Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 473 in window, 25900116 - 25900147, 32 bps 
B D                     Human  tt-gc----t---------------------------acagcagt--ac------a--------------
B D                     Chimp  tt-gc----t---------------------------acagcagc--ac------a--------------
B D                   Gorilla  tt-gc----t---------------------------acagcagc--ac------a--------------
B D                 Orangutan  tt-gc----t---------------------------acagcagc--ac------a--------------
B D                    Gibbon  tt-gc----t---------------------------acagcagc--ac------a--------------
B D                    Rhesus  tt-gc----t---------------------------acagcagt--ac------a--------------
B D       Crab-eating macaque  tt-gc----t---------------------------acagcagt--ac------a--------------
B D                    Baboon  tt-gc----t---------------------------acagcagc--ac------a--------------
B D              Green monkey  tt-gc----t---------------------------acagcagc--ac------a--------------
B D                  Marmoset  tt-ac----t---------------------------acagcagc--ac------a--------------
B D           Squirrel monkey  tt-ac----t---------------------------acagcagc--ac------a--------------
B D                  Bushbaby  tt-gc----t---------------------------acagcagc--ac------a--------------
           Chinese tree shrew  ttggt----t---------------------------acagaggc--ac------a--------------
B D                  Squirrel  tt-gt----t---------------------------ccagcagc--ac------a--------------
       Lesser Egyptian jerboa  tc-acacatt---------------------------acagcagc--ac------a--------------
B D           Chinese hamster  tc-ac---------------------------------------c--ac------a--------------
               Golden hamster  tc-ac---------------------------------------c--ac------a--------------
B D                     Mouse  tc-ac----g---------------------------agaacagc--ac------a--------------
B D                       Rat  tc-ac----t---------------------------acagcagc--ac------a--------------
B D                Guinea pig  ct-gc----t---------------------------aaagcaac--ac------a--------------
                   Chinchilla  ct-gc----t---------------------------aaagcaac--ac---ca-a--------------
             Brush-tailed rat  tt-gc----t---------------------------aaagcaac--acacacaca--------------
B D                    Rabbit  tg-gg----g---------------------------aca------------------------------
B D                       Pig  tt-gc----t---------------------------acagtggc--ac------a--------------
B D                    Alpaca  tt-gt----g---------------------------atagtggc--ac------a--------------
               Bactrian camel  tt-gt----g---------------------------atagtggc--ac------a--------------
B D                   Dolphin  ct-gc----t---------------------------atagtggt--cc------a--------------
                 Killer whale  ct-gc----t---------------------------atagtggt--cc------a--------------
             Tibetan antelope  tt-gc----t---------------------------agaggggt--ac------a--------------
B D                       Cow  tt-gc----t---------------------------agaggggt--ac------a--------------
B D                     Sheep  tt-gc----t---------------------------agaggggt--ac------a--------------
                Domestic goat  tt-gc----t---------------------------agaggggt--ac------a--------------
B D                     Horse  tt-gc----t---------------------------------gc--aa------a--------------
B D          White rhinoceros  tt-cc----t---------------------------acagtggc--ac------a--------------
B D                       Cat  tt-gc----t---------------------------acatgggc--gc------a--------------
B D                       Dog  tt-gt----t---------------------------acatgggc--cc------a--------------
B D                   Ferret   tt-gc----t---------------------------gcatgggc--cc------a--------------
B D                     Panda  tt-gc----t---------------------------acgtgggc--cc------a--------------
               Pacific walrus  tt-gc----t---------------------------acgtgggc--cc------a--------------
                 Weddell seal  tt-gc----t---------------------------acgtgggc--cc------a--------------
             Black flying-fox  at-gc----t---------------------------acagggac--ac------a--------------
B D                   Megabat  tt-gc----t---------------------------acagggac--ac------a--------------
                Big brown bat  tt-gc----t---------------------------acaggggc--ac------a--------------
         David's myotis (bat)  tt-gc----c---------------------------acaggggc--ac------a--------------
B D                  Microbat  tt-gc----t---------------------------acaggggc--ac------a--------------
B D                  Hedgehog  ct-gc----c---------------------------atagtagc--ac------a--------------
              Star-nosed mole  ct-gc----t---------------------------agagtgtttgac------a--------------
B D                  Elephant  tt-gc----t---------------------------acaccaac--ac------a--------------
          Cape elephant shrew  gt-tc----t---------------------------gcagtagc-------------------------
B D                   Manatee  tt-gc----t---------------------------acagcaac--ac------a--------------
             Cape golden mole  tt-gc----t---------------------------ccagcagc--ac------a--------------
B D                    Tenrec  tg-gc----tggtgttttcaatctgctgacctctgggctagtagc--ct------acgtgaaaccactct
                     Aardvark  ct-gc----t---------------------------agagcagc--ac------a--------------
B D                 Armadillo  tt-gc----t---------------------------atagcaac--ac------a--------------
  D             Scarlet macaw  tc-ac----t---------------------------ggggcag---gc------t--------------
  D            Painted turtle  ta-ca----t---------------------------ggtaagt---ac------t--------------
                Prairie vole  ======================================================================
B D                      Pika  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ======================================================================
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D           Tasmanian devil  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D                 Zebrafish  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
B D                Budgerigar  ======================================================================
B D            Naked mole-rat  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D                    Parrot  ======================================================================
  D  Chinese softshell turtle  ======================================================================

                        Human  -----------------taaagttttat--------------t-aat-a
                        Chimp  -----------------taaagttttat--------------t-aat-a
                      Gorilla  -----------------taaagttttat--------------t-aat-a
                    Orangutan  -----------------taaagttttat--------------t-aat-a
                       Gibbon  -----------------tgaagttttat--------------t-aa---
                       Rhesus  -----------------taaagttttat--------------t-aat-a
          Crab-eating macaque  -----------------taaagttttat--------------t-aat-a
                       Baboon  -----------------taaagttttat--------------t-aat-a
                 Green monkey  -----------------taaagttttat--------------t-aat-a
                     Marmoset  -----------------gaaaattttat--------------t-aat-a
              Squirrel monkey  -----------------gaaaattttat--------------t-aat-a
                     Bushbaby  -----------------gatagttttat--------------t-aac-a
           Chinese tree shrew  -----------------gaaagctctac--------------t-a----
                     Squirrel  -----------------aaaagtgtcat--------------t-agt-a
       Lesser Egyptian jerboa  -----------------a--agttttat--------------t-agt-a
              Chinese hamster  -----------------gccagttttat--------------g-agt-a
               Golden hamster  -----------------gccagttttgt--------------g-agt-a
                        Mouse  -----------------attaggttcct--------------g-agc-a
                          Rat  -----------------aagagttttct--------------g-agt-a
                   Guinea pig  -----------------aa---ctgcat--------------c-agt-t
                   Chinchilla  -----------------aaaatttttat--------------t-agt-a
             Brush-tailed rat  -----------------aaaatatttat--------------t-tgt-a
                       Rabbit  -------------------------------------------------
                          Pig  -----------------gaaagttctat--------------t-aat-c
                       Alpaca  -----------------gaaagctttac--------------t-aat-c
               Bactrian camel  -----------------gaaagttttac--------------t-aat-c
                      Dolphin  -----------------caaggttttac--------------t-act-c
                 Killer whale  -----------------caaggttttac--------------t-act-c
             Tibetan antelope  -----------------gaaagttttac--------------t-aat-c
                          Cow  -----------------gaaagttttac--------------t-aat-c
                        Sheep  -----------------gaaagttttac--------------t-aat-c
                Domestic goat  -----------------gaaagttttac--------------t-aat-c
                        Horse  -----------------gaaa---------------------------a
             White rhinoceros  -----------------gaaagttttat--------------t-aat-a
                          Cat  -----------------gaggattagac--------------g-aat-a
                          Dog  -----------------gaaaattatat--------------t-aat-a
                      Ferret   -----------------gagaatgatag--------------caaat-a
                        Panda  -----------------gaga---atat--------------taaat-a
               Pacific walrus  -----------------cagaatgatat--------------taaat-a
                 Weddell seal  -----------------gagaatgatat--------------taaat-a
             Black flying-fox  -----------------gcaagttttat--------------t-aat-a
                      Megabat  -----------------gcaagttttat--------------t-aat-a
                Big brown bat  -----------------gaaagttttat--------------g-aat-a
         David's myotis (bat)  -----------------gaaaattttat--------------g-aat-a
                     Microbat  -----------------gaaagttttat--------------g-aat-a
                     Hedgehog  -----------------gaaagtcttat--------------t-act-a
              Star-nosed mole  -----------------gaaagttttaa--------------t-at---
                     Elephant  -----------------gaaagctttat-----------tagt-aat-a
          Cape elephant shrew  ----------------------------------------aat-att-a
                      Manatee  -----------------gaaagttttat-----------taat-aat-a
             Cape golden mole  -----------------taacattttat-----------taat-cat-a
                       Tenrec  gcaccaggatccctgtgtagcagttgctacaacgatgaacagt-catcg
                     Aardvark  -----------------ggaagttttat--------------t-aat-a
                    Armadillo  --------------------ggttttac--------------t-aat-a
                Scarlet macaw  -----------------gaggatcccag--------------c-act-g
               Painted turtle  -----------------ggaagtctcga--------------t-aag-a
                 Prairie vole  =================================================
                         Pika  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Shrew  =================================================
                   Coelacanth  =================================================
       Spiny softshell turtle  =================================================
                  Spotted gar  =================================================
                  Stickleback  =================================================
           Southern platyfish  =================================================
       Yellowbelly pufferfish  =================================================
                         Fugu  =================================================
                    Tetraodon  =================================================
                       Turkey  =================================================
                      Chicken  =================================================
                 Mallard duck  =================================================
           Tibetan ground jay  =================================================
                  Zebra finch  =================================================
       White-throated sparrow  =================================================
              Tasmanian devil  =================================================
     Mexican tetra (cavefish)  =================================================
                    Zebrafish  =================================================
                       Medaka  =================================================
          Pundamilia nyererei  =================================================
                  Zebra mbuna  =================================================
        Burton's mouthbreeder  =================================================
          Princess of Burundi  =================================================
                 Nile tilapia  =================================================
              Green seaturtle  =================================================
           American alligator  =================================================
                   Budgerigar  =================================================
               Naked mole-rat  =================================================
                  Rock pigeon  =================================================
          Collared flycatcher  =================================================
          Medium ground finch  =================================================
                       Lizard  =================================================
             Peregrine falcon  =================================================
                 Saker falcon  =================================================
                       Parrot  =================================================
     Chinese softshell turtle  =================================================

Inserts between block 1 and 2 in window
  D            Scarlet macaw 7bp

Alignment block 2 of 473 in window, 25900148 - 25900171, 24 bps 
B D                     Human  ttctg-att---------ctcgtgt--cat-agcttt
B D                     Chimp  ttctg-att---------ctcgcgt--cat-agcttt
B D                   Gorilla  ttctg-att---------ctcgcgt--cat-agcttt
B D                 Orangutan  ttctg-att---------ctcgcgt--cat-agcttt
B D                    Gibbon  -tctg-att---------ctcgcgt--cat-agcttt
B D                    Rhesus  ttctg-att---------ctcgtgt--cgt-cgtttt
B D       Crab-eating macaque  ttctg-att---------ctcgtgt--cgt-cgtttt
B D                    Baboon  ttctg-att---------ctcgcgt--cgt-cgtttt
B D              Green monkey  ttctg-att---------ctcg-----cgt-cgtttt
B D                  Marmoset  ttctg-att---------cttgcat--cac-agctgt
B D           Squirrel monkey  ttccg-att---------ctggcat--cac-agttgt
B D                  Bushbaby  ctctg-att---------tttgagt--cac-agcttc
           Chinese tree shrew  ctctg-cag---------cgcaagt--ctt-ggctta
B D                  Squirrel  tcctg--------------tcgatt--tat-cactct
       Lesser Egyptian jerboa  ttccg-att---------ctcaaga--cat-cgcata
B D           Chinese hamster  ttcag-aat---------ctcaaga--cat-cactta
               Golden hamster  ctcac-aat---------ctcaaga--cat-cactta
B D                     Mouse  ttctgaaat---------ctcagga--tgt-cgctt-
B D                       Rat  gcctg-aat---------ctcagta--tgt-cgcttc
B D                Guinea pig  ttcca-a-----------cttgagactcat-cctt--
                   Chinchilla  tttca-act---------cttaaatctcat-cctt--
             Brush-tailed rat  ttcca-ctt---------cttgaatctcac-tgct--
B D                       Pig  ttttg-att---------ctcaagt--cat-ggctcc
B D                    Alpaca  ttctg-atg---------cttaagt--cac-agctcc
               Bactrian camel  ttctg-att---------cttaagt--cac-agctcc
B D                   Dolphin  ttttg-att---------cttgaga--aat-ggctcc
                 Killer whale  ttttg-att---------cttgaga--aat-ggctcc
             Tibetan antelope  ttttg-att---------cctgaga--aat-ggttcc
B D                       Cow  ttttg-att---------cttgaga--aac-ggttcc
B D                     Sheep  ttttg-att---------cctgaaa--aat-ggttcc
                Domestic goat  ttttg-att---------cctgaaa--aat-ggttcc
B D                     Horse  ttctg-att---------cttgagt--caagagcttc
B D          White rhinoceros  ttctg-att---------cttgact--cac-agcttc
B D                       Cat  ttccc-act---------ttggagt--cat-ggcttc
B D                       Dog  ttcca-att---------ttggaat--cac-agcttc
B D                   Ferret   ttccg-att---------ttggagt--ctt-ggcttc
B D                     Panda  ttcca-att---------ttggagt--cat-ggcttc
               Pacific walrus  ttcca-att---------ttggagt--cat-ggcttc
                 Weddell seal  ttcca-att---------ttggagt--cat-ggcttc
             Black flying-fox  ttctg-att---------cctgagt--cat-agcttt
B D                   Megabat  ttctg-att---------cctgagt--cat-agcttt
                Big brown bat  ttcca-att---------cttgagt--cat-agcttc
         David's myotis (bat)  ttcca-att---------cttgagt--cat-aggttc
B D                  Microbat  ttcca-att---------cttgagt--cat-aggttc
B D                  Hedgehog  -tcac-aat---------cttgagt--c---agtttc
              Star-nosed mole  -tcca-att---------cctgagt--cat-agcttc
B D                  Elephant  ttttg-att---------cctgagt--cat-agcttc
          Cape elephant shrew  ttctg-att---------cttga-----at-agtttc
B D                   Manatee  tttta-act---------cttaagt--cat-agtttc
             Cape golden mole  ttttg-att---------cttgagt--tgt-agcttc
B D                    Tenrec  tcttg-acc---------ctagagc--cat-agcttc
                     Aardvark  ttttg-att---------cttaagt--cac-agcttc
B D                 Armadillo  tttcg-att---------ctcaagt--cac-agcctc
  D                    Parrot  ttctg-cct---------cctgtgc--tct-ga----
  D             Scarlet macaw  ttctg-cct---------cctatgc--tcc-ga----
  D            Painted turtle  ---tg-cccatttttaaatttaaac--ctt-tt----
                Prairie vole  =====================================
B D                      Pika  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  =====================================
B D                    Rabbit  -------------------------------------
B D                Coelacanth  =====================================
  D    Spiny softshell turtle  =====================================
                 Spotted gar  =====================================
B D               Stickleback  =====================================
          Southern platyfish  =====================================
      Yellowbelly pufferfish  =====================================
B D                      Fugu  =====================================
B D                 Tetraodon  =====================================
B D                    Turkey  =====================================
B D                   Chicken  =====================================
  D              Mallard duck  =====================================
          Tibetan ground jay  =====================================
B D               Zebra finch  =====================================
  D    White-throated sparrow  =====================================
B D           Tasmanian devil  =====================================
    Mexican tetra (cavefish)  =====================================
B D                 Zebrafish  =====================================
B D                    Medaka  =====================================
         Pundamilia nyererei  =====================================
                 Zebra mbuna  =====================================
       Burton's mouthbreeder  =====================================
         Princess of Burundi  =====================================
B D              Nile tilapia  =====================================
  D           Green seaturtle  =====================================
B D        American alligator  =====================================
B D                Budgerigar  =====================================
B D            Naked mole-rat  =====================================
  D               Rock pigeon  =====================================
  D       Collared flycatcher  =====================================
B D       Medium ground finch  =====================================
B D                    Lizard  =====================================
  D          Peregrine falcon  =====================================
  D              Saker falcon  =====================================
  D  Chinese softshell turtle  =====================================

Inserts between block 2 and 3 in window
B D               Guinea pig 1bp
                  Chinchilla 1bp
            Brush-tailed rat 103bp

Alignment block 3 of 473 in window, 25900172 - 25900174, 3 bps 
B D                     Human  tat
B D                     Chimp  tat
B D                   Gorilla  tat
B D                 Orangutan  tat
B D                    Gibbon  tac
B D                    Rhesus  tat
B D       Crab-eating macaque  tat
B D                    Baboon  tat
B D              Green monkey  tat
B D                  Marmoset  tag
B D           Squirrel monkey  tag
B D                  Bushbaby  aat
           Chinese tree shrew  cac
B D                  Squirrel  -at
       Lesser Egyptian jerboa  tat
B D           Chinese hamster  gaa
               Golden hamster  gaa
B D                     Mouse  -gc
B D                       Rat  -aa
B D                Guinea pig  tat
                   Chinchilla  tat
             Brush-tailed rat  tat
B D                       Pig  taa
B D                    Alpaca  tgt
               Bactrian camel  tgt
B D                   Dolphin  tat
                 Killer whale  tat
             Tibetan antelope  taa
B D                       Cow  taa
B D                     Sheep  taa
                Domestic goat  taa
B D                     Horse  tat
B D          White rhinoceros  tat
B D                       Cat  ttc
B D                       Dog  tat
B D                   Ferret   tac
B D                     Panda  tat
               Pacific walrus  tat
                 Weddell seal  tat
             Black flying-fox  cat
B D                   Megabat  cat
                Big brown bat  cat
         David's myotis (bat)  cat
B D                  Microbat  cat
B D                  Hedgehog  ttt
              Star-nosed mole  tac
B D                  Elephant  tat
          Cape elephant shrew  tat
B D                   Manatee  tat
             Cape golden mole  tac
B D                    Tenrec  tat
                     Aardvark  tgt
B D                 Armadillo  tat
  D                    Parrot  cac
  D             Scarlet macaw  cac
  D            Painted turtle  tgt
                Prairie vole  ===
B D                      Pika  NNN
B D                     Shrew  ===
B D                    Rabbit  ---
B D                Coelacanth  ===
  D    Spiny softshell turtle  ===
                 Spotted gar  ===
B D               Stickleback  ===
          Southern platyfish  ===
      Yellowbelly pufferfish  ===
B D                      Fugu  ===
B D                 Tetraodon  ===
B D                    Turkey  ===
B D                   Chicken  ===
  D              Mallard duck  ===
          Tibetan ground jay  ===
B D               Zebra finch  ===
  D    White-throated sparrow  ===
B D           Tasmanian devil  ===
    Mexican tetra (cavefish)  ===
B D                 Zebrafish  ===
B D                    Medaka  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
         Princess of Burundi  ===
B D              Nile tilapia  ===
  D           Green seaturtle  ===
B D        American alligator  ===
B D                Budgerigar  ===
B D            Naked mole-rat  ===
  D               Rock pigeon  ===
  D       Collared flycatcher  ===
B D       Medium ground finch  ===
B D                    Lizard  ===
  D          Peregrine falcon  ===
  D              Saker falcon  ===
  D  Chinese softshell turtle  ===

Alignment block 4 of 473 in window, 25900175 - 25900196, 22 bps 
B D                     Human  gg---------cagg----aaag-gat-----gagga---------------catg
B D                     Chimp  gg---------cagg----aaag-gat-----gagga---------------catg
B D                   Gorilla  gg---------cagg----aaag-gat-----gagga---------------catg
B D                 Orangutan  gg---------cagg----aaag-gat-----gagga---------------catg
B D                    Gibbon  gg---------cagg----aaag-gat-----gagga---------------catg
B D                    Rhesus  gg---------cagg----aaag-gat-----gagga---------------catg
B D       Crab-eating macaque  gg---------cagg----aaag-gat-----gagga---------------catg
B D                    Baboon  gg---------cagg----aaag-gat-----gagga---------------catg
B D              Green monkey  gg---------cagg----aaag-gat-----gagga---------------catg
B D                  Marmoset  gg---------cagg----aaag-gat-----gagga---------------taca
B D           Squirrel monkey  ga---------cagg----aaag-ggt-----gagga---------------taca
B D                  Bushbaby  gg---------cagg----aaag-tat-----cagga---------------caca
           Chinese tree shrew  ga---------caga----gagg-cat-----tagga---------------cacg
B D                  Squirrel  gg---------aagg----aaag-ttt-----tacga---------------tgca
       Lesser Egyptian jerboa  gg---------aaggatagatag-tat-----taggt---------------taca
B D           Chinese hamster  gg---------agga------ag-cat-----tagct---------------ggca
               Golden hamster  gg---------aagg------ag-cat-----tagtt---------------ggca
B D                     Mouse  gg---------aagg------ga-cat-----agggt---------------gcac
B D                       Rat  gg---------aagg------aa-cat-----aagta---------------gtga
B D                Guinea pig  gg---------aagt----atag-tat-----tatgt---------------tg--
                   Chinchilla  ag---------acat----atac-tat-----taggt---------------tg--
             Brush-tailed rat  agctgagaccagcct----gggc-tac-----aaagtgaggccagcctgaactg--
B D                    Rabbit  ---------------cggcaaag-cat-----taggg---------------ggca
B D                       Pig  gg---------caag----aaag-aat-----tagga---------------t--g
B D                    Alpaca  ga---------cag--------------------gaa---------------tgca
               Bactrian camel  gg---------cag--------------------gaa---------------tgca
B D                   Dolphin  gg---------cagg----aaag-cat-----tagga---------------ttca
                 Killer whale  gg---------cagg----aaag-cat-----tagga---------------ttca
             Tibetan antelope  gg---------cagg----caag-tgt-----tagga---------------ttca
B D                       Cow  gg---------cagg----caag-tgt-----tagga---------------ttca
B D                     Sheep  gg---------cagg----caag-tgt-----tagga---------------ttca
                Domestic goat  gg---------cagg----caag-tgt-----tagga---------------ttca
B D                     Horse  gg---------cagg----aaag-tat-----tacga---------------cgca
B D          White rhinoceros  ag---------cagg----aaag-tat-----tagga---------------cgca
B D                       Cat  gg---------cagt----aaag-cac-----tggag---------------ggca
B D                       Dog  gg---------cagg----aaag-tat----caagag---------------gaca
B D                   Ferret   gg---------cagg----aaag-tat-----gacag---------------gtcc
B D                     Panda  gg---------cagg---aaaag-tat-----gagag---------------gaca
               Pacific walrus  gg---------cagg----aaag-tat-----gagag---------------aaca
                 Weddell seal  gg---------cagg----gaag-tat-----gagag---------------aaca
             Black flying-fox  gg---------cagg----aaaa-tat-----tagga---------------tata
B D                   Megabat  gg---------cagg----aaaa-tat-----tagga---------------taca
                Big brown bat  ag---------cagg----aaac-ggt-----taata---------------tgca
         David's myotis (bat)  ag---------cagg----aaac-ggt-----taata---------------tgca
B D                  Microbat  ag---------cagg----aaac-ggt-----taata---------------tgca
B D                  Hedgehog  gg---------cagg----caaa-aa---------gg---------------taga
              Star-nosed mole  ca---------cagg----aaaa-tac-----tgggg---------------caca
B D                  Elephant  gg---------tagg----caag-tat-----taggg---------------caca
          Cape elephant shrew  gg---------caaa-ttttacc-tat-----cagga---------------taca
B D                   Manatee  gg---------taga----atag-tat-----tagga---------------caca
             Cape golden mole  ga---------cagg----aaag-tat-----ttaga---------------tgta
B D                    Tenrec  gg---------cagg----aaag-tat-----t--gt---------------tata
                     Aardvark  ga---------cagg----gaca-tac-----tagga---------------tgaa
B D                 Armadillo  aa---------cagg----aaaactat-----tagga---------------tgca
B D                  Platypus  gg---------gagg----aaag-cgg-----gggga---------------aaga
  D                    Parrot  ------------------cgcag-gat----gcagga---------------caca
  D             Scarlet macaw  ------------------cgcag-ggt----gcggga---------------caca
  D            Painted turtle  ------------------cattg-gattagagaagtg---------------caag
                Prairie vole  ========================================================
B D                      Pika  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Shrew  ========================================================
B D                Coelacanth  ========================================================
  D    Spiny softshell turtle  ========================================================
                 Spotted gar  ========================================================
B D               Stickleback  ========================================================
          Southern platyfish  ========================================================
      Yellowbelly pufferfish  ========================================================
B D                      Fugu  ========================================================
B D                 Tetraodon  ========================================================
B D                    Turkey  ========================================================
B D                   Chicken  ========================================================
  D              Mallard duck  ========================================================
          Tibetan ground jay  ========================================================
B D               Zebra finch  ========================================================
  D    White-throated sparrow  ========================================================
B D           Tasmanian devil  ========================================================
    Mexican tetra (cavefish)  ========================================================
B D                 Zebrafish  ========================================================
B D                    Medaka  ========================================================
         Pundamilia nyererei  ========================================================
                 Zebra mbuna  ========================================================
       Burton's mouthbreeder  ========================================================
         Princess of Burundi  ========================================================
B D              Nile tilapia  ========================================================
  D           Green seaturtle  ========================================================
B D        American alligator  ========================================================
B D                Budgerigar  ========================================================
B D            Naked mole-rat  ========================================================
  D               Rock pigeon  ========================================================
  D       Collared flycatcher  ========================================================
B D       Medium ground finch  ========================================================
B D                    Lizard  ========================================================
  D          Peregrine falcon  ========================================================
  D              Saker falcon  ========================================================
  D  Chinese softshell turtle  ========================================================

