Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 129 in window, 33893201 - 33893262, 62 bps 
B D                     Human  gggttggagc-t----gg--------------cag-----------------------------------
B D                     Chimp  gggttggagc-t----gg--------------cag-----------------------------------
B D                   Gorilla  gggttggagc-t----gg--------------cag-----------------------------------
B D                 Orangutan  gggttggagc-t----gg--------------cgg-----------------------------------
B D                    Rhesus  gggctggggc-t----gg--------------cag-----------------------------------
B D       Crab-eating macaque  gggctggggc-t----gg--------------cag-----------------------------------
B D                    Baboon  gggctggggc-t----gg--------------cag-----------------------------------
B D              Green monkey  gggctggggc-t----gg--------------cag-----------------------------------
B D                  Marmoset  gg--tggagc-t----gg--------------cag-----------------------------------
B D           Squirrel monkey  gggttggagc-t----ga--------------cag-----------------------------------
B D                  Bushbaby  gg---gaggt-t--------------------cag-----------------------------------
           Chinese tree shrew  gagctcccgcgc----cg--------------cag-----------------------------------
B D                  Squirrel  ----cgggtt-tgccccg--------------cag-----------------------------------
                 Prairie vole  ----tagggt-t----------------------------------------------------------
B D           Chinese hamster  ----tagggt-t----------------------------------------------------------
               Golden hamster  ----tagggt-t----------------------------------------------------------
B D                     Mouse  ----taaggt-t----------------------------------------------------------
B D                       Rat  ----taaggt-t----------------------------------------------------------
B D                    Rabbit  ----cctgct-g----------------------------------------------------------
B D                      Pika  -------gcc-a----------------------------------------------------------
B D                       Pig  ----------------gg--------------tgg-----------------------------------
B D                    Alpaca  ----------------gg--------------cag-----------------------------------
               Bactrian camel  ----------------gg--------------cag-----------------------------------
B D                   Dolphin  ----------------gg--------------cag-----------------------------------
                 Killer whale  ----------------gg--------------cag-----------------------------------
             Tibetan antelope  ----------------cg--------------cag-----------------------------------
B D                       Cow  ----------------tt--------------cagtcgtgtccgactctgtgcgaccccataga----tg
B D                     Horse  -----------------g--------------cgc-----------------------------------
B D          White rhinoceros  -----------------g--------------cag-----------------------------------
B D                       Cat  ----------------tg--------------cag-----------------------------------
B D                       Dog  -----------------g--------------cag-----------------------------------
B D                   Ferret   ----------------gg--------------cag-----------------------------------
B D                     Panda  ----------------gg--------------cag-----------------------------------
               Pacific walrus  ----------------gg--------------cag-----------------------------------
                 Weddell seal  ----------------gg--------------cag-----------------------------------
             Black flying-fox  ----------------gg--------------cag-----------------------------------
B D                  Hedgehog  ----------------gggttcc-----------------------------------------------
B D                     Shrew  ----------------gggggcgtcgcgagctcag-----------------------------------
              Star-nosed mole  ----------------gggttttttggggtgttgg-----------------------------------
B D                  Elephant  ------------------------------------------gacgtttaaggattctggcgcagtccga
          Cape elephant shrew  ---------------------------------------------gtctacgga----------------
B D                   Manatee  ------------------------------------------tgcgtttgtggattctcgcgcggtctga
             Cape golden mole  ------------------------------------------ggcctttgagagttctggaacc-ttcca
B D                    Tenrec  -------------------------------------------gactttaggggttc---------tcaa
                     Aardvark  ------------------------------------------gactcataggagttctggaaccgtcaat
      Lesser Egyptian jerboa  ======================================================================
B D                Guinea pig  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
               Big brown bat  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
B D                 Armadillo  ======================================================================
B D                    Lizard  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Gibbon  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================

                        Human  --aaccgtaact--ccctctctgag--------------ggtgaatacg--ggccttgattgcca-g
                        Chimp  --aaccgtaact--ccctctctgag--------------ggtgaatacg--ggccttgattgcca-g
                      Gorilla  --aaccgtaact--ccctctctgag--------------ggtgaataag--ggccttggttgcca-g
                    Orangutan  --aaccgtaact--ccctctctgag--------------ggtgaatacg--ggccttgattgcca-g
                       Rhesus  --aaccataact--ccctctctgag--------------ggtgaaaaag--ggccttgattgcca-g
          Crab-eating macaque  --aaccataact--ccctctctgag--------------ggtgaaaaag--ggccttgattgcca-g
                       Baboon  --aaccataact--ccctctctgag--------------ggtgaaaaag--ggccttaattgcca-g
                 Green monkey  --aaccataact--ccctctctgag--------------ggtgaaaaag--ggccttgattgcca-g
                     Marmoset  --aaccgcaact--ccctctctgag--------------cgtgaaaaca--gaccttgatcacca-g
              Squirrel monkey  --aaccgcaact--ccccctctgag--------------cgtgaaaacg--gtccttgatcgcca-g
                     Bushbaby  --agccgcagcg--ccctccctgag--------------ggtgaaaagg--gg-cttgatcacca-g
           Chinese tree shrew  --agtcccttct--cccttcccgag--------------ggcgaaaacg--gctcttgaccacta-g
                     Squirrel  --agccgcctct--ccctccctgag--------------ggccgagac---ggtccagatcgcca-g
                 Prairie vole  -----------t--ctgtccattag--------------agtggaaatt--ggctctcatcccca-g
              Chinese hamster  -----------t--ctgtccctgtg--------------agtggaaact--agttctgatcccct-g
               Golden hamster  -----------t--ctgtccctgtg--------------ggtggaaact--agttctgatcccct-g
                        Mouse  -----------t--ccgtccctgat--------------agtggaaact--ggcgctagtccccctg
                          Rat  -----------t--ccgcccgtagt--------------agaggaacct--ggcgctggtcccca-g
                       Rabbit  -----------t--ccctccctgag--------------cgcacaca-g--ggacttggttacca-g
                         Pika  -----------c--ctccccct-----------------cgcataaatg--ggccttgctcagca-g
                          Pig  --agtcacgtag--accccctccc---------------ctcgagctcc-----cttgagcag----
                       Alpaca  --agccactcag--aactccttga---------------ggtggaagcg--ggtcttgactatca-g
               Bactrian camel  --agccactcag--aactccttga---------------ggtggaagcg--ggtcttgactatca-g
                      Dolphin  --agccacccag--agctccctgag--------------ggcgaaagcg--ggtcttgaccagca-g
                 Killer whale  --agccacccag--agctccctgag--------------ggcgaaagcg--ggtcttgaccagca-g
             Tibetan antelope  --agccacgcag--agctcccaggg--------------ggcgagagcg--ggtcctgactagca-g
                          Cow  gcagcccaccag--gctccccagtgcctgggattctccaggcaagaacactggagcggattgcca-t
                        Horse  --tgc-----ag--agctccctg-a--------------gggcgaaaat--gggctggaccactg-g
             White rhinoceros  --agctcgcagg--agctccctg-a--------------gggcaaaaac--ggggtggaccgctg-g
                          Cat  --agcggtcctg--agctccctggg--------------gggc-gaacg--ggccttggccatca-g
                          Dog  --agcc-tcgtg--cgctctc---g--------------gggcgggatc--ggggcgggacgcca-g
                      Ferret   --agctgacctg--tgctcgctggg--------------gggcgggacg--gtctttgaccttca-g
                        Panda  --agcagtcttg--cgctcgctggg--------------gggcgggacg--ggctttgaccacca-g
               Pacific walrus  --agcagtcctg--cgctccttggg--------------gtgcgggacg--ggctttgagcacca-g
                 Weddell seal  --agcagtcctg--cgctccctggg--------------gtgcgggacg--ggctttgagcacca-g
             Black flying-fox  --aaccgctccg--gactccttaaa--------------ggcgaaaagg--ggccttgactgcca-g
                     Hedgehog  ---------------acacccggcg--------------ggcgaaagcg--gcactttggcttca-g
                        Shrew  --agccgcctcg--agctgtccgag--------------agcaaga-------acttgacaagca-g
              Star-nosed mole  --gttcgccccg--agctccctgaa--------------gaagaaacca--g-acttgaccacca-g
                     Elephant  gccgccctctcc--ccgttcccgag--------------ggagaatgcg--gaccttggccagta-g
          Cape elephant shrew  ----------cc--atgttctctta--------------agaga-------gaccttaggtagcc-t
                      Manatee  gccgctctcttt--tcctctctggg--------------gccgaaagcg--gaccttggccagca-g
             Cape golden mole  gccaccctcttt--acc-tcctgag--------------ggtgaataca--gacct-gatttgca-g
                       Tenrec  gccgccccttct--cccgtcctgcg--------------gagaatcacg--ggcctcggccagca-g
                     Aardvark  accgctctctctcgctcttcctgag--------------ggcgaatata--gaccttgaccagca-g
       Lesser Egyptian jerboa  ===================================================================
                   Guinea pig  ===================================================================
             Brush-tailed rat  ===================================================================
                   Chinchilla  ===================================================================
                Big brown bat  ===================================================================
                Domestic goat  ===================================================================
                        Sheep  ===================================================================
                     Microbat  ===================================================================
         David's myotis (bat)  ===================================================================
                    Armadillo  ===================================================================
                       Lizard  ===================================================================
     Chinese softshell turtle  ===================================================================
               Painted turtle  ===================================================================
              Green seaturtle  ===================================================================
                       Turkey  ===================================================================
                      Chicken  ===================================================================
                 Mallard duck  ===================================================================
                       Parrot  ===================================================================
                   Budgerigar  ===================================================================
           Tibetan ground jay  ===================================================================
                  Zebra finch  ===================================================================
          Medium ground finch  ===================================================================
       White-throated sparrow  ===================================================================
          Collared flycatcher  ===================================================================
             Peregrine falcon  ===================================================================
                 Saker falcon  ===================================================================
                  Rock pigeon  ===================================================================
           American alligator  ===================================================================
                      Opossum  ===================================================================
               Naked mole-rat  ===================================================================
                       Gibbon  -------------------------------------------------------------------
                      Megabat  ===================================================================

Inserts between block 1 and 2 in window
B D                      Cow 74bp

Alignment block 2 of 129 in window, 33893263 - 33893303, 41 bps 
B D                     Human  aagggccctcggccgg--g------gacgcgggatgatgcg-------------------------g---
B D                     Chimp  aagggccctcggacgg--g------gacgcgggatgatgcg-------------------------g---
B D                   Gorilla  aagggccctcggacgg--g------gacgcgggatgatgcg-------------------------g---
B D                 Orangutan  aaggg-cctcagacgg--g------gacgcgggatgatgcg-------------------------g---
B D                    Rhesus  aagggccctcgaatgg--g------gacgcgggatgaagcg-------------------------g---
B D       Crab-eating macaque  aagggccctcgaatgg--g------gacgcgggatgaagcg-------------------------g---
B D                    Baboon  aagggccctcgaatgg--g------gacgcgggatgaagcg-------------------------g---
B D              Green monkey  aagggccctcaaatgg--g------gacgcgggatgaagcg-------------------------g---
B D                  Marmoset  atgggtcttcggatgg--g------gacgcgggatgaagct-------------------------g---
B D           Squirrel monkey  atgggtcttcggatgg--g------aacgcggga------------------------------------
B D                  Bushbaby  aagggtgcgcggatga--g------ggagcaggatgaagcg-------------------------g---
           Chinese tree shrew  aagggtccacagatcc--g------ggcgcggaa----gcc-------------------------g---
B D                  Squirrel  aagggtccacgg-agg--g------agcgcgggaggaatcg-------------------------g---
                 Prairie vole  gagaatccgtt--cag--g------aacacagtagaaagtg-------------------------g---
B D           Chinese hamster  gagagtccgtt--cag--g------gacgcaggagaaagcg-------------------------g---
               Golden hamster  gagagtccgtt--cag--g------ggcgccggagaaagcg-------------------------g---
B D                     Mouse  tagagactgttg-ggg--g------ggcgcagaagaaagtg-------------------------g---
B D                       Rat  tagagaccgtt--cac--g------ggtgcaggagaaagtg-------------------------g---
B D                    Rabbit  aag----------------------------ggagagagag------------------------ca---
B D                      Pika  aagggtccaca--gat--a------gcggctggagaggaag------------------------ca---
B D                       Pig  aagggtccgagggtggcca------ggtgctggaggaagca-------------------------g---
B D                    Alpaca  aagggtcccaggatgg---------ggcgcaggaggaagtg-------------------------g---
               Bactrian camel  aagggtcccaggatgg---------ggcgcaggaggaagtg-------------------------g---
B D                   Dolphin  gagggtccgaggatgg---------ggtgcgggaggaagcg-------------------------t---
                 Killer whale  gagggtccgaggatgg---------ggtgcgggaggaagcg-------------------------t---
             Tibetan antelope  acgggtccgaggacgg---------gaagcgggaggaagtg-------------------------g---
B D                     Horse  aagggtccgaggatgg--g------ggcgcggaggcagcgg-------------------------g---
B D          White rhinoceros  aa-ggtccgaggatgg--g------gcgcaggaggcagcag-------------------------g---
B D                       Cat  aagggtccgagggcgg--g------ggcgcgggaagaaggg-------------------------g---
B D                       Dog  aagggtccgaggccgg--g------tgcgcgggggg----------------------------------
B D                   Ferret   aagggtccgaggactg--g------ggcgcgggaggaagcg-------------------------g---
B D                     Panda  aagggtccgaggatcc--g------ggcgcgggaggaagcg-------------------------g---
               Pacific walrus  aagggtccgaggactg--ggggtgcggtgcgggaggaagcg-------------------------g---
                 Weddell seal  aagggtccgaggac------ggggtggggcgggaggaagcg-------------------------g---
             Black flying-fox  aagggtccgaggatgg--g------agcgagggaggaagca-------------------------g---
B D                  Hedgehog  agggctccgaggacgg--g------cgctcaggagggagcg-------------------------a---
B D                     Shrew  aggggtccgggggcta--g------tctcccg---ggagct-------------------------t---
              Star-nosed mole  aagggtccgagggtgc--g------ggcacagga-ggagcg-------------------------tggg
B D                  Elephant  -aaggtccgcggatgg--g------gacgcgggaggaagca-------------agaagaggagggg---
          Cape elephant shrew  -aaggtctgtagatgg--g------gac---------agaa-------------gaaggagaagctg---
B D                   Manatee  -gaggtccgcggatgg--g------gacgcgggagaaagcaagaagaggcgaggggaagaggcgagg---
             Cape golden mole  -aaggtccgcagatgg-tg------ggccccagaggaagca-------------------ggaga-----
B D                    Tenrec  -atgctccatagatgg--g------gacgcgggaggaagga-------------------ggagagg---
                     Aardvark  -aaagtccgcggacag--a------gatgcgacaggaagct-------------ggaagaggagtgg---
      Lesser Egyptian jerboa  ======================================================================
B D                Guinea pig  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
               Big brown bat  ======================================================================
B D                       Cow  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
B D                 Armadillo  ======================================================================
B D                    Lizard  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Gibbon  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================

                        Human  --ggc-cg--------gg
                        Chimp  --ggc-cg--------gg
                      Gorilla  --ggc-cg--------gg
                    Orangutan  --ggc-cg--------gg
                       Rhesus  --ggc-cgggggcagcgg
          Crab-eating macaque  --ggc-cgggggcagcgg
                       Baboon  --ggc-cgggggcagcgg
                 Green monkey  --ggc-cgggggcagcgg
                     Marmoset  --ggc-cc--------gg
              Squirrel monkey  ------------------
                     Bushbaby  --gag-tgg-------gg
           Chinese tree shrew  --ggc-gggcg-----ag
                     Squirrel  --gga-tgc---------
                 Prairie vole  --gga-tcc-------aa
              Chinese hamster  --gga-tcc-------ga
               Golden hamster  --gaa-tcc-------ga
                        Mouse  --gga-tcg-------ga
                          Rat  --gga-tca-------ga
                       Rabbit  --gga-gct-------gg
                         Pika  --gga-gcg-------ag
                          Pig  --gag-tcg-------g-
                       Alpaca  --gaa-tgg-------t-
               Bactrian camel  --gaa-tgg-------t-
                      Dolphin  --gga-tgg-------g-
                 Killer whale  --gga-tgg-------g-
             Tibetan antelope  --gag-tgg-------g-
                        Horse  --ggc-ggg-------g-
             White rhinoceros  --ggtgggg-------g-
                          Cat  --gac-ggg-------g-
                          Dog  ------------------
                      Ferret   --ggc-tgg-------g-
                        Panda  --ggc-tgg-------g-
               Pacific walrus  --ggc-tgg-------g-
                 Weddell seal  --ggc-tgg-------g-
             Black flying-fox  --ggt-gga-------g-
                     Hedgehog  --ggc-tgg---------
                        Shrew  --gcg-agg---------
              Star-nosed mole  gggtg-agg---------
                     Elephant  --gac-gga-------g-
          Cape elephant shrew  --ggc-aga-------a-
                      Manatee  --ggc-gga-------g-
             Cape golden mole  --ggc-agg-------a-
                       Tenrec  --ggc-cga-------a-
                     Aardvark  --agc-ggg-------g-
       Lesser Egyptian jerboa  ==================
                   Guinea pig  ==================
             Brush-tailed rat  ==================
                   Chinchilla  ==================
                Big brown bat  ==================
                          Cow  ==================
                Domestic goat  ==================
                        Sheep  ==================
                     Microbat  ==================
         David's myotis (bat)  ==================
                    Armadillo  ==================
                       Lizard  ==================
     Chinese softshell turtle  ==================
               Painted turtle  ==================
              Green seaturtle  ==================
                       Turkey  ==================
                      Chicken  ==================
                 Mallard duck  ==================
                       Parrot  ==================
                   Budgerigar  ==================
           Tibetan ground jay  ==================
                  Zebra finch  ==================
          Medium ground finch  ==================
       White-throated sparrow  ==================
          Collared flycatcher  ==================
             Peregrine falcon  ==================
                 Saker falcon  ==================
                  Rock pigeon  ==================
           American alligator  ==================
                      Opossum  ==================
               Naked mole-rat  ==================
                       Gibbon  ------------------
                      Megabat  ==================

Inserts between block 2 and 3 in window
B D                      Pig 10bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 379bp

Alignment block 3 of 129 in window, 33893304 - 33893306, 3 bps 
B D                     Human  -aga
B D                     Chimp  -aga
B D                   Gorilla  -aga
B D                 Orangutan  -ggg
B D                    Rhesus  -ggg
B D       Crab-eating macaque  -ggg
B D                    Baboon  -ggg
B D              Green monkey  -ggg
B D                  Marmoset  -ggg
B D                  Bushbaby  -ggg
           Chinese tree shrew  -ggg
                 Prairie vole  -gga
B D           Chinese hamster  -gga
               Golden hamster  -gga
B D                     Mouse  -ggg
B D                       Rat  -gga
B D                    Rabbit  -gg-
B D                      Pika  -ggg
B D                       Pig  -ggg
B D                    Alpaca  -ggg
               Bactrian camel  -ggg
B D                   Dolphin  -ggg
                 Killer whale  -ggg
B D                     Horse  --gg
B D          White rhinoceros  --gg
B D                       Cat  --gg
B D                   Ferret   --gg
B D                     Panda  --gg
               Pacific walrus  --gg
                 Weddell seal  --gg
             Black flying-fox  --gg
B D                  Hedgehog  -ggg
B D                     Shrew  -gcg
              Star-nosed mole  -ggg
B D                  Elephant  aggg
          Cape elephant shrew  agcg
B D                   Manatee  aggg
             Cape golden mole  aggg
B D                    Tenrec  aggg
                     Aardvark  aggg
      Lesser Egyptian jerboa  ====
B D                Guinea pig  ====
            Brush-tailed rat  ====
                  Chinchilla  ====
               Big brown bat  ====
B D                       Cow  ====
               Domestic goat  ====
B D                     Sheep  ====
            Tibetan antelope  ====
B D                  Microbat  ====
        David's myotis (bat)  ====
B D                 Armadillo  ====
B D                  Squirrel  ----
B D                       Dog  ----
B D                    Lizard  ====
  D  Chinese softshell turtle  ====
  D            Painted turtle  ====
  D           Green seaturtle  ====
B D                    Turkey  ====
B D                   Chicken  ====
  D              Mallard duck  ====
  D                    Parrot  ====
B D                Budgerigar  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
B D       Medium ground finch  ====
  D    White-throated sparrow  ====
  D       Collared flycatcher  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
  D               Rock pigeon  ====
B D        American alligator  ====
B D                   Opossum  ====
B D            Naked mole-rat  ====
B D                    Gibbon  ----
B D                   Megabat  ====
B D           Squirrel monkey  ----

Inserts between block 3 and 4 in window
B D                      Cat 5bp
B D                    Panda 234bp
            Black flying-fox 1bp

