaag-taaca
               Golden hamster  tcaacagaatttacatttgaggagac---tgaaa----atcagataggttagttaag-taaca
B D                     Mouse  tcaacagaacttacatttgaggagat---tgaat----ttcagatag----gttaag-taaca
B D                       Rat  tcaacagactttacatttgaggagat---tgaga----ctcagatag----gtgaag-taaca
B D            Naked mole-rat  tcaccccattttacatttgaggagac---tgaaa----ctc----ag----cttaag-taaca
B D                Guinea pig  tcacccggttttaaatttgagaagag---tgaaa----ctcagatag----gttaag-aagta
                   Chinchilla  tcaccccgttgtacatttgagaagac---tgaaa----ctcagatag----gtgaag-taaca
             Brush-tailed rat  tcacccagtattacgtttgagaaaag---tgaaa----ttcagg-ag----cttaag-taaca
B D                    Rabbit  gcgccccgttttacggtccaggcgtc---c----------cgggttg----tctaa--taaca
B D                      Pika  tcaccccgtttgacgtttgaggagtt---c----------tgggtta----tcttagttagca
B D                       Pig  ggtccccattttacattcgcagagac---tgaaa----ctctgatag----gttaaa-tacta
B D                    Alpaca  tgaccccgttttacattcgaggagac---gaaaa----ctcag--------gttaag-taata
               Bactrian camel  tgaccccgttttacattcgaggagac---gaaaa----ctcag--------gttaag-taata
B D                   Dolphin  taaccccattttacatttgaggagac---tgaaa----ct----tag----gttaag-tgata
                 Killer whale  taaccccattttacatttgaggagac---tgaaa----ctcagacag----gttaag-tgata
             Tibetan antelope  tgatcccattttagatttgaggagac---tgaaa----ctcagaca-----gttaag-taata
B D                       Cow  tgatcccattttagatttgaggagac---tgaaa----ctcagaca-----gttaag-taata
B D                     Sheep  tgatcccattttagatttgaggagac---tgaaa----ctcagaca-----gttaag-taata
                Domestic goat  tgatcccattttagatttgaggagac---tgaaa----ctcagaca-----gttaag-taata
B D                     Horse  taaccccgttttacatttgaggagcc---tgcaa----ctcag--------gttaag-taata
B D          White rhinoceros  taacctccttttacatttgaggagac---tgaaa----ctcag--------gttaag-tgata
B D                       Cat  taaccccatttgaca-ctgaggagac---tgaaa----ctcag--------gttaag-tcata
B D                       Dog  taaccccattttacg-tggaagaggt---tgaca----ttcag--------gttagg-taaca
B D                   Ferret   taaccccattttgca-ttgaggagat---tgaaa----ctcag--------attaag-taata
B D                     Panda  gaaccccattttgta-ctgaggagat---tgaaa----ctcag--------attaag-aacta
               Pacific walrus  taaccccattttgca-ttgaggagat---tgaaa----ctcag--------attaag-gaata
                 Weddell seal  taaccccattttgca-ttgaggagat---tgaaa----ctcag--------attaag-gaata
             Black flying-fox  taaccccattttacgtttgagaagat---tatac-------------------------aata
B D                   Megabat  taaccccattttacgtttgagaagat---tatac-------------------------agta
                Big brown bat  tacccccgttgtccattggaggagcc---tgggc----ctcag--------ataaag-tcaca
         David's myotis (bat)  taaccccggtgaacattggaggagac---tggac----ctcag--------ataaag-tcgta
B D                  Microbat  taaccccggtgaacattggaggagac---tggac----ctcag--------ctaaag-tcata
B D                  Hedgehog  caagt---------------ggagaa---tgaat----gtcaag-------gataag-tagtc
              Star-nosed mole  caacccc-----------taggagac---tgcag----ctga---------gacagg-ttggc
B D                  Elephant  -----------tccgtttgagaagac---tg----------------------taag-tagct
          Cape elephant shrew  -----------tacatttgaaaagac---tgaag----cttagattg----gttaag-tggac
B D                   Manatee  -----------tacatttgagaagac---tgaag----ctccgacaa----gttaag-tagct
             Cape golden mole  ---------------------aagacatttgaga-------agaccc----gttagg-cagct
B D                    Tenrec  ---------------------aagac---tgagggaagctcagacgg----gttaag-tagcc
                     Aardvark  -----------tatctttgggaaggc---tgaag----ctcagactg----gttaag-tagct
B D                 Armadillo  ggaggccattttacatttgaggagcc---tgaag----cccaaacag----gttaaa-tagct
B D                     Shrew  ===============================================================
                 Spotted gar  ---------------------------------------------------------------
B D             X. tropicalis  ===============================================================
B D                    Lizard  ===============================================================
  D    Spiny softshell turtle  ===============================================================
  D  Chinese softshell turtle  ===============================================================
  D            Painted turtle  ===============================================================
  D           Green seaturtle  ===============================================================
B D                    Turkey  ===============================================================
          Tibetan ground jay  ===============================================================
B D               Zebra finch  ===============================================================
B D       Medium ground finch  ===============================================================
  D    White-throated sparrow  ===============================================================
  D       Collared flycatcher  ===============================================================
  D          Peregrine falcon  ===============================================================
  D              Saker falcon  ===============================================================
  D               Rock pigeon  ===============================================================
B D                  Platypus  ===============================================================
B D        American alligator  ===============================================================
B D                   Opossum  ===============================================================