Inserts between block 4 and 5 in window
B D                 Squirrel 1bp
      Lesser Egyptian jerboa 7bp
B D          Chinese hamster 7bp
              Golden hamster 7bp
B D                    Mouse 6bp
B D                      Rat 6bp
B D               Guinea pig 5bp
                  Chinchilla 5bp
            Brush-tailed rat 17bp
B D                   Rabbit 6bp
B D                      Pig 8bp
B D                   Alpaca 7bp
              Bactrian camel 7bp
B D                  Dolphin 6bp
                Killer whale 6bp
            Tibetan antelope 8bp
B D                      Cow 8bp
B D                    Sheep 8bp
               Domestic goat 8bp
B D                    Horse 7bp
B D         White rhinoceros 7bp
B D                      Cat 8bp
B D                      Dog 8bp
B D                  Ferret  8bp
B D                    Panda 8bp
              Pacific walrus 8bp
                Weddell seal 8bp
            Black flying-fox 6bp
B D                  Megabat 6bp
               Big brown bat 6bp
        David's myotis (bat) 6bp
B D                 Microbat 6bp
B D                 Hedgehog 5bp
             Star-nosed mole 7bp
B D                 Elephant 2bp
B D                  Manatee 2bp
            Cape golden mole 2bp
B D                   Tenrec 4bp
B D                Armadillo 3bp

Alignment block 5 of 473 in window, 25900197 - 25900202, 6 bps 
B D                     Human  cc----c-cac
B D                     Chimp  cc----c-cac
B D                   Gorilla  cc----c-cac
B D                 Orangutan  cc----c-cac
B D                    Gibbon  cc----c-cac
B D                    Rhesus  cc----c-cac
B D       Crab-eating macaque  cc----c-cac
B D                    Baboon  cc----c-cac
B D              Green monkey  cc----c-cac
B D                  Marmoset  ca----c-cac
B D           Squirrel monkey  ca----c-cac
B D                  Bushbaby  ct----ctcac
           Chinese tree shrew  c-------cac
B D                  Squirrel  cc----c-caa
       Lesser Egyptian jerboa  gc----c-caa
                 Prairie vole  cc----c-caa
B D           Chinese hamster  tc----c-caa
               Golden hamster  tc----c-caa
B D                     Mouse  tc----c-tag
B D                       Rat  tc----c-cag
B D                Guinea pig  tcacccc-caa
                   Chinchilla  tc--------a
             Brush-tailed rat  tc--------t
B D                    Rabbit  cc----c-cag
B D                       Pig  cc----c-cag
B D                    Alpaca  cc----c-cag
               Bactrian camel  cc----c-gag
B D                   Dolphin  cc----c-cag
                 Killer whale  cc----c-cag
             Tibetan antelope  cc----c-agc
B D                       Cow  cc----c-agc
B D                     Sheep  cc----c-agc
                Domestic goat  cc----c-agc
B D                     Horse  cc----c-cag
B D          White rhinoceros  cc----c-cag
B D                       Cat  cc----c-cac
B D                       Dog  cc----c-cac
B D                   Ferret   cc----t-gac
B D                     Panda  cc----c-tgc
               Pacific walrus  cc----c-cac
                 Weddell seal  cc----c-cac
             Black flying-fox  cc----t-cgg
B D                   Megabat  cc----t-cag
                Big brown bat  cc----c-caa
         David's myotis (bat)  cc----c-caa
B D                  Microbat  cc----c-caa
B D                  Hedgehog  cc----t-cat
B D                     Shrew  cc----t-caa
              Star-nosed mole  cc----c-cag
B D                  Elephant  -c----c-tgt
          Cape elephant shrew  -c----c-tgt
B D                   Manatee  -c----c-tgt
             Cape golden mole  -c----c-tgc
                     Aardvark  -c----c-tat
B D                 Armadillo  -c----c-tca
B D                  Platypus  ---------ac
  D                    Parrot  ----agt-cac
  D             Scarlet macaw  ----agc-cac
  D            Painted turtle  ----aac-tgt
B D                      Pika  NNNNNNNNNNN
B D                Coelacanth  ===========
  D    Spiny softshell turtle  ===========
                 Spotted gar  ===========
B D               Stickleback  ===========
          Southern platyfish  ===========
      Yellowbelly pufferfish  ===========
B D                      Fugu  ===========
B D                 Tetraodon  ===========
B D                    Turkey  ===========
B D                   Chicken  ===========
  D              Mallard duck  ===========
          Tibetan ground jay  ===========
B D               Zebra finch  ===========
  D    White-throated sparrow  ===========
B D           Tasmanian devil  ===========
    Mexican tetra (cavefish)  ===========
B D                 Zebrafish  ===========
B D                    Medaka  ===========
         Pundamilia nyererei  ===========
                 Zebra mbuna  ===========
       Burton's mouthbreeder  ===========
         Princess of Burundi  ===========
B D              Nile tilapia  ===========
  D           Green seaturtle  ===========
B D        American alligator  ===========
B D                Budgerigar  ===========
B D            Naked mole-rat  ===========
  D               Rock pigeon  ===========
  D       Collared flycatcher  ===========
B D       Medium ground finch  ===========
B D                    Lizard  ===========
  D          Peregrine falcon  ===========
  D              Saker falcon  ===========
B D                    Tenrec  ===========
  D  Chinese softshell turtle  ===========

Inserts between block 5 and 6 in window
B D                 Hedgehog 1262bp
B D                 Elephant 7bp
         Cape elephant shrew 3bp
B D                  Manatee 7bp
            Cape golden mole 7bp
                    Aardvark 7bp
B D                Armadillo 7bp

Alignment block 6 of 473 in window, 25900203 - 25900248, 46 bps 
B D                     Human  c-----------------------------tgtaacgt--agagc----aagcaaacca-----------
B D                     Chimp  c-----------------------------tgtaacgt--agagc----aagcaaacca-----------
B D                   Gorilla  c-----------------------------tgtaacat--agagc----aagcaaacca-----------
B D                 Orangutan  c-----------------------------tgtaacgt--agagc----aagcaaacca-----------
B D                    Gibbon  c-----------------------------tgtaacgt--agagc----aagcaaaccg-----------
B D                    Rhesus  c-----------------------------tgtaatgt--agagc----aagcaaacca-----------
B D       Crab-eating macaque  c-----------------------------tgtaatgt--agagc----aagcaaacca-----------
B D                    Baboon  c-----------------------------tgtaatgt--agagc----aagcaaacca-----------
B D              Green monkey  c-----------------------------tgtaatgt--agagc----aagcaaacca-----------
B D                  Marmoset  c-----------------------------tgtatcga--agagc----aagcaaacca-----------
B D           Squirrel monkey  c-----------------------------tgtatcgc--agagc----aagcaaacca-----------
B D                  Bushbaby  c-----------------------------tgtaact------ac----tagcttatct-----------
           Chinese tree shrew  cggccctggctgag----------------tgtaaccta-aaagc----aaacgagccacagcatgtgcc
B D                  Squirrel  c-----------------------------ta--attc--tgagc----aaaccaacca-----------
       Lesser Egyptian jerboa  t-----------------------------tgtagtat--taagc----aaacaaacca-----------
                 Prairie vole  c-----------------------------tgtcctgt--taaac----agagaaacca-----------
B D           Chinese hamster  c-----------------------------tgtcatat--taagc----aaacaaatca-----------
               Golden hamster  c-----------------------------tgtcatat--taagc----aaacaaacca-----------
B D                     Mouse  c-----------------------------tgtcatat--taagc----aaacaaacca-----------
B D                       Rat  c-----------------------------tgtcctat--taagc----aaacaaacca-----------
B D                Guinea pig  c-----------------------------tataagag--taagc----acacaaacca-----------
                   Chinchilla  c-----------------------------tgtaatag--taagg----acacacatca-----------
             Brush-tailed rat  t-----------------------------aaagataaataaagc----atacaaacca-----------
B D                    Rabbit  c-----------------------------tgcaac----aaagc----aaaccaacca-----------
B D                       Pig  c-----------------------------tggaacat--gaagc----aaataaacca-----------
B D                    Alpaca  c-----------------------------tgtaacat--aaagc----aaataaatca-----------
               Bactrian camel  c-----------------------------tgtaacat--aaagc----aaataaatca-----------
B D                   Dolphin  c-----------------------------tgtaacat--aaagc----aaataaacca-----------
                 Killer whale  c-----------------------------tgtaacat--aaagc----aaataaacca-----------
             Tibetan antelope  c-----------------------------tgtaacat--aaagc----aaataaagca-----------
B D                       Cow  c-----------------------------tgtaacgt--aaagc----aaataaagca-----------
B D                     Sheep  c-----------------------------tgtaacat--aaagc----aaataaagca-----------
                Domestic goat  c-----------------------------tgtaacat--aaagc----aaataaagca-----------
B D                     Horse  t-----------------------------ggtaatat--aaagc----aaagaaacca-----------
B D          White rhinoceros  c-----------------------------tgtaatat--aaagc----aaataagcca-----------
B D                       Cat  t-----------------------------ggtagcat--aaagc----aaatacactg-----------
B D                       Dog  c-----------------------------tgtaacag--aaagc----cagtaaactg-----------
B D                   Ferret   c-----------------------------tgtaccag--gaagc----cagggagctg-----------
B D                     Panda  c-----------------------------tgtaacag--aaagc----cagtaaactg-----------
               Pacific walrus  c-----------------------------tgtaacag--aaagc----caggaagctg-----------
                 Weddell seal  c-----------------------------tgtaacag--aaagc----cagtaaactg-----------
             Black flying-fox  c-----------------------------tgtaacat--aaagc--------taacag-----------
B D                   Megabat  c-----------------------------tataacat--aaagc--------taacag-----------
                Big brown bat  c-----------------------------tgtaacac--aaagc--------aaactg-----------
         David's myotis (bat)  c-----------------------------tataacac--caagc--------aaactg-----------
B D                  Microbat  c-----------------------------tgtaacac--caagc--------aaactg-----------
B D                  Hedgehog  c-----------------------------tgtagcat--agagc----taataagtag-----------
B D                     Shrew  c-----------------------------tgtaacat--aaacc----taaaaaaatg-----------
              Star-nosed mole  t-----------------------------tgaaacac--aaagt----tagtgaaaag-----------
B D                  Elephant  a-----------------------------tgtaacat--aaggc----aaataaacca-----------
          Cape elephant shrew  ------------------------------tctaactt--aaagc----aaatgaatta-----------
B D                   Manatee  a-----------------------------tgtaacat--aaagc----aaataaactg-----------
             Cape golden mole  t-----------------------------tgtaagat--aaagc----caaaaaatca-----------
B D                    Tenrec  t-----------------------------tgtag-----caggt----caatcagcc------------
                     Aardvark  t-----------------------------tgtaacaa--aaagc----aaatgaatcg-----------
B D                 Armadillo  c-----------------------------tggaatat--aaaac---aaaataagtca-----------
B D                  Platypus  ----------------------------------------aaaaa----aaaaaaaccc-----------
B D                Budgerigar  -----ctgcaggatgcaggacacaagtcaccattgact--agaac----aagtcatctt-----------
  D                    Parrot  ------------------------------cactgaac--agaac----aagccatctt-----------
  D             Scarlet macaw  ------------------------------cgttgacc--agaac----aagccatcta-----------
  D            Painted turtle  -------------gtcaagtttgaagt---cactccac--aaagctgcatggcgacact-----------
B D                      Pika  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Coelacanth  ======================================================================
  D    Spiny softshell turtle  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D           Tasmanian devil  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D                 Zebrafish  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
  D           Green seaturtle  ======================================================================
B D        American alligator  ======================================================================
B D            Naked mole-rat  ======================================================================
  D               Rock pigeon  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================
B D                    Lizard  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D  Chinese softshell turtle  ======================================================================

                        Human  -ccaa----------------gta--------------------------gaatc-ttgagattct
                        Chimp  -ccaa----------------gta--------------------------gaatc-ttgagattct
                      Gorilla  -ccaa----------------gta--------------------------gaatc-ttgagattct
                    Orangutan  -ccaa----------------gta--------------------------gaatc-ttgagattct
                       Gibbon  -ccaa----------------gta--------------------------ggatc-ttgagattct
                       Rhesus  -ccaa----------------gta--------------------------ggacc-ttgagattct
          Crab-eating macaque  -ccaa----------------gta--------------------------ggacc-ttgagattct
                       Baboon  -ccaa----------------gta--------------------------ggacc--tgagattct
                 Green monkey  -ccaa----------------gta--------------------------ggacc-ttgagattct
                     Marmoset  -ccaa----------------ctg--------------------------ggatc-ttgaaattct
              Squirrel monkey  -ccaa----------------cta--------------------------gcatc-ttgagattct
                     Bushbaby  -ccaa----------------cta--------------------------ggatc-tcaagattcc
           Chinese tree shrew  tctaa----------------cta--------------------------gggtc-ttaagatccc
                     Squirrel  -tcaa----------------ata-t-------------cct-------aagatc-ttaagatccc
       Lesser Egyptian jerboa  -tcaa----------------atagt-------------cct-------aaaacc-ttaagattgc
                 Prairie vole  -tcaa----------------aca-c-------------cct-------aagacc-ttaaggtcac
              Chinese hamster  -tcaa----------------ata-t-------------cct-------agggccttctaagatat
               Golden hamster  --------------------------------------------------------tctaggatat
                        Mouse  -tcaa----------------ata-t-------------cct-------aagacc-ttaaggacgc
                          Rat  -tcaa----------------ata-t-------------cct-------aagacc-ttaaggacgc
                   Guinea pig  -acaa----------------cta-t-------------tct-------aagatc-ttaagatttc
                   Chinchilla  -acaa----------------ata-t-------------cct-------acgatc-ttaagattcc
             Brush-tailed rat  -acaa----------------ata-t-------------cct-------aagatc-ttaagatttc
                       Rabbit  -gcta----------------gtg-t-------------cct-------aggagc-ttaaggttcc
                          Pig  -tcaa----------------tta-t-------------ccc-taac-taggatc-ttaagtttt-
                       Alpaca  -tcaa----------------ata-g-------------ctc-taac-taggatc-ttaagattt-
               Bactrian camel  -tcaa----------------atg-g-------------ctc-taac-taggatc-ttaagattt-
                      Dolphin  -tcaa----------------ata-t-------------atc-taac-taggatc-ttaagattt-
                 Killer whale  -tcaa----------------ata-t-------------atc-taac-taggatc-ttaagattt-
             Tibetan antelope  -tcca----------------ata-c-------------ctc-taac-taggatc-ttaaggttt-
                          Cow  -tccg----------------ata-t-------------ctc-taac-taggatc-ttaaggttt-
                        Sheep  -tcca----------------ata-a-------------ctcttaac-taggatc-ttaaggttt-
                Domestic goat  -tcca----------------ata-c-------------ctcttaac-taggatc-ttaaggttt-
                        Horse  -tcga----------------atc-t-------------ctc-tagc-taacatc-ttaaggtttc
             White rhinoceros  -tcaa----------------ata-t-------------ct-----c-taagatc-ttaaagtttc
                          Cat  -tcaa----------------ata-c-------------ctc-taac-taggatc-tccagat---
                          Dog  -tcaa----------------ata-c-------------ctc-taac-taggatc-ttgagacctc
                      Ferret   -tcca----------------ata-c-------------ctc-taac-cagcatc-tcgagacttc
                        Panda  -tcaa----------------ata-c-------------ctc-taac-caggacc-tcgagatttc
               Pacific walrus  -tcag----------------ata-c-------------cgc-taac-caggatc-tcgagatttc
                 Weddell seal  -tcaa----------------ata-c-------------cgc-taac-caggatc-tcgcgatttt
             Black flying-fox  -tcta----------------ata-t-------------ttc-taac-taggatc-ttaagatttc
                      Megabat  -tcta----------------ata-t-------------ttc-taac-taggatc-ttaagatttc
                Big brown bat  -tc-a----------------ata-c-------------ctt-taac-caggatc-ttaagatttc
         David's myotis (bat)  -tcaa----------------ata-c-------------ctt-taac-taggatc-ttaagatttc
                     Microbat  -tcaa----------------ata-c-------------ctt-taac-taggatc-ttaagatttc
                     Hedgehog  -tcac----------------atc-t--------------------------ttt-taaagatttc
                        Shrew  -ccaa----------------ata-ttttttgtatctcatac-taaa-t--gatc-ccaagacttt
              Star-nosed mole  -tcaa----------------ata-t---------------c-taat-t--catc-ttaagatttc
                     Elephant  -tcta----------------ata-t-------------ctg-taac-taggatt-ttaagagttc
          Cape elephant shrew  -tcaa----------------ata-t-------------tta-caac-tagaatc-ttcagcttcc
                      Manatee  -tcaa----------------ata-t-------------ctg-taac-taggatt-ttaagatttt
             Cape golden mole  ----a----------------ata-t-------------ttg-tcag-taggatc-ttaagatt--
                       Tenrec  ----a----------------ata-t-------------cta-aaggctgggctc-tttagatttc
                     Aardvark  -tcaa----------------ata-t-------------ctg-taag-gaagatc-ttgagatttc
                    Armadillo  -tcaa----------------ata-t-------------ctg-taaa-tagaatc-ttcagattcc
                     Platypus  -ctaacaaaaatccggtcactgt-------------------------------------------
                   Budgerigar  ------------------------------------------------------------------
                       Parrot  ------------------------------------------------------------------
                Scarlet macaw  ------------------------------------------------------------------
               Painted turtle  ------------------------------------------------------------------
                         Pika  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Coelacanth  ==================================================================
       Spiny softshell turtle  ==================================================================
                  Spotted gar  ==================================================================
                  Stickleback  ==================================================================
           Southern platyfish  ==================================================================
       Yellowbelly pufferfish  ==================================================================
                         Fugu  ==================================================================
                    Tetraodon  ==================================================================
                       Turkey  ==================================================================
                      Chicken  ==================================================================
                 Mallard duck  ==================================================================
           Tibetan ground jay  ==================================================================
                  Zebra finch  ==================================================================
       White-throated sparrow  ==================================================================
              Tasmanian devil  ==================================================================
     Mexican tetra (cavefish)  ==================================================================
                    Zebrafish  ==================================================================
                       Medaka  ==================================================================
          Pundamilia nyererei  ==================================================================
                  Zebra mbuna  ==================================================================
        Burton's mouthbreeder  ==================================================================
          Princess of Burundi  ==================================================================
                 Nile tilapia  ==================================================================
              Green seaturtle  ==================================================================
           American alligator  ==================================================================
               Naked mole-rat  ==================================================================
                  Rock pigeon  ==================================================================
          Collared flycatcher  ==================================================================
          Medium ground finch  ==================================================================
                       Lizard  ==================================================================
             Peregrine falcon  ==================================================================
                 Saker falcon  ==================================================================
     Chinese softshell turtle  ==================================================================

Inserts between block 6 and 7 in window
B D                   Tenrec 3bp
B D                 Platypus 2bp

Alignment block 7 of 473 in window, 25900249 - 25900275, 27 bps 
B D                     Human  ctctcaac----tgttctctagaaa-ca-cgct-
B D                     Chimp  ctctcaac----tgttctctagaaa-ca-cgct-
B D                   Gorilla  ctctcaac----tattctctagaaa-ca-cgct-
B D                 Orangutan  ctctcaac----tgttctctagaaa-ca-tgct-
B D                    Gibbon  ctctcaac----tgttctctagaaa-ca-cgct-
B D                    Rhesus  ctctaaac----tgttctctagtaa-ca-cgct-
B D       Crab-eating macaque  ctctaaac----tgttctctagtaa-ca-cgct-
B D                    Baboon  ctctaaac----tgttctctagtaa-ca-cgct-
B D              Green monkey  ctctaaac----tgttctctagtaa-ca-cgct-
B D                  Marmoset  ctctaaac----tgttctttagaaa-ca-tgct-
B D           Squirrel monkey  ctctaaac----tgttctctagaaa-ca-tgct-
B D                  Bushbaby  ctctaaac----tgttctctggaaa-caccatt-
           Chinese tree shrew  ccccgacc----tgttcgctagaaa-caccact-
B D                  Squirrel  ctctaaac----tattctctagaaa-caccact-
       Lesser Egyptian jerboa  ctctaaac----tgttctcc--aaaccaccagt-
                 Prairie vole  cgcgaaac----tgtgctctagaacacagcatt-
B D           Chinese hamster  t-ctaaac----tgttctctagaaaacaccatc-
               Golden hamster  t-ctaaac----tgctctctagaaa--actatt-
B D                     Mouse  ctctaaac----tgttctctggaaatcactct--
B D                       Rat  ctctaaac----tcttctctagaaatcactctc-
B D                Guinea pig  ctccaaac----tattttctagaaa-aatcatt-
                   Chinchilla  ctctacat----tattctctagaaa-aatcatt-
             Brush-tailed rat  ctcttaac----tattctctagaaa-aatcatc-
B D                    Rabbit  ctcaagac----tgttctccagaaa-caccatt-
B D                       Pig  ctctaaac----tgttctctataaa-cac---t-
B D                    Alpaca  ctctaaac----tgttctttagaaa-cactatt-
               Bactrian camel  ctctaaac----tgttctttagaaa-cactatt-
B D                   Dolphin  ctctgaac----tattctctagaaa-caccatt-
                 Killer whale  ctctgaac----tattctctagaaa-caccatt-
             Tibetan antelope  ccctaaac----tgttctctagaaa-catcatt-
B D                       Cow  ctctaaac----tattctctagaaa-cagcatt-
B D                     Sheep  ctctaaac----tgttctctagaaa-caccatt-
                Domestic goat  ctctaaac----tgttctctcgaaa-caccatt-
B D                     Horse  ctctaaac----tgttctctagaaa-caccatt-
B D          White rhinoceros  ctctaaac----tgttctctagaaa-caccatt-
B D                       Dog  ccctaaac----ccttctctagaaa-ccccatg-
B D                   Ferret   ccctaaac----ccttc-ccagaaa-cccc--g-
B D                     Panda  ccccaagc----ccttctctagaaa-ccccatg-
               Pacific walrus  ccctaaac----ccttctctagaaa-cccc--g-
                 Weddell seal  ccctaaac----ccttctctcgaaa-ccccctg-
             Black flying-fox  ctcta---------ttctctagcaa-taccatt-
B D                   Megabat  ctcta---------ttctctagcaa-taccatg-
                Big brown bat  ctctaaac----tgttctctagaaa-catcatt-
         David's myotis (bat)  ctctaaac----tattctctagaaa-catcatt-
B D                  Microbat  ctctaaac----tgttctctagaaa-catcatt-
B D                  Hedgehog  ctctaacc----tgatctttagaaa-tatcatt-
B D                     Shrew  gtctaaac----tgttctc-----g-catcatc-
              Star-nosed mole  cattaaaa----tgttctctacaaa-cacaatt-
B D                  Elephant  atctaaac----tgttatctagaaa-taccatt-
          Cape elephant shrew  ctctaaac------ttatctagaaa-cacaatt-
B D                   Manatee  -----aac----tgttatatagaaa-taccatt-
             Cape golden mole  atc------------tctctagaaa-caccatt-
B D                    Tenrec  atctaaac----tgttatccagaaa-caccctt-
                     Aardvark  ctctaaac----tgtttttcagaaa-caccatt-
B D                 Armadillo  caataaat----tgttctctagaaa-caccatt-
B D           Tasmanian devil  ctccaaatgttacatactgtaccaa-t-------
B D                  Platypus  cccgggcc----tcgacatcagcac-aacggt--
B D                Budgerigar  ---ctagc----agccctcatcaaa-agcaggct
  D                    Parrot  ---ctggc----aaccgtcatcaaa-agcgggct
  D             Scarlet macaw  ---ttggc----aaccctcatcaaa-agcgggct
  D            Painted turtle  ---tggat----cattctctt-----agtgtttc
B D                      Pika  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Coelacanth  ==================================
  D    Spiny softshell turtle  ==================================
                 Spotted gar  ==================================
B D               Stickleback  ==================================
          Southern platyfish  ==================================
      Yellowbelly pufferfish  ==================================
B D                      Fugu  ==================================
B D                 Tetraodon  ==================================
B D                    Turkey  ==================================
B D                   Chicken  ==================================
  D              Mallard duck  ==================================
          Tibetan ground jay  ==================================
B D               Zebra finch  ==================================
  D    White-throated sparrow  ==================================
    Mexican tetra (cavefish)  ==================================
B D                 Zebrafish  ==================================
B D                    Medaka  ==================================
         Pundamilia nyererei  ==================================
                 Zebra mbuna  ==================================
       Burton's mouthbreeder  ==================================
         Princess of Burundi  ==================================
B D              Nile tilapia  ==================================
  D           Green seaturtle  ==================================
B D        American alligator  ==================================
B D            Naked mole-rat  ==================================
  D               Rock pigeon  ==================================
  D       Collared flycatcher  ==================================
B D       Medium ground finch  ==================================
B D                    Lizard  ==================================
  D          Peregrine falcon  ==================================
  D              Saker falcon  ==================================
B D                       Cat  ----------------------------------
  D  Chinese softshell turtle  ==================================