Alignment block 4 of 129 in window, 33893307 - 33893325, 19 bps 
B D                     Human  tgc-----------------------tttcctggaggctgag
B D                     Chimp  tgc-----------------------tttcctggaggctggg
B D                   Gorilla  tgc-----------------------tttcctggaggctggg
B D                 Orangutan  tgc-----------------------tttcctggaggctggg
B D                    Rhesus  cgc-----------------------tttcctggaggctggg
B D       Crab-eating macaque  cgc-----------------------tttcctggaggctggg
B D                    Baboon  cgc-----------------------tttcctggaggctggg
B D              Green monkey  tgc-----------------------tttcctggaggctggg
B D                  Marmoset  tgt-----------------------ttttttggaggctggg
B D           Squirrel monkey  tgt-----------------------tttttcggaggctggg
B D                  Bushbaby  tgc-----------------------tttcccggaggctggg
           Chinese tree shrew  tgc-----------------------tgtactggaggcgggg
B D                  Squirrel  -----------------------------tttctggggctgg
                 Prairie vole  ccc-----------------------ttgtctgtaggcccag
B D           Chinese hamster  ccc-----------------------tggtctgtaggcccag
               Golden hamster  ccc-----------------------ttgtctgtaggcccag
B D                     Mouse  cac-----------------------ttgtctgtcggccgct
B D                       Rat  cac-----------------------ttaactgtaggccgct
B D                    Rabbit  -tg-----------------------ctttc-----------
B D                      Pika  ttg-----------------------ctgtctgtaggct---
B D                       Pig  cgc-----------------------cgtcctggaggccggg
B D                    Alpaca  gac-----------------------cttcttaggggctggg
               Bactrian camel  gac-----------------------cttcttaggggctggg
B D                   Dolphin  cgc-----------------------cttcctggaggctggg
                 Killer whale  cgc-----------------------cttcctggaggctggg
B D                     Horse  cac-----------------------cttgctggaggctgga
B D          White rhinoceros  cgc-----------------------cgccctggagcccggg
B D                       Cat  gga-----------------------cgtcctggaggctgag
B D                       Dog  cgc-----------------------cgtcctggaggctggg
B D                   Ferret   cgc-----------------------cgtcctggaggctggg
               Pacific walrus  cgc-----------------------cgtcctggagcctggg
                 Weddell seal  cgc-----------------------cgtcctggagcctggg
             Black flying-fox  cgc-----------------------cttcttggaagctggg
B D                  Hedgehog  cgc-----------------------cctgttggaggcggga
B D                     Shrew  agc-----------catgctcctcgctctg------------
              Star-nosed mole  cgcctcctggaacacattctctttg-gctgc--aaagcaaga
B D                  Elephant  ctc-----------------------tttccttg----aggg
          Cape elephant shrew  ccc-----------------------ttttcttgaggcagga
B D                   Manatee  cgc-----------------------ttttcctgaggctggg
             Cape golden mole  tgc------------------------ttcccggaggctgag
B D                    Tenrec  cgc-----------------------tttcttgggggctgcg
                     Aardvark  cgc-----------------------ctcccttgaggctggg
      Lesser Egyptian jerboa  ==========================================
B D                Guinea pig  ==========================================
            Brush-tailed rat  ==========================================
                  Chinchilla  ==========================================
B D                     Panda  ==========================================
               Big brown bat  ==========================================
B D                       Cow  ==========================================
               Domestic goat  ==========================================
B D                     Sheep  ==========================================
            Tibetan antelope  ==========================================
B D                  Microbat  ==========================================
        David's myotis (bat)  ==========================================
B D                 Armadillo  ==========================================
B D                    Lizard  ==========================================
  D  Chinese softshell turtle  ==========================================
  D            Painted turtle  ==========================================
  D           Green seaturtle  ==========================================
B D                    Turkey  ==========================================
B D                   Chicken  ==========================================
  D              Mallard duck  ==========================================
  D                    Parrot  ==========================================
B D                Budgerigar  ==========================================
          Tibetan ground jay  ==========================================
B D               Zebra finch  ==========================================
B D       Medium ground finch  ==========================================
  D    White-throated sparrow  ==========================================
  D       Collared flycatcher  ==========================================
  D          Peregrine falcon  ==========================================
  D              Saker falcon  ==========================================
  D               Rock pigeon  ==========================================
B D        American alligator  ==========================================
B D                   Opossum  ==========================================
B D            Naked mole-rat  ==========================================
B D                    Gibbon  ------------------------------------------
B D                   Megabat  ==========================================

Inserts between block 4 and 5 in window
B D                 Squirrel 3bp
                Prairie vole 171bp
B D          Chinese hamster 38bp
              Golden hamster 38bp
B D                    Mouse 21bp
B D                      Rat 18bp
B D                   Rabbit 3bp
B D                     Pika 3bp

Alignment block 5 of 129 in window, 33893326 - 33893330, 5 bps 
B D                     Human  aaa---cc------------------------------------------
B D                     Chimp  aaa---cc------------------------------------------
B D                   Gorilla  aaa---cc------------------------------------------
B D                 Orangutan  aaa---cc------------------------------------------
B D                    Rhesus  aaa---cc------------------------------------------
B D       Crab-eating macaque  aaa---cc------------------------------------------
B D                    Baboon  aaa---cc------------------------------------------
B D              Green monkey  aaa---cc------------------------------------------
B D                  Marmoset  aaa---cc------------------------------------------
B D           Squirrel monkey  aaa---cc------------------------------------------
B D                  Bushbaby  aaa---cc------------------------------------------
           Chinese tree shrew  gag---cc------------------------------------------
B D                  Squirrel  aga-----------------------------------------------
B D           Chinese hamster  aga-----------------------------------------------
               Golden hamster  aga-----------------------------------------------
B D                     Mouse  aga-----------------------------------------------
B D                       Rat  aga-----------------------------------------------
B D                    Rabbit  agg-----------------------------------------------
B D                      Pika  aga-----------------------------------------------
B D                       Pig  gaa---cc------------------------------------------
B D                    Alpaca  gag---cc------------------------------------------
               Bactrian camel  gag---cc------------------------------------------
B D                   Dolphin  gag---cc------------------------------------------
                 Killer whale  gag---cc------------------------------------------
B D                     Horse  cag---cc------------------------------------------
B D          White rhinoceros  gcg---cc------------------------------------------
B D                       Cat  aag---cc------------------------------------------
B D                       Dog  gag---ct------------------------------------------
B D                   Ferret   gag---cc------------------------------------------
               Pacific walrus  gag---cc------------------------------------------
                 Weddell seal  gag---cc------------------------------------------
             Black flying-fox  gag---cc------------------------------------------
B D                  Hedgehog  ggg---c-------------------------------------------
B D                     Shrew  ------c-------------------------------------------
              Star-nosed mole  ggaggcc-------------------------------------------
B D                  Elephant  gaa---cctctcgcagcccgcttctgctc--------cttcagttttgct
          Cape elephant shrew  aaa---tctttggcggtctgtttctgctctcttacttctggagctgc--c
B D                   Manatee  gaa---cctctcgcagctcgcttctgc----------------------t
             Cape golden mole  gaa---cctcatttcttctccttcagttc--------------------t
B D                    Tenrec  g---------------tgggcttctgctt--------------------t
                     Aardvark  gta---cctctcccagtttgcttctgctc--------tttcagttc---t
      Lesser Egyptian jerboa  ==================================================
B D                Guinea pig  ==================================================
            Brush-tailed rat  ==================================================
                  Chinchilla  ==================================================
                Prairie vole  ==================================================
B D                     Panda  ==================================================
               Big brown bat  ==================================================
B D                       Cow  ==================================================
               Domestic goat  ==================================================
B D                     Sheep  ==================================================
            Tibetan antelope  ==================================================
B D                  Microbat  ==================================================
        David's myotis (bat)  ==================================================
B D                 Armadillo  ==================================================
B D                    Lizard  ==================================================
  D  Chinese softshell turtle  ==================================================
  D            Painted turtle  ==================================================
  D           Green seaturtle  ==================================================
B D                    Turkey  ==================================================
B D                   Chicken  ==================================================
  D              Mallard duck  ==================================================
  D                    Parrot  ==================================================
B D                Budgerigar  ==================================================
          Tibetan ground jay  ==================================================
B D               Zebra finch  ==================================================
B D       Medium ground finch  ==================================================
  D    White-throated sparrow  ==================================================
  D       Collared flycatcher  ==================================================
  D          Peregrine falcon  ==================================================
  D              Saker falcon  ==================================================
  D               Rock pigeon  ==================================================
B D        American alligator  ==================================================
B D                   Opossum  ==================================================
B D            Naked mole-rat  ==================================================
B D                    Gibbon  --------------------------------------------------
B D                   Megabat  ==================================================

Inserts between block 5 and 6 in window
          Chinese tree shrew 94bp

Alignment block 6 of 129 in window, 33893331 - 33893357, 27 bps 
B D                     Human  -tggagggag-------a---------------------------------------------------c
B D                     Chimp  -tggagggag-------a---------------------------------------------------c
B D                   Gorilla  -tggagggag-------a---------------------------------------------------c
B D                 Orangutan  -tggagggag-------g---------------------------------------------------c
B D                    Rhesus  -tggagggag-------g---------------------------------------------------c
B D       Crab-eating macaque  -tggagggag-------g---------------------------------------------------c
B D                    Baboon  -tggagggag-------g---------------------------------------------------c
B D              Green monkey  -tggagggag-------g---------------------------------------------------c
B D                  Marmoset  -tggagggcg-------g---------------------------------------------------c
B D           Squirrel monkey  -tggagggag-------g---------------------------------------------------c
B D                  Bushbaby  -gagagaggg-------t---------------------------------------------------c
B D                  Squirrel  -tgcagggag-------c---------------------------------------------------c
B D           Chinese hamster  -ctg-aaacg-------c---------------------------------------------------c
               Golden hamster  -ctg-aagcg-------c---------------------------------------------------c
B D                     Mouse  -ttgaaaatg-------c---------------------------------------------------c
B D                       Rat  -ttgaaaatg-------c---------------------------------------------------c
B D                    Rabbit  -cggca----------------------------------------------------------------
B D                      Pika  -cagca--cc-------c---------------------------------------------------a
B D                       Pig  -gggagaggg-------g---------------------------------------------------c
B D                    Alpaca  -gggagagag-------g---------------------------------------------------c
               Bactrian camel  -gggagagag-------g---------------------------------------------------c
B D                   Dolphin  -gggagagag-------a---------------------------------------------------g
                 Killer whale  -gggagagag-------a---------------------------------------------------g
B D                       Cow  -ggactgcag-------c---------------------------------------------------c
B D                     Horse  -gggagagag-------gagagggaggcccccgagggagaggcggtagccgtgccctcggtgggtcgcag
B D          White rhinoceros  -ggcagagag-------g---------------------------------------------------g
B D                       Cat  -tggagagag-------g---------------------------------------------------c
B D                       Dog  -gcgggagaggagacgcg---------------------------------------------------c
B D                   Ferret   -cggagagat-------g---------------------------------------------------c
               Pacific walrus  -gggagagag-------g---------------------------------------------------c
                 Weddell seal  -gggagagag-------g---------------------------------------------------c
             Black flying-fox  -ggagaagag-------g---------------------------------------------------c
B D                  Hedgehog  -ggcgggaag-------a---------------------------------------------------c
B D                     Shrew  -tgcccctct-------c---------------------------------------------------t
              Star-nosed mole  -tgccgtgcc-------t---------------------------------------------------c
B D                  Elephant  gctactaggg-------t---------------------------------------------------c
          Cape elephant shrew  agtaaacaaa-------c---------------------------------------------------c
B D                   Manatee  gctgccagga-------t---------------------------------------------------c
             Cape golden mole  tatactgcga-------t---------------------------------------------------g
B D                    Tenrec  gccacagctg-------c---------------------------------------------------t
                     Aardvark  gctgctgcca-------g---------------------------------------------------g
      Lesser Egyptian jerboa  ======================================================================
B D                Guinea pig  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
                Prairie vole  ======================================================================
B D                     Panda  ======================================================================
               Big brown bat  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
B D                 Armadillo  ======================================================================
          Chinese tree shrew  ======================================================================
B D                    Lizard  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Gibbon  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================

                        Human  ccc------------ca-aaactt---------ctca-g
                        Chimp  ccc------------ca-aaactt---------ctca-g
                      Gorilla  ccc------------ca-aaactt---------ctca-g
                    Orangutan  ccc------------ca-aaactt---------ctca-g
                       Rhesus  ccc------------ccaaaacct---------cttg-g
          Crab-eating macaque  ccc------------ccaaaacct---------cttg-g
                       Baboon  ccc------------ccaaaacct---------ctcg-g
                 Green monkey  ccc------------cc-aaacct---------ctca-g
                     Marmoset  ccc------------ca-aagctt---------ctca-g
              Squirrel monkey  ccc------------ca-aggctt---------ctca-g
                     Bushbaby  ctg------------tc----gtt---------cccg-g
                     Squirrel  ccg------------ag----------------cttgta
              Chinese hamster  ttt------------ta----------------ctca-a
               Golden hamster  tta------------tg----------------ctca-a
                        Mouse  ttt------------tc----------------ctca-a
                          Rat  ttt------------tc----------------ctca-a
                       Rabbit  --------------------------------------g
                         Pika  agg------------tg----------------ctag-a
                          Pig  ccc------------tt--aacct---------ctcg-g
                       Alpaca  ccc------------ca--cgctt---------ctcg-g
               Bactrian camel  ccc------------ca--cgctt---------ctcg-g
                      Dolphin  ccc------------ca--cgctt---------ctcg-g
                 Killer whale  ccc------------ca--cgctt---------ctcg-g
                          Cow  ttc------------cg--ggctc---------ctct-g
                        Horse  gccgcctctgcactgcc--cgctg---------ctgc-g
             White rhinoceros  gcc------------ca--cgctt---------ctca-g
                          Cat  tcc------------ca--cgctt---------cttg-a
                          Dog  tcc------------tg--cgccttcagcccgcctga-g
                      Ferret   cct------------ca--tgaac---------cgaa-g
               Pacific walrus  ccc------------ca--cgctt---------ctcg-g
                 Weddell seal  ccc------------ca--cgctt---------ctta-g
             Black flying-fox  ccc------------ca--ctctc---------ctca-t
                     Hedgehog  gcc------------cc--cgggt---------tcca-c
                        Shrew  gcc------------cg--ggatt----ggcgagctc-g
              Star-nosed mole  tcc------------ca--cgact---------gcct-t
                     Elephant  ttc------------ct--atgtt---------ctta-g
          Cape elephant shrew  ttc------------------------------ctta-g
                      Manatee  ctg------------ct--atgtt---------ctta-g
             Cape golden mole  gac------------at--aaatt---------ctta-g
                       Tenrec  agc------------ct--gggtt---------cc---a
                     Aardvark  tgc------------ct--atgta---------ctta-g
       Lesser Egyptian jerboa  =======================================
                   Guinea pig  =======================================
             Brush-tailed rat  =======================================
                   Chinchilla  =======================================
                 Prairie vole  =======================================
                        Panda  =======================================
                Big brown bat  =======================================
                Domestic goat  =======================================
                        Sheep  =======================================
             Tibetan antelope  =======================================
                     Microbat  =======================================
         David's myotis (bat)  =======================================
                    Armadillo  =======================================
           Chinese tree shrew  =======================================
                       Lizard  =======================================
     Chinese softshell turtle  =======================================
               Painted turtle  =======================================
              Green seaturtle  =======================================
                       Turkey  =======================================
                      Chicken  =======================================
                 Mallard duck  =======================================
                       Parrot  =======================================
                   Budgerigar  =======================================
           Tibetan ground jay  =======================================
                  Zebra finch  =======================================
          Medium ground finch  =======================================
       White-throated sparrow  =======================================
          Collared flycatcher  =======================================
             Peregrine falcon  =======================================
                 Saker falcon  =======================================
                  Rock pigeon  =======================================
           American alligator  =======================================
                      Opossum  =======================================
               Naked mole-rat  =======================================
                       Gibbon  ---------------------------------------
                      Megabat  =======================================

Inserts between block 6 and 7 in window
B D                 Squirrel 5bp
B D          Chinese hamster 10bp
              Golden hamster 10bp
B D                    Mouse 56bp
B D                      Rat 10bp
B D                   Rabbit 2bp
B D                     Pika 2bp

Alignment block 7 of 129 in window, 33893358 - 33893364, 7 bps 
B D                     Human  ttcgccg
B D                     Chimp  ttcgccg
B D                   Gorilla  ttcgccg
B D                 Orangutan  ttcgcca
B D                    Rhesus  ttcgccg
B D       Crab-eating macaque  ttcgccg
B D                    Baboon  ttcgccg
B D              Green monkey  ttcgccg
B D                  Marmoset  ttc-tgg
B D           Squirrel monkey  ttc-cgg
B D                  Bushbaby  tttgtc-
           Chinese tree shrew  ttcgccg
B D                       Pig  ttcccac
B D                    Alpaca  ttcgcag
               Bactrian camel  ttcgcag
B D                   Dolphin  ttcgcgg
                 Killer whale  ttcgcgg
B D                       Cow  tccatgg
B D                     Horse  ccttccg
B D          White rhinoceros  ttcctcg
B D                       Cat  ttcgcgg
B D                       Dog  cctggag
B D                   Ferret   ttcgcgg
               Pacific walrus  ttcgcgg
                 Weddell seal  ttcgcgg
             Black flying-fox  ttcgcgg
B D                  Hedgehog  gccccgc
B D                     Shrew  gcggctc
              Star-nosed mole  ctgtccc
B D                  Elephant  tt-----
          Cape elephant shrew  tt-----
B D                   Manatee  tc-----
             Cape golden mole  tg-----
B D                    Tenrec  cg-----
                     Aardvark  gt-----
      Lesser Egyptian jerboa  =======
B D                Guinea pig  =======
            Brush-tailed rat  =======
                  Chinchilla  =======
                Prairie vole  =======
B D           Chinese hamster  =======
B D                     Mouse  =======
              Golden hamster  =======
B D                      Pika  =======
B D                       Rat  =======
B D                     Panda  =======
               Big brown bat  =======
               Domestic goat  =======
B D                     Sheep  =======
            Tibetan antelope  =======
B D                  Microbat  =======
        David's myotis (bat)  =======
B D                 Armadillo  =======
B D                  Squirrel  =======
B D                    Lizard  =======
  D  Chinese softshell turtle  =======
  D            Painted turtle  =======
  D           Green seaturtle  =======
B D                    Turkey  =======
B D                   Chicken  =======
  D              Mallard duck  =======
  D                    Parrot  =======
B D                Budgerigar  =======
          Tibetan ground jay  =======
B D               Zebra finch  =======
B D       Medium ground finch  =======
  D    White-throated sparrow  =======
  D       Collared flycatcher  =======
  D          Peregrine falcon  =======
  D              Saker falcon  =======
  D               Rock pigeon  =======
B D        American alligator  =======
B D                   Opossum  =======
B D            Naked mole-rat  =======
B D                    Rabbit  =======
B D                    Gibbon  -------
B D                   Megabat  =======

Inserts between block 7 and 8 in window
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
B D                      Cow 18bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                 Hedgehog 16bp
B D                    Shrew 25bp
             Star-nosed mole 37bp

Alignment block 8 of 129 in window, 33893365 - 33893386, 22 bps 
B D                     Human  acccctt--------------ggtcccag-------------a----gggag----a-
B D                     Chimp  acccctt--------------ggtcccag-------------a----gggag----a-
B D                   Gorilla  acccctt--------------ggtcccag-------------a----gggag----a-
B D                 Orangutan  acccctt--------------ggtcccag-------------a----gggag----a-
B D                    Rhesus  acccctt--------------agtcccag-------------a----gggat----a-
B D       Crab-eating macaque  acccctt--------------agtcccag-------------a----gggat----a-
B D                    Baboon  acacctt--------------agtcccag-------------a----gggat----a-
B D              Green monkey  acccctt--------------agtcccag-------------a----gggat----a-
B D                  Marmoset  actcctt--------------ggtcccaa-------------a----gggag----a-
B D           Squirrel monkey  acccctt--------------ggtcccaa-------------a----gggag----a-
B D                  Bushbaby  -ccccgc--------------gggcccag-------------a----gttgg----g-
           Chinese tree shrew  g--gctg--------------ggtcccaa-------------a----gggaggccaa-
B D                  Squirrel  ------------------------------------------------gggg----c-
B D           Chinese hamster  ----------------------gtcc----------------------ggag----c-
               Golden hamster  ----------------------gtcc----------------------ggag----c-
B D                     Mouse  ----------------------atcc----------------------cgag----c-
B D                       Rat  ----------------------ctcc----------------------ggag----c-
B D                    Rabbit  ------------------------------------------------ggag----a-
B D                      Pika  ------------------------------------------------ggag----a-
B D                       Pig  -ctccct--------------tggcacag-------------a----gggag----a-
B D                    Alpaca  ccacctt--------------ggccccag-------------g----gggag----a-
               Bactrian camel  ccacctt--------------ggccccag-------------g----gggag----a-
B D                   Dolphin  ccccctt--------------ggtcccag-------------a----gggag----a-
                 Killer whale  ccccctt--------------ggtcccag-------------a----gggag----a-
             Tibetan antelope  actgcct--------------ggtcccaa-------------agcaggagcg----a-
B D                       Cow  actgcct--------------ggtcccaa-------------agcaggagcg----a-
B D                     Sheep  actgcct--------------ggtcccaa-------------agcaggagcg----a-
                Domestic goat  actgcct--------------ggtcccaa-------------agcaggagcg----a-
B D                     Horse  cctgc-t--------------gccc---------------------------------
B D          White rhinoceros  cccct-t--------------ggccccag-------------a----gggag----a-
B D                       Cat  ccccctt--------------ggccccag-------------a----gggag----a-
B D                       Dog  cccccgtagtgggtcgctgcgggtcccag-------------a----ccggc----g-
B D                   Ferret   attccat--------------ggctccag-------------a----gggag----a-
               Pacific walrus  cccccgt--------------ggccccag-------------a----gggag----a-
                 Weddell seal  ccgccat--------------ggccccag-------------a----gggag----a-
             Black flying-fox  cctccgt--------------ggccccag-------------a----cgggg----a-
B D                  Hedgehog  ccggccg--------------ggcgcgagtgggtgccgcgcag----cacag----a-
B D                     Shrew  cctgcct--------------agtcccaa-------agtaaag----ggaag----a-
              Star-nosed mole  cctgggg--------------ggttgaaa----------gaaa----gacaa----a-
B D                  Elephant  gcttcag--------------ggtctcaa-------------a----gcaag----ca
          Cape elephant shrew  gctccca--------------gttaccaa-------------a----gcaag----ca
B D                   Manatee  gccccag--------------ggtctcaa-------------a----acaag----cg
             Cape golden mole  gcggccg--------------gcgcccaa-------------a----gcaag----ta
B D                    Tenrec  acggtcg-------------------caa-------------a----gcgag----cg
                     Aardvark  gctggcg--------------ggtcccag-------------a----gcagg----cg
      Lesser Egyptian jerboa  ==========================================================
B D                Guinea pig  ==========================================================
            Brush-tailed rat  ==========================================================
                  Chinchilla  ==========================================================
                Prairie vole  ==========================================================
B D                     Panda  ==========================================================
               Big brown bat  ==========================================================
B D                  Microbat  ==========================================================
        David's myotis (bat)  ==========================================================
B D                 Armadillo  ==========================================================
B D                    Lizard  ==========================================================
  D  Chinese softshell turtle  ==========================================================
  D            Painted turtle  ==========================================================
  D           Green seaturtle  ==========================================================
B D                    Turkey  ==========================================================
B D                   Chicken  ==========================================================
  D              Mallard duck  ==========================================================
  D                    Parrot  ==========================================================
B D                Budgerigar  ==========================================================
          Tibetan ground jay  ==========================================================
B D               Zebra finch  ==========================================================
B D       Medium ground finch  ==========================================================
  D    White-throated sparrow  ==========================================================
  D       Collared flycatcher  ==========================================================
  D          Peregrine falcon  ==========================================================
  D              Saker falcon  ==========================================================
  D               Rock pigeon  ==========================================================
B D        American alligator  ==========================================================
B D                   Opossum  ==========================================================
B D            Naked mole-rat  ==========================================================
B D                    Gibbon  ----------------------------------------------------------
B D                   Megabat  ==========================================================