Alignment block 8 of 473 in window, 25900276 - 25900292, 17 bps 
B D                     Human  tgtgct------------ttt--aa-tctgcc-------
B D                     Chimp  tgtgct------------ttt--aa-tctgcc-------
B D                   Gorilla  tgtgct------------ttt--aa-tctgcc-------
B D                 Orangutan  tgtgct------------ttt--aa-tctgcc-------
B D                    Gibbon  tgtgct------------ttt--aa-tctgcc-------
B D                    Rhesus  tgtgcc------------ttt--aa-tctgcc-------
B D       Crab-eating macaque  tgtgcc------------ttt--aa-tctgcc-------
B D                    Baboon  tgtgcc------------ttt--aa-tctgcc-------
B D              Green monkey  tgtgcc------------ttt--aa-tctgcc-------
B D                  Marmoset  tgtgcc------------ttt--aa-tctgcc-------
B D           Squirrel monkey  tgtgcc------------ttt--aa-tctgcc-------
B D                  Bushbaby  tgtgcc------------tta--at-tctgcc-------
           Chinese tree shrew  tgtgc---------------a--ga-ttagcc-------
B D                  Squirrel  tgtacc------------ttt--aa-attgcc-------
       Lesser Egyptian jerboa  tgcatc------------ttt--at-tctgct-------
                 Prairie vole  tgtgcc------------tgt--ac-tcttcc-------
B D           Chinese hamster  cgtgcc------------tgt--ga-cctgcc-------
               Golden hamster  ggtgcc------------tgc--ga-tctgcc-------
B D                     Mouse  -gtgcc------------tgt--aa-gcagcc-------
B D                       Rat  ggtgcc------------tgt--aa-tctccc-------
B D                Guinea pig  tgtgcc------------ttt--aa-tcagtt-------
                   Chinchilla  tgtgcc------------ttt--aa-tcagct-------
             Brush-tailed rat  tgtgcc------------tttg-aa-tcagct-------
B D                    Rabbit  tgtgcc------------ttt--aa-tctgcc-------
B D                       Pig  tgcaca------------ttt--ag-cctgtc-------
B D                    Alpaca  tgcccc------------ttt--aa-tctgac-------
               Bactrian camel  tgcccc------------ttt--aa-tctgac-------
B D                   Dolphin  ----------------------------tgcc-------
                 Killer whale  ----------------------------tgcc-------
             Tibetan antelope  tgtgcc------------ttc--ag-tctgcc-------
B D                       Cow  tgcgcct-----------ttc--ag-tctgcc-------
B D                     Sheep  tgtgcc------------ttc--ag-tctgcc-------
                Domestic goat  tgtgcc------------ttc--ag-tctgcc-------
B D                     Horse  tgtgcc------------ttt--aa-tctgcc-------
B D          White rhinoceros  tgtgcc------------ttt--aa-tctgcc-------
B D                       Cat  ----gc------------ctt--aa-tctgcc-------
B D                       Dog  tatgcc------------tcc--aa-tttgcc-------
B D                   Ferret   tgtgcc------------tac--aa-tctgcc-------
B D                     Panda  tgcagc------------ttc--aa-gctgcc-------
               Pacific walrus  tgtgcc------------ttc--aa-tctgcc-------
                 Weddell seal  tgtgcc------------ttc--aa-tctgcc-------
             Black flying-fox  tgtgcc------------atg--aa-----tc-------
B D                   Megabat  tgtgcc------------atg--aa-----tc-------
                Big brown bat  tgtggc------------ttg--atgtctgcc-------
         David's myotis (bat)  tgtggc------------ttg--aagtctgcc-------
B D                  Microbat  tgtggc------------ttg--aagtctgcc-------
B D                  Hedgehog  tgtgcc------------ttt--aa-tctgtt-------
B D                     Shrew  ------------------------a-ttagtc-------
              Star-nosed mole  tgta--------------ttt--aa-tctgcc-------
B D                  Elephant  tgtgcc------------ttt--aa-tctg-c-------
          Cape elephant shrew  tgtgc--------------------------c-------
B D                   Manatee  tgtgcc------------ttt--aa-tctg-c-------
             Cape golden mole  tgtgcc------------ttc--ag-tcta-c-------
B D                    Tenrec  tgtgcc------------ttc--ac-tctg-c-------
                     Aardvark  tgtacc------------ttt--a--tctg-c-------
B D                 Armadillo  tgggcc------------ttt--aa-tctgcc-------
B D                   Opossum  tgtggt------------ttt--ca-tctgaa-------
B D           Tasmanian devil  tgtgat------------tct--ca-tctgaa-------
B D                  Platypus  ------tggctcccactgttc--gc-tccgat-------
B D                Budgerigar  ---------------------caga-tcagtcatgtggt
  D                    Parrot  ---------------------caga-tcagtcatgtggc
  D             Scarlet macaw  ---------------------caga-tcagtcatgtggt
  D            Painted turtle  ---------------------caga-aaagttgt-tttt
B D                      Pika  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Coelacanth  =======================================
  D    Spiny softshell turtle  =======================================
                 Spotted gar  =======================================
B D               Stickleback  =======================================
          Southern platyfish  =======================================
      Yellowbelly pufferfish  =======================================
B D                      Fugu  =======================================
B D                 Tetraodon  =======================================
B D                    Turkey  =======================================
B D                   Chicken  =======================================
  D              Mallard duck  =======================================
          Tibetan ground jay  =======================================
B D               Zebra finch  =======================================
  D    White-throated sparrow  =======================================
    Mexican tetra (cavefish)  =======================================
B D                 Zebrafish  =======================================
B D                    Medaka  =======================================
         Pundamilia nyererei  =======================================
                 Zebra mbuna  =======================================
       Burton's mouthbreeder  =======================================
         Princess of Burundi  =======================================
B D              Nile tilapia  =======================================
  D           Green seaturtle  =======================================
B D        American alligator  =======================================
B D            Naked mole-rat  =======================================
  D               Rock pigeon  =======================================
  D       Collared flycatcher  =======================================
B D       Medium ground finch  =======================================
B D                    Lizard  =======================================
  D          Peregrine falcon  =======================================
  D              Saker falcon  =======================================
  D  Chinese softshell turtle  =======================================

Inserts between block 8 and 9 in window
B D                 Bushbaby 1bp
          Chinese tree shrew 1bp
B D                 Squirrel 1bp
      Lesser Egyptian jerboa 1bp
                Prairie vole 1bp
B D          Chinese hamster 1bp
              Golden hamster 1bp
B D                    Mouse 1bp
B D                      Rat 1bp
B D               Guinea pig 1bp
                  Chinchilla 1bp
            Brush-tailed rat 1bp
B D                   Rabbit 1bp
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                    Horse 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 2bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 1bp
B D                 Hedgehog 1bp
B D                    Shrew 1bp
             Star-nosed mole 1bp
B D                 Elephant 1bp
         Cape elephant shrew 1bp
B D                  Manatee 1bp
            Cape golden mole 1bp
B D                   Tenrec 1bp
                    Aardvark 1bp
B D                Armadillo 1bp
B D                 Platypus 1bp
B D               Budgerigar 13bp
  D                   Parrot 13bp
  D            Scarlet macaw 13bp
  D           Painted turtle 6bp

Alignment block 9 of 473 in window, 25900293 - 25900293, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
           Chinese tree shrew  t
B D                  Squirrel  t
       Lesser Egyptian jerboa  t
                 Prairie vole  t
B D           Chinese hamster  t
               Golden hamster  t
B D                     Mouse  t
B D                       Rat  t
B D                Guinea pig  t
                   Chinchilla  t
             Brush-tailed rat  t
B D                    Rabbit  c
B D                       Pig  t
B D                    Alpaca  t
               Bactrian camel  t
B D                   Dolphin  t
                 Killer whale  t
             Tibetan antelope  t
B D                       Cow  t
B D                     Sheep  t
                Domestic goat  t
B D                     Horse  t
B D          White rhinoceros  t
B D                       Cat  t
B D                       Dog  t
B D                   Ferret   t
B D                     Panda  t
               Pacific walrus  t
                 Weddell seal  t
             Black flying-fox  t
B D                   Megabat  t
                Big brown bat  t
         David's myotis (bat)  t
B D                  Microbat  t
B D                  Hedgehog  t
B D                     Shrew  t
              Star-nosed mole  t
B D                  Elephant  t
          Cape elephant shrew  t
B D                   Manatee  t
             Cape golden mole  t
B D                    Tenrec  t
                     Aardvark  t
B D                 Armadillo  t
B D                  Platypus  c
  D          Peregrine falcon  t
B D                Budgerigar  t
  D                    Parrot  t
  D             Scarlet macaw  t
B D                      Pika  N
B D                Coelacanth  =
  D    Spiny softshell turtle  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                    Turkey  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D           Tasmanian devil  -
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
  D           Green seaturtle  =
B D        American alligator  =
B D                   Opossum  -
B D            Naked mole-rat  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Lizard  =
  D              Saker falcon  =
  D  Chinese softshell turtle  =

Alignment block 10 of 473 in window, 25900294 - 25900305, 12 bps 
B D                     Human  ttt--------------aaaagggac
B D                     Chimp  ttt--------------aaaagggac
B D                   Gorilla  ttt--------------aaaagggac
B D                 Orangutan  ttt--------------aaaagggac
B D                    Gibbon  ttt--------------aaaagggac
B D                    Rhesus  ttt--------------aaaagggac
B D       Crab-eating macaque  ttt--------------aaaagggac
B D                    Baboon  ttt--------------aaaagggac
B D              Green monkey  ttt--------------aaaagggac
B D                  Marmoset  ttt--------------aaaagggac
B D           Squirrel monkey  ttt--------------aaaagggac
B D                  Bushbaby  ttt--------------aacagggac
           Chinese tree shrew  ttt--------------aaccagggc
B D                  Squirrel  ttt--------------aacagggat
       Lesser Egyptian jerboa  ttttctttaaacagggacacagg---
                 Prairie vole  ttt--------------aagggg---
B D           Chinese hamster  ttt--------------aatgtg---
               Golden hamster  ttt--------------aacgag---
B D                     Mouse  tct--------------aagggg---
B D                       Rat  ttt--------------agcggg---
B D                Guinea pig  ttc--------------aaaagggac
                   Chinchilla  ttc--------------aaaagggac
             Brush-tailed rat  ttc--------------aaaaggaac
B D                    Rabbit  ttt--------------aacagggac
B D                       Pig  ttt--------------aatggggac
B D                    Alpaca  ttt--------------aacagggac
               Bactrian camel  ttt--------------aacagggac
B D                   Dolphin  ttt--------------aatgggggc
                 Killer whale  ttt--------------aatgggggc
             Tibetan antelope  ctt--------------actggggac
B D                       Cow  ttt--------------aatggggac
B D                     Sheep  ctt--------------aatggggac
                Domestic goat  ctt--------------aatggggac
B D                     Horse  ttt--------------aacagggac
B D          White rhinoceros  ttt--------------aaaagggac
B D                       Cat  ttt--------------aacagggac
B D                       Dog  ttt--------------aacagggac
B D                   Ferret   ttt--------------aatggggac
B D                     Panda  ttt--------------aacagggac
               Pacific walrus  ttt--------------aacagggac
                 Weddell seal  ttt--------------aacagggac
             Black flying-fox  ttt--------------aacagggac
B D                   Megabat  ttt--------------aacaggcac
                Big brown bat  ttt--------------aacagggac
         David's myotis (bat)  ttt--------------aacagggac
B D                  Microbat  ttt--------------aacagggac
B D                  Hedgehog  ttc--------------aatacggac
B D                     Shrew  ttt--------------a-caggcac
              Star-nosed mole  tta--------------agcagggac
B D                  Elephant  ttt--------------aacagggac
          Cape elephant shrew  ttt--------------aacagggat
B D                   Manatee  ttt--------------aacagggac
             Cape golden mole  ttt--------------aacagggac
B D                    Tenrec  ttt--------------aacagggtc
                     Aardvark  ttt--------------aacagggac
B D                 Armadillo  ttt--------------aacggggac
B D                   Opossum  tta--------------aatagggac
B D           Tasmanian devil  tta--------------aataggaac
B D                  Platypus  ctt--------------g--------
  D          Peregrine falcon  tgt--------------tgaagtgtc
B D                Budgerigar  tgt--------------tgaagcatc
  D                    Parrot  tgt--------------tgaagcatc
  D             Scarlet macaw  tgt--------------tgaagcatc
  D            Painted turtle  -------------------aaaagtc
B D                    Lizard  -tt--------------ggaaaggca
B D                      Pika  NNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Coelacanth  ==========================
  D    Spiny softshell turtle  ==========================
                 Spotted gar  ==========================
B D               Stickleback  ==========================
          Southern platyfish  ==========================
      Yellowbelly pufferfish  ==========================
B D                      Fugu  ==========================
B D                 Tetraodon  ==========================
B D                    Turkey  ==========================
B D                   Chicken  ==========================
  D              Mallard duck  ==========================
          Tibetan ground jay  ==========================
B D               Zebra finch  ==========================
  D    White-throated sparrow  ==========================
    Mexican tetra (cavefish)  ==========================
B D                 Zebrafish  ==========================
B D                    Medaka  ==========================
         Pundamilia nyererei  ==========================
                 Zebra mbuna  ==========================
       Burton's mouthbreeder  ==========================
         Princess of Burundi  ==========================
B D              Nile tilapia  ==========================
  D           Green seaturtle  ==========================
B D        American alligator  ==========================
B D            Naked mole-rat  ==========================
  D               Rock pigeon  ==========================
  D       Collared flycatcher  ==========================
B D       Medium ground finch  ==========================
  D              Saker falcon  ==========================
  D  Chinese softshell turtle  ==========================

Inserts between block 10 and 11 in window
B D                  Opossum 1bp
B D          Tasmanian devil 1bp

Alignment block 11 of 473 in window, 25900306 - 25900311, 6 bps 
B D                     Human  aca-g------aa-------------
B D                     Chimp  aca-g------aa-------------
B D                   Gorilla  aca-g------aa-------------
B D                 Orangutan  aca-g------ga-------------
B D                    Gibbon  aca-g------aa-------------
B D                    Rhesus  aca-g------aa-------------
B D       Crab-eating macaque  aca-g------aa-------------
B D                    Baboon  aca-g------aa-------------
B D              Green monkey  aca-g------aa-------------
B D                  Marmoset  aca-g------aa-------------
B D           Squirrel monkey  tca-g------aa-------------
B D                  Bushbaby  aca-g------aa-------------
           Chinese tree shrew  acgcg------aa-------------
B D                  Squirrel  aga-g-----aaa-------------
       Lesser Egyptian jerboa  -----------aa-------------
                 Prairie vole  -----------aa-------------
B D           Chinese hamster  -----------aa-------------
               Golden hamster  -----------aa-------------
B D                     Mouse  -----------aa-------------
B D                       Rat  -----------aa-------------
B D                Guinea pig  aga-a-----aaa-------------
                   Chinchilla  aaa-g-----aaa-------------
             Brush-tailed rat  aga-g-----aaa-------------
B D                    Rabbit  aga-g-----gaa-------------
B D                       Pig  act-a-----aaa-------------
B D                    Alpaca  aca-g-----aaa-------------
               Bactrian camel  aca-g-----aaa-------------
B D                   Dolphin  aca-g-----aaa-------------
                 Killer whale  aca-g-----aaa-------------
             Tibetan antelope  aca-ga----aaa-------------
B D                       Cow  aca-ga----aaa-------------
B D                     Sheep  aca-ga----aaa-------------
                Domestic goat  aca-ga----aaa-------------
B D                     Horse  aca-a-----gaa-------------
B D          White rhinoceros  aca-a-----gaa-------------
B D                       Cat  atg-g-----gaa-------------
B D                       Dog  ac--g-----gaa-------------
B D                   Ferret   aca-g-----gaa-------------
B D                     Panda  acg-g-----gga-------------
               Pacific walrus  acg-g-----gaa-------------
                 Weddell seal  acg-g-----gaa-------------
             Black flying-fox  aca-g-----gaa-------------
B D                   Megabat  aca-g-----gaa-------------
                Big brown bat  aca-c-----aaa-------------
         David's myotis (bat)  aca-g-----aaa-------------
B D                  Microbat  aca-g-----aaa-------------
B D                  Hedgehog  a---t-----gaa-------------
B D                     Shrew  a-g-g-----gaa-------------
              Star-nosed mole  act-g-----gaa-------------
B D                  Elephant  aca-g-----gaa-------------
          Cape elephant shrew  aga-a-----gaa-------------
B D                   Manatee  acg-g-----gaa-------------
             Cape golden mole  aag-g-----gaa-------------
B D                    Tenrec  aag-g-----gaa-------------
                     Aardvark  acg-g-----gaa-------------
B D                 Armadillo  ata-g-----gaa-------------
B D                   Opossum  -----gaa--aaa-------------
B D           Tasmanian devil  -----caa--aaa-------------
B D                   Wallaby  -----caa--aaa-------------
B D                  Platypus  -------gccgaa-------------
  D          Peregrine falcon  -----------ag--------ca---
B D                Budgerigar  -----------ag--------ca---
  D                    Parrot  -----------ag--------ca---
  D             Scarlet macaw  -----------ag--------ca---
  D            Painted turtle  -----------agattacagtca---
B D                    Lizard  -----------ag--------catat
B D                      Pika  NNNNNNNNNNNNNNNNNNNNNNNNNN
B D                Coelacanth  ==========================
  D    Spiny softshell turtle  ==========================
                 Spotted gar  ==========================
B D               Stickleback  ==========================
          Southern platyfish  ==========================
      Yellowbelly pufferfish  ==========================
B D                      Fugu  ==========================
B D                 Tetraodon  ==========================
B D                    Turkey  ==========================
B D                   Chicken  ==========================
  D              Mallard duck  ==========================
          Tibetan ground jay  ==========================
B D               Zebra finch  ==========================
  D    White-throated sparrow  ==========================
    Mexican tetra (cavefish)  ==========================
B D                 Zebrafish  ==========================
B D                    Medaka  ==========================
         Pundamilia nyererei  ==========================
                 Zebra mbuna  ==========================
       Burton's mouthbreeder  ==========================
         Princess of Burundi  ==========================
B D              Nile tilapia  ==========================
  D           Green seaturtle  ==========================
B D        American alligator  ==========================
B D            Naked mole-rat  ==========================
  D               Rock pigeon  ==========================
  D       Collared flycatcher  ==========================
B D       Medium ground finch  ==========================
  D              Saker falcon  ==========================
  D  Chinese softshell turtle  ==========================

Inserts between block 11 and 12 in window
  D         Peregrine falcon 1bp
B D               Budgerigar 1bp
  D                   Parrot 1bp
  D            Scarlet macaw 1bp
  D           Painted turtle 8bp

Alignment block 12 of 473 in window, 25900312 - 25900319, 8 bps 
B D                     Human  c-aaaaa---------a--t
B D                     Chimp  c-aaaaa---------a--t
B D                   Gorilla  c-aaaaa---------a--t
B D                 Orangutan  c-aaaaa---------a--t
B D                    Gibbon  c-aaaaa---------a--t
B D                    Rhesus  c-aaaaa---------a--t
B D       Crab-eating macaque  c-aaaaa---------a--t
B D                    Baboon  c-aaaaa---------a--t
B D              Green monkey  c-aaaaa---------a--t
B D                  Marmoset  c-agaaa---------a--t
B D           Squirrel monkey  c-agaaa---------a--t
B D                  Bushbaby  caaaaaa---------a--t
           Chinese tree shrew  c-aaaaa---------aacc
B D                  Squirrel  c-aaaaa---------a--c
       Lesser Egyptian jerboa  c-aaaac---------a--c
                 Prairie vole  c-aaaac---------a--c
B D           Chinese hamster  c-aaaac---------c--c
               Golden hamster  c-aaaac---------a--c
B D                     Mouse  c-aaaac---------c--c
B D                       Rat  c-aaaac---------a--c
B D                Guinea pig  c-aaaa----------g--c
                   Chinchilla  c-aaaaa---------a--c
             Brush-tailed rat  c-aaaac---------a--c
B D                    Rabbit  c-aaaaa---------a--a
B D                       Pig  c-aaaaa---------a--t
B D                    Alpaca  c-aaaaa---------a--t
               Bactrian camel  c-aaaaa---------a--t
B D                   Dolphin  c-aaaaa---------a--t
                 Killer whale  c-aaaaa---------a--t
             Tibetan antelope  c-aaaaa---------a--t
B D                       Cow  c-aaaaa---------a--t
B D                     Sheep  c-aaaaa---------a--t
                Domestic goat  c-aaaaa---------a--t
B D                     Horse  c-aaaaaa--------a--t
B D          White rhinoceros  c-aaaaaa--------a--t
B D                       Cat  c-aaaaat--------a--a
B D                       Dog  c-aaaaat--------a--a
B D                   Ferret   c-aaaaat--------a--a
B D                     Panda  c-aaaact--------a--a
               Pacific walrus  c-aaaaat--------a--a
                 Weddell seal  c--aaaat--------a--a
             Black flying-fox  c-aaaaaa--------a--t
B D                   Megabat  c-aaaaaa--------a--t
                Big brown bat  c-aaaaaa--------a--c
         David's myotis (bat)  c-aaaaaa--------a--c
B D                  Microbat  c-aaaaaa--------a--c
B D                  Hedgehog  c-aaaaat--------g--t
B D                     Shrew  c-aaaaca--------a--t
              Star-nosed mole  c-aaaaaaaaaaaatga--t
B D                  Elephant  c-aaaaa---------a--a
          Cape elephant shrew  c-aaaaa---------a--a
B D                   Manatee  c-aaaaa---------a--a
             Cape golden mole  c-aaaat---------a--a
B D                    Tenrec  c-aaaaa---------a--a
                     Aardvark  c-aaaaa---------a--a
B D                 Armadillo  c-aaata---------a--a
B D                   Opossum  c-agaaa---------a--t
B D           Tasmanian devil  c-agaaa---------a--t
B D                   Wallaby  --aaata---------a--t
B D                  Platypus  c-aaaaa---------g--g
  D          Peregrine falcon  c-caaag---------g--g
B D                Budgerigar  c-aaaag---------g--g
  D                    Parrot  c-caaag---------g--g
  D             Scarlet macaw  c-caaag---------g--g
B D                   Chicken  --aacaa---------a--g
B D                    Turkey  --aacaa---------a--g
B D        American alligator  --caaag---------g--g
  D            Painted turtle  ----caa---------g--g
B D                    Lizard  --aggaa---------g--g
B D                      Pika  NNNNNNNNNNNNNNNNNNNN
B D                Coelacanth  ====================
  D    Spiny softshell turtle  ====================
                 Spotted gar  ====================
B D               Stickleback  ====================
          Southern platyfish  ====================
      Yellowbelly pufferfish  ====================
B D                      Fugu  ====================
B D                 Tetraodon  ====================
  D              Mallard duck  ====================
          Tibetan ground jay  ====================
B D               Zebra finch  ====================
  D    White-throated sparrow  ====================
    Mexican tetra (cavefish)  ====================
B D                 Zebrafish  ====================
B D                    Medaka  ====================
         Pundamilia nyererei  ====================
                 Zebra mbuna  ====================
       Burton's mouthbreeder  ====================
         Princess of Burundi  ====================
B D              Nile tilapia  ====================
  D           Green seaturtle  ====================
B D            Naked mole-rat  ====================
  D               Rock pigeon  ====================
  D       Collared flycatcher  ====================
B D       Medium ground finch  ====================
  D              Saker falcon  ====================
  D  Chinese softshell turtle  ====================

Inserts between block 12 and 13 in window
B D                 Squirrel 1bp
      Lesser Egyptian jerboa 1bp
                Prairie vole 1bp
B D          Chinese hamster 1bp
              Golden hamster 1bp
B D                    Mouse 1bp
B D                      Rat 1bp
B D               Guinea pig 1bp
                  Chinchilla 1bp
            Brush-tailed rat 1bp
B D                   Rabbit 1bp
B D                 Elephant 1bp
         Cape elephant shrew 1bp
B D                  Manatee 1bp
            Cape golden mole 1bp
B D                   Tenrec 1bp
                    Aardvark 1bp
B D                Armadillo 1bp

Alignment block 13 of 473 in window, 25900320 - 25900333, 14 bps 
B D                     Human  ggttgttt-gc-aaat
B D                     Chimp  gcttgttt-gc-aaat
B D                   Gorilla  gcttgttt-gc-aaat
B D                 Orangutan  gcttgttt-gc-aaat
B D                    Gibbon  gcttgttt-gc-aaat
B D                    Rhesus  gcttgttt-gc-aaat
B D       Crab-eating macaque  gcttgttt-gc-aaat
B D                    Baboon  gcttgttt-gc-aaat
B D              Green monkey  gcttgttt-gc-aaat
B D                  Marmoset  gcttgttt-gc-aaat
B D           Squirrel monkey  gcttgttt-gc-aaat
B D                  Bushbaby  gcctgttt-gc-aaat
           Chinese tree shrew  gcttgttt-gc-aaat
B D                  Squirrel  gtttgttt-gc-aaat
       Lesser Egyptian jerboa  gcttgttt-gc-aaat
                 Prairie vole  gcttgttt-gc-acat
B D           Chinese hamster  gcttgttt-gc-acat
               Golden hamster  gcttgttc--c-acgt
B D                     Mouse  gcttgttt-gc-acgt
B D                       Rat  gcttgttt-gc-acat
B D                Guinea pig  gcttgttt-gc-aaat
                   Chinchilla  acttgttt-gc-aaat
             Brush-tailed rat  gtttgttt-gc-aaat
B D                    Rabbit  gcttgttt-gc-aaat
B D                      Pika  gattgttt-gc-aaat
B D                       Pig  gcttgtgt-gc-aaat
B D                    Alpaca  gcttgttt-gc-aaat
               Bactrian camel  gcttgttt-gc-aaat
B D                   Dolphin  gcttgttt-gc-caat
                 Killer whale  gcctgttt-gc-caat
             Tibetan antelope  gcttgttt-gc-aaat
B D                       Cow  gcttcttt-gc-aaat
B D                     Sheep  gcttgttt-gc-aaat
                Domestic goat  gcttgttt-gc-aaat
B D                     Horse  gcctgttt-gc-aaac
B D          White rhinoceros  gcctgttt-gc-aaat
B D                       Cat  gcttgttt-gt-gaat
B D                       Dog  gcttgttt-gc-aaat
B D                   Ferret   gcttgttt-gc-aaat
B D                     Panda  gcttgttt-gc-aaat
               Pacific walrus  gcttgttt-gc-aaat
                 Weddell seal  gcttgttt-gc-aaat
             Black flying-fox  gcttgttt-gc-aaat
B D                   Megabat  gcttgttt-gc-aaat
                Big brown bat  gcttgttt-gc-aaat
         David's myotis (bat)  gcttgttt-gc-aaat
B D                  Microbat  gcttgttt-gc-aaat
B D                  Hedgehog  gattgttt-gcaaaaa
B D                     Shrew  gtttgttt-gc-aaat
              Star-nosed mole  gcctgttt-gc-aaat
B D                  Elephant  gcttgttt-gc-aaat
          Cape elephant shrew  gcttgttt-gc-aaat
B D                   Manatee  gcttgttt-gc-aaat
             Cape golden mole  acttgttt-gc-aagt
B D                    Tenrec  gcttgttt-gc-aaat
                     Aardvark  gcttgttt-gc-aaac
B D                 Armadillo  ccctgttt-gc-aaac
B D                   Opossum  gattgtgt-gt-gaat
B D           Tasmanian devil  gattgtgt-gt-gaat
B D                   Wallaby  tcttgtgt-ga-gaag
B D                  Platypus  gattgttg-ag-gaat
  D          Peregrine falcon  aggtggtt-ct-gaac
B D                Budgerigar  aggtggct-ct-gaac
  D                    Parrot  aggtggtt-ct-gaac
  D             Scarlet macaw  aggtggtt-ct-gaac
B D                   Chicken  acgtgtttgtt-gaag
B D                    Turkey  atgtgtttgtt-gaag
B D        American alligator  aggtggtt-ct-gaac
  D            Painted turtle  atttatttgtt-gaag
B D                    Lizard  aggtggct-ct-----
B D                Coelacanth  ================
  D    Spiny softshell turtle  ================
                 Spotted gar  ================
B D               Stickleback  ================
          Southern platyfish  ================
      Yellowbelly pufferfish  ================
B D                      Fugu  ================
B D                 Tetraodon  ================
  D              Mallard duck  ================
          Tibetan ground jay  ================
B D               Zebra finch  ================
  D    White-throated sparrow  ================
    Mexican tetra (cavefish)  ================
B D                 Zebrafish  ================
B D                    Medaka  ================
         Pundamilia nyererei  ================
                 Zebra mbuna  ================
       Burton's mouthbreeder  ================
         Princess of Burundi  ================
B D              Nile tilapia  ================
  D           Green seaturtle  ================
B D            Naked mole-rat  ================
  D               Rock pigeon  ================
  D       Collared flycatcher  ================
B D       Medium ground finch  ================
  D              Saker falcon  ================
  D  Chinese softshell turtle  ================

Inserts between block 13 and 14 in window
  D         Peregrine falcon 1bp
B D               Budgerigar 1bp
  D                   Parrot 1bp
  D            Scarlet macaw 1bp
B D                  Chicken 28bp
B D                   Turkey 28bp
B D       American alligator 6bp
  D           Painted turtle 3bp
B D                   Lizard 1bp

Alignment block 14 of 473 in window, 25900334 - 25900342, 9 bps 
B D                     Human  aaacatctg
B D                     Chimp  aaacatctg
B D                   Gorilla  aaacatctg
B D                 Orangutan  aaacatctg
B D                    Gibbon  aaacatctg
B D                    Rhesus  aaacatctg
B D       Crab-eating macaque  aaacatctg
B D                    Baboon  aaacatctg
B D              Green monkey  aaacatctg
B D                  Marmoset  aaacatctg
B D           Squirrel monkey  aaacatctg
B D                  Bushbaby  aaacatctg
           Chinese tree shrew  aaacatcag
B D                  Squirrel  aaacatctg
       Lesser Egyptian jerboa  aaacatctg
                 Prairie vole  aaacatctg
B D           Chinese hamster  aaacatttg
               Golden hamster  aaacatctg
B D                     Mouse  aaacatctg
B D                       Rat  aaacatctg
B D                Guinea pig  aaacatctg
                   Chinchilla  aaacatctg
             Brush-tailed rat  aaacatttg
B D                    Rabbit  aaacatctg
B D                      Pika  aaacatctg
B D                       Pig  aaacatctc
B D                    Alpaca  aaacatctg
               Bactrian camel  acacatctg
B D                   Dolphin  aaacatctg
                 Killer whale  aaacatctg
             Tibetan antelope  aaacatctg
B D                       Cow  aaacatctg
B D                     Sheep  aaacatctg
                Domestic goat  aaacatctg
B D                     Horse  aaacatctg
B D          White rhinoceros  aaacatctg
B D                       Cat  aaacatctg
B D                       Dog  aaacatctg
B D                   Ferret   aaacatctg
B D                     Panda  aaacatctg
               Pacific walrus  aaacatctg
                 Weddell seal  aaacatctg
             Black flying-fox  aaacatctg
B D                   Megabat  aaacatctg
                Big brown bat  aaacatcag
         David's myotis (bat)  aaacatcag
B D                  Microbat  aaacatcag
B D                  Hedgehog  aaacatctg
B D                     Shrew  aaatatcta
              Star-nosed mole  aaacatctg
B D                  Elephant  aaacatctg
          Cape elephant shrew  aaacatctg
B D                   Manatee  aaacatctg
             Cape golden mole  aaacatctg
B D                    Tenrec  aaacatttg
                     Aardvark  aaacatctg
B D                 Armadillo  aaacatctg
B D                   Opossum  aaccatcca
B D           Tasmanian devil  aaacatccg
B D                   Wallaby  aaacatctg
B D                  Platypus  aaacacggg
  D          Peregrine falcon  ---cttttt
B D                Budgerigar  ---cctttg
  D                    Parrot  ---cttttg
  D             Scarlet macaw  ---cttttg
  D              Mallard duck  aaccctttg
B D                   Chicken  aaccatttc
B D                    Turkey  aaccatttc
B D        American alligator  aaaca----
  D            Painted turtle  caacatcca
B D                    Lizard  aaccgttt-
B D                Coelacanth  =========
  D    Spiny softshell turtle  =========
                 Spotted gar  =========
B D               Stickleback  =========
          Southern platyfish  =========
      Yellowbelly pufferfish  =========
B D                      Fugu  =========
B D                 Tetraodon  =========
          Tibetan ground jay  =========
B D               Zebra finch  =========
  D    White-throated sparrow  =========
    Mexican tetra (cavefish)  =========
B D                 Zebrafish  =========
B D                    Medaka  =========
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
         Princess of Burundi  =========
B D              Nile tilapia  =========
  D           Green seaturtle  =========
B D            Naked mole-rat  =========
  D               Rock pigeon  =========
  D       Collared flycatcher  =========
B D       Medium ground finch  =========
  D              Saker falcon  =========
  D  Chinese softshell turtle  =========

Inserts between block 14 and 15 in window
  D         Peregrine falcon 8bp
B D               Budgerigar 4bp
  D                   Parrot 4bp
  D            Scarlet macaw 4bp
  D           Painted turtle 28bp

Alignment block 15 of 473 in window, 25900343 - 25900343, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                  Bushbaby  a
           Chinese tree shrew  a
B D                  Squirrel  a
       Lesser Egyptian jerboa  a
                 Prairie vole  a
B D           Chinese hamster  a
               Golden hamster  a
B D                     Mouse  a
B D                       Rat  a
B D                Guinea pig  a
                   Chinchilla  a
             Brush-tailed rat  a
B D                    Rabbit  a
B D                      Pika  a
B D                       Pig  a
B D                    Alpaca  a
               Bactrian camel  a
B D                   Dolphin  a
                 Killer whale  a
             Tibetan antelope  a
B D                       Cow  a
B D                     Sheep  a
                Domestic goat  a
B D                     Horse  a
B D          White rhinoceros  a
B D                       Cat  a
B D                       Dog  a
B D                   Ferret   a
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  a
B D                   Megabat  a
                Big brown bat  a
         David's myotis (bat)  a
B D                  Microbat  a
B D                     Shrew  a
              Star-nosed mole  a
B D                  Elephant  a
          Cape elephant shrew  a
B D                   Manatee  a
             Cape golden mole  a
                     Aardvark  a
B D                 Armadillo  a
B D                   Opossum  a
B D           Tasmanian devil  a
B D                   Wallaby  t
B D                  Platypus  a
  D              Saker falcon  a
  D          Peregrine falcon  a
B D                Budgerigar  a
  D                    Parrot  c
  D             Scarlet macaw  a
  D              Mallard duck  a
B D                   Chicken  a
B D                    Turkey  a
B D        American alligator  g
  D           Green seaturtle  a
  D            Painted turtle  a
  D  Chinese softshell turtle  a
  D    Spiny softshell turtle  a
B D                    Lizard  g
B D                  Hedgehog  -
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
  D       Collared flycatcher  =
B D       Medium ground finch  =
B D                    Tenrec  -

Inserts between block 15 and 16 in window
  D             Mallard duck 4bp
B D                  Chicken 4bp
B D                   Turkey 4bp
B D       American alligator 1bp

Alignment block 16 of 473 in window, 25900344 - 25900483, 140 bps 
B D                     Human  aagaa---agtaa-cagctgacctgggctgaggc----------atcc-aaacaaagcagtca-ttgt-g
B D                     Chimp  aagaa---agtaa-cagctgacctgggctgaggc----------atcc-aaacaaagcagtca-ttgt-g
B D                   Gorilla  aagaa---agtaa-cagctgacctgggctgaggc----------atcc-aaacaaagctgtca-ttgt-g
B D                 Orangutan  aagaatatagtaa-cagctgacctgggctgaggc----------atcc-aaacaaagcggtca-ttgt-g
B D                    Gibbon  aagaatatagtaa-cagctgacctgggctgaggc----------atcc-aaacaaagtggtca-ttgt-g
B D                    Rhesus  aagaatatagtaa-cagctgacctgggctgaggc----------atcc-aaacaaagcggcca-ttgt-g
B D       Crab-eating macaque  aagaatatagtaa-cagctgacctgggctgaggc----------atcc-aaacaaagcagcca-ttgt-g
B D                    Baboon  aagaatatagtaa-cagctgacctgggctgaggc----------atcc-aaacaaagcagcca-ttgt-g
B D              Green monkey  aagaatatagtaa-cagctgacctgggctgaggc----------atcc-aaacaaagcggcca-ttgt-g
B D                  Marmoset  aagaatatagtaa-cagctgacctgggctgaggc----------atcc-aaacaaagcggtca-ttgt-g
B D           Squirrel monkey  aagaatatagtaa-cagctgacctgggctgaggc----------atcc-aaacaaagcggtca-ttgt-g
B D                  Bushbaby  aagaatatagtaa-cagctgatctgggctgaggc----------atca-aaacaaagcagtga-ttgt-g
           Chinese tree shrew  aagaatatagtaa-cagctgatcggggcccaggc----------agca-ggacaaagtgggga-ttgt-g
B D                  Squirrel  aagaatatagtca-cagctgatctgggctgaggc----------agca-acacaaagtgatga-ttgt-g
       Lesser Egyptian jerboa  aaggatatagtaa-cagctgacctgggctgaggc----------agtg-acacaaagtgacga-ttgt-g
                 Prairie vole  aagaa---aataa-cagctgatccggg-tgaggc-----------acc-acacaaagccgtga-ttgt-g
B D           Chinese hamster  aagag---aacaa-cagctgatcaggg-tgaggccaccacacaacaca-acacaaagccgtga-ttgt-g
               Golden hamster  aagaa------ag-cagctgatctggg-tgagac----------gaca-acacaaagccatga-ttgt-g
B D                     Mouse  aagaa---aataa-cagctgagctggg-gaagac----------agca-gaacaaagccgagc-ttgt-g
B D                       Rat  aagaa---aataa-cagctgatctggg-taagac----------agca-acacaaagccatga-ttgt-a
B D                Guinea pig  aagaatatagtaa-cagctgatcggggctaaggc----------atca-acacaaagtgttga-ttgt-g
                   Chinchilla  aagaatatagtaa-cagctgatctgggccaacgc----------atca-acacaaagtgttga-ttgt-g
             Brush-tailed rat  aagaatatagtaa-cagctgatctgggccaacgc----------atca-gcacaaagtgttga-ttgt-g
B D                    Rabbit  aagaatatagtaa-cagctgatctgggccgaggc----------accc-acacaaagtgatga-ttgt-g
B D                      Pika  aagaatatagtaa-cagctgatgtgggccgaggc----------agcc-a-acaaagggatga-ttgt--
B D                       Pig  aagactatcctaa-cagctgatctgggccgaggc----------atca-caacaaagtgacga-ttgt-g
B D                    Alpaca  aaaactatcgtaa-cagctgatctgggcccaggc----------atca-caacaaagtgacga-ttgt-g
               Bactrian camel  aaaactatcataa-cagctgatctgggcccaggc----------atca-caacaaagtgacga-ttgt-g
B D                   Dolphin  aacactatcgtaa-cagctgatcggagccgaggc----------atca-caacaaagtgacga-ttgt-g
                 Killer whale  aacactatcgtaa-cagctgatcagagccgaggc----------atca-caacaaagtgacga-ttgt-g
             Tibetan antelope  aagactatcataa-cagctgatctgggccgaggc----------acca-caacaaagtgacga-ttgt-g
B D                       Cow  aagactatcataa-cagctgatctgggctgaggc----------atca-caacaaagtgagga-ttgt-g
B D                     Sheep  aagactatcataa-cagctgatctgggctgaggc----------atca-caacaaagtgacga-ttgt-g
                Domestic goat  aagactatcataa-cagctgatctgggccgaggc----------atca-caacaaagtgacga-ttgt-g
B D                     Horse  aagactctcgtaa-cagctgatctgggccagggc----------atcc-caacaaagtgacga-ttgt-g
B D          White rhinoceros  aagactcttgtaa-cagctgatctgggccggggc----------accc-caacaaagtgacaa-ttgt-g
B D                       Cat  aagaccatcggggacagctgatctgggc-ggggc----------atca-aaacacagtgagga-ttgt-g
B D                       Dog  aagactatcgtag-cagctgatctgggctgaggc----------atcc-aaacaaagtgacga-ttgt-g
B D                   Ferret   aagactatcgtag-cagctgatctgggccgaggc----------atca-aaacaaagtgacaa-ttgt-g
B D                     Panda  aagactattgcag-cagctgatctgggccgaggc----------ttcagaaacaaagtgatga-ttgt-g
               Pacific walrus  aagactatcgtag-cagctgatctgggccaaggc----------atca-aaacaaagtgatga-ttgt-g
                 Weddell seal  aagactatcgtag-cagctgatctgggccaaggc----------atca-aaacaaagtgatga-ttgt-g
             Black flying-fox  aagactatcctaa-cagctgatctgggctgaaac----------atga-caacaaagtgatga-ttgt-g
B D                   Megabat  aagactatcctaa-cagctgatctgggctgaaac----------atga-caacaaagtgatga-ttgt-g
                Big brown bat  aagactat-gtga-cagctgatctgggccacagc----------ac-a-caacaaagtgacga-ttgt-g
         David's myotis (bat)  aagactat-gtaa-cagctgatctgggccacagc----------atga-caacaaagtgacga-ttgt-g
B D                  Microbat  aagactat-gtaa-cagctgatctgggccacagc----------atga-caacaaagtgacga-ttgt-g
B D                  Hedgehog  -agattatcataa-cagctgatctgggccaatac----------atca-caacaaagtgatga-ttgt-a
B D                     Shrew  aagactatcacaa-cagctgatctgggccaaggc----------atta-taacaaagtgatga-ttgt-g
              Star-nosed mole  aagactatcataa-cagctgatctgggcccaggc----------tgca-caacaaagtgacga-ttgt-g
B D                  Elephant  aagaatatactaa-cagctgatctgggccaaggc----------atca-aaacaaagtgatgatttgt-g
          Cape elephant shrew  aagaatatagtaa-cagctgatctgggctgaggc----------atcc-aaacaaagtgatga-ttgt-g
B D                   Manatee  aagaatatactaa-cagctgatctaggccaaggc----------atca-aaacaaagcgatga-ttgt-g
             Cape golden mole  aagaatatagtaa-cagctgatctgggctgaggc----------atca-aaacaatgtgatga-ttgt-g
B D                    Tenrec  aagaatatagtaa-cagctgatctgggccagggc----------atca-aaacaaagtgttga-ttgt-g
                     Aardvark  aagaatatagtaa-cagctgatctgggccaaggc----------atca-aaacaaagtgatga-ttgt-g
B D                 Armadillo  aagaatatagtaa-cagctgatctgggctgaggc----------atca-aaacaaagtgatga-ttgt-g
B D                   Opossum  aagacta--gtaa-cagctgatctgtgctggggc----------gtca-aaacaaagctatta-ttgt-a
B D           Tasmanian devil  aagacta--ccaa-cagctgatctgggctgaggc----------gtca-aaacaaagctatta-ttgt-a
B D                   Wallaby  aagacta--gtaa-cagataatctgagctgaggt----------atca-aaacaaagttatta-ttgt-a
B D                  Platypus  aggaatagagtga-cagtggagccgggccaaggg----------gccc-caacagaactggga-ttgt-a
  D               Rock pigeon  ---aaaaacacac-cagctgacaactgctgaggt----------gtca-acacaaagctccga-ttgt-a
  D              Saker falcon  ---aaacacgcaa-cagctgacaactgctgaggt----------gtca-aaacaaagctctga-ttgt-a
  D          Peregrine falcon  ---aaacacgcaa-cagctgacaactgctgaggt----------gtca-aaacaaagctctga-ttgt-a
B D                Budgerigar  -------acacaa-cagctgacgcctgctgaggt----------gtcc-aaacaaagctctga-ttgt-a
  D                    Parrot  ---aaacacacaa-cagctgacgcctgctgaggt----------gtcc-agacaaagctctga-ttgt-a
  D             Scarlet macaw  ---aaacacacaa-cagctgacgactgctgaggt----------gtcc-agacaaagctccga-ttgt-a
  D              Mallard duck  ---aaacacccca-cagctgacaagggctgaggt----------gtcc-aaacaaagctccca-ctgt-a
B D                   Chicken  ---aaacacacaa-cagctgacaactgctgagat----------gtca-aaacaaagctctta-ttgt-a
B D                    Turkey  ---aaacacacaa-cagctgacaactgctgaggt----------gtcc-aaacaaagctctta-ttgt-a
B D        American alligator  ---aaaca-gtag-cagctgacaagtgctgaggt----------gtca-acacaaagctctta-ttgt-a
  D           Green seaturtle  ---agaaccgtaa-cagctgacaactgctgaggt----------gcca-caacaaagctctta-ttgt-a
  D            Painted turtle  ---agaaccataa-cagctgacaactgctgaggt----------gcca-caacaaagctctta-ttgt-a
  D  Chinese softshell turtle  ---agaacagtaa-cagctgacaactgctgagct----------gcca-caacaaggctctta-ttgtaa
  D    Spiny softshell turtle  ---agaacaataa-cagctgacaactgctgagct----------gtca-caacaaggctctta-ttgt-a
B D                    Lizard  ---aacaaaacag-cagctgacaactgctgaggt----------g-ca-agacaaagctctta-ttgt-a
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D                 Zebrafish  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D            Naked mole-rat  ======================================================================
  D       Collared flycatcher  ======================================================================
B D       Medium ground finch  ======================================================================