Inserts between block 8 and 9 in window
B D                 Squirrel 21bp
B D          Chinese hamster 89bp
              Golden hamster 90bp
B D                    Mouse 39bp
B D                      Rat 39bp

Alignment block 9 of 129 in window, 33893387 - 33893405, 19 bps 
B D                     Human  gg----------a--------------------ggtg-----------gg--------------------
B D                     Chimp  gg----------a--------------------ggtg-----------gg--------------------
B D                   Gorilla  gg----------a--------------------ggtg-----------gg--------------------
B D                 Orangutan  gg----------a--------------------gatg-----------gg--------------------
B D                    Rhesus  gg----------a--------------------ggtg-----------gg--------------------
B D       Crab-eating macaque  gg----------a--------------------ggtg-----------gg--------------------
B D                    Baboon  gg----------a--------------------ggtg-----------gg--------------------
B D              Green monkey  ga----------a--------------------ggtg-----------gg--------------------
B D                  Marmoset  gg----------a--------------------agtg-----------gg--------------------
B D           Squirrel monkey  gg----------a--------------------ggtg-----------gg--------------------
B D                  Bushbaby  ag----------a--------------------cgcg-----------gg--------------------
           Chinese tree shrew  gg----------g--------------------ggtg-----------ga--------------------
B D                  Squirrel  gg----------a--------------------ggtg-----------gg--------------------
B D                    Rabbit  gg----------a--------------------gccg-----------g---------------------
B D                      Pika  gg----------a--------------------gctg-----------gg--------------------
B D                       Pig  ga----------gtgtcggctgccggtcgcgtcgccc-----------gt--------------------
B D                    Alpaca  cg----------a--------------------cgta-----------gg--------------------
               Bactrian camel  cg----------a--------------------cgta-----------gg--------------------
B D                   Dolphin  gg----------a---------------ccatccacc-----------tg--------------------
                 Killer whale  gg----------a---------------ccatccacc-----------tg--------------------
             Tibetan antelope  ag----------g---------------gcatgccgg-----------ga--------------------
B D                       Cow  ag----------g---------------gcatgctgg-----------ga--------------------
B D                     Sheep  ag----------g---------------gcatgccgg-----------ga--------------------
                Domestic goat  ag----------g---------------gcatgccgg-----------ga--------------------
B D                     Horse  gg----------a--------------------gccc---------------------------------
B D          White rhinoceros  gg----------a--------------------ggtcgtcatgcccttgg--------------------
B D                       Cat  gggctgtggctta--------------------ggcg-----------gg--------------------
B D                       Dog  ga----------a--------------------ggcg---------gagg--------------------
B D                   Ferret   gg----------a--------------------ggtg-----------cg--------------------
               Pacific walrus  ca----------a--------------------ggtg-----------gg--------------------
                 Weddell seal  ga----------a--------------------gctg-----------gg--------------------
             Black flying-fox  gg----------a--------------------agtg-----------gg--------------------
B D                  Hedgehog  gg----------a------------------ctcgcg-----------gg--------------------
B D                     Shrew  gg----------a-----------------------------------gg--------------------
              Star-nosed mole  gg----------t-----------------------------------gg--------------------
B D                  Elephant  ga----------a--------------------ggtg-----------gacctttgagcaaaatacaggg
          Cape elephant shrew  ga----------a--------------------agtg-----------gatctttgaacaaaatacaggg
B D                   Manatee  ga----------a--------------------ggtg-----------gacctctgagcaaaacacaggg
             Cape golden mole  ga----------a--------------------gatg-----------aacatttgaacgaaacacggct
B D                    Tenrec  gc----------a--------------------gggg-----------ggcgtttgaacaaaacacagac
                     Aardvark  ga----------a--------------------ggtg-----------gacctgtgaacaaaacataagg
      Lesser Egyptian jerboa  ======================================================================
B D                Guinea pig  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
                Prairie vole  ======================================================================
B D           Chinese hamster  ======================================================================
B D                     Mouse  ======================================================================
              Golden hamster  ======================================================================
B D                       Rat  ======================================================================
B D                     Panda  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
B D                 Armadillo  ======================================================================
B D                    Lizard  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Gibbon  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================

                        Human  -ctgt-------------------------------gcctca
                        Chimp  -ctgt-------------------------------gcctca
                      Gorilla  -ctgt-------------------------------gcctca
                    Orangutan  -ctgt-------------------------------gcctca
                       Rhesus  -ctgt-------------------------------gcctca
          Crab-eating macaque  -ctgt-------------------------------gcctca
                       Baboon  -ctgt-------------------------------gcctca
                 Green monkey  -ctgt-------------------------------gcctca
                     Marmoset  -ctgg-------------------------------gcctca
              Squirrel monkey  -ccgg-------------------------------gcctcg
                     Bushbaby  -ctgt-------------------------------gcctcc
           Chinese tree shrew  -c----------------------------------gcttga
                     Squirrel  -ctgt-------------------------------gccttt
                       Rabbit  ------------------------------------------
                         Pika  -catt-------------------------------gtctct
                          Pig  -ttgt-------------------------------gccccg
                       Alpaca  -ctgt-------------------------------gccctc
               Bactrian camel  -ctgt-------------------------------gccctc
                      Dolphin  -ctat-------------------------------gccctc
                 Killer whale  -ctat-------------------------------gccctc
             Tibetan antelope  -ctaa-------------------------------agccgg
                          Cow  -ctaa-------------------------------agccgg
                        Sheep  -ctaa-------------------------------agctgg
                Domestic goat  -ctaa-------------------------------agccgg
                        Horse  ------------------------------------------
             White rhinoceros  -ctgc---ccgcctctgcgtcttcagtcctgctgctgccagg
                          Cat  -ttgttgacccctgtcgc------------------gctgct
                          Dog  -ctgg-------------------------------gacaaa
                      Ferret   -ctgg---ccgctgtggc------------------gctgag
               Pacific walrus  -ctgg---ccgctgtcgc------------------gctgcg
                 Weddell seal  -ctgg---ccgctgtcgc------------------gctccg
             Black flying-fox  -ctgt-------------------------------gccctg
                     Hedgehog  -ttgc-------------------------------ggggag
                        Shrew  -tcgc-------------------------------tggaac
              Star-nosed mole  -gcac-------------------------------agcaag
                     Elephant  cctgc-------------------------------ggtca-
          Cape elephant shrew  cctga-------------------------------ggcca-
                      Manatee  cctgc-------------------------------ggtcc-
             Cape golden mole  cctgt-------------------------------gtcca-
                       Tenrec  cctgc-------------------------------agcca-
                     Aardvark  cctgc-------------------------------agtga-
       Lesser Egyptian jerboa  ==========================================
                   Guinea pig  ==========================================
             Brush-tailed rat  ==========================================
                   Chinchilla  ==========================================
                 Prairie vole  ==========================================
              Chinese hamster  ==========================================
                        Mouse  ==========================================
               Golden hamster  ==========================================
                          Rat  ==========================================
                        Panda  ==========================================
                Big brown bat  ==========================================
                     Microbat  ==========================================
         David's myotis (bat)  ==========================================
                    Armadillo  ==========================================
                       Lizard  ==========================================
     Chinese softshell turtle  ==========================================
               Painted turtle  ==========================================
              Green seaturtle  ==========================================
                       Turkey  ==========================================
                      Chicken  ==========================================
                 Mallard duck  ==========================================
                       Parrot  ==========================================
                   Budgerigar  ==========================================
           Tibetan ground jay  ==========================================
                  Zebra finch  ==========================================
          Medium ground finch  ==========================================
       White-throated sparrow  ==========================================
          Collared flycatcher  ==========================================
             Peregrine falcon  ==========================================
                 Saker falcon  ==========================================
                  Rock pigeon  ==========================================
           American alligator  ==========================================
                      Opossum  ==========================================
               Naked mole-rat  ==========================================
                       Gibbon  ------------------------------------------
                      Megabat  ==========================================

Inserts between block 9 and 10 in window
B D                 Squirrel 58bp
B D                   Rabbit 4bp
B D                     Pika 16bp
B D                    Horse 60bp
B D                 Hedgehog 3bp
B D                    Shrew 3bp
             Star-nosed mole 3bp

Alignment block 10 of 129 in window, 33893406 - 33893406, 1 bps 
B D                     Human  -g
B D                     Chimp  -g
B D                   Gorilla  -g
B D                 Orangutan  -g
B D                    Rhesus  -g
B D       Crab-eating macaque  -g
B D                    Baboon  -g
B D              Green monkey  -g
B D                  Marmoset  -g
B D           Squirrel monkey  -g
B D                  Bushbaby  -g
           Chinese tree shrew  -a
B D                  Squirrel  -g
                 Prairie vole  -g
B D                     Mouse  -g
B D                       Rat  -g
B D                    Rabbit  -g
B D                      Pika  -g
B D                       Pig  -g
B D                    Alpaca  -g
               Bactrian camel  -g
B D                   Dolphin  -g
                 Killer whale  -g
             Tibetan antelope  -g
B D                       Cow  -g
B D                     Sheep  -g
                Domestic goat  -g
B D          White rhinoceros  -a
B D                       Cat  -g
B D                       Dog  -a
B D                   Ferret   -g
               Pacific walrus  -g
                 Weddell seal  -g
             Black flying-fox  -g
B D                  Elephant  t-
          Cape elephant shrew  a-
B D                   Manatee  t-
             Cape golden mole  t-
B D                    Tenrec  t-
                     Aardvark  t-
B D                     Shrew  ==
      Lesser Egyptian jerboa  ==
B D                  Hedgehog  ==
B D                Guinea pig  ==
            Brush-tailed rat  ==
                  Chinchilla  ==
B D           Chinese hamster  ==
              Golden hamster  ==
             Star-nosed mole  ==
B D                     Panda  ==
               Big brown bat  ==
B D                  Microbat  ==
        David's myotis (bat)  ==
B D                 Armadillo  ==
B D                    Lizard  ==
  D  Chinese softshell turtle  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D                    Turkey  ==
B D                   Chicken  ==
  D              Mallard duck  ==
  D                    Parrot  ==
B D                Budgerigar  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
B D       Medium ground finch  ==
  D    White-throated sparrow  ==
  D       Collared flycatcher  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D               Rock pigeon  ==
B D        American alligator  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
B D                    Gibbon  --
B D                   Megabat  ==
B D                     Horse  ==

Inserts between block 10 and 11 in window
B D                 Squirrel 53bp
B D                    Mouse 36bp
B D                      Rat 34bp
B D                   Rabbit 6bp
B D                     Pika 6bp
B D                      Pig 98bp
B D                   Alpaca 152bp
              Bactrian camel 180bp
B D                  Dolphin 124bp
                Killer whale 124bp
            Tibetan antelope 6bp
B D                      Cow 6bp
B D                    Sheep 6bp
               Domestic goat 6bp
B D         White rhinoceros 92bp
B D                      Cat 124bp
B D                      Dog 31bp
B D                  Ferret  128bp
              Pacific walrus 129bp
                Weddell seal 124bp
            Black flying-fox 168bp

Alignment block 11 of 129 in window, 33893407 - 33893415, 9 bps 
B D                     Human  -------cagggtcgc
B D                     Chimp  -------cagggtcgc
B D                   Gorilla  -------cagggtcgc
B D                 Orangutan  -------cagggtcgc
B D                    Rhesus  -------cagggtcgc
B D       Crab-eating macaque  -------cagggtcgc
B D                    Baboon  -------cagggtcgc
B D              Green monkey  -------cagggtcgc
B D                  Marmoset  -------cagggttgc
B D           Squirrel monkey  -------cagggttgc
B D                  Bushbaby  -------tagggtcgc
           Chinese tree shrew  -------caaaag-ac
B D                  Squirrel  -------taggggag-
                 Prairie vole  -------cagggcag-
B D           Chinese hamster  -------cagggcag-
               Golden hamster  -------cagggcag-
B D                     Mouse  -------caagacag-
B D                       Rat  -------caggatag-
B D                    Rabbit  -------ccgggcag-
B D                      Pika  -------ttgggcct-
B D                  Elephant  ctgagtgtagggg---
          Cape elephant shrew  ctgagtataaagg---
B D                   Manatee  ctgagcgtaggga---
             Cape golden mole  ctgagtttaggga---
B D                    Tenrec  cagagtgtaggcg---
                     Aardvark  ctgagtgtagggg---
B D                     Shrew  ================
      Lesser Egyptian jerboa  ================
B D                  Hedgehog  ================
B D                Guinea pig  ================
            Brush-tailed rat  ================
                  Chinchilla  ================
             Star-nosed mole  ================
            Black flying-fox  ================
                Weddell seal  ================
                Killer whale  ================
B D                     Panda  ================
               Big brown bat  ================
B D                       Cow  ================
               Domestic goat  ================
B D                     Sheep  ================
            Tibetan antelope  ================
B D                  Microbat  ================
        David's myotis (bat)  ================
B D                 Armadillo  ================
B D                       Dog  ================
B D                   Ferret   ================
B D                       Cat  ================
              Pacific walrus  ================
B D                   Dolphin  ================
B D                    Lizard  ================
  D  Chinese softshell turtle  ================
  D            Painted turtle  ================
  D           Green seaturtle  ================
B D                    Turkey  ================
B D                   Chicken  ================
  D              Mallard duck  ================
  D                    Parrot  ================
B D                Budgerigar  ================
          Tibetan ground jay  ================
B D               Zebra finch  ================
B D       Medium ground finch  ================
  D    White-throated sparrow  ================
  D       Collared flycatcher  ================
  D          Peregrine falcon  ================
  D              Saker falcon  ================
  D               Rock pigeon  ================
B D        American alligator  ================
B D                   Opossum  ================
B D            Naked mole-rat  ================
              Bactrian camel  ================
B D                    Gibbon  ----------------
B D                   Megabat  ================
B D                       Pig  ================
B D          White rhinoceros  ================
B D                     Horse  ================
B D                    Alpaca  ================

Alignment block 12 of 129 in window, 33893416 - 33893417, 2 bps 
B D                     Human  ag
B D                     Chimp  ag
B D                   Gorilla  ag
B D                 Orangutan  ag
B D                    Rhesus  ag
B D       Crab-eating macaque  ag
B D                    Baboon  ag
B D              Green monkey  ag
B D                  Marmoset  ag
B D           Squirrel monkey  ag
B D                  Bushbaby  ag
           Chinese tree shrew  ag
B D                       Pig  gg
B D                    Alpaca  ag
               Bactrian camel  ag
B D                   Dolphin  ag
                 Killer whale  ag
             Tibetan antelope  gg
B D                       Cow  gg
B D                     Sheep  gg
                Domestic goat  gg
B D                     Horse  ag
B D          White rhinoceros  ag
B D                       Cat  ag
B D                       Dog  ag
B D                   Ferret   ag
B D                     Panda  ag
               Pacific walrus  ag
                 Weddell seal  ag
             Black flying-fox  ag
B D                  Hedgehog  ag
B D                     Shrew  gg
              Star-nosed mole  gg
B D                  Elephant  ag
          Cape elephant shrew  tg
B D                   Manatee  ag
             Cape golden mole  ag
B D                    Tenrec  cc
                     Aardvark  ag
      Lesser Egyptian jerboa  ==
B D                Guinea pig  ==
            Brush-tailed rat  ==
                  Chinchilla  ==
                Prairie vole  --
B D           Chinese hamster  --
B D                     Mouse  --
              Golden hamster  --
B D                      Pika  --
B D                       Rat  --
               Big brown bat  ==
B D                  Microbat  ==
        David's myotis (bat)  ==
B D                 Armadillo  ==
B D                  Squirrel  --
B D                    Lizard  ==
  D  Chinese softshell turtle  ==
  D            Painted turtle  ==
  D           Green seaturtle  ==
B D                    Turkey  ==
B D                   Chicken  ==
  D              Mallard duck  ==
  D                    Parrot  ==
B D                Budgerigar  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
B D       Medium ground finch  ==
  D    White-throated sparrow  ==
  D       Collared flycatcher  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D               Rock pigeon  ==
B D        American alligator  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
B D                    Rabbit  --
B D                    Gibbon  --
B D                   Megabat  ==

Inserts between block 12 and 13 in window
B D                 Bushbaby 145bp
B D                 Hedgehog 2bp
             Star-nosed mole 30bp

Alignment block 13 of 129 in window, 33893418 - 33893445, 28 bps 
B D                     Human  gcat-----tg-cagg--------------------------ggcat-----------cac---------
B D                     Chimp  gcat-----tg-cagg--------------------------ggcat-----------cac---------
B D                   Gorilla  gcat-----tg-cagg--------------------------ggcat-----------cac---------
B D                 Orangutan  gcat-----tg-cagg--------------------------ggcat-----------cac---------
B D                    Rhesus  gcat-----tg-cagg--------------------------ggcat-----------cac---------
B D       Crab-eating macaque  gcat-----tg-cagg--------------------------ggcat-----------cac---------
B D                    Baboon  gcat-----tg-cagg--------------------------ggcat-----------cac---------
B D              Green monkey  gcat-----tg-cagg--------------------------ggcat-----------cac---------
B D                  Marmoset  gcat-----tg-cggg--------------------------agcat-----------cac---------
B D           Squirrel monkey  gcgt-----tg-cagg--------------------------agcat-----------cac---------
B D                  Bushbaby  gcag-----gg-cggg--------------------------ggccc-----------cac---------
           Chinese tree shrew  ggct-----tg-caggtgtctgggtgtcgggta---------ggcat---------tgccc---------
B D                  Squirrel  gcat-----cg-cagg--------------------------gtcat-----------cgc---------
                 Prairie vole  acat-----tg-gagt--------------------------accat-----------cac---------
B D           Chinese hamster  acgt-----tg-cagg--------------------------accgt-----------cag---------
               Golden hamster  acgt-----tg-cagg--------------------------accgt-----------cag---------
B D                     Mouse  acaa-----tg-cagg--------------------------gccat-----------cacgatagatgg
B D                       Rat  acat-----tg-cagg--------------------------gacat-----------cat---------
B D                    Rabbit  ccat-----tg-cagg--------------------------ggctt-----------ctc---------
B D                      Pika  ggat-----t--cgaa--------------------------ggctg-----------gac---------
B D                       Pig  gcttctgagtg-tagg--------------ggaggcgttcagggcac-----------caa---------
B D                    Alpaca  gcat-----ct-cagg--------------------------ggcat-----------caa---------
               Bactrian camel  gcat-----ct-cagg--------------------------ggcat-----------caa---------
B D                   Dolphin  gcat-----tg-cagg--------------------------ggcgt-----------caa---------
                 Killer whale  gcat-----tg-cagg--------------------------ggcgt-----------caa---------
             Tibetan antelope  gcttctgggtg-gagg--------------gta---------ggcat-----------caa---------
B D                       Cow  gcttctgagtg-gagg--------------gta---------ggcat-----------caa---------
B D                     Sheep  gcttctgagtg-gagg--------------gta---------ggcat-----------caa---------
                Domestic goat  gcttctgagtg-gagg--------------gta---------ggcat-----------caa---------
B D                     Horse  gcat-----tt-cagg--------------------------ggcgt-----------cac---------
B D          White rhinoceros  gcat-----tg-cagg--------------------------gacat-----------caa---------
B D                       Cat  gcct-----gg-cagg--------------------------ggcat-----------caa---------
B D                       Dog  gcat-----tg-cagg--------------------------ggctt-----------caa---------
B D                   Ferret   gcat-----tg-cagg--------------------------gcggg-----------caa---------
B D                     Panda  gcat-----tg-cagg--------------------------ggcag-----------gga---------
               Pacific walrus  ggat-----tg-cggg--------------------------ggcag-----------caa---------
                 Weddell seal  gcat-----tg-cagg--------------------------ggcag-----------caa---------
             Black flying-fox  gcat-----tt-cagg--------------------------ggcat-----------cag---------
B D                  Hedgehog  gcgc----------gg--------------------------gatgc-----------ccc---------
B D                     Shrew  gcag----------gg--------------------------g---------------------------
              Star-nosed mole  gcaa----------gg--------------------------ggtac-----------caa---------
B D                  Elephant  cctt----gca-ggga--------------------------gatgg-----------------------
          Cape elephant shrew  tcct-----tg-ggga--------------------------ggtgggggtgaggcgtcaa---------
B D                   Manatee  gcct-----tg-cagg--------------------------ggtat-----------caa---------
             Cape golden mole  gcct-----tactggg--------------------------ggtaa----------tcaa---------
B D                    Tenrec  gctt-----ta-----------------------------------------------------------
                     Aardvark  gcct-----cg-cagg--------------------------gggat-----------caa---------
      Lesser Egyptian jerboa  ======================================================================
B D                Guinea pig  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
B D                 Armadillo  ======================================================================
B D                    Lizard  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Gibbon  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================