                        Human  gaa-g-gagacaatgcaaaccacact-ggg-gc-aag------aa-ac------gg-----g--------
                        Chimp  gaa-g-gagacaatgcaaaccacact-ggg-gc-aag------aa-act-g---ag-----g--------
                      Gorilla  gaa-g-gagacaatgcaaaccacact-ggg-gc-aag------aa-act-a---gg-----g--------
                    Orangutan  gaa-g-gagacaatgcaaaccacact-ggg-gc-aag------aa-act-g---ag-----g--------
                       Gibbon  gaa-g-gagacaatgcaaaccacact-ggg-gc-aag------aa-act-g---ag-----g--------
                       Rhesus  gag-g-gagacaatgcaaaccacact-ggg-gc-aa-------aa-act-g---ag-----g--------
          Crab-eating macaque  gag-g-gagacaatgcaaaccacact-ggg-gc-aag------aa-act-g---ag-----g--------
                       Baboon  gag-g-tagacaatgcaaaccacact-ggg-gc-aag------aa-act-g---ag-----g--------
                 Green monkey  gag-g-tagacaatgcaaaccacact-ggg-gc-aag------aa-act-g---ag-----g--------
                     Marmoset  gaa-g-gagacaatgcaaaccacact-ggg-gc-aag------aa-act-g---ag-----g--------
              Squirrel monkey  gaa-g-cagacaatgcaaaccacact-ggg-cc-aag------aa-act-g---ag-----g--------
                     Bushbaby  gaa-g-aagacaatgcaaact---cg-gga-gc-aag------aa-actag---ag-----g--------
           Chinese tree shrew  g-g-g-aagacaatgagaacagcgct-ggg-gc-agg------aa-gcc-g---ag-----g--------
                     Squirrel  gaa-g-aagacaatgcaaactgcctc-cga-agcaag------aa-acc-c---ag-----g--------
       Lesser Egyptian jerboa  ca--g-aagacaatgcag----------------agg------gc-gct-g---gc-----a--------
                 Prairie vole  ga----aggacaattc-------------------ag------ag-acg-g---gg-----a--------
              Chinese hamster  ga----agg-----------------------------------g-att-g---gt--------------
               Golden hamster  ca----agg-----------------------------------g-att-g---gg-----a--------
                        Mouse  tg----aggacaatca------------------gag------gg-cct-g---gg-----a--------
                          Rat  tg----aggacaattc------------------gag------ag-act-g---gg-----a--------
                   Guinea pig  gaa-g-aagacaatgcaacctcctct-gga-gc--ag------aa-act-c---ag-----g--------
                   Chinchilla  gaa-g-aagacaatgcaaacgactct-gca-gc-aag------aa-acc-c---ag-----g--------
             Brush-tailed rat  gaa-g-aagacaatgcaaacgactcc-gga-ac-aag------aa-acc-c---ag-----a--------
                       Rabbit  gga-g-cagacaatgccagcgactct-gga-gcagga------aa-ctc-g---ag-----g--------
                         Pika  ggc-g-cagacaatgcaagggcctca-gca-gccaag------ga-gcc-c---ag-----g--------
                          Pig  gca-g-aagacaatgcaaacaactct-gga-gc-gag------aa-act-c-c-ag-----ggcagagaa
                       Alpaca  gaa-g-aagacaatgcaaacaactct-gga-gc-aag------aa-act-c-c-ag-----g--------
               Bactrian camel  gaa-g-aagacaatgcaaacaactct-gga-gc-aag------aa-act-c-c-ag-----g--------
                      Dolphin  gaa-g-aagacaatgcatacgactct-gga-gc-gag------aa-act-c-c-ag-----g--------
                 Killer whale  gaa-g-aagacaatgcatacgactct-gga-gc-gag------aa-act-c-c-ag-----g--------
             Tibetan antelope  gaa-g-aagacaatgcaaacaactcc-gga-gc--ag------aa-act-c-c-ag-----g--------
                          Cow  gaa-g-aggacaatgcaaacaactcc-gga-gc-aag------aa-act-c-c-ag-----g--------
                        Sheep  gaa-g-aagacaatgcaaacaactct-gga-gc--ag------aa-act-c-c-ag-----g--------
                Domestic goat  gaa-g-aagacaatgcaaacgactcc-gga-gc--ag------aa-act-c-c-ag-----g--------
                        Horse  gat-g-aagacaatacaaacaactct-gca-g--gag------aa-act-c-g-ag-----g--------
             White rhinoceros  gat-g-aagacaatgcaaacaactct-gca-g--gag------aa-act-c-g-aa-----g--------
                          Cat  gaa-g-aagacaaagc--aggacc----------------------act-c-t-gg-----g--------
                          Dog  gac-g-aagacaatgcaaaggactct-gca-gg-gag------ag-act-c-c-ag-----g--------
                      Ferret   gga-g-aagacaatgcaaaggacttg-gga-gc-aag------aa-act-c-c-ag-----g--------
                        Panda  gaa-g-aagacaatgcaaaggactcc-gga-gc-gag------at-gcc-c-c-ag-----g--------
               Pacific walrus  gaa-g-aagacaatgcaaaggactct-gga-gc-gag------aa-act-c-c-ag-----g--------
                 Weddell seal  gaa-g-aagacaatgcaaaggactct-gga-gc-gag------aa-act-c-c-ag-----g--------
             Black flying-fox  gaa-a-aagacaatgcaaacaactct-gga-gt-gag------ag-act-c-cgag-----g--------
                      Megabat  gaa-a-aagacaatgcaaacaactct-gga-gt-gag------ag-act-c-cgag-----g--------
                Big brown bat  gaa-g-aagacaatgcaaacaactct-ggt-gc-aaa------ag-tct-c---ag-----g--------
         David's myotis (bat)  gaa-g-aagacaatgcaaacaactct-ggt-gc-aaa------ag-tct-c---ag-----g--------
                     Microbat  gaa-g-aagacaatgcaaacaactct-ggt-gc-aga------ag-tct-c---ag-----g--------
                     Hedgehog  gaa-a-aagacaaagcaaacaattct-gga-gg-gag------aa-att-t-agag-----g--------
                        Shrew  gga-g-aagacaatgcaaacaaatct-gga-ac-cag------aa-act-c-ctag-----g--------
              Star-nosed mole  gaa-g-aagacaatgcgatcgacttt-aga-gc-tgg------ca-act-c-aaag-----g--------
                     Elephant  gaa-g-aagacaatgtgaacaactct-gca-gc-aag------aa-act-ctg-ag-----g--------
          Cape elephant shrew  gaa-g-tagacaatgcaaacaacact-ggc-gc-aag------aa-act-c-g-ag-----g--------
                      Manatee  gaa-g-aagacaatgcaaacaactct-gga-gc-aag------aa-act-ctg-ag-----g--------
             Cape golden mole  gaa-t-gagacaatgcagacaactct-gga-gc-aag------aa-aac-tcc-ag-----g--------
                       Tenrec  gaa-a-tggacaatgcacacatctctggga-gc-aag------aa-ctc-ccg-ag-----g--------
                     Aardvark  gaa-g-aagacaatgcaaacaactct-ggaggc-aag------aa-act-c-g-ag-----g--------
                    Armadillo  gaa-g-aacacaatgcgaatgactct-gga-cc-aag------aa-act-c-a-ag-----a--------
                      Opossum  gaa-g-a--------tggacaactcc-aga-at-gagatctgaagaaaa-a---ga-----g--------
              Tasmanian devil  gaa-g-a--------cggacaactcc-aga-ac-aaaatctgaaa-aaa-g---gg-----g--------
                      Wallaby  aaa-a-a--------cagaaaactct-aga-aa-aaagtgtgaag-aaa-g---gg-----a--------
                     Platypus  ggc-gccacacaatgagggcagc----aga-tc-cac------ag-ggt-g---ag-----g--------
                  Rock pigeon  aaatt-aagacaatgagcac-actct-agg-g--aaa------aa-gcg-g-c-ca-----g--------
                 Saker falcon  aaatt-aagacaatgagtgt-gctct-agg-g--gag------ag-gca-g-t-ca-----t--------
             Peregrine falcon  aaatt-aagacaatgagtgt-gctct-agg-g--gag------ag-gca-g-t-ca-----t--------
                   Budgerigar  ggatg-aagacaatgggagt-gctct-a---g--gaa------ag-gca---------------------
                       Parrot  gaatg-aagacaatgggagt-gctct-a---g--gaa------ag-gca---------------------
                Scarlet macaw  gaatg-aagacaataggagt-gctct-a---g--gaa------ag-gca---------------------
                 Mallard duck  caagc-gagacaatgagcgt-gctct--gg-g--aag------ag-aca-g-t-ta-----c--------
                      Chicken  aaatg-gagacaatgaaagc-gctct-agg-g--aag------ag-cca-g-t-ta-----t--------
                       Turkey  aaact-aagacaatgaaagc-gctct-agg-g--aag------ag-cca-g-t-ta-----t--------
           American alligator  gaatt-aagacaatgaaaacagggct-agg-g--aaa------ag-gct-g-c-ca-----t--------
              Green seaturtle  agatt-aaaacaatgaagactgctct-agg-ga-aaa------ag-gat-g-c-ta-----t--------
               Painted turtle  agatt-aagacaatgaagacagctct-agg-g--aaa------ag-gat-g-c-catacact--------
     Chinese softshell turtle  agatt-aaaacaatgaagacagctct-agg-g--aaa------ag-gct-g-c-ca-----t--------
       Spiny softshell turtle  agatt-aaaacaatgaagacagctct-agg-g--aaa------ag-gct-g-c-ca-----t--------
                       Lizard  gagtg-gggacaacaggcaa--------------caa------tg-gcc-a-c-tg-----a--------
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
           Southern platyfish  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                    Tetraodon  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                    Zebrafish  ======================================================================
                       Medaka  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
               Naked mole-rat  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================

                        Human  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
                        Chimp  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
                      Gorilla  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
                    Orangutan  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
                       Gibbon  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
                       Rhesus  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
          Crab-eating macaque  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
                       Baboon  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
                 Green monkey  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
                     Marmoset  -g-----ca---------------gagaacgtg-----c----agtcat-ttgt----------------
              Squirrel monkey  -g-----ca---------------gagaacgtg-----c----ggtcat-ttgt----------------
                     Bushbaby  -g-----ca---------------gagagctcg-----c----agtaat-gtgt----------------
           Chinese tree shrew  -g-----ca---------------gagcgctcg-----c----agccct-gggt----------------
                     Squirrel  -g-----ca---------------gag--cttg-----c----agtgat-gtac----------------
       Lesser Egyptian jerboa  -gagactca---------------gagaattcg-----a----actcat-gagc----------------
                 Prairie vole  -g-----ca---------------gagaagtc--------------------------------------
              Chinese hamster  -g-----cc---------------aagaactg--------------------------------------
               Golden hamster  -g-----cg---------------gagaactg--------------------------------------
                        Mouse  -g-----ct---------------gaggactg--------------------------------------
                          Rat  -g-----ca---------------aaggacta--------------------------------------
                   Guinea pig  -g-----ca---------------gagaatttg-----c----agtaat-atac----------------
                   Chinchilla  -g-----ca---------------gagaatttg-----c----agaaat-gtac----------------
             Brush-tailed rat  -a-----ca---------------gagaatttg-----c----agtaat-gtac----------------
                       Rabbit  -g-----ca---------------gggaactcg-----c----agggat-gtgc----------------
                         Pika  -g-----caggaagggagcctgtggggagcctg-----c----agggtt-ggg-----------------
                          Pig  cg-----ca---------------gagaactcg-----c----agtgat-gtgt----------------
                       Alpaca  -g-----ca---------------gagaactca-----c----agtgat-gtgt----------------
               Bactrian camel  -g-----ca---------------gagaactca-----cagtgagtgat-gtgt----------------
                      Dolphin  -g-----ca---------------gggacctcg-----c----agtgat-gtgt----------------
                 Killer whale  -g-----ca---------------gagacctcg-----c----agtgat-gtgt----------------
             Tibetan antelope  -g-----ca---------------gagaactcg-----c----agcgat-gtgt----------------
                          Cow  -g-----ca---------------gagaactc------c----ggtggt-gtgc----------------
                        Sheep  -g-----ca---------------gagaactcg-----c----agcgat-gtgt----------------
                Domestic goat  -g-----ca---------------gagaactcg-----c----agtgat-gtgt----------------
                        Horse  -g-----ca---------------gagaacttg-----c----agtgat-gcgc----------------
             White rhinoceros  -a-----ca---------------gagaacttg-----c----agcgat-gtgt----------------
                          Cat  -g-----ca---------------gagaacttt-----c----ggtgat-gtgc----------------
                          Dog  -g-----ca---------------gagaacttg-----c----agcgac-gtgt----------------
                      Ferret   -g-----ca---------------gagaacttg-----c----agcgac-gcgt----------------
                        Panda  -g-----ca---------------gagaccttg-----t----ggcaac-gtgt----------------
               Pacific walrus  -g-----ca---------------gagaacttg-----c----ggcgac-atgt----------------
                 Weddell seal  -g-----ca---------------gagaacttg-----c----ggcgac-atgt----------------
             Black flying-fox  -g-----ca---------------gagaacttg-----c----ag-------------------------
                      Megabat  -g-----ca---------------gagaacttg-----c----ag-------------------------
                Big brown bat  -g-----ca---------------gagaatttg-----c----ag-------------------------
         David's myotis (bat)  -g-----ca---------------gagaacttg-----c----ag-------------------------
                     Microbat  -g-----ca---------------gagaacttg-----c----ag-------------------------
                     Hedgehog  -a-----tc---------------gggaacttg-----c----tgtaat-gtgt----------------
                        Shrew  -g-----ca---------------gagaagttg-----c----agtgtt-gagt----------------
              Star-nosed mole  -g-----tg---------------gagaacttg-----c----agtgac-gtgt----------------
                     Elephant  -g-----ca---------------gagaattcg-----c----agtaataatgtg---------------
          Cape elephant shrew  -g-----ca---------------gggaatttg-----c----aatgat-atgc----------------
                      Manatee  -g-----ca---------------gagaatttg-----c----agtaat-gtgg----------------
             Cape golden mole  -g-----ca---------------gagaatttg-----t----agtcat-gtgt----------------
                       Tenrec  -g-----ca---------------gagaatgtg-----c----agccat-gcgc----------------
                     Aardvark  -g-----ct---------------gagaatttg-----c----agcaat-gtgt----------------
                    Armadillo  -g-----ca---------------gagaatgtg------------tgat-gtgg----------------
                      Opossum  -g-----ca---------------cagagtgtg-----c----tgtagt---ac----------------
              Tasmanian devil  -g-----ca---------------cagagcgtg-----c----tgtagc---ac----------------
                      Wallaby  -g-----ca---------------cagaacttg-----t----tgctat---ac----------------
                     Platypus  -g-----tg---------------gg---tggg-----t----agacag-gctc----------------
                  Rock pigeon  -g-----ct---------------gc--------------------------------------------
                 Saker falcon  -g-----ca---------------gcatgcccc-----t----ggacgt-gcagaaa-------------
             Peregrine falcon  -g-----ca---------------gcatgcccc-----t----ggacgt-gcagaaa-------------
                   Budgerigar  -g-----ca---------------gcacagccg-----t----ggatg----------------------
                       Parrot  -g-----ca---------------gcatgccca-----t----ggatg----------------------
                Scarlet macaw  -g-----ca---------------gcatgccca-----t----ggatg----------------------
                 Mallard duck  -a-----ca---------------gcacgccca-----t----gggtgc-aaggaga-------------
                      Chicken  -g-----ca---------------gcatgccca-----t----ggatgt-aaggaaa-------------
                       Turkey  -g-----ca---------------gcatgccca-----t----ggatgt-aaggaaa-------------
           American alligator  -a-----ca---------------gcacgcccagtagct----gggcga-gaggagagaaaagaataaaa
              Green seaturtle  -a-----ca---------------gtatatccagtagct----gggtgt-aagaaagagt--------g-
               Painted turtle  -a-----ca---------------gtatatccagtagct----gggtgt-aagaaaa-------------
     Chinese softshell turtle  -a-----ca---------------gtatatctaggagct----gagtgt-aaggaaaaggaaaaaagtg-
       Spiny softshell turtle  -a-----ca---------------gtacatctaggagct----gggtgt-aaggaaaaggaaca----aa
                       Lizard  -a-----ca---------------atatcactagccaac----agatac-aagaata-------------
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
           Southern platyfish  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                    Tetraodon  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                    Zebrafish  ======================================================================
                       Medaka  ======================================================================
          Pundamilia nyererei  ======================================================================
                  Zebra mbuna  ======================================================================
        Burton's mouthbreeder  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
               Naked mole-rat  ======================================================================
          Collared flycatcher  ======================================================================
          Medium ground finch  ======================================================================

                        Human  --------g--c-gttggg-t--------attt-----ct---acca-----gcccca-------
                        Chimp  --------g--c-gttggg-t--------attt-----ct---acca-----gcccca-------
                      Gorilla  --------g--c-gttggg-t--------attt-----ct---acca-----gcccca-------
                    Orangutan  --------g--c-gttggg-t--------attt-----tt---acca-----gcccca-------
                       Gibbon  --------g--c-gttggg-t--------attt-----ct---acca-----gcccca-------
                       Rhesus  --------g--c-ctt-gg-t--------attt-----ct---acca-----gcccc--------
          Crab-eating macaque  --------g--c-ctt-gg-t--------attt-----ct---acca-----gcccc--------
                       Baboon  --------g--c-ctt-gg-t--------attt-----ct---acca-----gcccc--------
                 Green monkey  --------g--c-ctt-gg-t--------attt-----ct---acca-----gcccc--------
                     Marmoset  --------g--c-gttggg-t--------attt-----cc---acca-----gctcc--------
              Squirrel monkey  --------g--c-gttggg-t--------attt-----cc---acca-----gctcc--------
                     Bushbaby  --------g--t-gctggg-t--------attt-----cc---acca-----gccca--------
           Chinese tree shrew  --------a--t-gctggg-t--------atgt-----gc---ggcg-----gccca--------
                     Squirrel  --------a--t-gctggg-t--------gttt-----cc---acca-----tccc---------
       Lesser Egyptian jerboa  --------a--t-gctggg-t--------gtcc------c---acca-----gccc---------
                 Prairie vole  -------------gct-------------gtct-----gc---agca-----gccg---------
              Chinese hamster  -------------gctggg-c--------gtct-----gc---agcgctgtccccg---------
               Golden hamster  -------------gctgga-t--------gtct-----gc---agcgctggccccg---------
                        Mouse  -------------gctggg-t--------gtct-----gc---agca-----gcag---------
                          Rat  -------------gttggc-t--------gtct-----gt---agca-----gcag---------
                   Guinea pig  --------a--c-gctgag-t--------attt-----cc---acca-----accca--------
                   Chinchilla  --------a--t-gctgag-t--------attt-----cc---acta-----gccca--------
             Brush-tailed rat  --------a--t-gctgag-t--------attt-----ct---acca-----gtcca--------
                       Rabbit  --------a--c-actggg-a--------cttc----------actg-----gccca--------
                         Pika  -----------c-gctggg-g--------cttc------t---agca-----gccca--------
                          Pig  --------g--t-gctggg-t--------attt-----cc---acca-----gccta--------
                       Alpaca  --------g--t-gctggg-t--------attt-----cc---acca-----accta--------
               Bactrian camel  --------g--t-gctggg-t--------attt-----cc---acca-----accta--------
                      Dolphin  --------g--t-gctggg-t--------attt-----cc---gcca-----gccta--------
                 Killer whale  --------g--t-gctggg-t--------attt-----cc---gcca-----gccta--------
             Tibetan antelope  --------g--c-gcgggg-t--------gttt-----cc---acca-----gcctc--------
                          Cow  --------g--c-gcgggg-t--------gttt-----cc---agca-----gcctc--------
                        Sheep  --------g--c-gcgggg-t--------gttt-----cc---acca-----gcctc--------
                Domestic goat  --------g--c-gcgggg-t--------gttt-----cc---acca-----gcctc--------
                        Horse  --------g--c-actggg-t--------attt-----ct---gcca-----gccca--------
             White rhinoceros  --------g--c-gctggg-t--------attt-----ct---gcca-----gccca--------
                          Cat  --------g--c-actggg-t--------gttt-----ct---g-ga-----ggcca--------
                          Dog  --------g--c-gctggg-t--------attt-----ct---g-ga-----ggcca--------
                      Ferret   --------g--c-gctgggtt--------attt-----ct---g-ga-----ggccg--------
                        Panda  --------g--c-tctccg------------ct-----ct---g-ga-----ggcca--------
               Pacific walrus  --------g--c-actggg-t--------attt-----ct---g-ga-----ggcca--------
                 Weddell seal  --------g--c-actggg-t--------attt-----ct---g-ga-----ggcca--------
             Black flying-fox  ----------------tga-t--------atttgtgctcc---acca-----gccca--------
                      Megabat  ----------------tga-t--------attcgtgctcc---acca-----gccca--------
                Big brown bat  -------------gatggg-t--------attt-----cc---gcca-----gccct--------
         David's myotis (bat)  -------------gatggg-t--------attc-----cc---acc------gccca--------
                     Microbat  -------------gatggg-t--------actc-----cc---gcca-----gccca--------
                     Hedgehog  --------gtat-gctggg-c--------attt-----ct---gtca-----a-cta--------
                        Shrew  --------g--t-actggg-t--------gttt-----ct---gcca-----g-gca--------
              Star-nosed mole  --------g--t-gctggg-t--------gttt-----ct---gcca-----g-cca--------
                     Elephant  --------a--c-gctggg-t--------attc-----cc---acca-----gccca--------
          Cape elephant shrew  --------a--t-gctggg-t--------attt-----cc---acca-----accca--------
                      Manatee  --------a--t-gctggg-t--------gttt-----cc---acca-----gccca--------
             Cape golden mole  --------c--t-gctggg-g--------attt-----cc---acca-----gccca--------
                       Tenrec  --------a--t-gcggggtt--------attt-----cc---acca-----gctca--------
                     Aardvark  --------a--t-gctggg-t--------attt-----cc---acca-----gccca--------
                    Armadillo  --------a--tggctggg-t--------attt-----cc---acag--------cg--------
                      Opossum  --------a--t-gctaag-t--------catt-----ct---acca-----accca--------
              Tasmanian devil  --------a--t-gctaag-t--------catt-----ct---acca-----aacca--------
                      Wallaby  --------a--t-gctttg-t--------catt-----ct---atca-----ttcca--------
                     Platypus  --------c--c-accggg-c--------acca-----ctcaaacct-----gcttc--------
                  Rock pigeon  -------------tgcggc-c--------cttc-----cc---gccc-----aa-----------
                 Saker falcon  --agtgctg--c-tgcaga-c--------cttt-----cc---accc-----agcac------tg
             Peregrine falcon  --agtgctg--c-tgcaga-c--------cttt-----cc---accc-----agcac------tg
                   Budgerigar  -------------tgagga-c--------ccat-----cc---accc-----agcac------tg
                       Parrot  -------------caagag-c--------cctt-----cc---accc-----agcac------cg
                Scarlet macaw  -------------taagaa-c--------cctt-----cc---accc-----agcac------tg
                 Mallard duck  --aatgctg--t-tacaga-----------ttt-----tt---gggt---------c-agcgctg
                      Chicken  --attgctg--t-tacaga-g--------cttt-----ct---atgc-----agtgc------tg
                       Turkey  --agtgctg--t-tacaga-g--------cttt-----ct---atgc-----agtgc------tg
           American alligator  agagtactg--c-tacagg-c--------tttt-----ca---tttc-----aatgc------tg
              Green seaturtle  ------ctg--c-ttcagg-c--------tttt-----ct---ttct-----aatgt------ta
               Painted turtle  --------g--c-ctgaag-cagtgtgcttttt-----ct---ttct-----aatgt------ta
     Chinese softshell turtle  ------ctg--t-ttcagg-g----------tt-----ct---ctct-----aatgt------tg
       Spiny softshell turtle  aaagtgctg--t-ttcagg-g----------tt-----ct---ctct-----aatgt------tg
                       Lizard  ------ttgt-t-tgcagg-c--------attt-----tc---att-------------------
                   Coelacanth  =================================================================
                  Spotted gar  =================================================================
                  Stickleback  =================================================================
           Southern platyfish  =================================================================
       Yellowbelly pufferfish  =================================================================
                         Fugu  =================================================================
                    Tetraodon  =================================================================
           Tibetan ground jay  =================================================================
                  Zebra finch  =================================================================
       White-throated sparrow  =================================================================
     Mexican tetra (cavefish)  =================================================================
                    Zebrafish  =================================================================
                       Medaka  =================================================================
          Pundamilia nyererei  =================================================================
                  Zebra mbuna  =================================================================
        Burton's mouthbreeder  =================================================================
          Princess of Burundi  =================================================================
                 Nile tilapia  =================================================================
               Naked mole-rat  =================================================================
          Collared flycatcher  =================================================================
          Medium ground finch  =================================================================

Inserts between block 16 and 17 in window
  D             Saker falcon 6bp
  D         Peregrine falcon 6bp
  D             Mallard duck 6bp
B D                  Chicken 6bp
B D                   Turkey 6bp
B D       American alligator 6bp
  D          Green seaturtle 4bp
  D           Painted turtle 4bp
  D Chinese softshell turtle 4bp
  D   Spiny softshell turtle 4bp
B D                   Lizard 7bp

Alignment block 17 of 473 in window, 25900484 - 25900501, 18 bps 
B D                     Human  aa--------gg--cc----ccat--------------ctgg--aaca
B D                     Chimp  aa--------gg--cc----ccat--------------ctgg--aaca
B D                   Gorilla  aa--------gg--cc----ccat--------------ctgg--aaca
B D                 Orangutan  aa--------gg--cc----tcat--------------ctgg--aaca
B D                    Gibbon  aa--------gg--ct----ccat--------------ctgg--aaca
B D                    Rhesus  aa--------gg--cc----ccat--------------ctgg--aaca
B D       Crab-eating macaque  aa--------gg--cc----ccat--------------ctgg--aaca
B D                    Baboon  aa--------gg--cc----ccat--------------ctgg--aaca
B D              Green monkey  aa--------gg--cc----ccat--------------ctgg--aaca
B D                  Marmoset  aa--------gg--cc----ccg---------------ttgg--aaca
B D           Squirrel monkey  aa--------gg--cc----ctg---------------cagg--aaca
B D                  Bushbaby  aa--------gg--cc----tcat--------------ctgg--aata
           Chinese tree shrew  aa--------gg--ct----ccct--------------ctga--cacc
B D                  Squirrel  aa--------ag--cc----ccat--------------ctgg--aata
       Lesser Egyptian jerboa  ac--------ag--gc----ccatcggaacaaacagaagcag--aagg
                 Prairie vole  --------------------ccat--------------gtgc--agca
B D           Chinese hamster  -----------g--ct----ccat--------------gtaa--agcc
               Golden hamster  ---------------c----ccac--------------gtcc--agca
B D                     Mouse  ga--------gg--cc----acag--------------a-ga--aaag
B D                       Rat  ga--------gg--cc----tcgg--------------gtga--aaaa
B D                Guinea pig  aa--------gg--ct----tagt--------------ctgg--aaca
                   Chinchilla  aa--------gg--cc----ccat--------------ctgg--aaca
             Brush-tailed rat  aa--------gg--cc----ccat--------------gtgg--aaca
B D                    Rabbit  ga--------gg--cc----tcat--------------ctgg--aaca
B D                      Pika  ag--------gc--cc----gctc--------------cgag--ctcc
B D                       Pig  aa--------gg--cc----ccat--------------ctgg--aata
B D                    Alpaca  aa--------gg--cc----ccat--------------ctgg--aaca
               Bactrian camel  aa--------gg--cc----ccat--------------ctgg--aaca
B D                   Dolphin  aa--------gg--cc----ccat--------------ctgg--aaca
                 Killer whale  aa--------gg--cc----ccac--------------ctgg--aaca
             Tibetan antelope  ga--------gg--cc----ccat--------------ctgg--aaca
B D                       Cow  ga--------gg--cc----ccat--------------ctgg--agca
B D                     Sheep  ga--------gg--cc----ccat--------------ctgg--aaca
                Domestic goat  ga--------gg--cc----ccat--------------ctgg--aaca
B D                     Horse  aa--------gg--cc----tca---------------ctgg--aaca
B D          White rhinoceros  aa--------gg--cc----tcat--------------ctgg--aaca
B D                       Cat  ga--------gg--cc----ccgt--------------ctgg--aaca
B D                       Dog  aa--------gggccc----cgat--------------ctgg--agca
B D                   Ferret   aa--------gg--cc----ccat--------------ctgg--aacg
B D                     Panda  aa--------gg--cc----ccat--------------ctgg--accg
               Pacific walrus  aa--------gg--cc----ccat--------------ctgg--aacg
                 Weddell seal  aa--------gg---c----ccat--------------ctgg--aacg
             Black flying-fox  aa--------gg--cc----ccac--------------ctgg--aaca
B D                   Megabat  aa--------gg--cc----ccac--------------ctgg--aaca
                Big brown bat  aa--------gg--cc----ccac--------------ccag--caca
         David's myotis (bat)  aa--------gg--cc----ccac--------------ccag--cac-
B D                  Microbat  aa--------gg--cc----ccac--------------ccag--caca
B D                  Hedgehog  tc--------at--ct----ctat--------------ctgg--aaca
B D                     Shrew  ga--------ag--cc----cgt---------------cagg--aaca
              Star-nosed mole  ca--------gg--cc----ccca--------------ctgg--aaca
B D                  Elephant  ga--------gg--tt----ctat--------------ctgg--aaca
          Cape elephant shrew  ga--------gg--ta----ccat--------------ctgg--aaca
B D                   Manatee  ga--------gg--tc----ccat--------------ctga--aaca
             Cape golden mole  ga--------gg--cc----ccat--------------a-ag--aaca
B D                    Tenrec  ga--------gg--ct----ccgc--------------cttg--aagc
                     Aardvark  ga--------gg--ct----ccaa--------------ctaa--aaca
B D                 Armadillo  ga--------ca--cc----ccat--------------ctgg--aaca
B D                   Opossum  ga--------gc--aa----cttt--------------gggg--atcc
B D           Tasmanian devil  aa--------gc--aa----cttt--------------gggg--tgc-
B D                   Wallaby  aa--------gg--aa----tttt--------------gggg--ttca
B D                  Platypus  gagagagctggg--ct----ccgc--------------cccg--gacg
  D               Rock pigeon  ---------------------------------------cag--acc-
  D              Saker falcon  ga--------tg--tc----tgct--------------gcag--acc-
  D          Peregrine falcon  ga--------tg--tc----tgct--------------gcag--acc-
B D               Zebra finch  gg--------ct--cc----gatt--------------gtca--cag-
B D                Budgerigar  gg--------ag--cc----tgct--------------gccc--acc-
  D                    Parrot  gg--------ag--cc----tgct--------------gccg--ccc-
  D             Scarlet macaw  gg--------ag--cc----tgct--------------gctg--ccc-
  D              Mallard duck  ga--------tg--cc----tgtt--------------gtat--gca-
B D                   Chicken  ga--------tg--cc----tgct--------------ggag--gcc-
B D                    Turkey  ga--------tg--cc----tgct--------------ggag--gcc-
B D        American alligator  aa--------gg--tc----tggg--------------ttag--gcc-
  D           Green seaturtle  ca--------ag--tc----tgtt--------------ttag--ac--
  D            Painted turtle  -a--------gg--tc----tatt--------------ttag------
  D  Chinese softshell turtle  gt--------gg--tc----ttat--------------tt--------
  D    Spiny softshell turtle  aa--------gg--tc----ttat--------------tt--------
B D                    Lizard  gg--------ca--tcacaatact--------------ctaggagcc-
B D                Coelacanth  ================================================
                 Spotted gar  ================================================
B D               Stickleback  ================================================
          Southern platyfish  ================================================
      Yellowbelly pufferfish  ================================================
B D                      Fugu  ================================================
B D                 Tetraodon  ================================================
          Tibetan ground jay  ================================================
  D    White-throated sparrow  ================================================
    Mexican tetra (cavefish)  ================================================
B D                 Zebrafish  ================================================
B D                    Medaka  ================================================
         Pundamilia nyererei  ================================================
                 Zebra mbuna  ================================================
       Burton's mouthbreeder  ================================================
         Princess of Burundi  ================================================
B D              Nile tilapia  ================================================
B D            Naked mole-rat  ================================================
  D       Collared flycatcher  ================================================
B D       Medium ground finch  ================================================

Inserts between block 17 and 18 in window
B D                 Platypus 120bp

Alignment block 18 of 473 in window, 25900502 - 25900519, 18 bps 
B D                     Human  a--g-----ta-tca----------acca-ggagggg
B D                     Chimp  a--g-----ta-tca----------acca-ggagggt
B D                   Gorilla  a--g-----ta-tca----------acca-ggagggt
B D                 Orangutan  a--g-----ta-tca----------acca-ggagagt
B D                    Gibbon  a--g-----ta-tca----------acca-ggagggt
B D                    Rhesus  a--g-----ta-tca----------acca-ggagggt
B D       Crab-eating macaque  a--g-----ta-tca----------acca-ggagggt
B D                    Baboon  a--g-----ta-tca----------acca-ggagggt
B D              Green monkey  a--g-----ta-tca----------acca-ggagggt
B D                  Marmoset  a--g-----ta-tca----------acca-ggagggt
B D           Squirrel monkey  a--g-----ta-tca----------agca-ggagggt
B D                  Bushbaby  a--a-----ta-taa----------acta-ggtgtgc
           Chinese tree shrew  a--a-----ca-caa----------acta------gt
B D                  Squirrel  g-----------taa----------acta-ggagggt
       Lesser Egyptian jerboa  g------------------------------------
                 Prairie vole  g------------------------------------
B D           Chinese hamster  g------------------------------------
               Golden hamster  g------------------------------------
B D                     Mouse  g------------------------------------
B D                       Rat  g------------------------------------
B D                Guinea pig  a--a-----ta-taa----------acta-ggagggc
                   Chinchilla  a--a-----ta-taa----------acta-ggaggtc
             Brush-tailed rat  a--a-----ta-taa----------act----aggtc
B D                    Rabbit  a--a-----ta-tga----------actc-ggagggt
B D                      Pika  g--agggtctc-tga----------gctc-cgagggt
B D                       Pig  a--a-----ta-taa----------acta-ggagggt
B D                    Alpaca  a--a-----ta-taa----------acca-ggagggc
               Bactrian camel  a--a-----ta-taa----------acca-ggagggc
B D                   Dolphin  a--a-----ta-taa----------acta-ggagggt
                 Killer whale  a--a-----ta-taa----------acta-ggagggt
             Tibetan antelope  a--a-----ta-caa----------acta-ggagagt
B D                       Cow  a--a-----ta-caa----------acta--gagggt
B D                     Sheep  a--a-----ta-caa----------acta-ggagggt
                Domestic goat  a--a-----ta-caa----------acta-ggagggt
B D                     Horse  a--a-----ta-caa----------acta-ggagggt
B D          White rhinoceros  a--a-----ta-tac----------acta-ggagggt
B D                       Cat  a--a-----ca-gca----------accg-ggagggc
B D                       Dog  a--a-----ca-gaa----------acca-ggagggt
B D                   Ferret   a--a-----ca-gaa----------gcta-ggagggt
B D                     Panda  a--a-----ca-gaa----------acta-ggagggt
               Pacific walrus  a--a-----ca-gaa----------actc-ggagggt
                 Weddell seal  a--a-----ca-gaa----------acta-ggaaggt
             Black flying-fox  acta-----ta-tca----------gcta-ggagggt
B D                   Megabat  acta-----ta-tca----------gcta-ggagggt
                Big brown bat  a--a-----ta-gaa----------gcta-ggagggt
         David's myotis (bat)  a--a-----ca-gaa----------gcta-ggagggt
B D                  Microbat  a--a-----ca-gaa----------gcta-ggagggt
B D                  Hedgehog  t--a-----ta---a----------acta-agagggt
B D                     Shrew  a--a-----tataaa----------acaa-ggactat
              Star-nosed mole  t--a-----ca-gaa----------accc-ggacagt
B D                  Elephant  a--a-----ta-tag----------acga-g-agggt
          Cape elephant shrew  a--a-----ta-tag----------acta-gaagggt
B D                   Manatee  a--a-----ta-tag----------atg----agagt
             Cape golden mole  a--a-----ta-cag----------tcta-ggagggt
B D                    Tenrec  c--c-----tg-tgg----------actg-gtgggag
                     Aardvark  a--a-----ta-cag----------atca-ggagggt
B D                 Armadillo  g--a-----ct-taa----------acct-ggagggt
B D                   Opossum  a--a-----tt-tag----------actg-ga-aggt
B D           Tasmanian devil  a--a-----tt-taa----------actg-ggcaagt
B D                   Wallaby  a--a-----tc-taa----------acag-cataggt
  D               Rock pigeon  ------------tcg----------gcta--------
  D              Saker falcon  ------------tca----------gcca--------
  D          Peregrine falcon  ------------tca----------gcca--------
B D               Zebra finch  ------------gcacaggacaagggcgg--------
B D                Budgerigar  ------------tca----------gcca--------
  D                    Parrot  ------------tca----------gcca--------
  D             Scarlet macaw  ------------tca----------gcca--------
  D              Mallard duck  ------------tcg----------gcca--------
B D                   Chicken  ------------tca----------gcca--------
B D                    Turkey  ------------tca----------gcca--------
B D        American alligator  ------------tca----------gtcat-------
  D           Green seaturtle  ------------aca----------gtca--------
  D            Painted turtle  ------------aca----------gtca--------
  D  Chinese softshell turtle  -------------ca----------gtca--------
  D    Spiny softshell turtle  -------------ca----------gtca--------
B D                    Lizard  ------------aca----------gctac-------
B D                Coelacanth  =====================================
                 Spotted gar  =====================================
B D               Stickleback  =====================================
          Southern platyfish  =====================================
      Yellowbelly pufferfish  =====================================
B D                      Fugu  =====================================
B D                 Tetraodon  =====================================
          Tibetan ground jay  =====================================
  D    White-throated sparrow  =====================================
    Mexican tetra (cavefish)  =====================================
B D                 Zebrafish  =====================================
B D                    Medaka  =====================================
         Pundamilia nyererei  =====================================
                 Zebra mbuna  =====================================
       Burton's mouthbreeder  =====================================
         Princess of Burundi  =====================================
B D              Nile tilapia  =====================================
B D            Naked mole-rat  =====================================
  D       Collared flycatcher  =====================================
B D       Medium ground finch  =====================================
B D                  Platypus  =====================================

Inserts between block 18 and 19 in window
B D                   Tenrec 20bp

Alignment block 19 of 473 in window, 25900520 - 25900540, 21 bps 
B D                     Human  c---------t---ct--a---tggcttg---att--tattaa
B D                     Chimp  c---------t---ct--a---tggcttg---att--tattaa
B D                   Gorilla  c---------t---ct--a---tggcttg---att--tattaa
B D                 Orangutan  c---------t---ct--a---tggcttg---att--tattaa
B D                    Gibbon  c---------t---ct--a---tggcttg---att--tattaa
B D                    Rhesus  c---------t---ct--a---tggcttg---att--tattaa
B D       Crab-eating macaque  c---------t---ct--a---tggcttg---att--tattaa
B D                    Baboon  c---------t---ct--a---tggcttg---att--tattaa
B D              Green monkey  c---------t---ct--a---tggcttg---att--tattaa
B D                  Marmoset  c---------t---ct--a---cagcttgataatt--tattaa
B D           Squirrel monkey  c---------t---ct--a---cagcttgataatt--tattaa
B D                  Bushbaby  c---------t---ct--a---tggcttgataatt--tctt-a
           Chinese tree shrew  c---------c---tc--a---cagcctcgc-cct--tgatga
B D                  Squirrel  c---------t---ct--a---cagcttga----t--aatt-a
       Lesser Egyptian jerboa  ----------t---ctcct---cagcttg-----t--cact-a
                 Prairie vole  ----------t---c---a---caacggg-----t--cact-a
B D           Chinese hamster  ----------t---ct--a---taacttg-----t--ctct-a
               Golden hamster  ----------t---ct--a---taacttg-----t--cact-a
B D                     Mouse  ----------t---ct--a---cggcctg-----t--cact-a
B D                       Rat  ----------t---ct--a---gggcttg-----t--cact-a
B D                Guinea pig  ----------t---cc--a---taacttgccaatt--tatt-a
                   Chinchilla  ----------t---ct--a---taacttgccaatt--tatt-a
             Brush-tailed rat  ----------t---ct--g---taacttgccaatt--tatt-a
B D                    Rabbit  c---------t---ct--a---cggcttggtcgtt--tatc-a
B D                      Pika  c---------t---ct--g---cggctggggaatt--tgcc-a
B D                       Pig  c---------t---tt--t---tcacttgacaggt--tatt-a
B D                    Alpaca  c---------t---ct--a---tcacttgacaatt--tata-a
               Bactrian camel  c---------t---ct--a---tcgcttgacagtt--tata-a
B D                   Dolphin  c---------t---ct--a---tcactggacaatt--tatt-a
                 Killer whale  c---------t---ct--a---tcactggacaatt--tatt-a
             Tibetan antelope  c---------c---ct--a---tcactggacaact--tatt-a
B D                       Cow  c---------t---ct--g---tcactggacaact--tatc-a
B D                     Sheep  c---------c---ct--a---tcactggacaact--tatt-a
                Domestic goat  c---------c---ct--a---tcactggacaact--tatt-a
B D                     Horse  c---------t---ct--a---tcacttgacaatt--tatt-a
B D          White rhinoceros  c---------t---ct--a---tcacttgacaatt--tatt-a
B D                       Cat  c---------t---ct--a---acacgtcacagtt--tatt-a
B D                       Dog  c---------t---cc--g---tcacttcacagtttatatt-a
B D                   Ferret   c---------t---ct--g---tcacttcacagtt--tatt-a
B D                     Panda  c---------t---ct--g---tcacttcacagtt--tatt-a
               Pacific walrus  c---------t---ct--g---tcacttcacagtt--tatt-a
                 Weddell seal  c---------t---ct--g---tcactccagagtt--tatt-a
             Black flying-fox  c---------t---ct--a---tcattggacaatt--tatt-c
B D                   Megabat  c---------t---ct--a---tcattggacaatt--tatt-c
                Big brown bat  c---------t---cc--a---tcactgggcaatt--tatt-a
         David's myotis (bat)  c---------t---cc--a---tcactgggcagtt--tatt-a
B D                  Microbat  c---------t---cc--a---tcactgggcaatt--tatt-a
B D                  Hedgehog  c---------tcaccc--a---tcacttgacaatt--tgtt-a
B D                     Shrew  --------------tt--a---ttacctg-ccgct--gact--
              Star-nosed mole  c---------g---ct--a---tcactt--cagtt--tatt-a
B D                  Elephant  c---------t---ct--a---cagcttgacaatt--a-----
          Cape elephant shrew  c---------t---ct--a---gggcttgataatt--a-----
B D                   Manatee  c---------t---ct--a---tagcttgataatt--a-----
             Cape golden mole  c---------t---cc--a---cagctcggtaaca--a-----
                     Aardvark  c---------t---ct--a---tagcttggtaatt--a-----
B D                 Armadillo  t---------t---ct--a---tca------------------
B D                   Opossum  c---------t---gt--t---cggctgaagtggt--taaa-a
B D           Tasmanian devil  c---------t---at--t---cagctgaagtagt--taaa-a
B D                   Wallaby  c---------a---gt--g---aagct----tgtt--tcaa-a
  D               Rock pigeon  ----------a---cc--c---atttt----------------
  D              Saker falcon  ----------a---ct--g---ctttt----------------
  D          Peregrine falcon  ----------a---ct--g---ctttt----------------
B D               Zebra finch  ----------g---ct--ctggcgctg----------------
B D                Budgerigar  ----------a---cc--c---ctttg----------------
  D                    Parrot  ----------a---cc--c---atttg----------------
  D             Scarlet macaw  ----------a---cc--c---atttg----------------
  D              Mallard duck  ----------a---cc--a---attct----------------
B D                   Chicken  ----------a---ct--g---ttgat----------------
B D                    Turkey  ----------a---cc--g---tttat----------------
B D        American alligator  ctttacattgg---cc--a---ctttt----------------
  D           Green seaturtle  ----------t---ct--a---taaaa----------------
  D            Painted turtle  ----------t---ct--a---taaaa----------------
  D  Chinese softshell turtle  ----------t---ct--a---ttaaa----------------
  D    Spiny softshell turtle  ----------t---ct--a---taaaa----------------
B D                    Lizard  ----------a---ct--g---gcgtt----------------
B D                Coelacanth  ===========================================
                 Spotted gar  ===========================================
B D               Stickleback  ===========================================
          Southern platyfish  ===========================================
      Yellowbelly pufferfish  ===========================================
B D                      Fugu  ===========================================
B D                 Tetraodon  ===========================================
          Tibetan ground jay  ===========================================
  D    White-throated sparrow  ===========================================
    Mexican tetra (cavefish)  ===========================================
B D                 Zebrafish  ===========================================
B D                    Medaka  ===========================================
         Pundamilia nyererei  ===========================================
                 Zebra mbuna  ===========================================
       Burton's mouthbreeder  ===========================================
         Princess of Burundi  ===========================================
B D              Nile tilapia  ===========================================
B D            Naked mole-rat  ===========================================
  D       Collared flycatcher  ===========================================
B D       Medium ground finch  ===========================================
B D                  Platypus  ===========================================
B D                    Tenrec  ===========================================

Inserts between block 19 and 20 in window
  D              Rock pigeon 19bp
  D             Saker falcon 17bp
  D         Peregrine falcon 17bp
B D              Zebra finch 4bp
B D               Budgerigar 6bp
  D                   Parrot 6bp
  D            Scarlet macaw 6bp
  D             Mallard duck 16bp
B D                  Chicken 8bp
B D                   Turkey 8bp
B D       American alligator 13bp
  D          Green seaturtle 27bp
  D           Painted turtle 26bp
  D Chinese softshell turtle 22bp
  D   Spiny softshell turtle 22bp
B D                   Lizard 18bp

Alignment block 20 of 473 in window, 25900541 - 25900549, 9 bps 
B D                     Human  ------cctaactca---
B D                     Chimp  ------cctaactca---
B D                   Gorilla  ------cctaactca---
B D                 Orangutan  ------cctaactcg---
B D                    Gibbon  ------cctaactcg---
B D                    Rhesus  ------cctaactcg---
B D       Crab-eating macaque  ------cctaactcg---
B D                    Baboon  ------cctaactcg---
B D              Green monkey  ------cctaactcg---
B D                  Marmoset  ------cctaactca---
B D           Squirrel monkey  ------cctaactca---
B D                  Bushbaby  ------tctgaatag---
           Chinese tree shrew  ------cctaacggggtt
B D                  Squirrel  ------cctgaacag---
       Lesser Egyptian jerboa  ------cctgaatag---
                 Prairie vole  ------cctggaaag---
B D           Chinese hamster  ------cctgaagag---
               Golden hamster  ------cctggagag---
B D                     Mouse  ------cctgaacag---
B D                       Rat  ------cctgaacag---
B D                Guinea pig  ------cctgaacag---
                   Chinchilla  ------cctgaacag---
             Brush-tailed rat  ------cctgaacaa---
B D                    Rabbit  ------cccgaataa---
B D                      Pika  ------cctgaagag---
B D                       Pig  ------ctcagagag---
B D                    Alpaca  ------cctgaatag---
               Bactrian camel  ------cctgaatag---
B D                   Dolphin  ------cctggacag---
                 Killer whale  ------cctggacag---
             Tibetan antelope  ------cctggacag---
B D                       Cow  ------cctggacag---
B D                     Sheep  ------cctggacag---
                Domestic goat  ------cctggacag---
B D                     Horse  ------cctggatag---
B D          White rhinoceros  ------cctggatag---
B D                       Cat  ------cctgtagag---
B D                       Dog  ------cctgtacag---
B D                   Ferret   ------cctgtacag---
B D                     Panda  ------cctgtacag---
               Pacific walrus  ------cctgtacag---
                 Weddell seal  ------cctgtacag---
             Black flying-fox  ------cctggatag---
B D                   Megabat  ------cttggatag---
                Big brown bat  ------cctggatcg---
         David's myotis (bat)  ------cctgggtcg---
B D                  Microbat  ------cctgggtcg---
B D                  Hedgehog  ------cctggacaa---
B D                     Shrew  ------cctgcacag---
              Star-nosed mole  ------ccaggacag---
B D                  Elephant  ------cctgaacaa---
          Cape elephant shrew  ------cctcaaaag---
B D                   Manatee  ------cctgaacag---
             Cape golden mole  ------tctgatcag---
B D                    Tenrec  ------cctgaacag---
                     Aardvark  ------cctgaacag---
B D                 Armadillo  ------cctgaagag---
B D                   Opossum  ------cctggggag---
B D           Tasmanian devil  ------cctggatag---
B D                   Wallaby  ------cccaagtag---
  D               Rock pigeon  ------------cag---
  D              Saker falcon  ------------cag---
  D          Peregrine falcon  ------------cag---
  D    White-throated sparrow  -cctggctcctgagg---
B D       Medium ground finch  -cctggctcctgagg---
B D               Zebra finch  ---------ctgagg---
B D                Budgerigar  -catgtcatttgcag---
  D                    Parrot  -caggtcattttcag---
  D             Scarlet macaw  -catgtcacttccag---
  D              Mallard duck  ------------cag---
B D                   Chicken  ------------cag---
B D                    Turkey  ------------cag---
B D        American alligator  gctggttccaggaaa---
  D           Green seaturtle  ----attagttccag---
  D            Painted turtle  ----actagtttcag---
  D  Chinese softshell turtle  ----actagttccag---
  D    Spiny softshell turtle  ----accagttccag---
B D                    Lizard  -----ctagtctcag---
B D                Coelacanth  ==================
                 Spotted gar  ==================
B D               Stickleback  ==================
          Southern platyfish  ==================
      Yellowbelly pufferfish  ==================
B D                      Fugu  ==================
B D                 Tetraodon  ==================
          Tibetan ground jay  ==================
    Mexican tetra (cavefish)  ==================
B D                 Zebrafish  ==================
B D                    Medaka  ==================
         Pundamilia nyererei  ==================
                 Zebra mbuna  ==================
       Burton's mouthbreeder  ==================
         Princess of Burundi  ==================
B D              Nile tilapia  ==================
B D            Naked mole-rat  ==================
  D       Collared flycatcher  ==================
B D                  Platypus  ==================