                        Human  ----g------ttagtcaga
                        Chimp  ----g------ttagtcaga
                      Gorilla  ----g------ttagtcaga
                    Orangutan  ----g------ttagtcaga
                       Rhesus  ----g------atagtcaga
          Crab-eating macaque  ----g------atagtcaga
                       Baboon  ----g------atagtcaga
                 Green monkey  ----g------atagtcaga
                     Marmoset  ----g------ttcatcaga
              Squirrel monkey  ----g------ttcattaga
                     Bushbaby  ----g------ttagatgga
           Chinese tree shrew  ----g------actgttagg
                     Squirrel  ----c------tta----ga
                 Prairie vole  ----g------atagatgga
              Chinese hamster  ----g------atagatgga
               Golden hamster  ----g------atagatgga
                        Mouse  agcag------atagatgga
                          Rat  ----g------atagatgga
                       Rabbit  ----t------ttaaccgga
                         Pika  ----ttgggtgttaaacgga
                          Pig  ----g------tttgatgga
                       Alpaca  ----g------ttggatgga
               Bactrian camel  ----g------ttggatgga
                      Dolphin  ----g------ttagatgga
                 Killer whale  ----g------ttagatgga
             Tibetan antelope  ----g------ttagatgga
                          Cow  ----g------ttagatgga
                        Sheep  ----g------ttagatgga
                Domestic goat  ----g------ttagatgga
                        Horse  ----g------ttagatgga
             White rhinoceros  ----g------ttagaggga
                          Cat  ----g------ttagatggt
                          Dog  ----g------tgggataga
                      Ferret   ----g------ctggatgca
                        Panda  ----c------ttggatgga
               Pacific walrus  ----g------ttagatgga
                 Weddell seal  ----g------ttaggtgga
             Black flying-fox  ----g------ttagatgga
                     Hedgehog  ----g------tgagatggg
                        Shrew  ----g------gtggacggg
              Star-nosed mole  ----g------ttagacagg
                     Elephant  ----c------ttagttgga
          Cape elephant shrew  ----c------gtagattga
                      Manatee  ----c------ttagatgga
             Cape golden mole  ----c------gtaaatgga
                       Tenrec  -------------gaagggg
                     Aardvark  ----c------ttcgatgga
       Lesser Egyptian jerboa  ====================
                   Guinea pig  ====================
             Brush-tailed rat  ====================
                   Chinchilla  ====================
                Big brown bat  ====================
                     Microbat  ====================
         David's myotis (bat)  ====================
                    Armadillo  ====================
                       Lizard  ====================
     Chinese softshell turtle  ====================
               Painted turtle  ====================
              Green seaturtle  ====================
                       Turkey  ====================
                      Chicken  ====================
                 Mallard duck  ====================
                       Parrot  ====================
                   Budgerigar  ====================
           Tibetan ground jay  ====================
                  Zebra finch  ====================
          Medium ground finch  ====================
       White-throated sparrow  ====================
          Collared flycatcher  ====================
             Peregrine falcon  ====================
                 Saker falcon  ====================
                  Rock pigeon  ====================
           American alligator  ====================
                      Opossum  ====================
               Naked mole-rat  ====================
                       Gibbon  --------------------
                      Megabat  ====================

Alignment block 14 of 129 in window, 33893446 - 33893455, 10 bps 
B D                     Human  gcatgt-tgg---c
B D                     Chimp  gcatgt-tgg---c
B D                   Gorilla  gcatgt-tgg---c
B D                 Orangutan  gcatgt-tgg---c
B D                    Rhesus  gcatgt-tgg---c
B D       Crab-eating macaque  gcatgt-tgg---c
B D                    Baboon  gcatgc-tgg---c
B D              Green monkey  gcatgt-tgg---c
B D                  Marmoset  gcatgt-tgg---c
B D           Squirrel monkey  gcatgt-tgg---c
B D                  Bushbaby  gtgagt-tgg---a
           Chinese tree shrew  taatac-ctg----
B D                  Squirrel  gtatgt-tgg---g
                 Prairie vole  gtatgt-tgg---g
B D           Chinese hamster  gtatgt-tgg---g
               Golden hamster  gtatgt-tgg---g
B D                     Mouse  gcatgt-cag---g
B D                       Rat  gtatgt-cag---g
B D                    Rabbit  ggacct-ggg----
B D                      Pika  gggctt-ggg----
B D                       Pig  gtgtgt-tgg---g
B D                    Alpaca  gtatgt-tag---g
               Bactrian camel  gtatgt-tag---g
B D                   Dolphin  gtatgt-tgt---g
                 Killer whale  gtatgt-tgt---g
             Tibetan antelope  gtatgt-tgttggg
B D                       Cow  gtatgt-tgttggg
B D                     Sheep  gtatgt-tgttggg
                Domestic goat  gtatgt-tgttggg
B D                     Horse  gtatgt-tgg---g
B D          White rhinoceros  gtatgg-cgg---g
B D                       Cat  gtatgt-tga---g
B D                       Dog  ggatgt-tgg---g
B D                   Ferret   gtatgt-tgg---g
B D                     Panda  gtatgc-tgg---g
               Pacific walrus  gtatgt-tgg---g
                 Weddell seal  gtatgt-tgg---g
             Black flying-fox  gtatgt-tgg---g
B D                     Shrew  gcacgc-g-----g
              Star-nosed mole  gtgtat-t-----g
B D                  Elephant  gtatgt-tga---g
          Cape elephant shrew  gtatgt-tgg---g
B D                   Manatee  gtatgc-tga---g
             Cape golden mole  gtatgt-tgg---g
B D                    Tenrec  gtgcgcatta---g
                     Aardvark  gtatgt-tgg---g
B D                 Armadillo  gcacgt-cgg---g
      Lesser Egyptian jerboa  ==============
B D                  Hedgehog  --------------
B D                Guinea pig  ==============
            Brush-tailed rat  ==============
                  Chinchilla  ==============
               Big brown bat  ==============
B D                  Microbat  ==============
        David's myotis (bat)  ==============
B D                    Lizard  ==============
  D  Chinese softshell turtle  ==============
  D            Painted turtle  ==============
  D           Green seaturtle  ==============
B D                    Turkey  ==============
B D                   Chicken  ==============
  D              Mallard duck  ==============
  D                    Parrot  ==============
B D                Budgerigar  ==============
          Tibetan ground jay  ==============
B D               Zebra finch  ==============
B D       Medium ground finch  ==============
  D    White-throated sparrow  ==============
  D       Collared flycatcher  ==============
  D          Peregrine falcon  ==============
  D              Saker falcon  ==============
  D               Rock pigeon  ==============
B D        American alligator  ==============
B D                   Opossum  ==============
B D            Naked mole-rat  ==============
B D                    Gibbon  --------------
B D                   Megabat  ==============

Alignment block 15 of 129 in window, 33893456 - 33893530, 75 bps 
B D                     Human  atgga----ggccactc----agcccagggag----g-caggac-tcacgcccc-aa--atgga-aggca
B D                     Chimp  atgga----ggccactc----agcccagggag----g-caggac-tcacgcccc-aa--atgga-aggca
B D                   Gorilla  atgga----ggccactc----agcccagggag----g-caggac-tcacgcccc-aa--atgga-aggca
B D                 Orangutan  atgga----ggccgctc----agcccagggag----g-caggat-tcactcccc-aa--atgga-aggca
B D                    Rhesus  atgga----ggccgctc----agcccagggag----g-caggat-tcaggcccc-aa--gtgga-aggca
B D       Crab-eating macaque  atgga----ggccgctc----agcccagggag----g-caggat-tcaggcccc-aa--gtgga-aggca
B D                    Baboon  atgga----ggccgctc----agcccagggag----g-caggat-tcaggcccc-aa--atgga-aggca
B D              Green monkey  atgga----ggtcgctc----agcccagggag----g-caggat-tcaggcccc-aa--atgga-aggca
B D                  Marmoset  atgga----ggccgctc----ggcccagggag----g-caggat-ttacgcccc-aa--atgga-aagca
B D           Squirrel monkey  atgga----ggccgctc----agcccagggag----g-caggat-ttaggcccc-aa--atgga-aagca
B D                  Bushbaby  aagga----ggccactc-----gcccgagggt----g-caggat-ttgggtcct-aa--at--a-aggca
           Chinese tree shrew  gggga----ggccgctc----accccagggaa----g-cagaat-gtgggcccc-aa--ataga-aagca
B D                  Squirrel  gtgga----aattg-tg-----gcccagagag----g-cggggt-ttgggcccc-aa--atgga-aggca
       Lesser Egyptian jerboa  atgga----ggccgctc-----acccagtgat----gttaggac-ttaggtccc--a--aatga-aggca
                 Prairie vole  gtgga----ggcctttc-----acccagggatgtagg-taggat-ctgggtccc-----atccc-aggca
B D           Chinese hamster  gtgga----gacttttc-----acccagggat----g-taggat-ctgggtcct-----gtccg-gggca
               Golden hamster  gtgca----gacttttc-----acccagggat----g-taggat-ctgggtccc-----gtccc-gggca
B D                     Mouse  gtgga----ggccgctc-----acccaaggat----g-tatggt-ctggg----------tctc-cgaca
B D                       Rat  gtgga----ggcccctc-----acccagggat----g-tatggt-ctggg----------tctg-ggaca
B D                    Rabbit  gtggg----ggctg-ct-----ccccaggggt----g-cagggt-ctggccact-tgctactga-aagca
B D                      Pika  gtgggactcagct---t-----gtccaggcat----g-ctggct-ttgggcccc-aa--acagagaagca
B D                       Pig  gtgaa----ggccattc----acccca-aggt----a-caggat-ttgggctcc-ca--atgga-aagca
B D                    Alpaca  gtgga----ggctgctt----accccagggat----g-caggat-ttgggcccc-aa--atgga-aagca
               Bactrian camel  gtgga----ggccgctt----accccagggat----g-caggat-ttgggcccc-aa--atgga-aagca
B D                   Dolphin  gtgga----ggccgttc----accacagaggt----g-caggat-ttggacccc-aa--atgga-aagca
                 Killer whale  gtgga----ggccgctc----accacagaggt----g-caggat-ttggacccc-aa--atgga-aagca
             Tibetan antelope  gtgga----ggctgccc----gccacaggggt----g-caggat-ctggggctc-aa--aagaa-aggca
B D                       Cow  gcgga----gcctgctc----gccacaggggt----g-caggat-ctggggctc-aa--aagaa-aggca
B D                     Sheep  gtgga----ggctgccc----gccacaggggt----g-caggat-ctgggcctc-aa--aagaa-aggca
                Domestic goat  gtaga----ggctgccc----gccacaggggt----g-caggat-ctggggctc--------aa-aggca
B D                     Horse  gtgga----ggctgctc----accccggggat----g-caggat-ttgggcccc-aa--atgga-ggaca
B D          White rhinoceros  gtgga----ggccgctc----accccagggat----g-caggac-ttgggcccc-aa--acgta-aggca
B D                       Cat  gtgga----ggccgctt----actccagggat----g-caggat-tcggctccc-aa--atgga-aagca
B D                       Dog  ctgga----ggccgccc----cgcccaggggt----g-caggat-ttgggcccc-aa--atgga-aggca
B D                   Ferret   aggga----agccgctccccgcccccgggggt----g-cagcat-ttggacccc-aa--atgga-aggca
B D                     Panda  atgga----ggccgcgc----accccggaggt----g-cagcat-ttgggcccc-aa--ataga-aggca
               Pacific walrus  atgga----ggccgctc----accccgggggt----g-cagcat-ttgggcccc-aa--atgga-aggca
                 Weddell seal  atgga----ggccgctc----accccgggggt----g-cagcat-ttgggcccc-aa--atgga-aggca
             Black flying-fox  gtgga----ggctgctc----tgcccagggat----a-caagat-ttgggtcac-a--------------
B D                  Hedgehog  ----a----gccc-agc----atcccagagat----g-cagggt-ttgggtccc-ga--gtgga-tggca
B D                     Shrew  gcgga----gtccgtgc----accccagggag----g-cagggt-ttgggccac----------------
              Star-nosed mole  ggtca----ctcc-tgc----a-cccagggat----g-caggat-ttggacccctta--cagaa-aggca
B D                  Elephant  gtgga----ggccactc----agctcagggat----g-tagtat-ttgggttcc-aa--atgga-aggca
          Cape elephant shrew  gtgga----agctgttt----acctcagggat----a-cggaat-ttgggattt-ga--gtaga-aggtc
B D                   Manatee  gtgga----ggccactc----tccccagggat----g-ctggat-ttgggttcc-aa--atgga-aggca
             Cape golden mole  gtgga----ggctgctc----accccagaggc----t-caggat-ttgggttcc-aa--atgga-atgca
B D                    Tenrec  ctggg----gg----------------------------aggatattgggctcc-ca--atgaa-agaca
                     Aardvark  gtgga----ggccgttc----accccaagaat----g-caggat-ttcagttcc-aa--ctgga-tggca
B D                 Armadillo  gcgga----cgccgctc----cgcgc----tc----c-cgggcc-gggggcccc-at--ggggg-aggcg
B D                Guinea pig  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
B D                    Lizard  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Gibbon  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================

                        Human  cg----cag----tc-gtgcct---gc-c-------------ta------ga--------gg-c
                        Chimp  cg----cag----tc-gtgcct---gc-c-------------ta------ga--------gg-c
                      Gorilla  cg----cag----tc-gtgcct---gc-c-------------ta------ga--------gg-c
                    Orangutan  gg----cag----tc-gtgccc---ac-c-------------ta------ga--------gg-c
                       Rhesus  tg----cag----tc-gtgccc---gc-c-------------ta------ga--------gg-c
          Crab-eating macaque  tg----cag----tc-gtgccc---gc-c-------------ta------ga--------gg-c
                       Baboon  tg----cag----tc-gtgccc---gc-c-------------ta------ga--------gg-c
                 Green monkey  tg----cag----tc-gtgccc---gc-c-------------ta------ga--------gg-c
                     Marmoset  cg----cag----tg-gtgccc---ac-c-------------ta------ga--------gg-t
              Squirrel monkey  ca----cgg----tg-gtgccc---ac-c-------------ta------ga--------gg-c
                     Bushbaby  ag----caa----cc-gtgtct---cc-c-------------caccgtggga--------gg-t
           Chinese tree shrew  ag----caa----tc-cttgct---cc-c-------------ca------aa--------ggac
                     Squirrel  aa----caa----ttgggtgcccccgt-c---------------------aa--------gg-t
       Lesser Egyptian jerboa  cg----cgg----ct-gttccccctga-c-------------cc------ga--------ga-t
                 Prairie vole  ag----cagtcaccc-attctccttgc-c-------------ca------aa--------gg-c
              Chinese hamster  ag----cag----cc-actcccctcgc-c-------------ca------aa--------gg-t
               Golden hamster  ag----cag----cc-actccccttgc-c-------------ca--------------------
                        Mouse  ag----cat----tc-gctctctttgc-c-------------ca------aa--------gg-t
                          Rat  ag----cat----tc-gctcccttggc-c-------------ca------aa--------gg-g
                       Rabbit  aggcgttat----gc-ct--------c-c------------acc------aa--------gc-a
                         Pika  aa----tat----gc-cccaccccagc-t------------ccc------aa--------gg-a
                          Pig  ag----caa----ct-gcgcccc--cc-ccacccccgccaccac------caccacaaacgg-t
                       Alpaca  ag----caa----ct-gtgccca--cc-tccccttctccctcta------tg--------gg-t
               Bactrian camel  ag----caa----ct-gtgccca--cc-tccccttctccctcta------tg--------gg-t
                      Dolphin  ag----caa----ct-gtacc----------------cctccaa------cg--------gg-t
                 Killer whale  ag----caa----ct-gtacc----------------cctccaa------cg--------gg-t
             Tibetan antelope  ag----cag----t----------------------------------------------gg-t
                          Cow  ag----cac----t----------------------------------------------gg-t
                        Sheep  ag----cag----t----------------------------------------------gg-t
                Domestic goat  ag----cag----t----------------------------------------------gg-t
                        Horse  ag----caa----ct-gcacccc--tc-c-------------cc------aa--------ga-t
             White rhinoceros  ag----caa----ct-gtgccgc--tc-c-------------cc------aa--------ga-c
                          Cat  ag----caa----ct-gtgcccc--ac-c------------ttc------ca--------gg-c
                          Dog  ag----caa----ct-gttcccc--ac-ccccg--------ccc------ca--------gg-t
                      Ferret   ag----cag----ct-gcgcccc--ac-t-------------cc------ca--------gg-t
                        Panda  gg----caa----ct-gtgtccc--ac-t------------ccc------ca--------gg-t
               Pacific walrus  ag----cca----ct-gtgcccc--ac-tcc----------ccc------cc--------gg-t
                 Weddell seal  ag----cca----ct-gtgcccc--ac-t-c----------ccc------ca--------gg-t
             Black flying-fox  ----------------------------------------------------------------
                     Hedgehog  ag----cta----tt-gtgctcc--tc-c-------------------------------cc-c
                        Shrew  ------------------gacgc--ct-c-------------------------------ca-g
              Star-nosed mole  ag----caa----ct-gtgaccc--cc-a-------------------------------ga-t
                     Elephant  ag----caa----ct-gtgccccaccc-c------------aga------aa--------gg-t
          Cape elephant shrew  ca----cag----ct-gtgcgctaacc-c------------aaa------aa--------gg-c
                      Manatee  ag----caa----ct-gtgccccagcc-c------------aga------aa--------gc-t
             Cape golden mole  ag----caa----ct-gtgccccacccac------------aaa------aa--------gg-t
                       Tenrec  ag----caa----cc-aggcccagac--c------------aga------aa--------gg-t
                     Aardvark  ag----cga----ct-gtgctccatcc-c------------aga------aa--------ga-t
                    Armadillo  ag----cag----ct-gtgccct-----c------------aga------ga--------gg-c
                   Guinea pig  ================================================================
             Brush-tailed rat  ================================================================
                   Chinchilla  ================================================================
                Big brown bat  ================================================================
                     Microbat  ================================================================
         David's myotis (bat)  ================================================================
                       Lizard  ================================================================
     Chinese softshell turtle  ================================================================
               Painted turtle  ================================================================
              Green seaturtle  ================================================================
                       Turkey  ================================================================
                      Chicken  ================================================================
                 Mallard duck  ================================================================
                       Parrot  ================================================================
                   Budgerigar  ================================================================
           Tibetan ground jay  ================================================================
                  Zebra finch  ================================================================
          Medium ground finch  ================================================================
       White-throated sparrow  ================================================================
          Collared flycatcher  ================================================================
             Peregrine falcon  ================================================================
                 Saker falcon  ================================================================
                  Rock pigeon  ================================================================
           American alligator  ================================================================
                      Opossum  ================================================================
               Naked mole-rat  ================================================================
                       Gibbon  ----------------------------------------------------------------
                      Megabat  ================================================================

Inserts between block 15 and 16 in window
B D                Armadillo 22bp

Alignment block 16 of 129 in window, 33893531 - 33893552, 22 bps 
B D                     Human  g-ttaatatt---gtgccacacttt--g-----------
B D                     Chimp  g-ttaatatt---gtgccacacttt--g-----------
B D                   Gorilla  g-ttaatatt---gtgccacacttt--g-----------
B D                 Orangutan  g-ttaatatt---gtgccacacttt--g-----------
B D                    Rhesus  g-ttaatagt---gtgccacagttt--g-----------
B D       Crab-eating macaque  g-ttaatagt---gtgccacagttt--g-----------
B D                    Baboon  g-ttaatagt---gtgccacagttt--g-----------
B D              Green monkey  g-ttaatagt---gtgccacagttt--g-----------
B D                  Marmoset  g-ttaatact---gggcaacacttt--g-----------
B D           Squirrel monkey  g-ttaatact---gggcaacacttt--g-----------
B D                  Bushbaby  g-ctaatatt---gcgggatacttt--g-----------
           Chinese tree shrew  c-ccgatact---gtgggatccttc--g-----------
B D                  Squirrel  g-ttgatatt---gtgagatacttt--g-----------
       Lesser Egyptian jerboa  g-cagatgtt---gtggaatacttg--g-----------
                 Prairie vole  a-ttaatact---gtgagatactct--g-----------
B D           Chinese hamster  a-ctaatcct---gtgagatgctct--g-----------
               Golden hamster  ---------------------ctct--g-----------
B D                     Mouse  g-tacatact---ttgagatactct--g-----------
B D                       Rat  a-ttaatact---gtgagatactct--g-----------
B D                    Rabbit  g-ttcgtact---gtgagatactgc--g-----------
B D                      Pika  g-ttcgtatt--agtgagaaactcc--a-----------
B D                       Pig  c-ctaatactggggtggaggaactc--t-----------
B D                    Alpaca  c-ataagatt---gtgggggagctt--t-----------
               Bactrian camel  c-ataacatt---gtgggggagctt--t-----------
B D                   Dolphin  c-ataacact---gtg-gggagctctgg-----------
                 Killer whale  c-ataacact---gtg-gggagctctgg-----------
             Tibetan antelope  c-gtaacatt---gtacaagagctc--a-----------
B D                       Cow  c-gtaacatt---gtaccagagctc--g-----------
B D                     Sheep  t-gtagcatt---gtacaagagctc--a-----------
                Domestic goat  t-gtaacatt---gtacaagagctc--a-----------
B D                     Horse  c-agaatgtt---gtgggggtattt--g-----------
B D          White rhinoceros  c-ctggtctt---gtagagatactc--g-----------
B D                       Cat  c-ctaatatt---gtcgggatactc--t-----------
B D                       Dog  c-ataatatt---gtctgggtactt--t-----------
B D                   Ferret   c-ataatact---ggccggatactt--t-----------
B D                     Panda  c-atgatatt---gttgcgatactt--t-----------
               Pacific walrus  c-ataatatt---gtctggatactt--t-----------
                 Weddell seal  c-ataatatt---gtctggatactt--t-----------
B D                  Hedgehog  c-caaaaaat---atg-gttttttt--t-----------
B D                     Shrew  t-gtggccg-----------aattt--t-----------
              Star-nosed mole  c-ataacagg---gag-gttactct--t-----------
B D                  Elephant  c-ttaatgtt---gt-tgggtacac--gggggtggggtg
          Cape elephant shrew  ctttaatatt---gt-tgagtacaa--a-----------
B D                   Manatee  c-ttactttt---gt-tgggtacgc--g------gggtg
             Cape golden mole  c-ttaatact---gttggggcgtag--g-----------
B D                    Tenrec  c-caaagatg---gtatggggggag--a--cacagggtg
                     Aardvark  c-ttaatatt---gt-tgggtagct--g----gggggcg
B D                Guinea pig  =======================================
            Brush-tailed rat  =======================================
                  Chinchilla  =======================================
            Black flying-fox  ---------------------------------------
               Big brown bat  =======================================
B D                  Microbat  =======================================
        David's myotis (bat)  =======================================
B D                 Armadillo  =======================================
B D                    Lizard  =======================================
  D  Chinese softshell turtle  =======================================
  D            Painted turtle  =======================================
  D           Green seaturtle  =======================================
B D                    Turkey  =======================================
B D                   Chicken  =======================================
  D              Mallard duck  =======================================
  D                    Parrot  =======================================
B D                Budgerigar  =======================================
          Tibetan ground jay  =======================================
B D               Zebra finch  =======================================
B D       Medium ground finch  =======================================
  D    White-throated sparrow  =======================================
  D       Collared flycatcher  =======================================
  D          Peregrine falcon  =======================================
  D              Saker falcon  =======================================
  D               Rock pigeon  =======================================
B D        American alligator  =======================================
B D                   Opossum  =======================================
B D            Naked mole-rat  =======================================
B D                    Gibbon  ---------------------------------------
B D                   Megabat  =======================================

Alignment block 17 of 129 in window, 33893553 - 33893580, 28 bps 
B D                     Human  ggggt----gagg------a-----tct----------ggcaactt--tatacct
B D                     Chimp  ggggt----gagg------a-----tct----------ggcaactt--tatacct
B D                   Gorilla  ggggt----gagg------a-----tct----------ggcaactt--tatacct
B D                 Orangutan  ggggt----gagg------a-----tct----------ggcaactt--tatactt
B D                    Rhesus  ggggt----gagg------a-----tct----------gacaactt--catacct
B D       Crab-eating macaque  ggggt----gagg------a-----tct----------gacaactt--catacct
B D                    Baboon  ggggt----gagg------a-----tct----------gacaactt--catacct
B D              Green monkey  ggggt----gagg------a-----tct----------gacaactt--cataccg
B D                  Marmoset  ggggt----gagg------a-----tct----------gacaattt--catgcct
B D           Squirrel monkey  ggggt----gagg------a-----tct----------gacaattt--catgcct
B D                  Bushbaby  gcggt---ggggg------g-----tct----------gccaacct--taaacct
           Chinese tree shrew  g-att----gggg------a-----tct---------------------------
B D                  Squirrel  ggagt----gggg-----at-----cct---------------------------
       Lesser Egyptian jerboa  ggggc----aggg------g-----cctagcaatctta-----------------
                 Prairie vole  ggaattggggggg------g-----ggt---------------------------
B D           Chinese hamster  gggat----gggg------t-----cct---------------------------
               Golden hamster  gggac--gagggg------t-----cct---------------------------
B D                     Mouse  ggaat----gg--------------------------------------------
B D                       Rat  tggat----gg--------------------------------------------
B D                    Rabbit  ggggt----gggg-----aa-----tct----------accaactt--tatggct
B D                      Pika  ggggt----ggag------c-----ttg----------agcagctt--gataact
B D                       Pig  ggaga----agat------a-----tct----------gctaactt--catctct
B D                    Alpaca  ggggt----gggg------a-----tct----------ggcaactt----tctct
               Bactrian camel  ggggt----gggg------a-----tct----------ggcaactt----tctct
B D                   Dolphin  ggggc----cggg------a-----tct----------gcaaactt--tatccct
                 Killer whale  ggggc----cggg------a-----tct----------gcaaactt--tatccct
             Tibetan antelope  ggggc----tggg------a-----cct----------gccaactctatatcact
B D                       Cow  gcggc----cggg------a-----cct----------gccaactctatatcact
B D                     Sheep  ggggc----tggg------a-----cct----------gccaactctatatcact
                Domestic goat  ggggc----tggg------a-----cct----------gccaactctatatcact
B D                     Horse  ggggc----agga------a-----tct----------gccgacgt--gatccct
B D          White rhinoceros  gatgc----aagg------a-----tct----------gccaacct--tatgcct
B D                       Cat  ggagc----aagg------a-----ttt----------gccaactc--tatccct
B D                       Dog  ----------agg------a-----tct----------gccaaatc----tccct
B D                   Ferret   ggggc----aaag------a-----tct----------gccaaatc--tgtccct
B D                     Panda  ggggc----aagg------a-----tct----------gccaattc--tatccct
               Pacific walrus  ggggc----aagg------a-----tct----------gccaactc--tatccct
                 Weddell seal  ggggc----aagg------g-----tct----------gccaactc--tatccct
B D                  Hedgehog  aaagt----tgcg------gaggctcct----------gcccacgg--ggtccct
B D                     Shrew  gaagc----agag------g-----tct----------gccagctg--cattcct
              Star-nosed mole  ggggt----gggg------a-----cct----------gccaactg--tatccct
B D                  Elephant  gggtg----gggt------a-----tct----------gccaactt--tatacct
          Cape elephant shrew  ---------------------------------------------t--tatacct
B D                   Manatee  agggg----gggt------a-----tct----------gccaagtt--tatacct
             Cape golden mole  ---ag----aagt------a-----tct----------gtcgactt--tatacct
B D                    Tenrec  cccgg----gggt------c-----tcg----------gccaa-gt--tacaccc
                     Aardvark  gtggg----aggtagtttaa-----tct----------gccaactt--aatccct
B D                 Armadillo  ggggc----gggc------a-----ccc----------gccgtctt--tgcaccc
B D                Guinea pig  =======================================================
            Brush-tailed rat  =======================================================
                  Chinchilla  =======================================================
            Black flying-fox  -------------------------------------------------------
               Big brown bat  =======================================================
B D                  Microbat  =======================================================
        David's myotis (bat)  =======================================================
B D                    Lizard  =======================================================
  D  Chinese softshell turtle  =======================================================
  D            Painted turtle  =======================================================
  D           Green seaturtle  =======================================================
B D                    Turkey  =======================================================
B D                   Chicken  =======================================================
  D              Mallard duck  =======================================================
  D                    Parrot  =======================================================
B D                Budgerigar  =======================================================
          Tibetan ground jay  =======================================================
B D               Zebra finch  =======================================================
B D       Medium ground finch  =======================================================
  D    White-throated sparrow  =======================================================
  D       Collared flycatcher  =======================================================
  D          Peregrine falcon  =======================================================
  D              Saker falcon  =======================================================
  D               Rock pigeon  =======================================================
B D        American alligator  =======================================================
B D                   Opossum  =======================================================
B D            Naked mole-rat  =======================================================
B D                    Gibbon  -------------------------------------------------------
B D                   Megabat  =======================================================

Inserts between block 17 and 18 in window
B D                   Rabbit 280bp
B D                     Pika 361bp

Alignment block 18 of 129 in window, 33893581 - 33893583, 3 bps 
B D                     Human  ttt
B D                     Chimp  ttt
B D                   Gorilla  ttt
B D                 Orangutan  ttt
B D                    Rhesus  ttt
B D       Crab-eating macaque  ttt
B D                    Baboon  ttt
B D              Green monkey  ttt
B D                  Marmoset  ttt
B D           Squirrel monkey  ttt
B D                  Bushbaby  ttt
B D                       Pig  -tt
B D                    Alpaca  ctt
               Bactrian camel  ctt
B D                   Dolphin  ttt
                 Killer whale  ttt
             Tibetan antelope  ttt
B D                       Cow  tat
B D                     Sheep  ttt
                Domestic goat  ttt
B D                     Horse  ttt
B D          White rhinoceros  ttt
B D                       Cat  ttt
B D                       Dog  ttt
B D                   Ferret   ttt
B D                     Panda  ttt
               Pacific walrus  ttt
                 Weddell seal  ttt
B D                  Hedgehog  c--
B D                     Shrew  taa
              Star-nosed mole  ttt
B D                  Elephant  ttt
          Cape elephant shrew  tta
B D                   Manatee  ttt
             Cape golden mole  ttt
B D                    Tenrec  ttg
                     Aardvark  ttt
B D                 Armadillo  cct
      Lesser Egyptian jerboa  ---
B D                Guinea pig  ===
            Brush-tailed rat  ===
                  Chinchilla  ===
                Prairie vole  ---
B D           Chinese hamster  ---
B D                     Mouse  ---
              Golden hamster  ---
B D                      Pika  ===
B D                       Rat  ---
            Black flying-fox  ---
               Big brown bat  ===
B D                  Microbat  ===
        David's myotis (bat)  ===
B D                  Squirrel  ---
          Chinese tree shrew  ---
B D                    Lizard  ===
  D  Chinese softshell turtle  ===
  D            Painted turtle  ===
  D           Green seaturtle  ===
B D                    Turkey  ===
B D                   Chicken  ===
  D              Mallard duck  ===
  D                    Parrot  ===
B D                Budgerigar  ===
          Tibetan ground jay  ===
B D               Zebra finch  ===
B D       Medium ground finch  ===
  D    White-throated sparrow  ===
  D       Collared flycatcher  ===
  D          Peregrine falcon  ===
  D              Saker falcon  ===
  D               Rock pigeon  ===
B D        American alligator  ===
B D                   Opossum  ===
B D            Naked mole-rat  ===
B D                    Rabbit  ===
B D                    Gibbon  ---
B D                   Megabat  ===

Inserts between block 18 and 19 in window
B D                      Cat 111bp

Alignment block 19 of 129 in window, 33893584 - 33893587, 4 bps 
B D                     Human  tgag
B D                     Chimp  tgag
B D                   Gorilla  tgag
B D                 Orangutan  tgag
B D                    Rhesus  tgag
B D       Crab-eating macaque  tgag
B D                    Baboon  tgag
B D              Green monkey  tgag
B D                  Marmoset  gggg
B D           Squirrel monkey  ggag
B D                  Bushbaby  agag
           Chinese tree shrew  ---g
B D                       Pig  aaag
B D                    Alpaca  aaag
               Bactrian camel  aaag
B D                   Dolphin  aaag
                 Killer whale  aaag
             Tibetan antelope  taaa
B D                       Cow  aaaa
B D                     Sheep  taaa
                Domestic goat  taaa
B D                     Horse  aaag
B D          White rhinoceros  aaaa
B D                       Cat  cgag
B D                       Dog  caag
B D                   Ferret   aaag
B D                     Panda  aaag
               Pacific walrus  aaag
                 Weddell seal  aaag
             Black flying-fox  -gag
B D                  Hedgehog  -ggg
B D                     Shrew  aaac
              Star-nosed mole  aaag
B D                  Elephant  aaaa
          Cape elephant shrew  aaaa
B D                   Manatee  aaaa
             Cape golden mole  taaa
B D                    Tenrec  acaa
                     Aardvark  aaaa
B D                 Armadillo  -caa
      Lesser Egyptian jerboa  ----
B D                Guinea pig  ====
            Brush-tailed rat  ====
                  Chinchilla  ====
                Prairie vole  ----
B D           Chinese hamster  ----
B D                     Mouse  ----
              Golden hamster  ----
B D                      Pika  ====
B D                       Rat  ----
               Big brown bat  ====
B D                  Microbat  ====
        David's myotis (bat)  ====
B D                  Squirrel  ----
B D                    Lizard  ====
  D  Chinese softshell turtle  ====
  D            Painted turtle  ====
  D           Green seaturtle  ====
B D                    Turkey  ====
B D                   Chicken  ====
  D              Mallard duck  ====
  D                    Parrot  ====
B D                Budgerigar  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
B D       Medium ground finch  ====
  D    White-throated sparrow  ====
  D       Collared flycatcher  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
  D               Rock pigeon  ====
B D        American alligator  ====
B D                   Opossum  ====
B D            Naked mole-rat  ====
B D                    Rabbit  ====
B D                    Gibbon  ----
B D                   Megabat  ====

Alignment block 20 of 129 in window, 33893588 - 33893591, 4 bps 
B D                     Human  ttgt
B D                     Chimp  ttgt
B D                   Gorilla  ttgt
B D                 Orangutan  ttgt
B D                    Rhesus  ttgc
B D       Crab-eating macaque  ttgc
B D                    Baboon  ttgc
B D              Green monkey  ttgc
B D                  Marmoset  ttgt
B D           Squirrel monkey  ttgt
B D                  Bushbaby  ttgt
           Chinese tree shrew  tcgt
B D                  Squirrel  --gt
       Lesser Egyptian jerboa  --at
                 Prairie vole  --gt
B D           Chinese hamster  --at
               Golden hamster  --ac
B D                    Rabbit  ttgt
B D                       Pig  tgac
B D                    Alpaca  ttgc
               Bactrian camel  ttgc
B D                   Dolphin  ttgc
                 Killer whale  ttgc
             Tibetan antelope  ttgc
B D                       Cow  ttgc
B D                     Sheep  ttgc
                Domestic goat  ttgc
B D                     Horse  ttgc
B D          White rhinoceros  ttgc
B D                       Cat  ctgt
B D                       Dog  ttgc
B D                   Ferret   ttgc
B D                     Panda  ttgc
               Pacific walrus  tttc
                 Weddell seal  ttgc
             Black flying-fox  ttgc
B D                  Hedgehog  ctga
B D                     Shrew  ttgc
              Star-nosed mole  ttgc
B D                  Elephant  gtgt
          Cape elephant shrew  ctg-
B D                   Manatee  gtgt
             Cape golden mole  atgt
B D                    Tenrec  gggt
                     Aardvark  gtgt
B D                 Armadillo  gtgt
B D                Guinea pig  ====
            Brush-tailed rat  ====
                  Chinchilla  ====
B D                     Mouse  ----
B D                      Pika  ====
B D                       Rat  ----
               Big brown bat  ====
B D                  Microbat  ====
        David's myotis (bat)  ====
B D                    Lizard  ====
  D  Chinese softshell turtle  ====
  D            Painted turtle  ====
  D           Green seaturtle  ====
B D                    Turkey  ====
B D                   Chicken  ====
  D              Mallard duck  ====
  D                    Parrot  ====
B D                Budgerigar  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
B D       Medium ground finch  ====
  D    White-throated sparrow  ====
  D       Collared flycatcher  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
  D               Rock pigeon  ====
B D        American alligator  ====
B D                   Opossum  ====
B D            Naked mole-rat  ====
B D                    Gibbon  ----
B D                   Megabat  ====

Inserts between block 20 and 21 in window
B D                      Cat 123bp

Alignment block 21 of 129 in window, 33893592 - 33893608, 17 bps 
B D                     Human  ctttt-caagtctgta--gg-
B D                     Chimp  ctttt-caagtctgta--gg-
B D                   Gorilla  ctttt-caagtctgta--gg-
B D                 Orangutan  ctttt-caagtctgta--gg-
B D                    Rhesus  ctttt-caagtctgta--gg-
B D       Crab-eating macaque  ctttt-caagtctgta--gg-
B D                    Baboon  ctttt-caagtctgtt--gg-
B D              Green monkey  ctttt-caagtctgta--gg-
B D                  Marmoset  cttct-caagtctgta--gg-
B D           Squirrel monkey  cttct-caa------------
B D                  Bushbaby  atttt-caagtctgta--ag-
           Chinese tree shrew  acttt-gagg-----a--ag-
B D                  Squirrel  acttt-caagtctaag-----
       Lesser Egyptian jerboa  atttt-caagtttaag-----
                 Prairie vole  agttt-caagtctaag-----
B D           Chinese hamster  agttt-caagtctaag-----
               Golden hamster  agttt-caagtctaag-----
B D                    Rabbit  atttt-taggtctgctct---
B D                       Pig  cctta-caagtcagtg--ta-
B D                    Alpaca  acttc-caagtctgta--ta-
               Bactrian camel  acttc-caagtctgta--ta-
B D                   Dolphin  actta-gcagcatgta--ta-
                 Killer whale  actta-gcagcatgta--ta-
             Tibetan antelope  tcttg-agtgtctata--tg-
B D                       Cow  tctta-agcatctata--tg-
B D                     Sheep  tctta-agtgtctgta--tg-
                Domestic goat  tctta-agtgtctata--tg-
B D                     Horse  gctta-cacatgtgta--ta-
B D          White rhinoceros  accta-caagtctcta--ta-
B D                       Cat  actta-caaatgtgga--ta-
B D                       Dog  acttc-caagtctaga--ta-
B D                   Ferret   acttg-aaagcctgga--ta-
B D                     Panda  attta-caagtccggg--ta-
               Pacific walrus  acttaacaagtctgga--ga-
                 Weddell seal  acttagcaagtctgga--ta-
             Black flying-fox  actta-c--------g--ta-
B D                  Hedgehog  gct---caggcccgta--ga-
B D                     Shrew  tctta-caagtctttc--ta-
              Star-nosed mole  actta-caagtgtgga--ta-
B D                  Elephant  acgtt-caagtctata--tag
          Cape elephant shrew  ------------------tag
B D                   Manatee  acgtt-caagtcta----tag
             Cape golden mole  ccatt-caaatctgtg--tag
B D                    Tenrec  cagtt-caa--cggtg-----
                     Aardvark  atgct-ccagtctgtt--cag
B D                 Armadillo  ccctg-cacgtctgtg--ggc
B D                Guinea pig  =====================
            Brush-tailed rat  =====================
                  Chinchilla  =====================
B D                     Mouse  ---------------------
B D                      Pika  =====================
B D                       Rat  ---------------------
               Big brown bat  =====================
B D                  Microbat  =====================
        David's myotis (bat)  =====================
B D                    Lizard  =====================
  D  Chinese softshell turtle  =====================
  D            Painted turtle  =====================
  D           Green seaturtle  =====================
B D                    Turkey  =====================
B D                   Chicken  =====================
  D              Mallard duck  =====================
  D                    Parrot  =====================
B D                Budgerigar  =====================
          Tibetan ground jay  =====================
B D               Zebra finch  =====================
B D       Medium ground finch  =====================
  D    White-throated sparrow  =====================
  D       Collared flycatcher  =====================
  D          Peregrine falcon  =====================
  D              Saker falcon  =====================
  D               Rock pigeon  =====================
B D        American alligator  =====================
B D                   Opossum  =====================
B D            Naked mole-rat  =====================
B D                    Gibbon  ---------------------
B D                   Megabat  =====================

Inserts between block 21 and 22 in window
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                 Hedgehog 1bp
B D                    Shrew 1bp
             Star-nosed mole 1bp

Alignment block 22 of 129 in window, 33893609 - 33893674, 66 bps 
B D                     Human  atca-gcccaca----gc----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
B D                     Chimp  atca-gcccaca----gc----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
B D                   Gorilla  atca-gcccaca----gc----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
B D                 Orangutan  atca-gcccaca----gc----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
B D                    Rhesus  atca-acccaca----gc----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
B D       Crab-eating macaque  atca-acccaca----gc----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
B D                    Baboon  atca-acccaca----gc----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
B D              Green monkey  atca-acccaca----gc----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
B D                  Marmoset  gtca-gcccaca----gc----ct-ggt----------tc---------ct--gtgaa-g---t-gagct
B D           Squirrel monkey  gtca-acccaca----ac----ct-ggt----------tc---------ct--gtgaa-g---t-gagct
B D                  Bushbaby  atca-gcctatagcttgc----tt-ggt----------tc---------ct--atgaa-g---t-gagct
           Chinese tree shrew  ctcg-gcctacg----gc----ct-ggt----------tcgccccggttct--acgaa-g---t-gagct
B D                  Squirrel  ----------------gt----c--agcttgagggttagc---------tt--ctatgaa---gcaagtt
       Lesser Egyptian jerboa  ----------------at----c--agc----------tg---------ttagctggg-------gcact
                 Prairie vole  ----------------gc----tt-ggc----------ac---------tt--ctaggca---t-acgct
B D           Chinese hamster  ----------------gc----ttgggc----------ac---------tt--ctgggta---t-acact
               Golden hamster  ----------------gc----tt-ggc----------ac---------tt--ctgggca---t-acact
B D                     Mouse  -------------------------tgc----------gc---------ct--ctggg------------
B D                       Rat  -------------------------cgc----------ac---------ct--ctgggca---t------
B D                    Rabbit  gtca-tccgac-----gc----tt-ggt----------tc---------cc--atgaa-a---t-gagct
B D                      Pika  atca-gcttaca----ac----tt-ggg----------tc---------tt--atgaa-g---t-gagct
B D                       Pig  ccca-gcctgca----gc----ct-ggt----------tg---------ct--ctgca-g---t-gagct
B D                    Alpaca  ccca-gccttcc----ac----tt-ggt----------tg---------cc--ttgaa-g---t-gagct
               Bactrian camel  ccca-gccttgc----ac----tt-ggt----------tg---------cc--ttgaa-g---t-gagct
B D                   Dolphin  ccca-gcctaca----gc----tt-ggt----------tc---------ct--gtgag-a---t-gagct
                 Killer whale  ccca-gcctaca----gc----tt-ggt----------tc---------ct--gtgag-a---t-gagct
             Tibetan antelope  ccca-gcctacc----ac----tt-gat----------tc---------ct--gtgaa-g---t-gagct
B D                       Cow  ctca-gcccacc----ac----tt-gat----------tc---------ct--gtgaa-g---t-gagct
B D                     Sheep  ccca-gcctacc----ac----tt-gat----------tc---------ct--gtgaa-g---t-gagct
                Domestic goat  ccca-gcctacc----ac----tt-gat----------tc---------ct--gtgaa-g---t-gagct
B D                     Horse  ctca-gtctgca----ac----tt-ggc----------tc---------ct--gtgaa-g---t-gagct
B D          White rhinoceros  ctca-gtctaca----ac----tt-ggc----------tc---------at--gtgaa-g---t-gagct
B D                       Cat  ctca-acctaca----at----tc-ggt----------tc---------ct--gtgaa-gtaat-aagct
B D                       Dog  catg-gcctaca----ac----tt-ggt----------gc---------ct--gtgaa-g---t-gagct
B D                   Ferret   ctcg-gcctgca----ac----tt-gat----------tc---------ct--gtgaa-g---t-gagct
B D                     Panda  cttg-gcctaca----at----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
               Pacific walrus  ctcg-gcctaca----ac----tt-ggt----------tt---------ct--gtgaa-g---t-gagct
                 Weddell seal  ctcg-gcctaca----ac----tt-ggt----------tt---------ct--gtgaa-g---t-gaact
             Black flying-fox  ctga-gccccaa----ac----tt-ggt----------tc---------ct--gtgaa-g---t-gagct
B D                  Hedgehog  cccc-gcgt-------------ct-cgt----------cc---------ct--gtgac-g---c-ggaaa
B D                     Shrew  ccca-gcct----------------------------------------------------------gcc
              Star-nosed mole  ctca-gcctaca----ac----gt-ggt----------tc---------tt--gtgaa-g---t-gagct
B D                  Elephant  atca-gcttaca----gc----tt-cgt----------tc---------ct--gtgat-a---t-gagcc
          Cape elephant shrew  ctca-acctgca----gt----tt-ggt----------tc---------ct--gtgat-t---t-gagct
B D                   Manatee  atca-gccttca----gc----tt-ggt----------tc---------ct--gtgat-g---t-gagct
             Cape golden mole  atcaagcctaca----gc----tt-ggt----------tt---------ct--gtgat-g---t-gagct
B D                    Tenrec  -----gcctaca----gt----ct-tgt----------tc---------ct--ggacg-g---t-gagct
                     Aardvark  atca-gcctata----gc----tt-ggt----------tc---------ct--gtgat-g---c-aagtt
B D                 Armadillo  atca-gccagca----gctccttt-ggt----------tc---------ct--gtgac-g---c-gagct
B D                Guinea pig  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
B D                    Lizard  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Gibbon  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================