Alignment block 21 of 473 in window, 25900550 - 25900551, 2 bps 
B D                     Human  aa
B D                     Chimp  aa
B D                   Gorilla  aa
B D                 Orangutan  aa
B D                    Gibbon  aa
B D                    Rhesus  aa
B D       Crab-eating macaque  aa
B D                    Baboon  aa
B D              Green monkey  aa
B D                  Marmoset  aa
B D           Squirrel monkey  aa
B D                  Bushbaby  aa
           Chinese tree shrew  aa
B D                  Squirrel  aa
       Lesser Egyptian jerboa  aa
                 Prairie vole  aa
B D           Chinese hamster  aa
               Golden hamster  aa
B D                     Mouse  aa
B D                       Rat  aa
B D                Guinea pig  aa
                   Chinchilla  aa
             Brush-tailed rat  aa
B D                    Rabbit  aa
B D                      Pika  aa
B D                       Pig  aa
B D                    Alpaca  aa
               Bactrian camel  aa
B D                   Dolphin  aa
                 Killer whale  aa
             Tibetan antelope  aa
B D                       Cow  aa
B D                     Sheep  aa
                Domestic goat  aa
B D                     Horse  aa
B D          White rhinoceros  aa
B D                       Cat  aa
B D                       Dog  aa
B D                   Ferret   aa
B D                     Panda  aa
               Pacific walrus  aa
                 Weddell seal  aa
             Black flying-fox  aa
B D                   Megabat  aa
                Big brown bat  aa
         David's myotis (bat)  aa
B D                  Microbat  aa
B D                  Hedgehog  aa
B D                     Shrew  aa
              Star-nosed mole  -a
B D                  Elephant  aa
          Cape elephant shrew  aa
B D                   Manatee  aa
             Cape golden mole  aa
B D                    Tenrec  aa
                     Aardvark  aa
B D                 Armadillo  aa
B D                   Opossum  aa
B D           Tasmanian devil  aa
B D                   Wallaby  aa
  D               Rock pigeon  a-
  D              Saker falcon  a-
  D          Peregrine falcon  a-
B D       Medium ground finch  a-
B D               Zebra finch  a-
B D                Budgerigar  c-
  D                    Parrot  g-
  D             Scarlet macaw  a-
  D              Mallard duck  a-
B D                   Chicken  a-
B D                    Turkey  a-
B D        American alligator  a-
  D           Green seaturtle  a-
  D            Painted turtle  a-
  D  Chinese softshell turtle  a-
  D    Spiny softshell turtle  a-
B D                    Lizard  a-
B D                 Zebrafish  aa
B D                Coelacanth  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
          Tibetan ground jay  ==
  D    White-throated sparrow  --
    Mexican tetra (cavefish)  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
B D            Naked mole-rat  ==
  D       Collared flycatcher  ==
B D                  Platypus  ==

Alignment block 22 of 473 in window, 25900552 - 25900554, 3 bps 
B D                     Human  aga-
B D                     Chimp  aga-
B D                   Gorilla  aga-
B D                 Orangutan  aga-
B D                    Gibbon  aga-
B D                    Rhesus  aga-
B D       Crab-eating macaque  aga-
B D                    Baboon  aga-
B D              Green monkey  aga-
B D                  Marmoset  aaa-
B D           Squirrel monkey  aaa-
B D                  Bushbaby  aga-
           Chinese tree shrew  aga-
B D                  Squirrel  aga-
       Lesser Egyptian jerboa  agg-
                 Prairie vole  agg-
B D           Chinese hamster  aag-
               Golden hamster  agg-
B D                     Mouse  aga-
B D                       Rat  aga-
B D                Guinea pig  aga-
                   Chinchilla  aga-
             Brush-tailed rat  aga-
B D                    Rabbit  aca-
B D                      Pika  gga-
B D                       Pig  aga-
B D                    Alpaca  aga-
               Bactrian camel  aga-
B D                   Dolphin  aga-
                 Killer whale  aga-
             Tibetan antelope  aga-
B D                       Cow  aga-
B D                     Sheep  aga-
                Domestic goat  aga-
B D                     Horse  aga-
B D          White rhinoceros  aga-
B D                       Cat  aga-
B D                       Dog  aga-
B D                   Ferret   aga-
B D                     Panda  aga-
               Pacific walrus  agg-
                 Weddell seal  agg-
             Black flying-fox  aga-
B D                   Megabat  aga-
                Big brown bat  ata-
         David's myotis (bat)  ata-
B D                  Microbat  ata-
B D                  Hedgehog  aga-
B D                     Shrew  aga-
              Star-nosed mole  aga-
B D                  Elephant  aga-
          Cape elephant shrew  aga-
B D                   Manatee  aga-
             Cape golden mole  aga-
B D                    Tenrec  aca-
                     Aardvark  aga-
B D                 Armadillo  aga-
B D                   Opossum  aga-
B D           Tasmanian devil  aga-
B D                   Wallaby  aga-
B D                Coelacanth  aga-
B D                 Zebrafish  -aac
  D    Spiny softshell turtle  ----
                 Spotted gar  ====
B D               Stickleback  ====
          Southern platyfish  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
B D                 Tetraodon  ====
B D                    Turkey  ----
B D                   Chicken  ----
  D              Mallard duck  ----
          Tibetan ground jay  ====
B D               Zebra finch  ----
  D    White-throated sparrow  ----
    Mexican tetra (cavefish)  ====
B D                    Medaka  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
  D            Painted turtle  ----
  D           Green seaturtle  ----
B D        American alligator  ----
  D             Scarlet macaw  ----
B D                Budgerigar  ----
B D            Naked mole-rat  ====
  D               Rock pigeon  ----
  D       Collared flycatcher  ====
B D       Medium ground finch  ----
B D                    Lizard  ----
  D          Peregrine falcon  ----
  D              Saker falcon  ----
  D                    Parrot  ----
B D                  Platypus  ====
  D  Chinese softshell turtle  ----

Alignment block 23 of 473 in window, 25900555 - 25900556, 2 bps 
B D                     Human  ag
B D                     Chimp  ag
B D                   Gorilla  ag
B D                 Orangutan  ag
B D                    Gibbon  ag
B D                    Rhesus  ag
B D       Crab-eating macaque  ag
B D                    Baboon  ag
B D              Green monkey  ag
B D                  Marmoset  ag
B D           Squirrel monkey  ag
B D                  Bushbaby  ag
           Chinese tree shrew  ag
B D                  Squirrel  ag
       Lesser Egyptian jerboa  ag
                 Prairie vole  ag
B D           Chinese hamster  ag
               Golden hamster  aa
B D                     Mouse  ag
B D                       Rat  ag
B D                Guinea pig  ag
                   Chinchilla  ag
             Brush-tailed rat  ag
B D                    Rabbit  ag
B D                      Pika  at
B D                       Pig  ag
B D                    Alpaca  ag
               Bactrian camel  ag
B D                   Dolphin  ag
                 Killer whale  ag
             Tibetan antelope  ag
B D                       Cow  ag
B D                     Sheep  ag
                Domestic goat  ag
B D                     Horse  ag
B D          White rhinoceros  ag
B D                       Cat  ag
B D                       Dog  ag
B D                   Ferret   ag
B D                     Panda  ag
               Pacific walrus  ag
                 Weddell seal  ag
             Black flying-fox  ag
B D                   Megabat  ag
                Big brown bat  ag
         David's myotis (bat)  ag
B D                  Microbat  ag
B D                  Hedgehog  ag
B D                     Shrew  ag
              Star-nosed mole  ag
B D                  Elephant  aa
          Cape elephant shrew  ag
B D                   Manatee  ag
             Cape golden mole  ag
B D                    Tenrec  ag
                     Aardvark  ag
B D                 Armadillo  ag
B D                   Opossum  ac
B D           Tasmanian devil  ag
B D                   Wallaby  at
B D                  Platypus  ac
  D               Rock pigeon  ag
  D              Saker falcon  ag
  D          Peregrine falcon  ag
  D    White-throated sparrow  ag
B D       Medium ground finch  ag
B D               Zebra finch  ag
B D                Budgerigar  ag
  D                    Parrot  ag
  D             Scarlet macaw  ag
  D              Mallard duck  aa
B D                   Chicken  aa
B D                    Turkey  aa
B D        American alligator  aa
  D           Green seaturtle  aa
  D            Painted turtle  aa
  D  Chinese softshell turtle  aa
  D    Spiny softshell turtle  aa
B D                    Lizard  aa
B D                Coelacanth  aa
B D                 Zebrafish  tg
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
          Tibetan ground jay  ==
    Mexican tetra (cavefish)  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
B D            Naked mole-rat  ==
  D       Collared flycatcher  ==

Inserts between block 23 and 24 in window
B D               Coelacanth 6bp

Alignment block 24 of 473 in window, 25900557 - 25900567, 11 bps 
B D                     Human  --tcactgccac----------------c
B D                     Chimp  --tcactgccac----------------c
B D                   Gorilla  --tcactgccac----------------c
B D                 Orangutan  --tcactgccac----------------c
B D                    Gibbon  --tcactgccac----------------c
B D                    Rhesus  --tcactgccac----------------c
B D       Crab-eating macaque  --tcactgccac----------------c
B D                    Baboon  --tcactgccac----------------g
B D              Green monkey  --tcactgccac----------------c
B D                  Marmoset  --tcactgccac----------------c
B D           Squirrel monkey  --tcactgccac----------------c
B D                  Bushbaby  --tcactgccac----------------c
           Chinese tree shrew  --tcaccgccac----------------c
B D                  Squirrel  --caacagccac----------------c
       Lesser Egyptian jerboa  --ccactgctac----------------c
                 Prairie vole  --tcaccgccac----------------c
B D           Chinese hamster  --tcattgcca-----------------c
               Golden hamster  --tcactgcca-----------------c
B D                     Mouse  --tcactgccac----------------c
B D                       Rat  --tcactgcgac----------------c
B D                Guinea pig  --tcactgccac----------------c
                   Chinchilla  --tcactgccac----------------c
             Brush-tailed rat  --tcactgccac----------------c
B D                    Rabbit  --tcccggccac----------------c
B D                      Pika  --tcactgccac----------------c
B D                       Pig  --tcactgccac----------------c
B D                    Alpaca  --tcactgccac----------------c
               Bactrian camel  --tcactgccac----------------c
B D                   Dolphin  --tcactgccac----------------c
                 Killer whale  --tcactgccac----------------c
             Tibetan antelope  --tcactgccac----------------c
B D                       Cow  --tcactgccac----------------c
B D                     Sheep  --tcactgccac----------------c
                Domestic goat  --tcactgccac----------------c
B D                     Horse  --tcactgccac----------------c
B D          White rhinoceros  --tcactgccac----------------c
B D                       Cat  --tcactgccac----------------c
B D                       Dog  --tcactgccac----------------c
B D                   Ferret   --tcactgccac----------------c
B D                     Panda  --tcactgccac----------------c
               Pacific walrus  --tcactgccac----------------c
                 Weddell seal  --tcc---ccgc----------------c
             Black flying-fox  --ttactggcat----------------c
B D                   Megabat  --ttactggcat----------------c
                Big brown bat  --tcactgccac----------------t
         David's myotis (bat)  --tcactgccac----------------t
B D                  Microbat  --tcactgccac----------------t
B D                  Hedgehog  --tcactgccac----------------c
B D                     Shrew  --tc---accgc----------------c
              Star-nosed mole  --ccactaccac----------------c
B D                  Elephant  --tcactgccac----------------c
          Cape elephant shrew  --tcaccgccac----------------c
B D                   Manatee  --tcactgccac----------------c
             Cape golden mole  --tcgctgtcac----------------c
B D                    Tenrec  --tcgctgccac----------------c
                     Aardvark  --tcactgccac----------------c
B D                 Armadillo  --actctgccat----------------g
B D                   Opossum  --tcactgcca-----------------t
B D           Tasmanian devil  --tcactgcca-----------------t
B D                   Wallaby  --tcactgcca------------------
B D                  Platypus  --tcaccaggtt----------------t
  D               Rock pigeon  --tcagtctcat-----------------
  D              Saker falcon  --taattctcatgat--------------
  D          Peregrine falcon  --taattctcatgat--------------
  D    White-throated sparrow  --gca-gcagat-----------------
B D       Medium ground finch  --gcaggcagat-----------------
B D               Zebra finch  --gcaggcagat-----------------
B D                Budgerigar  --ccattctcat-----------------
  D                    Parrot  --tcactgccat-----------------
  D             Scarlet macaw  --ccactcgcat-----------------
  D              Mallard duck  --tgattctcat---ggt-----------
B D                   Chicken  --tcattctcat---gat-----------
B D                    Turkey  --tcattctcat---gat-----------
B D        American alligator  --gaagtcccat-----------------
  D           Green seaturtle  --taattcactt------gtgat------
  D            Painted turtle  --taattcactt------gtgat------
  D  Chinese softshell turtle  --taattcactt------atggt------
  D    Spiny softshell turtle  --taattcactt------atggt------
B D                    Lizard  ---cagtcacct-----------gtgat-
B D                Coelacanth  --tcaca----------------------
B D                 Zebrafish  gcacaataaca------------------
                 Spotted gar  =============================
B D               Stickleback  =============================
          Southern platyfish  =============================
      Yellowbelly pufferfish  =============================
B D                      Fugu  =============================
B D                 Tetraodon  =============================
          Tibetan ground jay  =============================
    Mexican tetra (cavefish)  =============================
B D                    Medaka  =============================
         Pundamilia nyererei  =============================
                 Zebra mbuna  =============================
       Burton's mouthbreeder  =============================
         Princess of Burundi  =============================
B D              Nile tilapia  =============================
B D            Naked mole-rat  =============================
  D       Collared flycatcher  =============================

Alignment block 25 of 473 in window, 25900568 - 25900575, 8 bps 
B D                     Human  aacagcac
B D                     Chimp  aacagcac
B D                   Gorilla  aacagcac
B D                 Orangutan  aacagcac
B D                    Gibbon  aacagcac
B D                    Rhesus  aacagcac
B D       Crab-eating macaque  aacagcac
B D                    Baboon  aacagcac
B D              Green monkey  aacagcac
B D                  Marmoset  aacagcac
B D           Squirrel monkey  aacagcac
B D                  Bushbaby  aacagcac
           Chinese tree shrew  aacagcac
B D                  Squirrel  aacagcac
       Lesser Egyptian jerboa  cacagcac
                 Prairie vole  aacagcac
B D           Chinese hamster  aacagcac
               Golden hamster  aacagcac
B D                     Mouse  aacagcac
B D                       Rat  aacagcac
B D                Guinea pig  aacagcac
                   Chinchilla  aacagcac
             Brush-tailed rat  aatagcac
B D                    Rabbit  aacagcac
B D                      Pika  -acagcac
B D                       Pig  aacagcac
B D                    Alpaca  aacagcac
               Bactrian camel  aacagcac
B D                   Dolphin  aacagcac
                 Killer whale  aacagcac
             Tibetan antelope  aacagcac
B D                       Cow  aacagcac
B D                     Sheep  aacagcac
                Domestic goat  aacagcac
B D                     Horse  aacagcac
B D          White rhinoceros  aacagcac
B D                       Cat  aacagcac
B D                       Dog  aacagcac
B D                   Ferret   aacagcac
B D                     Panda  aacagcac
               Pacific walrus  aacagcac
                 Weddell seal  gacagcac
             Black flying-fox  aacagcac
B D                   Megabat  aacagcac
                Big brown bat  aacagcac
         David's myotis (bat)  aacagcac
B D                  Microbat  aacagcac
B D                  Hedgehog  aacagcac
B D                     Shrew  aacagcac
              Star-nosed mole  aacagcac
B D                  Elephant  aacagcac
          Cape elephant shrew  aacatcac
B D                   Manatee  gacagcac
             Cape golden mole  aacagcac
B D                    Tenrec  agcagcac
                     Aardvark  aacagcac
B D                 Armadillo  aacagcac
B D                   Opossum  aacagcac
B D           Tasmanian devil  aacagcac
B D                  Platypus  aacagcac
  D               Rock pigeon  aacagcac
  D              Saker falcon  aacagcac
  D          Peregrine falcon  aacagcac
  D       Collared flycatcher  aacagcac
  D    White-throated sparrow  aacagcac
B D       Medium ground finch  aacagcac
B D               Zebra finch  aacagcac
           Tibetan ground jay  aacagcac
B D                Budgerigar  aagagcac
  D                    Parrot  aacagcac
  D             Scarlet macaw  aacagcac
  D              Mallard duck  aacagcac
B D                   Chicken  aacagcac
B D                    Turkey  aacagcac
B D        American alligator  aacagcac
  D           Green seaturtle  aatagcac
  D            Painted turtle  aatagcac
  D  Chinese softshell turtle  aatagcac
  D    Spiny softshell turtle  aatagcac
B D                    Lizard  aacagcac
B D                Coelacanth  acaaatat
B D                 Zebrafish  aacaac--
                 Spotted gar  ========
B D               Stickleback  ========
          Southern platyfish  ========
      Yellowbelly pufferfish  ========
B D                      Fugu  ========
B D                 Tetraodon  ========
    Mexican tetra (cavefish)  ========
B D                    Medaka  ========
         Pundamilia nyererei  ========
                 Zebra mbuna  ========
       Burton's mouthbreeder  ========
         Princess of Burundi  ========
B D              Nile tilapia  ========
B D            Naked mole-rat  ========
B D                   Wallaby  --------

Alignment block 26 of 473 in window, 25900576 - 25900614, 39 bps 
B D                     Human  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D                     Chimp  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D                   Gorilla  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D                 Orangutan  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D                    Gibbon  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D                    Rhesus  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D       Crab-eating macaque  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D                    Baboon  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D              Green monkey  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D                  Marmoset  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D           Squirrel monkey  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
B D                  Bushbaby  tgtgcag-ttttat--taa-----ccattcaagtccagtagcatctg
           Chinese tree shrew  tgtgcag-ctttat--taa-----ccattcaagtacagtagcatctc
B D                  Squirrel  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
       Lesser Egyptian jerboa  tgtgtgg--tgcat--taa-----ccattcaagcacagaagcatctg
                 Prairie vole  tgtgcag--tttat--taa-----ccattcaagtacagtagcatctg
B D           Chinese hamster  tgtgcag--tttat--taa-----ccattcaagtacagtagcatctg
               Golden hamster  tgtgcag--tttat--taa-----ccattcaagtacagtagcatctg
B D                     Mouse  tgtgcag--tttat--taa-----ccattcaagtacagtagcatctg
B D                       Rat  tgtgcag--tttat--taa-----ccattcaagtacagtagcatctg
B D                Guinea pig  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
                   Chinchilla  tgtgccg-ttttat--taa-----ccattcaagtacagtagcatctg
             Brush-tailed rat  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                    Rabbit  tgtgcag-ctttat--taa-----ccattcaagtacagtagcatctg
B D                      Pika  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                       Pig  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                    Alpaca  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
               Bactrian camel  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                   Dolphin  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
                 Killer whale  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
             Tibetan antelope  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                       Cow  tgtgcag-ttttat--taa-----ccattcaagtacagtagcgtctg
B D                     Sheep  tgtgcag-ttttat--taa-----ccattcaagtacagtagcgtctg
                Domestic goat  tgtgcag-ttttat--taa-----ccattcaagtacagtagcgtctg
B D                     Horse  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D          White rhinoceros  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                       Cat  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                       Dog  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                   Ferret   tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                     Panda  tgtgcag-ttttat--taa-----ccattcaagtacagtagtatctg
               Pacific walrus  tgtgcag-ctttat--taa-----ccattcaagtacagtagcatctg
                 Weddell seal  tgtgcag-ctttat--taa-----ccattcaagtacagtagcatctg
             Black flying-fox  tgtgcagtttttat--taa-----ccattcaagtacagtagcatctg
B D                   Megabat  tgtgcagtttttat--taa-----ccattcaagtacagtagcatctg
                Big brown bat  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
         David's myotis (bat)  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                  Microbat  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                  Hedgehog  tgtgcag-ttttat--taa-----ccattcaaatacagtagcatctg
B D                     Shrew  tgtgcag-ctttattataa-----ccattcaagtacagtagcatctg
              Star-nosed mole  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                  Elephant  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
          Cape elephant shrew  tgtgcag-ttttat--taa-----ccattcaagtacagtagtatctg
B D                   Manatee  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
             Cape golden mole  tgtgcag-ttttat--taa-----ccattcaagtacagtagcatctg
B D                    Tenrec  tgtgccg-ttttat--taa-----ccattcaagtacagtagcatctg
                     Aardvark  tgtgcag-ctttat--taa-----ccattcaagtacagtagcatctg
B D                 Armadillo  tgtgc-g-ttttat--taa-----ccattcaagtacagtagcatctg
B D                   Opossum  tgtgcag-ttttat--taa-----ccattcaagtacagtagtatctg
B D           Tasmanian devil  tgtgcag-ttttat--taa-----ccattcaagtacagtagtatctg
B D                   Wallaby  tttacag-ttttat--taa-----ccattcaagtacagtagtatctg
B D                  Platypus  tgtgcag-ttttat--taa-----ccattcagtttcagtagcatctg
  D               Rock pigeon  tgtgcag-ctttat--ttag----tcactcagttacagcagtatttt
  D              Saker falcon  tgtgcag-ctttat--ttag----tcactcagttacagcagtatttt
  D          Peregrine falcon  tgtgcag-ctttat--ttag----tcactcagttacagcagtatttt
  D       Collared flycatcher  tgtgcag-ctttat--tgag----tcactcggttacagcagtatttt
  D    White-throated sparrow  tgtgcag-ctttat--tgag----tcact-tgttacagcaggatttt
B D       Medium ground finch  tgtgcag-ctttat--tgag----tcac--tgttacagcaggagttt
B D               Zebra finch  tgtgcag-ctttat--tgag----tcactcggttacagcagtatttt
           Tibetan ground jay  tgtgcag-ctttat--tgag----tcactcggttacagcaggatttt
B D                Budgerigar  tgtgcag-ctttat--ttagttattcactcagttacagcagtattgt
  D                    Parrot  tgtgcag-ctttat--ttag----tcactcagttacagcagtatttg
  D             Scarlet macaw  tgtgcag-ctttat--ttag----tcactcagttacagcagtatttt
  D              Mallard duck  tgtgcag-ctttat--ttag----tcactcagttacagcagtatttt
B D                   Chicken  tgtgcag-ctttat--ttag----tcactcagttacagcagtatttt
B D                    Turkey  tgtgcag-ctttat--ttag----tcactcagttacagcagtatttt
B D        American alligator  tgtgcag-ctttat--taag----tcactcagttacagcagtatctt
  D           Green seaturtle  tgtgcag-ctttat--taag----tcactcagttacagtagtatctt
  D            Painted turtle  tgtgcag-ctttat--taag----tcagtcagttacagtagtatctt
  D  Chinese softshell turtle  tgtgcag-ctttat--taag----tcactcagttacagtagtatctt
  D    Spiny softshell turtle  tgtgcag-ctttat--taag----tcactcagttacagtagtatctt
B D                    Lizard  tgtgcag-ctttat--taag----ttacttggatacagtaatatct-
B D                Coelacanth  cgcacat-ttttat--tac----------------caggagtttccc
B D                 Zebrafish  tgtgcaa-ctttat--taa-----gc-tcaaaggatggcagtactg-
                  Spotted gar  tgtgcaa-ctttat--taa-----gc-ttaaggaacagcagttctg-
B D               Stickleback  ===============================================
          Southern platyfish  ===============================================
      Yellowbelly pufferfish  ===============================================
B D                      Fugu  ===============================================
B D                 Tetraodon  ===============================================
    Mexican tetra (cavefish)  ===============================================
B D                    Medaka  ===============================================
         Pundamilia nyererei  ===============================================
                 Zebra mbuna  ===============================================
       Burton's mouthbreeder  ===============================================
         Princess of Burundi  ===============================================
B D              Nile tilapia  ===============================================
B D            Naked mole-rat  ===============================================