                        Human  t-gc--tgtgactgctt----cttc--aggg---------acaactgtgg
                        Chimp  t-gc--tgtgactgctt----cttc--aggg---------acaactgtgg
                      Gorilla  t-gc--tgtgactgctt----cttc--aggg---------acaactgtgg
                    Orangutan  t-gc--tgtgactgctt----cttc--aggg---------acaactgtgg
                       Rhesus  t-gc--tgtgactgctt----cttc--agtc---------acagctgtgg
          Crab-eating macaque  t-gc--tgtgactgctt----cttc--agtc---------acagctgtgg
                       Baboon  t-gc--tgtgactgctt----cttc--agtc---------acagctgtgg
                 Green monkey  t-gc--tgtgactgctt----cttc--agtc---------acagctgtgg
                     Marmoset  t-gc--tgtcactgcct----cttc--aggg---------acaactgtga
              Squirrel monkey  t-gc--tgtcactgcct----cttc--aggg---------acaactgtga
                     Bushbaby  t-gc--tgctgctgcct----cttc--agat---------acaactgtgg
           Chinese tree shrew  t-gc--gggggctgcct----cttc--aggg---------gcgactgag-
                     Squirrel  t-gc--tggggctgctt----cttt--gggg---------gcagccttga
       Lesser Egyptian jerboa  t-gc--tcgggctgcttctgaattc--aggt---------acaactgtga
                 Prairie vole  t-ac--tggagttgcctctgaattc--cggc---------acacccgtga
              Chinese hamster  c-tc--tggagctgcctctgaattc--cagc---------acacctgtga
               Golden hamster  c-tc--tggagcagcctctgaattc--cggc---------acacctgtga
                        Mouse  --------------ctt----attc--gggcacacctttgacacctgtga
                          Rat  --------gagcttctt----atcc--gggc---------acacatgtga
                       Rabbit  t-gc--------------------------------------------ag
                         Pika  t-gctaagggattgctc-----tca--aagg---------gcacctggga
                          Pig  t-gc--caggactgcct----cttc--aggg---------gcaaccctgg
                       Alpaca  t-gc--taggactgcct----tttc--aggg---------gcaactgtgg
               Bactrian camel  t-gc--taggactgcct----tttc--aggg---------gcaactgtgg
                      Dolphin  t-gc--tgggactgcct----ctgc--aggg---------gcaactgtgg
                 Killer whale  t-gc--tgggactgcct----ctgc--aggg---------gcaactgtgg
             Tibetan antelope  t-g------------ct----ctgc--aggg---------gcaactgtgg
                          Cow  t-g------------ct----ctgc--aagg---------gcaactgtgg
                        Sheep  t-g------------ct----ctgc--tggg---------gcaactgtgg
                Domestic goat  t-g------------ct----ctgc--tggg---------gcaactgtgg
                        Horse  t-gc--cagggctccct----cttc--agga---------gcaactaagg
             White rhinoceros  t-gc--tagggctgcct----cttc--aggg---------gcaactgtgg
                          Cat  t-gc--tatggatgcct----cttt--aggg---------gcagttgtgg
                          Dog  tcac--atgaagtgcct----cttt--gggg---------gccactgtgg
                      Ferret   t-gc--tggggctgcct----cttt--aggg---------gcaacggtgg
                        Panda  t-gc--tagggctgcct----cttt--aggg---------acaactgggg
               Pacific walrus  t-gc--tagggctgcct----cttt--aggg---------gcaactgtag
                 Weddell seal  t-gc--tagagctgcct----cttt--aggg---------gcaactgtaa
             Black flying-fox  t-ac--taggactgcct----cctc--ggcg---------gcaaccgtgg
                     Hedgehog  g-gc--cg-------cg----ccgc-------------------------
                        Shrew  t-ac--ca-------tt----ccgg-------------------------
              Star-nosed mole  t-gc--tagcgctgcct----ctgg---------------gtaactgggg
                     Elephant  t-gc--tggggctgcct----catc--aggg---------gcaactgtag
          Cape elephant shrew  t-ac--tgttactgcct----cttc--aggg---------gcaaatgtgg
                      Manatee  t-gc--tggggctgcct----cttc--aggg---------gcaactgtgg
             Cape golden mole  t-gc--tgggacaac--------------tg---------g---------
                       Tenrec  g-gc--tggtgctg---------------gg---------g---------
                     Aardvark  t-gc--tggggctgcct----cttc--aggg---------gccactgtgg
                    Armadillo  t-gc--tggggccgcct----cttccggggg---------gcaacctggg
                   Guinea pig  ==================================================
             Brush-tailed rat  ==================================================
                   Chinchilla  ==================================================
                Big brown bat  ==================================================
                     Microbat  ==================================================
         David's myotis (bat)  ==================================================
                       Lizard  ==================================================
     Chinese softshell turtle  ==================================================
               Painted turtle  ==================================================
              Green seaturtle  ==================================================
                       Turkey  ==================================================
                      Chicken  ==================================================
                 Mallard duck  ==================================================
                       Parrot  ==================================================
                   Budgerigar  ==================================================
           Tibetan ground jay  ==================================================
                  Zebra finch  ==================================================
          Medium ground finch  ==================================================
       White-throated sparrow  ==================================================
          Collared flycatcher  ==================================================
             Peregrine falcon  ==================================================
                 Saker falcon  ==================================================
                  Rock pigeon  ==================================================
           American alligator  ==================================================
                      Opossum  ==================================================
               Naked mole-rat  ==================================================
                       Gibbon  --------------------------------------------------
                      Megabat  ==================================================

Inserts between block 22 and 23 in window
         Cape elephant shrew 1015bp

Alignment block 23 of 129 in window, 33893675 - 33893691, 17 bps 
B D                     Human  tcatcttggggaga---tgc
B D                     Chimp  tcatcttggggaga---tgc
B D                   Gorilla  tcatcttggggaga---tgc
B D                 Orangutan  tcatcttgaggaga---tgc
B D                    Rhesus  tcatcttgaggagg---tgc
B D       Crab-eating macaque  tcatcttgaggagg---tgc
B D                    Baboon  tcatcttgaggagg---tgc
B D              Green monkey  tcatcttgaggagg---tgc
B D                  Marmoset  gcatcttgaggaga---tgc
B D           Squirrel monkey  gcatctcgaggaga---tgc
B D                  Bushbaby  gaatcttgaagtgc---tgg
           Chinese tree shrew  -catcttgaagaaaaactgg
B D                  Squirrel  gcatcttgaataaa---tta
       Lesser Egyptian jerboa  gcatcttgaagaaa---tgc
                 Prairie vole  acctcttgaagaaa---tgc
B D           Chinese hamster  gcctcttgaagaaa---tgc
               Golden hamster  gcctcttgaagaaa---tgc
B D                     Mouse  gtctcttgaagaaa---tgc
B D                       Rat  gcctcttgaagaaa---tgc
B D                    Rabbit  gcgccctgaagaaa---tgc
B D                      Pika  gcaccctgaagaaa---tgc
B D                       Pig  gcatcttgaagtca---tgc
B D                    Alpaca  gcatcttaaagaaa---tgc
               Bactrian camel  gcatcttaaagaaa---tgc
B D                   Dolphin  gcatcctgaagaaa---tgc
                 Killer whale  gcatcctgaagaaa---tac
             Tibetan antelope  gcatcttgaagaaa---tgc
B D                       Cow  gcgtcttgaagaaa---tac
B D                     Sheep  gcatcttgaagaaa---tgc
                Domestic goat  gcatcttgaagaaa---tgc
B D                     Horse  gcatcttgaagaaa---tgc
B D          White rhinoceros  gcatcttgaagaaa---tgc
B D                       Cat  gcatcttgaagaaa---tgc
B D                       Dog  gccctttgaagaaa---ttc
B D                   Ferret   gcactttgaagaaa---tgc
B D                     Panda  tcacttggaagaaa---tgc
               Pacific walrus  gcactttgaagaaa---cgt
                 Weddell seal  gcactttgaagaaa---tgt
             Black flying-fox  gcatcttgaagaaa---tgc
B D                  Hedgehog  -----ctcttgggg---tga
B D                     Shrew  -----ctgtaggag---agg
              Star-nosed mole  gcaccctgaagaaa---tgt
B D                  Elephant  gcaccttgaagaaa---tgc
B D                   Manatee  gcatcttgaagaaa---tgc
             Cape golden mole  gtatttggaagaac---tgg
B D                    Tenrec  gcatt--------c---tgc
                     Aardvark  acatcttgaagaaa---cac
B D                 Armadillo  gcagcttgaagaaa---tgc
         Cape elephant shrew  ====================
B D                Guinea pig  ====================
            Brush-tailed rat  ====================
                  Chinchilla  ====================
               Big brown bat  ====================
B D                  Microbat  ====================
        David's myotis (bat)  ====================
B D                    Lizard  ====================
  D  Chinese softshell turtle  ====================
  D            Painted turtle  ====================
  D           Green seaturtle  ====================
B D                    Turkey  ====================
B D                   Chicken  ====================
  D              Mallard duck  ====================
  D                    Parrot  ====================
B D                Budgerigar  ====================
          Tibetan ground jay  ====================
B D               Zebra finch  ====================
B D       Medium ground finch  ====================
  D    White-throated sparrow  ====================
  D       Collared flycatcher  ====================
  D          Peregrine falcon  ====================
  D              Saker falcon  ====================
  D               Rock pigeon  ====================
B D        American alligator  ====================
B D                   Opossum  ====================
B D            Naked mole-rat  ====================
B D                    Gibbon  --------------------
B D                   Megabat  ====================

Alignment block 24 of 129 in window, 33893692 - 33893775, 84 bps 
B D                     Human  c----ttg------g-------ggt-ct--gt-gg----c--aagag----gcaaaaaggagaatgtgtg
B D                     Chimp  c----ttg------g-------ggt-ct--gt-gg----c--gagag----gcaaaaaggagaatgtgtg
B D                   Gorilla  c----ttg------g-------ggt-ct--gt-gg----c--aagag----gcaaaaaggagaatgtgtg
B D                 Orangutan  c----ttg------g-------ggt-ct--gt-gg----c--aagag----gcaaataggagaatgtgtg
B D                    Rhesus  c----ttg------g-------ggt-ct--gt-gg----c--aagag----gcaaaaaggagaatgtgtg
B D       Crab-eating macaque  c----ttg------g-------ggt-ct--gt-gg----c--aagag----gcaaaaaggagaatgtgtg
B D                    Baboon  c----ttg------g-------ggt-ct--gt-gg----c--aagag----gcaaaaaggagaatgtgtg
B D              Green monkey  c----ttg------g-------ggt-ct--gt-gg----c--aagag----gcaaaaaggagaatgtgtg
B D                  Marmoset  t----ttg------g-------gat-ct--gt-gg----c--aggag----gcaaaaaggagaatgtgtg
B D           Squirrel monkey  t----ttg------g-------ggt-ct--gt-gg----c--aggag----gcaaaaaggagaatgtgtg
B D                  Bushbaby  c----acgga----g-------ggt-ct--gc-ga----c--aagag----acaaaa---agaatgtgtg
           Chinese tree shrew  c----ctggagggtg-------gga-ct--gc-gg----ctgcggcg----gcca----gagaacaggag
B D                  Squirrel  ttgcatca------a-------gggctt--tg-gg----c--cagag----gcagaaaggagactatatg
       Lesser Egyptian jerboa  tggcatg---------------------------------------------------------------
                 Prairie vole  tggcatga------g-------ggg-tt--gg-ga----c--aaggt----acctaagggaggatacggg
B D           Chinese hamster  tggcatga------g-------ggg-tt--gg-ga----c--aaggt----gcctaagggagaatacagg
               Golden hamster  tggcatga------g-------ggg-tt--gg-ga----c--aaggc----gcctaag------------
B D                     Mouse  tggcatga------g-------gtg-tt--gg-aa----c--aaggt----gcctaagggagaagagaga
B D                       Rat  tggcatga------g-------ggg-----gg-ga----c--aaggt----acccgagagagaatacgga
B D                    Rabbit  tggcatgg------a-------ggg-----------------tgtgt----g------------------
B D                      Pika  tggcatgg------a-------ggg-----------------tatgt----agccaggggcaaccgcaaa
B D                       Pig  ctgcacgg------actggggcggg-ac--tg-aggggcg--gagac----gcagagcgggcagtg----
B D                    Alpaca  tggcatgg------g-------ggg-tc--tg-tg----g--gagaa----gcagaaaggaacgtgt--g
               Bactrian camel  tggcatgg------a-------ggg-tc--tg-tg----g--gagaa----gcagaaaggaacgtgt--g
B D                   Dolphin  tggcatgg------a-------ggg-ac--tgtgg----g--gagag----gcagagaggagcatgt---
                 Killer whale  tggcatgg------a-------ggg-gc--tgtgg----g--gagag----gcagagaggagcatgt---
             Tibetan antelope  tggcatgg------a-------ggg-ct--tg-ag----g--aagag----gcagggaggagcctat---
B D                       Cow  tggcatgg------a-------ggg-ct--tg-ag----g--aagag----gcagggaggagcccat---
B D                     Sheep  tggcaggg------a-------ggg-ct--tg-ag----g--aagag----gcagggaggagcccat---
                Domestic goat  tggcaggg------a-------ggg-ct--tg-ag----g--aagag----gcagggaggagcccat---
B D                     Horse  tgacatgg------a-------ggg-tctgtg--g----g--gagaa----gcaagaaggggcacgtgtg
B D          White rhinoceros  tgggacgg------a-------ggg-tc--tg--g----g--gagag----gcaaaaaggggcatgtgtg
B D                       Cat  tggcatgg------a-------gag-tc--tg--g----g--gagag----gcaaaaaggagcacgtgtg
B D                       Dog  tggcctgg------a-------ggg-tc--tg--g----g--gggcgggt-gcacaaaggagcaggtgtg
B D                   Ferret   tggcgtgg------a-------ggg-tc--ta--g----a--gagag----gcacaa---agcacgtgtg
B D                     Panda  tggcatgg------a-------ggg-tc--ta--g----g--gagag----gcacaaaggagcacgtgtg
               Pacific walrus  tggcatgg------a-------ggg-tc--tg--g----g--gagag----gcataaaggagcaggtgtg
                 Weddell seal  tggcatgg------a-------ggg-tc--tg--g----g--aagag----gcacaaaggagcagttgtg
             Black flying-fox  tggcatag------a-------ggg-tc----------------gag----gcaaaaaggagtatgtgtg
B D                  Hedgehog  cagtg-gg------g-------ggc---------g----g--g--------ccc--------------gg
B D                     Shrew  cagaa-gg------g-------ggc-tc--tg--t----g--g--------cct------agcgggtggg
              Star-nosed mole  tggcatgg------a-------ggg-tc--ta--t----g--gggagaggtcccg---ggagcatgtctg
B D                  Elephant  tagcatga------a-------ggg-cg--tgtgt----t--gggaa----ccgaaaaggaacatttgtg
B D                   Manatee  tagcatga------a-------ggg-cc--tgtgt----c--aggaa----cccaaaaggagcatttgtg
             Cape golden mole  tagcatgg------a-------ggt-tg--tgtgt----t--aggag----ccccaaaggagcatgtgtg
B D                    Tenrec  tggcatga------a-------gt----------------------g----cccccacgtgacccaggga
                     Aardvark  tagcataa------a-------ggg-cc--tgtgt----t--gggaa----cccaaaaggatcatgtgtg
B D                 Armadillo  tgctgcga------a-------ggg-cc--cgtgg----c--cggag----ccaaaagggag--tgtgcg
B D           Tasmanian devil  -----------ctca-------aga-cc--tg-tg----g--ctaat----ttcagaatgaatgtatttg
B D                   Wallaby  -----------ctca-------gga-cc--tg-tg----g--ccgat----tccagaatgaatatgtttg
         Cape elephant shrew  ======================================================================
B D                Guinea pig  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
B D                    Lizard  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Gibbon  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================

                        Human  atac-tcagaatgcattaa--agcgtg-----ctcttacagag-c------agaagtc--ag
                        Chimp  atac-tcagaatgcattaa--agcgtg-----ctcttacagag-c------agaagtc--ag
                      Gorilla  atac-tcagaatgcattaa--agcgtg-----ctcttacagag-c------agaagtc--ag
                    Orangutan  atac-tcagaatgcactaa--agcgtg-----ctctcacagag-c------agaagtc--ag
                       Rhesus  atac-tcaaaatgtgctaa--agcgtg-----ctcttacagag-c------agaagtc--ag
          Crab-eating macaque  atac-tcaaaatgcgctaa--agcgtg-----ctcttacagag-c------agaagtc--ag
                       Baboon  atac-tcagaatgcgctaa--agcgtg-----ctcttacagag-c------agaagtc--ag
                 Green monkey  atac-ccggaatgcgctaa--agtgtg-----ctcttacagag-c------agaagtc--ag
                     Marmoset  atac-ccagaatgcactaa--agcatg-----ttcttacagag-c------agaagtc--ag
              Squirrel monkey  atac-ccagaatgcactaa--agcatg-----ttcttacagag-c------agaagtc--ag
                     Bushbaby  atac-tgaaaatgggctaa--agcatg-----ttcttacagag-c------agaagtc--ag
           Chinese tree shrew  gttc-tcagaacgctctca--agtgag-----cgcttggagag-c------ggaagtcgaag
                     Squirrel  atac-tgagaatggactaa--ggcatg-----ttcttgccca-----------aagtc--gg
       Lesser Egyptian jerboa  ------------------------caa-----cttgaggccaa-c------agaagtc--ag
                 Prairie vole  atac-gcagaatagattga--ggtcag-----ctctcagccaa-c------agaaaat--cg
              Chinese hamster  gtac-ttagaataggctga--ggtcag-----ctctcggccag-c------agagatt--ag
               Golden hamster  -------agaatagactga--ggtcag-----ctctcggccag-c------agagatt--ag
                        Mouse  atac-ttagaatagactga--ggtcaatctgtctcttagccag-c------agaagtt--ag
                          Rat  atac-t-----cagactga--ggtcaatcag-ctcttagctag-c------agaagtt--ag
                       Rabbit  ----------ggagacaga--gtgtgc-----taggtgcacag-c------agaaatc--tg
                         Pika  ggat-ttgatgtggataga--aggtgc-----tgctggcacag-c------agaagtc--ag
                          Pig  gggc-ggggcgcagcctgc--tgcaca-----ctcttacagag-c------agaagtc--aa
                       Alpaca  gtac-aggaaatgggctgg--agcgtg-----ctcttatgcag-c------agaaat-----
               Bactrian camel  gtac-agggagtgggctgg--agcatg-----ctcttatgcag-c------agaaatc--ag
                      Dolphin  gtgc-agggaatgggctgg--agcatg-----ctcttacagag-c------aggagtc--ag
                 Killer whale  gtgc-agggaatgggctgg--agcatg-----ctcttacagag-c------aggagtc--ag
             Tibetan antelope  tttg-agggaatgggctgg--agggag-----cgcttacagag-c------agaagtc--ag
                          Cow  tttc-agggaatgggcttg--agggag-----tgcttacagag-c------agaagtc--ag
                        Sheep  tttg-agggaatgggctgg--agagag-----cgcttacagag-c------agaagtc--ag
                Domestic goat  tttg-agggaatgggctgg--agagag-----cgcttacagag-c------agaagtc--ag
                        Horse  ataacaggaaatgggctgg--agcagg-----ctcctacagag-g------ggaagtc--ag
             White rhinoceros  ataa-agggaatgggctgg--agcggg-----ctcctacagag-c------ggaagtc--ag
                          Cat  atat-agggaatgggctgg--cgcatg-----ctcttacggag-c------agaagtc--ag
                          Dog  attc-ggggagtgggctgg--agcgtg-----ctcttacggag-c------agaagtc--ag
                      Ferret   acac-atggagtaggctgg--agcctg-----ctcttacagag-c------agaagtc--ag
                        Panda  atcc-atggagtgggctgg--agtctg-----ctctaacagag-c------agaagtc--ag
               Pacific walrus  atac-atggagtgggcagg--agcctg-----ctcttacagag-c------agaagtc--ag
                 Weddell seal  atac-acggagtgggctgg--agcctg-----cttttacagag-c------agaagtc--ag
             Black flying-fox  acac-agggaatgggctaa--agaatg-----ctcttacagag-c------agaaggc--ag
                     Hedgehog  gccc-gggggt---------------------------------------------------
                        Shrew  ctgc-agggtc---------------------------------------------------
              Star-nosed mole  gtac-aggggc---------------------------------------------------
                     Elephant  atac-agggaatgggctgg--agcaca-----gccttacagag-c---------actc--ag
                      Manatee  atac-agggagtgggctgg--agcaca-----ctcttacagag-c---------actc--gg
             Cape golden mole  ct------------gccag-----gaa-----cccttacagag-a---------gctc--ag
                       Tenrec  ct----------gggccag--agcgca-----tctttatagagca---------aatc--ag
                     Aardvark  acac-ggggaatgggctgg--agcaga-----gccttctagag-c---------actc--ag
                    Armadillo  acgc-agggcaggcgcggggcgtcggg-----cccttagcgat-c----------ctg--ag
              Tasmanian devil  at-c-ctagaacagaccag--aaca-g-----ctattattgag-caatcagaaaagcc--tg
                      Wallaby  gt-c-tgagaacagaccag--agca-a-----ctattactgag-caatcagaaaagcc--cg
          Cape elephant shrew  ==============================================================
                   Guinea pig  ==============================================================
             Brush-tailed rat  ==============================================================
                   Chinchilla  ==============================================================
                Big brown bat  ==============================================================
                     Microbat  ==============================================================
         David's myotis (bat)  ==============================================================
                       Lizard  ==============================================================
     Chinese softshell turtle  ==============================================================
               Painted turtle  ==============================================================
              Green seaturtle  ==============================================================
                       Turkey  ==============================================================
                      Chicken  ==============================================================
                 Mallard duck  ==============================================================
                       Parrot  ==============================================================
                   Budgerigar  ==============================================================
           Tibetan ground jay  ==============================================================
                  Zebra finch  ==============================================================
          Medium ground finch  ==============================================================
       White-throated sparrow  ==============================================================
          Collared flycatcher  ==============================================================
             Peregrine falcon  ==============================================================
                 Saker falcon  ==============================================================
                  Rock pigeon  ==============================================================
           American alligator  ==============================================================
                      Opossum  ==============================================================
               Naked mole-rat  ==============================================================
                       Gibbon  --------------------------------------------------------------
                      Megabat  ==============================================================

Inserts between block 24 and 25 in window
B D                    Shrew 27bp
             Star-nosed mole 17bp
B D                 Elephant 7bp
B D                  Manatee 7bp
                    Aardvark 7bp
B D                Armadillo 4bp

Alignment block 25 of 129 in window, 33893776 - 33893782, 7 bps 
B D                     Human  t----ggc---tgc
B D                     Chimp  c----ggc---tgc
B D                   Gorilla  c----ggc---tgc
B D                 Orangutan  c----agc---tgc
B D                    Rhesus  t----ggc---tgc
B D       Crab-eating macaque  t----ggc---tgc
B D                    Baboon  t----ggc---tgc
B D              Green monkey  t----ggc---tgc
B D                  Marmoset  t----ggc---tgc
B D           Squirrel monkey  t----ggc---tgc
B D                  Bushbaby  t----ggc---tgc
           Chinese tree shrew  tcg--ggc---agc
B D                  Squirrel  t----ggg------
       Lesser Egyptian jerboa  t----ggc--g---
                 Prairie vole  t----gac------
B D           Chinese hamster  t----gac------
               Golden hamster  t----gag------
B D                     Mouse  t----gacttc---
B D                       Rat  t----gacttc---
B D                    Rabbit  t----ggc------
B D                      Pika  t----ggc------
B D                       Pig  t----ggc---agc
B D                    Alpaca  c----agc---agc
               Bactrian camel  c----agc---agc
B D                   Dolphin  t----ggc---agc
                 Killer whale  t----ggc---agc
             Tibetan antelope  t----ggc---agc
B D                       Cow  t----ggc---agc
B D                     Sheep  t----ggc---agc
                Domestic goat  t----ggc---agc
B D                     Horse  t----ggc---agc
B D          White rhinoceros  t----ggc---agc
B D                       Cat  t----ggc---cgc
B D                       Dog  t----gac---agc
B D                   Ferret   t----gac---agc
B D                     Panda  t----gac---cgc
               Pacific walrus  t----gac---agc
                 Weddell seal  t----gac---agc
             Black flying-fox  t----ggt---agc
B D                  Elephant  -agacagc------
B D                   Manatee  -agagagc------
B D                    Tenrec  -------c------
                     Aardvark  -agatggt------
B D                 Armadillo  -ccgcagc------
B D           Tasmanian devil  t----gac---agt
B D                   Wallaby  t----gac---agc
B D                     Shrew  ==============
         Cape elephant shrew  ==============
B D                  Hedgehog  --------------
B D                Guinea pig  ==============
            Brush-tailed rat  ==============
                  Chinchilla  ==============
             Star-nosed mole  ==============
               Big brown bat  ==============
B D                  Microbat  ==============
        David's myotis (bat)  ==============
B D                    Lizard  ==============
  D  Chinese softshell turtle  ==============
  D            Painted turtle  ==============
  D           Green seaturtle  ==============
B D                    Turkey  ==============
B D                   Chicken  ==============
  D              Mallard duck  ==============
  D                    Parrot  ==============
B D                Budgerigar  ==============
          Tibetan ground jay  ==============
B D               Zebra finch  ==============
B D       Medium ground finch  ==============
  D    White-throated sparrow  ==============
  D       Collared flycatcher  ==============
  D          Peregrine falcon  ==============
  D              Saker falcon  ==============
  D               Rock pigeon  ==============
B D        American alligator  ==============
B D                   Opossum  ==============
B D            Naked mole-rat  ==============
B D                    Gibbon  --------------
B D                   Megabat  ==============
            Cape golden mole  --------------

Inserts between block 25 and 26 in window
B D                 Squirrel 2bp
      Lesser Egyptian jerboa 2bp
B D                    Mouse 2bp
B D                      Rat 2bp
B D                   Rabbit 3bp
B D                     Pika 108bp

Alignment block 26 of 129 in window, 33893783 - 33893805, 23 bps 
B D                     Human  tca-ccagagaggggcctg-gg--------ggt
B D                     Chimp  tca-ccagagaggggcctg-gg--------ggt
B D                   Gorilla  tca-ccagagaggggcctg-gg--------ggt
B D                 Orangutan  tca-ccagagaggggcctg-gg--------cgt
B D                    Rhesus  tca-ccagacaggggcctt-gg--------ggt
B D       Crab-eating macaque  tca-ccagacaggggcctt-gg--------ggt
B D                    Baboon  tca-ccagacaggggcctt-gg--------ggt
B D              Green monkey  tca-ccagacaggggcctc-gg--------ggt
B D                  Marmoset  tca-ccagagaggggcccc-ag--------ggt
B D           Squirrel monkey  tca-ccagagaggggcctg-gg--------ggt
B D                  Bushbaby  tct-ccacagataggcctg-ag--------ggt
           Chinese tree shrew  tcc-cc-------------------------gc
B D                  Squirrel  tag-c--cagaggggcctg-gg-----gtgttg
       Lesser Egyptian jerboa  tcg-c--cacccaggcctt-gg--------ggg
                 Prairie vole  ---------aacaggtcca-ggtaggggcatgg
B D           Chinese hamster  ----------acaggtcag-ggtggggacatgg
               Golden hamster  ----------gcaagtctg-ggtgcggactttg
B D                     Mouse  cag-c--cacacaggtctg-gctagagacaggg
B D                       Rat  tgg-c--cactcaggtctg-gttggagacaggg
B D                    Rabbit  tca-ccacagtggggcctg-tg--------ggc
B D                       Pig  tc--cagcagataggccct-gg--------agg
B D                    Alpaca  aa--cagcagataggccct-gg--------ggg
               Bactrian camel  aa--cagcagataggccct-gg--------gag
B D                   Dolphin  tc--cagcagacaggccct-cg--------ggg
                 Killer whale  tc--cagcagacaggccct-cg--------ggg
             Tibetan antelope  tc--caacagaggggccct-gg--------ggg
B D                       Cow  tc--caacagaggggccct-gg--------ggg
B D                     Sheep  tc--caacagaggggtccc-ca--------ggg
                Domestic goat  tc--caacagaggggtccc-gg--------ggg
B D                     Horse  tca-ctgcggacgggcctg-gc---------aa
B D          White rhinoceros  tcg-ctgcagacaggcccc-gc--------gga
B D                       Cat  acg-ttgcacatagaccct-gg--------ggc
B D                       Dog  tcg-ttgtacataggccct--g--------ggc
B D                   Ferret   tcctttacacataagccct-gg--------ggc
B D                     Panda  tca-ttgcacgtaggccct-gg--------ggc
               Pacific walrus  tca-ttgcacataggccccggg--------ggc
                 Weddell seal  tca-ttgcacataggcccc-gg--------ggc
             Black flying-fox  tca-cagcag--aggccca-gg--------gag
B D                  Elephant  tca-ccacagataggctct-ag--------ggt
B D                   Manatee  tca-ccacagataggccct-ag--------ggt
B D                    Tenrec  tca-tcacagataggc----------------t
                     Aardvark  tca-ccacagataggt-tc-ag--------ggt
B D                 Armadillo  tta-ccccagccagggcgc-cc--------tgt
B D           Tasmanian devil  cca-ccaaggataggcctg-ag--------ag-
B D                   Wallaby  cca-ccaaggacaggcctg-gg--------ag-
B D                     Shrew  =================================
         Cape elephant shrew  =================================
B D                  Hedgehog  ---------------------------------
B D                Guinea pig  =================================
            Brush-tailed rat  =================================
                  Chinchilla  =================================
B D                      Pika  =================================
             Star-nosed mole  =================================
               Big brown bat  =================================
B D                  Microbat  =================================
        David's myotis (bat)  =================================
B D                    Lizard  =================================
  D  Chinese softshell turtle  =================================
  D            Painted turtle  =================================
  D           Green seaturtle  =================================
B D                    Turkey  =================================
B D                   Chicken  =================================
  D              Mallard duck  =================================
  D                    Parrot  =================================
B D                Budgerigar  =================================
          Tibetan ground jay  =================================
B D               Zebra finch  =================================
B D       Medium ground finch  =================================
  D    White-throated sparrow  =================================
  D       Collared flycatcher  =================================
  D          Peregrine falcon  =================================
  D              Saker falcon  =================================
  D               Rock pigeon  =================================
B D        American alligator  =================================
B D                   Opossum  =================================
B D            Naked mole-rat  =================================
B D                    Gibbon  ---------------------------------
B D                   Megabat  =================================
            Cape golden mole  ---------------------------------

Alignment block 27 of 129 in window, 33893806 - 33893818, 13 bps 
B D                     Human  -tgaga-aa-agc-aaa
B D                     Chimp  -tgaga-aa-agc-aaa
B D                   Gorilla  -tgaga-aa-agc-aaa
B D                 Orangutan  -tgaga-aa-ggcaaaa
B D                    Rhesus  -tgaga-aa-ggc-aaa
B D       Crab-eating macaque  -tgaga-aa-ggc-aaa
B D                    Baboon  -tgaga-aa-ggc-aaa
B D              Green monkey  -tgaga-aa-ggc-aaa
B D                  Marmoset  -agaga-aa-agt--ga
B D           Squirrel monkey  -agaga-aa-ggc--aa
B D                  Bushbaby  ----ga-ga-ggg-tgg
           Chinese tree shrew  -agcga-ga-agt-gga
B D                  Squirrel  -agaaa-tgtcg-----
       Lesser Egyptian jerboa  -ggaga-gg-ggg-tgc
                 Prairie vole  -agaga-gatagg-gaa
B D           Chinese hamster  -agaga-gagggg-gga
               Golden hamster  -agaga-ga-agg-aga
B D                     Mouse  -agaca-ggggga-aaa
B D                       Rat  -agacagggggga-aaa
B D                    Rabbit  -tgaga-agtagg-gaa
B D                       Pig  -tggga-a---------
B D                    Alpaca  -tggga-aa-ggt-aga
               Bactrian camel  -tggga-aa-ggt-aga
B D                   Dolphin  -tggga-aa-ggt-gga
                 Killer whale  -tggga-aa-ggt-gga
             Tibetan antelope  -tggga-aa-ggt-gga
B D                       Cow  -tggga-aa-ggt-gga
B D                     Sheep  -tggga-ag-ggt-gga
                Domestic goat  -tggaa-ag-ggt-gga
B D                     Horse  -tggga-ag-tgt-gga
B D          White rhinoceros  -tggga-ag-tgt-gga
B D                       Cat  -tggaa--a-tgt-ga-
B D                       Dog  -tggga-cc-tgt-gga
B D                   Ferret   -tggga-cg-tgt-gga
B D                     Panda  -tggga-ca-tgt-ggg
               Pacific walrus  -tggga-ca-tgt-gaa
                 Weddell seal  -tggga-ca-tgt-gga
             Black flying-fox  -tggga-aa-tgt-gga
B D                     Shrew  -cggtg-gg-aat----
              Star-nosed mole  -caggg-aa-gac----
B D                  Elephant  -tggga-aa-ttt-gg-
B D                   Manatee  -tggga-aa-ttt-gg-
B D                    Tenrec  -tggg------------
                     Aardvark  -tggga-aa-cat-gg-
B D                 Armadillo  -cgggg-ac-ggt-gg-
B D           Tasmanian devil  cgagga-aa-cat-gg-
B D                   Wallaby  ccagga-aa-cgg-gg-
         Cape elephant shrew  =================
B D                  Hedgehog  -----------------
B D                Guinea pig  =================
            Brush-tailed rat  =================
                  Chinchilla  =================
B D                      Pika  =================
               Big brown bat  =================
B D                  Microbat  =================
        David's myotis (bat)  =================
B D                    Lizard  =================
  D  Chinese softshell turtle  =================
  D            Painted turtle  =================
  D           Green seaturtle  =================
B D                    Turkey  =================
B D                   Chicken  =================
  D              Mallard duck  =================
  D                    Parrot  =================
B D                Budgerigar  =================
          Tibetan ground jay  =================
B D               Zebra finch  =================
B D       Medium ground finch  =================
  D    White-throated sparrow  =================
  D       Collared flycatcher  =================
  D          Peregrine falcon  =================
  D              Saker falcon  =================
  D               Rock pigeon  =================
B D        American alligator  =================
B D                   Opossum  =================
B D            Naked mole-rat  =================
B D                    Gibbon  -----------------
B D                   Megabat  =================
            Cape golden mole  -----------------

Inserts between block 27 and 28 in window
B D                      Dog 189bp

Alignment block 28 of 129 in window, 33893819 - 33893882, 64 bps 
B D                     Human  aaaa---tggat-gggcttctatcaga----ttt------------c---------a--acactgatgaa
B D                     Chimp  aaaa---tggat-gggcttctatcaga----ttt------------c---------a--acactgatgaa
B D                   Gorilla  aaaa---tggat-gggcttctatcaga----ttt------------c---------a--acactgatgaa
B D                 Orangutan  aaaa---tgtat-gggcttctatcaga----ttt------------c---------a--atactgatgaa
B D                    Rhesus  aaaa---tggat-gtgcttctatcagc----ttc--------tatac---------a--acaccaacgaa
B D       Crab-eating macaque  aaaa---tggat-gtgcttctatcagc----ttc--------tatac---------a--acaccaacgaa
B D                    Baboon  aaaa---tggat-gtgcttctatcagc----ttc--------tatac---------a--acaccaacgaa
B D              Green monkey  aaaa---tggat-gtgcttctatcagc----ttc--------tatac---------a--agaccaaggaa
B D                  Marmoset  aaaa---tggat-gggcttctatcagc----tta------------c---------a--acactgac-aa
B D           Squirrel monkey  aaaa---cggat-gggcttctatcagc----ttg------------t---------a--acactgac-aa
B D                  Bushbaby  caaa---ctgct-acacttatgtcagc----taa------------c---------a--aaaaaggcaga
           Chinese tree shrew  aagt---tcga--ggacttggatcagc----cta------------c---------a--gcactggcaaa
B D                  Squirrel  aaaa---tcgat-gggattggctgacc----ctg------------g---------c--aaactc-----
       Lesser Egyptian jerboa  aagg---ttgat-agatttggctccgg----aaa------------c---------a--aaacatgt---
                 Prairie vole  aaaaaattcaag-agatgtggatcggc----caa------------c---------a--acacacatg--
B D           Chinese hamster  aaaa---tcaag-ggacttggatcagc----caa------------c---------a--atacacttg--
               Golden hamster  aaac---tcaag-gaacttggatcagc----caa------------c---------a--atacacttg--
B D                     Mouse  aaaa---tcaag-ggactcaggtcgac----caa------------c---------a--acacacatg--
B D                       Rat  aaaa---tcaag-ggactctgatcagc----cag------------c---------a--acacaca----
B D                    Rabbit  aacg---gatgt-gggcttgggtcaactccgcgg------------g---------g--gaacac-----
B D                       Pig  -------------------------------------------------------------cccggccaa
B D                    Alpaca  -aaa---gtaat-ggacttcaattagc----taa------------c---------a--ac--tggtaaa
               Bactrian camel  -aaa---gtaat-ggacttcaattagc----taa------------c---------a--ac--tggtaaa
B D                   Dolphin  -aat---ctgat-ggacttcaatcagg----tga------------c---------a--gcatgggcaaa
                 Killer whale  -aat---ctgat-ggacttcaatcagg----tga------------c---------a--gcatgggcaaa
             Tibetan antelope  -aat---gcaat-gaacttcaatcagc----taa------------c---------a--acacgggcaaa
B D                       Cow  -aat---acgat-gaacttcaatcagc----taa------------c---------a--acacaggcaaa
B D                     Sheep  -aat---gcgat-gaacttcaatcagc----taa------------c---------a--acacgggcaaa
                Domestic goat  -aat---gcgat-gaacttcaatcagc----taa------------c---------a--acacgggcaaa
B D                     Horse  -aaa---tt-----------------------------------------------a--accctggcaga
B D          White rhinoceros  -caa---ttaat-ggactt-aatcagc----taa------------gaaagctaaca--acactggcaaa
B D                       Cat  aaag---ttaat-gggcttcgatcagc----taa------------c---------accagactggcaaa
B D                       Dog  aaaa---ttaat-ggacttcaggcagc----gaa------------c---------a--cgactgg-gaa
B D                   Ferret   -aaa---ttaatgggatttcaatcagc----tca------------c---------a--agactggcaaa
B D                     Panda  -aaa---ttaatgggacttcgatcagc----taa------------g---------g--agaccggcaaa
               Pacific walrus  -aaa---ttaatgggacttcaatcagc----taa------------c---------a--agaatggcaaa
                 Weddell seal  -aaa---ttaatgggacttcaatcagc----taa------------c---------a--agactggcaaa
             Black flying-fox  -aaa---ctaac-agacttcaatcagc----taa------------c---------a--acactgacaaa
B D                     Shrew  ----------------------------------------------------------------------
              Star-nosed mole  ----------------------------------------------------------------------
B D                  Elephant  aaaa---ttaat-ggatttcaatcagc----taa------------c---------a--atactgccaaa
B D                   Manatee  aaaa---ttaat-ggagttcaatcagc----taa------------c---------a--acactgctgag
B D                    Tenrec  --------------------aatcagc----tga------------t---------a--atgctgccaag
                     Aardvark  aaaa---ttaat-ggactt---------------------------c---------a--gcactgccaaa
B D                 Armadillo  gcca---cgggg-gcactgcaaccagc----caa------------c---------c--acaccggcga-
B D           Tasmanian devil  aaaa---ttaat-gggcccacactagc----agagtgacactgaagg---------a--gcactagcata
B D                   Wallaby  aaaa---ttaat-ggactcagactagc----agaatgacaccggagg---------a--gcactaacata
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ----------------------------------------------------------------------
B D                Guinea pig  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
B D                      Pika  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
B D                    Lizard  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
  D           Green seaturtle  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D       Collared flycatcher  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D        American alligator  ======================================================================
B D                   Opossum  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Gibbon  ----------------------------------------------------------------------
B D                   Megabat  ======================================================================
            Cape golden mole  ----------------------------------------------------------------------

                        Human  ctccagttggggg----gcaggtgcc-agc
                        Chimp  ctccagttggggg----gcaggtgcc-agc
                      Gorilla  ctccagttggggg----gcaggtgcc-agc
                    Orangutan  ctccagttggggg----gcaggtgcc-agc
                       Rhesus  ctccggtt-gggg----gcaggtgcc-agc
          Crab-eating macaque  ctccggtt-gggg----gcaggtgcc-agc
                       Baboon  ctccggtt-gggg----gcaggtgcc-agc
                 Green monkey  ctccggtt-gggg----gcaggtgcc-agc
                     Marmoset  ctcccgtg-gggg----gcaggtgcc-agc
              Squirrel monkey  ctccctag-gggg----gcaggtgcc-agc
                     Bushbaby  ttctgggg-gtgg----acatatgcc-a-t
           Chinese tree shrew  ctgcaggg-gtgg----g------------
                     Squirrel  ---caggg-gtag----acaggtgct-atc
       Lesser Egyptian jerboa  ---caggg---------------gcc-ggc
                 Prairie vole  ccataggt----------------------
              Chinese hamster  ccacaggg-atgg----gcacatgcc-aac
               Golden hamster  ccacaggg-atgg----gcacatgcc-aac
                        Mouse  ccacagag-atgatggcgtacatgcc-aac
                          Rat  ------------------------------
                       Rabbit  ---caggg----------------------
                          Pig  ctccgggg-t--------------------
                       Alpaca  ctccaggg-t--------------------
               Bactrian camel  ctccaggg-t--------------------
                      Dolphin  ccccaagg-t--------------------
                 Killer whale  ctccaagg-t--------------------
             Tibetan antelope  ctccaagg-tta------------------
                          Cow  ctccaagg-tta------------------
                        Sheep  ctccaagg-tta------------------
                Domestic goat  ctccaagg-tta------------------
                        Horse  ctcctggg-gtgg----gtgggtgcc-agc
             White rhinoceros  ctcctggg-ctgg----gtgggtgcc-agc
                          Cat  ctctaggg-gtgg----gcaggcgcc-agc
                          Dog  ctccaggg-gtgg----gcaggtgcc-agc
                      Ferret   ccccaggg-gtgg----gcaggtgcc-agc
                        Panda  ctccaggg-gtgg----gcaggtgcc-aac
               Pacific walrus  ctccagga-gtgg----gtaggtgcc-agc
                 Weddell seal  ctccagga-gtgg----gcaggtgcc-agc
             Black flying-fox  tgccgggg-gtgg----gcaggtgcc-agc
                        Shrew  ---------gtgg----aaaagcaatgaac
              Star-nosed mole  -----tag-gtgg----gcaggcgct-agc
                     Elephant  cttcaggg-gtgg----gcaggtgcc-agc
                      Manatee  cttcaggg-gcag----gcaggtgcc-agc
                       Tenrec  ctttaggg-gggg-cacgaaggtgcc-cgc
                     Aardvark  cttcaggg-gtgg----ggaggtgcc-agc
                    Armadillo  ctccaggg-gcgg----gaggctgtc-gc-
              Tasmanian devil  gaaaagga-cagc----agggctgac----
                      Wallaby  caacagga-cagc----agggccaga----
          Cape elephant shrew  ==============================
                     Hedgehog  ------------------------------
                   Guinea pig  ==============================
             Brush-tailed rat  ==============================
                   Chinchilla  ==============================
                         Pika  ==============================
                Big brown bat  ==============================
                     Microbat  ==============================
         David's myotis (bat)  ==============================
                       Lizard  ==============================
     Chinese softshell turtle  ==============================
               Painted turtle  ==============================
              Green seaturtle  ==============================
                       Turkey  ==============================
                      Chicken  ==============================
                 Mallard duck  ==============================
                       Parrot  ==============================
                   Budgerigar  ==============================
           Tibetan ground jay  ==============================
                  Zebra finch  ==============================
          Medium ground finch  ==============================
       White-throated sparrow  ==============================
          Collared flycatcher  ==============================
             Peregrine falcon  ==============================
                 Saker falcon  ==============================
                  Rock pigeon  ==============================
           American alligator  ==============================
                      Opossum  ==============================
               Naked mole-rat  ==============================
                       Gibbon  ------------------------------
                      Megabat  ==============================
             Cape golden mole  ------------------------------