Inserts between block 26 and 27 in window
B D                Zebrafish 9bp
                 Spotted gar 1bp

Alignment block 27 of 473 in window, 25900615 - 25900663, 49 bps 
B D                     Human  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D                     Chimp  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D                   Gorilla  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D                 Orangutan  gtaagattgggacaga-attggg-----------att----tgaaaa---g-tg-aac-ag------ata
B D                    Gibbon  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D                    Rhesus  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D       Crab-eating macaque  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D                    Baboon  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D              Green monkey  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D                  Marmoset  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D           Squirrel monkey  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tc-aac-ag------ata
B D                  Bushbaby  gtaagactgggacaga-agtggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
           Chinese tree shrew  gtaggatcggggcaga-actggg-----------a-t----ggaaaa---g-tg-aac-ag------ata
B D                  Squirrel  gtaagattgggacaga-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
       Lesser Egyptian jerboa  gtaggattggggcgga-atcggg-----------a-t----ggaaaa---g-tg-aac-ag------gta
                 Prairie vole  ataagattgggacaga-attggg-----------a-t----cgcaggt--g-tg-aac-ag------ata
B D           Chinese hamster  ataagattgggacaga-attggg-----------a-t----ggcaaa---g-tg-aac-ag------ata
               Golden hamster  ataagattgggacaga-attggg-----------a-t----cgcaaa---g-tg-aac-ag------ata
B D                     Mouse  gtgagattgggacaga-attggg-----------a-t----cgcaaa---g-tg-gac-ag------ata
B D                       Rat  gtgagattgggacaga-attggg-----------a-t----cgcaaa---g-tg-aac-ag------ata
B D                Guinea pig  gtaagattgggacaga-attggg-----------a-t----tg-aaa---a-tg-aacaag------ata
                   Chinchilla  gtaagattgggacaga-attggg-----------a-t----tgaaaa---a-tg-aac-ag------ata
             Brush-tailed rat  gtaagattgggacaga-attggg-----------a-t----tgaaaa---a-tg-aac-ag------ata
B D                    Rabbit  gtaagatggggacaga-attggg-----------a-t----tgaaga---g-tg-aac-ag------ata
B D                      Pika  gtaagatggggacaga-actggg-----------g-t----tgaaaa---g-tg-aac-gg------ata
B D                       Pig  gtaagattgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                    Alpaca  gtaagatcgggacagt-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
               Bactrian camel  gtaagatcgggacagt-attggg-----------a-t----tgaaaa---g-tg-aac-ag------ata
B D                   Dolphin  ttaagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
                 Killer whale  ttaagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
             Tibetan antelope  -taagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                       Cow  -taagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac---------ata
B D                     Sheep  -taagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
                Domestic goat  -taagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                     Horse  gtaagatggggacaga-actggg-----------a-t----tcaaaa---g-tg-aac-ag------ata
B D          White rhinoceros  gtaagatcgggacaga-attggg-----------a-t----tcaaaa---g-tg-aac-ag------ata
B D                       Cat  gtaagatcgggacaga-attggg-----------a-t----ttaaaa---g-ta-aac-ag------ata
B D                       Dog  gtaagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                   Ferret   gtaagattgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                     Panda  gtaagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
               Pacific walrus  gtaagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
                 Weddell seal  ggaagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
             Black flying-fox  gtaagattgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac---------ata
B D                   Megabat  gtaagattgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac---------ata
                Big brown bat  gtaagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
         David's myotis (bat)  gtaagatggggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                  Microbat  gtaagatcgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                  Hedgehog  gtaagattgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                     Shrew  gtaaaattgggacgga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
              Star-nosed mole  gtaagattgggacaga-atgggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                  Elephant  gtaaaattgggacaga-actggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
          Cape elephant shrew  gtaaaattgggacaga-actggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                   Manatee  gtaaaactgggaaaga-actggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
             Cape golden mole  gtaaaattgggacaga-actggg-----------a-t----ttaaaa---g-tg-aac-ag------atc
B D                    Tenrec  gtaaaatcgggacaga-actggg-----------a-t----ttaaaa---g-ca-aac-ag------aga
                     Aardvark  gtaaaattgggacaga-actggg-----------a-t----ttcaat---g-tg-aac-ag------ata
B D                 Armadillo  gtaaaattgggacaga-attggg-----------a-t----ttaaaa---g-tg-aac-ag------ata
B D                   Opossum  gaaagactgggacaaaggtcagg-----------t-t----tcaaaa---g-tg-aac-agacag--ata
B D           Tasmanian devil  gaaagaccgggacaaaggtcagg-----------t-t----tcaaaa---g-tg-aac-agacagatata
B D                   Wallaby  gaaagtctgggacaaaggccagg-----------t-t----tcaaaa---g-tg-aac-agacagatata
B D                  Platypus  gtaagcccaggact---gtcggg-----------t-t----ttagaatgaa-cg-aac-gg------gta
  D               Rock pigeon  agcagactgg-----------ga-----------t-t----tttgac---g-tgtaac-ag------ata
  D              Saker falcon  agcagactgggacaga-gtcaga-----------t-t----tttgaa---g-tgtaac---------ata
  D          Peregrine falcon  agcagactgggacaga-gtcaga-----------t-t----tttgaa---g-tgtaac---------ata
  D       Collared flycatcher  agcagactgg---aca-gtcaga-----gagtttt-g----tttgaa---g-tgtaac-ag------ata
  D    White-throated sparrow  agcagactgg---aca-gtcaga-----gaatttt-g----tttgaa---g-tgtaac-ag------ata
B D       Medium ground finch  agcagactgg---aca-gtcaga-----gattttt-g----tttgaa---g-tgtaac-ag------ata
B D               Zebra finch  agcagactgg---aca-gtcaga-----gattttt-g----tttgaa---g-tgtaac-ag------ata
           Tibetan ground jay  agcagactgg---aca-gtcaga-----gattttt-g----tttgaa---g-tgtaac-ag------ata
B D                Budgerigar  agcagactgggacaga-gtcaga-----------t-c----tttgaa---g-tgtaac---------ata
  D                    Parrot  agcagagtgggacaga-gtcaga-----------t-t----tctgaa---g-tgtaac---------ata
  D             Scarlet macaw  agcagactgggacaga-gtcaga-----------t-t----tttgaa---g-tgtaac---------ata
  D              Mallard duck  agaagactgggacaga-gtcagattattatttttt-t----tttgaa---g-tgtaac---------ata
B D                   Chicken  aaaagactgggac--a-gtcaga-----------t-t----tttgaa---g-tgtaac-ag------ata
B D                    Turkey  aaaagactgggac--a-gtcaga-----------t-t----tttgaa---g-tgtaac-ag------ata
B D        American alligator  ataagactgggacaga-gtcaga-------------t----tttgaa---g-tggaac-ag------ata
  D           Green seaturtle  ataagactgggac--a-gtcaga-------------t----tttgaa---g-tgtaac-ag------ata
  D            Painted turtle  ataagactgggacaga-gtcaga-------------t----tttgaa---g-tgtaac---------ata
  D  Chinese softshell turtle  ataagactgggacaaa-gtcaga-------------t----tttgaa---g-tgtaac-ag------ata
  D    Spiny softshell turtle  ataagactgggacaaa-gtcaga-------------t----tttgaa---g-tgtaac-ag------ata
B D                    Lizard  -gaagactgag---------aga-------------t----tctgaa---g-tgtaac---------aga
B D                Coelacanth  tt------------ga-actgta-----------t-t----ctgtac---a-tt-tct-ag------a-g
B D              Nile tilapia  ----------gtaaca-atggga-----------c-tgtactgcaca---g-tc-tac-aata----aca
B D                 Zebrafish  ----------ggaaca-ggtgga-----------c-t----tgcaca---a-tg-cag-tata----cca
                  Spotted gar  ----------------------------------c-t----tacaca---gata-cag-attt----cca
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D            Naked mole-rat  ======================================================================

                        Human  ttcagcat
                        Chimp  ttcagcat
                      Gorilla  ttcagcat
                    Orangutan  ttcagcat
                       Gibbon  ttcagcat
                       Rhesus  ttcagcat
          Crab-eating macaque  ttcagcat
                       Baboon  ttcagcat
                 Green monkey  ttcagcat
                     Marmoset  tttagcat
              Squirrel monkey  ttcagcat
                     Bushbaby  ttcagcat
           Chinese tree shrew  ttcagcat
                     Squirrel  ttcagcat
       Lesser Egyptian jerboa  ttcagcat
                 Prairie vole  -tcagcat
              Chinese hamster  atcagcat
               Golden hamster  ttcagcat
                        Mouse  ttcagcat
                          Rat  ctcagcat
                   Guinea pig  tttaggat
                   Chinchilla  ttcaggat
             Brush-tailed rat  ttcaggat
                       Rabbit  atcagcat
                         Pika  atcagcat
                          Pig  ttcagcat
                       Alpaca  ttcagcat
               Bactrian camel  ttcagcat
                      Dolphin  ttcagcat
                 Killer whale  ttcagcat
             Tibetan antelope  ttcagcat
                          Cow  ttcagcat
                        Sheep  ttcagcat
                Domestic goat  ttcagcat
                        Horse  ttcagcat
             White rhinoceros  ttcagcat
                          Cat  ttcagcat
                          Dog  ttcagcat
                      Ferret   ttcagcat
                        Panda  ttcagcgt
               Pacific walrus  ttcagcat
                 Weddell seal  ttcagcat
             Black flying-fox  ttcagcat
                      Megabat  ttcagcat
                Big brown bat  ttcagcat
         David's myotis (bat)  ttcagcat
                     Microbat  ttcagcat
                     Hedgehog  tttagcat
                        Shrew  ttcagcat
              Star-nosed mole  ttcagcat
                     Elephant  ttcagtat
          Cape elephant shrew  ttcagcat
                      Manatee  ttcagtat
             Cape golden mole  tttagcat
                       Tenrec  ttcagcat
                     Aardvark  ttcagtac
                    Armadillo  ttcagcat
                      Opossum  ttcagcat
              Tasmanian devil  ttcagcat
                      Wallaby  ttcagcat
                     Platypus  attcgccg
                  Rock pigeon  ttcagcat
                 Saker falcon  ttcagcat
             Peregrine falcon  ttcagcat
          Collared flycatcher  ttcagcat
       White-throated sparrow  ttgagcat
          Medium ground finch  ttcagcat
                  Zebra finch  ttcagcat
           Tibetan ground jay  ttcagcgt
                   Budgerigar  tttagcat
                       Parrot  tttagcat
                Scarlet macaw  tttagcat
                 Mallard duck  ttgagcat
                      Chicken  ttcagcat
                       Turkey  ttcagcat
           American alligator  ttcagcat
              Green seaturtle  ttcagcat
               Painted turtle  ttcagcat
     Chinese softshell turtle  cttagcat
       Spiny softshell turtle  cttagcat
                       Lizard  ttcagcat
                   Coelacanth  ttcactgt
                 Nile tilapia  tccagcat
                    Zebrafish  ---agtat
                  Spotted gar  gcttgcgc
                  Stickleback  ========
           Southern platyfish  ========
       Yellowbelly pufferfish  ========
                         Fugu  ========
                    Tetraodon  ========
     Mexican tetra (cavefish)  ========
                       Medaka  ========
          Pundamilia nyererei  ========
                  Zebra mbuna  ========
        Burton's mouthbreeder  ========
          Princess of Burundi  ========
               Naked mole-rat  ========

Inserts between block 27 and 28 in window
          Chinese tree shrew 133bp
B D                 Platypus 1bp

Alignment block 28 of 473 in window, 25900664 - 25900751, 88 bps 
B D                     Human  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D                     Chimp  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D                   Gorilla  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D                 Orangutan  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D                    Gibbon  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D                    Rhesus  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D       Crab-eating macaque  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D                    Baboon  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D              Green monkey  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D                  Marmoset  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D           Squirrel monkey  c---taac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-aat
B D                  Bushbaby  c---t-ac-ag-ttcaaaa-gaagc----cac--------------tacatactctt-tt--caca-a--
           Chinese tree shrew  c---taac-ag-ttccaaa-gaagc----cac--------------tacatactcttctt--caca-cac
B D                  Squirrel  c---taac-aa-tttgaaa-gaagc----cac--------------tacatac--tc-tt--caca-aac
       Lesser Egyptian jerboa  c---taac-ag-ttttcaatggagc----cac--------------tacgtac--tc-tttccaca-aac
                 Prairie vole  c---taac-ag-gtcggaa-gaagc----cac--------------tac--ac--tt-ct--caca-aac
B D           Chinese hamster  c---taac-ag-gttggaa-gaagc----cac--------------tacatac--tc-tt--caca-aac
               Golden hamster  c---taac-ag-gttggaa-gaagc----cac--------------tacatac--tc-tt--caca-aac
B D                     Mouse  c---taat-gg-gttggaa-gaagc----cgc--------------cacatac--tc-tt--caca-aac
B D                       Rat  c---taat-gg-gttggaa-gaagc----cac--------------tacatac--tc-tt--cacg-aac
B D                Guinea pig  c---taac-aa-tctgaaa-gaagc----cac--------------tacatactttt-tt--caca-aac
                   Chinchilla  c---taac-aa-tttgaaa-gaagc----cac--------------tacatactttt-tt--caca-aac
             Brush-tailed rat  c---taac-aa-tttgaaa-gaagc----cac--------------tacatac-ttt-tt--caca-aac
B D                    Rabbit  c---taac-gg-ttcggaa-ggagc----cac--------------tacatactctt-tt--caca-aac
B D                      Pika  c---taac-ag-tt-ggga-ggggc----cac--------------tacatactctt-tt--caca-aac
B D                       Pig  c---taac-aa-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                    Alpaca  c---taac-ag-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
               Bactrian camel  c---taac-ag-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                   Dolphin  c---taac-ag-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
                 Killer whale  c---taac-ag-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
             Tibetan antelope  c---taac-aa-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-gac
B D                       Cow  c---taac-aa-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-gac
B D                     Sheep  c---taac-aa-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-gac
                Domestic goat  c---taac-aa-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-gac
B D                     Horse  c---taac-ag-tttgaaa-gtagc----cac--------------tacatactctt-tt--caca-aac
B D          White rhinoceros  c---taac-ag-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                       Cat  c---taac-ag-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                       Dog  c---taac-ag-tttggaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                   Ferret   c---taac-aa-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                     Panda  c---taac-ag-tttgaaa-gaagc----cac--------------tacatactctt-tc--caca-aac
               Pacific walrus  c---taac-ag-tttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
                 Weddell seal  c---taac-ag-tttgaaa-gaagc----cac--------------tacatactctt-tg--caca-aac
             Black flying-fox  c---taat-aa-tttgaaa-gaagc----cac--------------tacatattc---tt--caca-gac
B D                   Megabat  c---taat-aa-tttgaaa-gaagc----cac--------------tacatattc---tt--caca-gac
                Big brown bat  c---taac-aa-tttaaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
         David's myotis (bat)  c---taac-aa-tttaaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                  Microbat  c---taac-aa-tttaaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                  Hedgehog  c---taac-ag-tttgaaa-gaagt----cac--------------tacatactc---tt--caca-aac
B D                     Shrew  ctaataac-ag-tttgaaa-gaagc----cac--------------tacatactc---tt--caca-aac
              Star-nosed mole  c---taac-ag-tttgaga-gaagc----cac--------------tacatactc---tt--ttcacaac
B D                  Elephant  c---taac-ggttttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
          Cape elephant shrew  c---taacaagttttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                   Manatee  c---taac-ggttttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
             Cape golden mole  c---ta---agttttaaaa-gaagc----cac--------------tacatattc---tt--caca-aac
B D                    Tenrec  c---taac-agttttgaga-gaagc----cac--------------tacacactc-t-tt--cacg-aac
                     Aardvark  c---taac-aattttgaaa-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                 Armadillo  c---taac-ag-tttgaga-gaagc----cac--------------tacatactctt-tt--caca-aac
B D                   Opossum  c---taac-ag-ttggaaa-gaagcata-tac--------------tacagattcct-tt--caca-aac
B D           Tasmanian devil  c---taac-ag-ttggaaa-gaagc--a-tac--------------tacagattcct-tt--caca-aac
B D                   Wallaby  c---tgac-ac-ttggaaa-gaagg--g-tac--------------tacagattcct-tt--caca-aac
B D                  Platypus  c---tccc-ag-tttgaac-gaagc--g-ttc--------------tacagattctt-tt--caca-gac
  D               Rock pigeon  ----------------gga-acagc--g-tac--------------cacatattcct-tt--caca-a--
  D              Saker falcon  ----------------gga-acagt--a-tac--------------tacgtattcct-tt--caca-aa-
  D          Peregrine falcon  ----------------gga-acagt--a-tac--------------tacgtattcct-tt--caca-aa-
  D       Collared flycatcher  ----------------gga-acagt----tat--------------tacagattcct-tg--cacg-aa-
  D    White-throated sparrow  ----------------gga-acagt----tac--------------cagagattcct-tg--caca-aa-
B D       Medium ground finch  ----------------gga-acagt----tac--------------cagagattcct-tg--caca-aa-
B D               Zebra finch  ----------------gga-acagt----tac--------------tacagattcct-tg--caca-aa-
           Tibetan ground jay  ----------------gga-acagt----tac--------------tacagattcct-tg--caca-aa-
B D                Budgerigar  ----------------gga-acagtgta-ttt--------------tacttattcct-tt--caca-aa-
  D                    Parrot  ----------------gga-acagtata-ttt--------------tacttactcct-tt--caca-aa-
  D             Scarlet macaw  ----------------gga-acagtata-ttt--------------tacttactcct-tt--caca-aa-
  D              Mallard duck  ----------------gga-acagt--t-tac--------------tacatattcct-tt--caca-aa-
B D                   Chicken  ----------------gga-acagt--a-tac--------------tacatattcct-tt--caca-aa-
B D                    Turkey  ----------------gga-acagt--a-tac--------------tacatattcct-tt--caca-aa-
B D        American alligator  ----------------gga-acagt--attcc--------------tacatattcct-tt--caca-aac
  D           Green seaturtle  ----------------gga-atagt--a-tac--------------tacatattcct-tt--caca-aac
  D            Painted turtle  ----------------gga-atagt--a-tac--------------tacatattcct-tt--caca-aac
  D  Chinese softshell turtle  ----------------gga-attgt----tac--------------tacatattcct-tt--caca-aac
  D    Spiny softshell turtle  ----------------gga-attgt----tac--------------tacatattcct-tt--caca-aac
B D                    Lizard  -----------------ga-acttt--a-cac--------------tacatattccg-tt--caca-aa-
B D                Coelacanth  ---gtaac-ag-cattaaa-agacc---------------------------------tt--caca-aat
B D              Nile tilapia  ----------------------------------------------taccaacagtt-ta--caac-agc
B D                 Zebrafish  --------------------------------------atatt--agacctatgcat-aa--caca-ggc
                  Spotted gar  -----------------------------tatgcaacaatgttaaagacccaagtgt-aa--taga-gac
B D               Stickleback  ======================================================================
          Southern platyfish  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                 Tetraodon  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D                    Medaka  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
         Princess of Burundi  ======================================================================
B D            Naked mole-rat  ======================================================================

                        Human  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                        Chimp  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                      Gorilla  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                    Orangutan  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                       Gibbon  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                       Rhesus  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
          Crab-eating macaque  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                       Baboon  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                 Green monkey  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                     Marmoset  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
              Squirrel monkey  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                     Bushbaby  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
           Chinese tree shrew  g----------ggat-----tt--------ca----------cagagcca-atac-agtactagcca---
                     Squirrel  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
       Lesser Egyptian jerboa  g----------t--t-----tt--------ca----------cagagcca-atac-agtactagcca---
                 Prairie vole  a----------t-ct-----tc--------ca----------cagaagca-atac-agtactagcca---
              Chinese hamster  g----------t-ct-----tc--------ca----------cagagtca-atac-agtactagcca---
               Golden hamster  g----------t-ct-----tc--------ca----------cagagtca-gtac-agtactagcca---
                        Mouse  a----------t-ct-----tc--------ca----------cag--tca-atac-agaactagcca---
                          Rat  g----------t-ct-----tc--------ca----------cag--tca-atac-agcactagcca---
                   Guinea pig  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                   Chinchilla  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
             Brush-tailed rat  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                       Rabbit  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                         Pika  a---------ttttt-----tt--------ca----------cagggcca-atac-agtactagcca---
                          Pig  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                       Alpaca  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
               Bactrian camel  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                      Dolphin  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                 Killer whale  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
             Tibetan antelope  a----------tgtt-----tt--------ca----------cggagcca-atac-agtactagcca---
                          Cow  a----------tgtt-----tc--------ca----------cggagcca-atac-agtactagcca---
                        Sheep  a----------tgtt-----tt--------ca----------cggagcca-atac-agtactagcca---
                Domestic goat  a----------tgtt-----tt--------ca----------cggagcca-atac-agtactagcca---
                        Horse  a----------tgtt-----tt--------ca----------cggagcca-atac-agtactagcca---
             White rhinoceros  a----------tgtt-----tt--------ca----------cggagcca-atac-agtactagcca---
                          Cat  a----------ggtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                          Dog  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                      Ferret   a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagccg---
                        Panda  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagccg---
               Pacific walrus  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagccg---
                 Weddell seal  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagctg---
             Black flying-fox  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                      Megabat  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                Big brown bat  a----------tgtt-----tt--------ca----------cagagcca-aaac-agtactagcca---
         David's myotis (bat)  a----------tgtt-----tt--------ca----------cagagcca-aaac-agtactagcca---
                     Microbat  a----------tgtt-----tt--------ca----------cagagcca-aaac-agtactagcca---
                     Hedgehog  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                        Shrew  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
              Star-nosed mole  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
                     Elephant  a----------tgtt-----tc--------ca----------cggagcca-atac-ggtactagcca---
          Cape elephant shrew  a----------tgtt-----tc--------ca----------cagagcca-atac-agtactagcca---
                      Manatee  a----------tgtt-----tc--------ca----------cagagcca-atac-agtactagcca---
             Cape golden mole  a----------tgtt-----tc--------ca----------cagagcca-atac-agtactagcca---
                       Tenrec  a----------tgtt-----tc--------ca----------cggggcca-atac-ggtactagcca---
                     Aardvark  a----------tgtt-----tc--------ca----------cagagcca-atac-agtactagcca---
                    Armadillo  a----------tatt-----tt--------ca----------cagagcca-atac-agtactagcca---
                      Opossum  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---
              Tasmanian devil  a----------tgtt-----tt--------ca----------cagagcca-atac-agtactagcca---