Alignment block 29 of 129 in window, 33893883 - 33893892, 10 bps 
B D                     Human  cagggctatt
B D                     Chimp  cagggctatt
B D                   Gorilla  cagggctatt
B D                 Orangutan  cagggctatt
B D                    Rhesus  cagggctatt
B D       Crab-eating macaque  cagggctatt
B D                    Baboon  cagggctatt
B D              Green monkey  cagggctatt
B D                  Marmoset  cagggctatt
B D           Squirrel monkey  cagggctatt
B D                  Bushbaby  cagggc----
B D                  Squirrel  ccaggctgtt
       Lesser Egyptian jerboa  caggtctctc
B D           Chinese hamster  cagacctc-a
               Golden hamster  cagggctc-a
B D                     Mouse  cagggctctc
B D                       Rat  ---ggctctt
B D                    Rabbit  ----gccgtt
B D                       Pig  ------tatt
B D                    Alpaca  ------tatt
               Bactrian camel  ------tatt
B D                   Dolphin  ------tatt
                 Killer whale  ------tatt
             Tibetan antelope  ------tatt
B D                       Cow  ------tatt
B D                     Sheep  ------tatt
                Domestic goat  ------tatt
B D                     Horse  cagggtcatt
B D          White rhinoceros  cagggttatt
B D                       Cat  caggattact
B D                       Dog  cagggttatt
B D                   Ferret   cagcgttatt
B D                     Panda  cagggttatt
               Pacific walrus  cagggttatt
                 Weddell seal  cagggttatt
             Black flying-fox  cagggttatt
B D                     Shrew  ttcggccagc
              Star-nosed mole  tagggttatt
B D                  Elephant  cagagctatt
          Cape elephant shrew  cacagttctt
B D                   Manatee  cagaactatt
B D                    Tenrec  cagggttatt
                     Aardvark  caaggctatt
B D                 Armadillo  cggcgctggt
B D           Tasmanian devil  tgactctatt
B D                   Wallaby  tagttctgct
B D                  Hedgehog  ----------
B D                Guinea pig  ==========
            Brush-tailed rat  ==========
                  Chinchilla  ==========
                Prairie vole  ----------
B D                      Pika  ==========
               Big brown bat  ==========
B D                  Microbat  ==========
        David's myotis (bat)  ==========
          Chinese tree shrew  ----------
B D                    Lizard  ==========
  D  Chinese softshell turtle  ==========
  D            Painted turtle  ==========
  D           Green seaturtle  ==========
B D                    Turkey  ==========
B D                   Chicken  ==========
  D              Mallard duck  ==========
  D                    Parrot  ==========
B D                Budgerigar  ==========
          Tibetan ground jay  ==========
B D               Zebra finch  ==========
B D       Medium ground finch  ==========
  D    White-throated sparrow  ==========
  D       Collared flycatcher  ==========
  D          Peregrine falcon  ==========
  D              Saker falcon  ==========
  D               Rock pigeon  ==========
B D        American alligator  ==========
B D                   Opossum  ==========
B D            Naked mole-rat  ==========
B D                    Gibbon  ----------
B D                   Megabat  ==========
            Cape golden mole  ----------

Inserts between block 29 and 30 in window
                    Aardvark 3bp

Alignment block 30 of 129 in window, 33893893 - 33893913, 21 bps 
B D                     Human  aa--ataataaca-ggaggggctg
B D                     Chimp  aa--ataataata-ggaggggctg
B D                   Gorilla  aa--ataataata-ggaggggctg
B D                 Orangutan  aa--gtaataata-ggaggggctg
B D                    Rhesus  aa--ataataata-ggagaggctg
B D       Crab-eating macaque  aa--ataataata-ggagaggctg
B D                    Baboon  aa--ataataata-ggagaggctg
B D              Green monkey  aa--ttaataata-ggagaggctg
B D                  Marmoset  aa--ataataaca-ggaggggcca
B D           Squirrel monkey  aa--ataataaca-ggaggggcca
B D                  Bushbaby  -----taataatt-agatgtggtg
           Chinese tree shrew  ----ataagactg-ggtgcggcc-
B D                  Squirrel  aa--taaggact--ggatagggtg
       Lesser Egyptian jerboa  aagtgtaggact--ggatggggtg
                 Prairie vole  -a--gtagaac------tggggtg
B D           Chinese hamster  aa--gtagggc------tggtgta
               Golden hamster  aa--gtaggac------tgggata
B D                     Mouse  aa--gtaggac------tggagaa
B D                       Rat  aa--gtaggac------tggagaa
B D                    Rabbit  ac--ctaggact--gcagggggct
B D                       Pig  aa--aggaggg-t-gggcggggcg
B D                    Alpaca  aa--ataaggacc-cggtggggtg
               Bactrian camel  aa--ataaggacc-tggtggggtg
B D                   Dolphin  ac--atgaggacc-gggtggggtg
                 Killer whale  ac--atgaggacc-gggtggggtg
             Tibetan antelope  ac--ttgaggacc-agggagggtg
B D                       Cow  ac--atgaggacc-agggaggatg
B D                     Sheep  ac--atgaggacc-agggagggtg
                Domestic goat  ac--atgaggacc-agggagggtg
B D                     Horse  aa--ataaggact-gagtggagtg
B D          White rhinoceros  ca--ataaggactggggtggggtg
B D                       Cat  aa--ataaggaca-----ggggtg
B D                       Dog  aa--atgaggact-----agggtg
B D                   Ferret   aa--ataaggac------------
B D                     Panda  ag--ataaggact-----agggtg
               Pacific walrus  aa--ataaggact-----ggggtg
                 Weddell seal  aa--ataaggact-----ggggtg
             Black flying-fox  aa--ataaggatt--ggtggggtg
B D                     Shrew  tg--ctcacaacc-tgggcagggg
              Star-nosed mole  aa--acaagtact-ggatgcggag
B D                  Elephant  aa--ataagggct-ggat-aagtg
          Cape elephant shrew  aa--atgagaact-agatggggtc
B D                   Manatee  aa--atagggact-ggat-aagtg
             Cape golden mole  aa--ataagaatc-agatggggcg
B D                    Tenrec  ------------c-aga-aaggtg
                     Aardvark  aa--acaaggact-gcatgaagtc
B D                 Armadillo  aa--atgagaaca-ggatgaggag
B D           Tasmanian devil  aa--ataagaaag-gcagagactg
B D                   Wallaby  aa--atgggaaat-gcagagactg
B D                  Hedgehog  ------------------------
B D                Guinea pig  ========================
            Brush-tailed rat  ========================
                  Chinchilla  ========================
B D                      Pika  ========================
               Big brown bat  ========================
B D                  Microbat  ========================
        David's myotis (bat)  ========================
B D                    Lizard  ========================
  D  Chinese softshell turtle  ========================
  D            Painted turtle  ========================
  D           Green seaturtle  ========================
B D                    Turkey  ========================
B D                   Chicken  ========================
  D              Mallard duck  ========================
  D                    Parrot  ========================
B D                Budgerigar  ========================
          Tibetan ground jay  ========================
B D               Zebra finch  ========================
B D       Medium ground finch  ========================
  D    White-throated sparrow  ========================
  D       Collared flycatcher  ========================
  D          Peregrine falcon  ========================
  D              Saker falcon  ========================
  D               Rock pigeon  ========================
B D        American alligator  ========================
B D                   Opossum  ========================
B D            Naked mole-rat  ========================
B D                    Gibbon  ------------------------
B D                   Megabat  ========================

Inserts between block 30 and 31 in window
B D          Tasmanian devil 3133bp
B D                  Wallaby 3795bp

Alignment block 31 of 129 in window, 33893914 - 33893920, 7 bps 
B D                     Human  ccatagg
B D                     Chimp  ccatagg
B D                   Gorilla  ccatagg
B D                 Orangutan  ccatagg
B D                    Rhesus  ccacagg
B D       Crab-eating macaque  ccacagg
B D                    Baboon  ccatagg
B D              Green monkey  ccatagg
B D                  Marmoset  ccataga
B D           Squirrel monkey  ccgtagg
B D                  Bushbaby  tcatcag
           Chinese tree shrew  tgttggg
B D                  Squirrel  tcatagg
       Lesser Egyptian jerboa  tcttagg
                 Prairie vole  tctccgg
B D           Chinese hamster  tcttagg
               Golden hamster  tcttagg
B D                     Mouse  tctttgg
B D                       Rat  cctttgg
B D                    Rabbit  tcgtagg
B D                       Pig  tcatggt
B D                    Alpaca  tcatggt
               Bactrian camel  tcatggt
B D                   Dolphin  tcatggt
                 Killer whale  tcatggt
             Tibetan antelope  ttgtggt
B D                       Cow  -tgtggt
B D                     Sheep  ttgtggt
                Domestic goat  ttgtggt
B D                     Horse  tcatcgt
B D          White rhinoceros  tcatcgt
B D                       Cat  tcat---
B D                       Dog  tcct---
B D                     Panda  tcat---
               Pacific walrus  tcat---
                 Weddell seal  tcat---
             Black flying-fox  tcatagt
B D                     Shrew  tcctagt
              Star-nosed mole  cgatagt
B D                  Elephant  ttacaga
          Cape elephant shrew  tcaaagg
B D                   Manatee  tcataga
             Cape golden mole  tcacagg
B D                    Tenrec  tcataag
                     Aardvark  tcatagg
B D                 Armadillo  tcatagg
B D                  Hedgehog  -------
B D                Guinea pig  =======
            Brush-tailed rat  =======
                  Chinchilla  =======
B D                      Pika  =======
               Big brown bat  =======
B D                  Microbat  =======
        David's myotis (bat)  =======
B D                   Ferret   -------
B D                    Lizard  =======
  D  Chinese softshell turtle  =======
  D            Painted turtle  =======
  D           Green seaturtle  =======
B D                    Turkey  =======
B D                   Chicken  =======
  D              Mallard duck  =======
  D                    Parrot  =======
B D                Budgerigar  =======
          Tibetan ground jay  =======
B D               Zebra finch  =======
B D       Medium ground finch  =======
  D    White-throated sparrow  =======
  D       Collared flycatcher  =======
  D          Peregrine falcon  =======
  D              Saker falcon  =======
  D               Rock pigeon  =======
B D                   Wallaby  =======
B D        American alligator  =======
B D           Tasmanian devil  =======
B D                   Opossum  =======
B D            Naked mole-rat  =======
B D                    Gibbon  -------
B D                   Megabat  =======

Alignment block 32 of 129 in window, 33893921 - 33893929, 9 bps 
B D                     Human  at------ga-cagga
B D                     Chimp  at------ga-cagga
B D                   Gorilla  at------ga-cagga
B D                 Orangutan  at------ga-aatga
B D                    Rhesus  at------ga-aagga
B D       Crab-eating macaque  at------ga-aagga
B D                    Baboon  at------ga-aagga
B D              Green monkey  at------ga-aagga
B D                  Marmoset  -t------ga-aagga
B D           Squirrel monkey  -t------ga-aagtc
B D                  Bushbaby  at------ga-aagga
           Chinese tree shrew  at------aa-aagaa
B D                  Squirrel  gc------aa-gggta
       Lesser Egyptian jerboa  aa------aa-tggaa
                 Prairie vole  at------aa-tagaa
B D           Chinese hamster  atactag-aa-tggag
               Golden hamster  ataataataa-tagaa
B D                     Mouse  at------aattagaa
B D                       Rat  at------aa-tagag
B D                    Rabbit  at------ga-caggg
B D                       Pig  gt------aa-aaggg
B D                    Alpaca  gt------aa-aagga
               Bactrian camel  gt------aa-aagga
B D                   Dolphin  gt------aa-aaggc
                 Killer whale  gt------aa-aaggc
             Tibetan antelope  gt------ag-aaggc
B D                       Cow  gt------ag-aaggc
B D                     Sheep  gt------ag-aaggc
                Domestic goat  gt------ag-aaggc
B D                     Horse  gt------aa-aagga
B D          White rhinoceros  gt------aa-aagga
             Black flying-fox  gt------ga-aaaa-
B D                  Hedgehog  at------aa-aaggc
B D                     Shrew  ataa----aa-aagca
              Star-nosed mole  at------cg-gagga
B D                  Elephant  at------ga-aaggg
          Cape elephant shrew  ct------aa-aagga
B D                   Manatee  at------ga-aagga
             Cape golden mole  at------aa-aag--
B D                    Tenrec  gt------aa-aggac
                     Aardvark  at------aa-aagga
B D                 Armadillo  ac------ag-gagga
B D                Guinea pig  ================
            Brush-tailed rat  ================
                  Chinchilla  ================
B D                      Pika  ================
                Weddell seal  ----------------
B D                     Panda  ----------------
               Big brown bat  ================
B D                  Microbat  ================
        David's myotis (bat)  ================
B D                       Dog  ----------------
B D                   Ferret   ----------------
B D                       Cat  ----------------
              Pacific walrus  ----------------
B D                    Lizard  ================
  D  Chinese softshell turtle  ================
  D            Painted turtle  ================
  D           Green seaturtle  ================
B D                    Turkey  ================
B D                   Chicken  ================
  D              Mallard duck  ================
  D                    Parrot  ================
B D                Budgerigar  ================
          Tibetan ground jay  ================
B D               Zebra finch  ================
B D       Medium ground finch  ================
  D    White-throated sparrow  ================
  D       Collared flycatcher  ================
  D          Peregrine falcon  ================
  D              Saker falcon  ================
  D               Rock pigeon  ================
B D                   Wallaby  ================
B D        American alligator  ================
B D           Tasmanian devil  ================
B D                   Opossum  ================
B D            Naked mole-rat  ================
B D                    Gibbon  ----------------
B D                   Megabat  ================

Inserts between block 32 and 33 in window
B D                      Pig 2bp
B D                   Alpaca 2bp
              Bactrian camel 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 4bp
B D                      Cow 12bp
B D                    Sheep 4bp
               Domestic goat 4bp
B D                    Horse 2bp
B D         White rhinoceros 2bp
            Black flying-fox 6bp
B D                 Hedgehog 3bp
B D                    Shrew 3bp
             Star-nosed mole 3bp

Alignment block 33 of 129 in window, 33893930 - 33893936, 7 bps 
B D                     Human  ------tg-gggga
B D                     Chimp  ------tg-gggga
B D                   Gorilla  ------tg-gggga
B D                 Orangutan  ------tg-gggga
B D                    Rhesus  ------tg-gggga
B D       Crab-eating macaque  ------tg-gggga
B D                    Baboon  ------tg-gggga
B D              Green monkey  ------tg-gggga
B D                  Marmoset  ------ag-gagga
B D           Squirrel monkey  ------tg-gagaa
B D                  Bushbaby  ------tg-caggg
           Chinese tree shrew  ------gg-gggt-
B D                  Squirrel  ------tg-gggga
       Lesser Egyptian jerboa  ------cg-gagaa
                 Prairie vole  ------tg------
B D           Chinese hamster  ------tgttgggg
               Golden hamster  ------tg-gaggg
B D                     Mouse  ------tg-gagaa
B D                       Rat  ------tg-gagga
B D                    Rabbit  ------ca-agggg
B D                       Pig  ------ag-ca---
B D                    Alpaca  ------ca-ga---
               Bactrian camel  ------ca-ga---
B D                   Dolphin  ------ag-ga---
                 Killer whale  ------ag-ga---
             Tibetan antelope  ------gg-ga---
B D                       Cow  ------gg-ga---
B D                     Sheep  ------gg-ga---
                Domestic goat  ------gg-ga---
B D                     Horse  ------gg-ga---
B D          White rhinoceros  ------gg-ga---
B D                       Cat  ------aa-aa---
B D                       Dog  ------aa-aa---
B D                     Panda  ------aa-aa---
               Pacific walrus  ------aa-ga---
                 Weddell seal  ------aa-ga---
             Black flying-fox  ------ag-gg---
B D                  Microbat  ------gg-tg---
B D                  Hedgehog  ------ag-gc---
B D                     Shrew  ------ga-ga---
              Star-nosed mole  ------gg-ga---
B D                  Elephant  tggg-gga------
          Cape elephant shrew  tgggagaa------
B D                   Manatee  tggg-gga------
B D                    Tenrec  c----gaa------
                     Aardvark  tgaa-gga------
B D                 Armadillo  tg---gga------
B D                Guinea pig  ==============
            Brush-tailed rat  ==============
                  Chinchilla  ==============
B D                      Pika  ==============
               Big brown bat  ==============
        David's myotis (bat)  ==============
B D                   Ferret   --------------
B D                    Lizard  ==============
  D  Chinese softshell turtle  ==============
  D            Painted turtle  ==============
  D           Green seaturtle  ==============
B D                    Turkey  ==============
B D                   Chicken  ==============
  D              Mallard duck  ==============
  D                    Parrot  ==============
B D                Budgerigar  ==============
          Tibetan ground jay  ==============
B D               Zebra finch  ==============
B D       Medium ground finch  ==============
  D    White-throated sparrow  ==============
  D       Collared flycatcher  ==============
  D          Peregrine falcon  ==============
  D              Saker falcon  ==============
  D               Rock pigeon  ==============
B D                   Wallaby  ==============
B D        American alligator  ==============
B D           Tasmanian devil  ==============
B D                   Opossum  ==============
B D            Naked mole-rat  ==============
B D                    Gibbon  --------------
B D                   Megabat  ==============
            Cape golden mole  --------------

Inserts between block 33 and 34 in window
B D                 Bushbaby 2bp

Alignment block 34 of 129 in window, 33893937 - 33893979, 43 bps 
B D                     Human  gggtggggaggggaagaggaa-gggga----------------------------cgtg-----------
B D                     Chimp  gggtggggaggggaagaggaa-gggga----------------------------cgtg-----------
B D                   Gorilla  gggtggggaggggaagaggaa-gggga----------------------------cgtg-----------
B D                 Orangutan  gggtgggaaggggaagaggaa-gggga----------------------------cgtg-----------
B D                    Gibbon  gggtggggaggggaagaggaa-gggga----------------------------cgtg-----------
B D                    Rhesus  gggtggggaggggaagaggaa-gggga----------------------------catg-----------
B D       Crab-eating macaque  gggtggggaggggaagaggaa-gggga----------------------------catg-----------
B D                    Baboon  gggtggggaggggaagaggaa-gggga----------------------------catg-----------
B D              Green monkey  gggtgaggaggggaagaggaa-gggga----------------------------catg-----------
B D                  Marmoset  gggtggggaggggaaaaggaa-gggga----------------------------cgtg-----------
B D           Squirrel monkey  gggtggggaggggaaaaggga-gggga----------------------------cgtg-----------
B D                  Bushbaby  tgtgggggagggggagagggt-gggtg----------------------------tctggggcctaaatc
           Chinese tree shrew  gcgtttggaggggaagagg---------------------------------------g-----------
B D                  Squirrel  -----------aggatctgga-gggga-------------------------------------------
       Lesser Egyptian jerboa  gcgttt----tggaa---gga-gggga-------------------------------------------
B D           Chinese hamster  ----------------------ggggtgcgc--------------cacagtc--a---------------
               Golden hamster  ----------------------gaggtggg------------------aatc------------------
B D                     Mouse  ttctc-------------agt-gaggt-------------------------------------------
B D                       Rat  tcctc-------------agt-ggggt-------------------------------------------
B D                    Rabbit  ------------gaagacggt-gggggggacgctccaaaaagaggcctggcccca---------------
B D                       Pig  gagcatgaaggg-aagaggcc-gaggt----------------------------ggc------------
B D                    Alpaca  gggcttgaaggc-aagaggag-gaggc----------------------------agcg-----------
               Bactrian camel  gggcttgaaggc-aagaggag-gaggc----------------------------ggtg-----------
B D                   Dolphin  gggcttgaaggg-aagagggt-gaagc----------------------------agtg-----------
                 Killer whale  gggcttgcaggg-aagagggt-gaagc----------------------------agtg-----------
             Tibetan antelope  gggcttgaaggg-aagagggt-ggggc----------------------------agtg-----------
B D                       Cow  gtgcttgaaggg-aagagggt-ggggc----------------------------aatg-----------
B D                     Sheep  gggcttgaaggg-aagagggtgggggc----------------------------agtg-----------
                Domestic goat  gggcttgaaggg-aagagggt-ggggc----------------------------agtg-----------
B D                     Horse  gggtttgaaggggaagagggt-gaggc----------------------------agtg-----------
B D          White rhinoceros  gggcttggaggggaagagggt-ggggc----------------------------g--------------
B D                       Cat  gtttttggagggaaagagggtgggggt----------------------------a--------------
B D                       Dog  gggctcggaggggaagtaggt-gaggt----------------------------g--------------
B D                   Ferret   -----tggaggggaagtgggt-gggat----------------------------g--------------
B D                     Panda  gggcttggaggggaagtgggt-ggggt----------------------------g--------------
               Pacific walrus  gggcttggaggggaagcggtt-gggtt----------------------------g--------------
                 Weddell seal  gggcttggaggggaagcggat-gggtt----------------------------g--------------
             Black flying-fox  atacttgaaggggaagagggt-ggggt----------------------------ggtg-----------
B D                  Microbat  cgaaatgttgggggagggggt-g-----------------------------------------------
B D                  Hedgehog  gggtttggaagggaaaagggt--gc-g----------------------------aggt-----------
B D                     Shrew  ggcttcagaagggaggagggt-ggggg----------------------------agag-----------
              Star-nosed mole  gggtttgga---gaagaaggt--gcag----------------------------agag-----------
B D                  Elephant  gagtttgaaggggaagagggt-aggga----------------------------ggtg-----------
          Cape elephant shrew  gcgtttgcagagaagaaaggt-ggaga----------------------------tgtg-----------
B D                   Manatee  gagtttgaaggggaagagggt-gggga----------------------------agtg-----------
             Cape golden mole  ------gaaggggaagagggt-gggaa----------------------------ggtg-----------
B D                    Tenrec  agggttgaaaggagaaggggg-gcggg----------------------------ggga-----------
                     Aardvark  atgtttgaaggggaagaggt-----gt----------------------------agta-----------
B D                 Armadillo  gggcttggagggaaggagcg--ggcga----------------------------gatg-----------
B