Multiz Alignments of 100 Vertebrates
 

Capitalize exons based on show bases
Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 688 in window, 87726059 - 87726069, 11 bps 
B D                     Human  ggcggtgccg-g
B D                     Chimp  ggcggtgccg-g
B D                   Gorilla  ggcggtgccg-g
B D                 Orangutan  ggcggtgccg-g
B D                    Gibbon  ggcggtgccg-g
B D                    Rhesus  ggcggtgccg-g
B D       Crab-eating macaque  ggcggtgccg-g
B D                    Baboon  ggcggtgccg-g
B D              Green monkey  ggcggtgccc-g
B D                  Marmoset  gacggtgcca-g
B D           Squirrel monkey  ggcggtgccg-g
B D                  Bushbaby  ggcggggccg-g
B D                  Squirrel  ggtgggggcg-g
                 Prairie vole  ggcagggac--a
               Golden hamster  ggaggggaca-a
B D                    Rabbit  ggcggggcct-a
B D                   Dolphin  ggcggggccg-g
                 Killer whale  ggcggggccg-g
             Tibetan antelope  ggcggggcct-g
B D                       Cow  ggcggggctt-g
                Domestic goat  ggcggggcct-g
B D          White rhinoceros  ggcggggccg-g
B D                       Cat  cactgggc-g-a
B D                       Dog  ggcagggctg-g
B D                   Ferret   ggcggggctg-a
B D                     Panda  ggcagcgc---c
                 Weddell seal  ggtagggctggc
             Black flying-fox  ggaggggcgg-c
                Big brown bat  ggcggg---g-a
B D                  Microbat  ggcggggctg-c
B D                  Elephant  agcggggcag-g
B D                   Manatee  agtagggggg-g
B D                    Tenrec  ggcggtgctg-a
                     Aardvark  ggtggtgccc-g
B D                     Mouse  ============
B D                      Pika  ============
B D                Coelacanth  ============
B D              Atlantic cod  ============
            Cape golden mole  ============
B D                       Pig  ============
B D                   Megabat  ============
                 Spotted gar  ============
B D               Stickleback  ============
          Southern platyfish  ============
      Yellowbelly pufferfish  ============
B D                      Fugu  ============
B D                 Tetraodon  ============
B D                   Chicken  ============
  D              Mallard duck  ============
          Tibetan ground jay  ============
B D               Zebra finch  ============
  D    White-throated sparrow  ============
    Mexican tetra (cavefish)  ============
B D                 Zebrafish  ============
B D                    Medaka  ============
         Pundamilia nyererei  ============
                 Zebra mbuna  ============
       Burton's mouthbreeder  ============
         Princess of Burundi  ============
B D              Nile tilapia  ============
  D            Painted turtle  ============
B D                Budgerigar  ============
B D                   Opossum  ============
B D            Naked mole-rat  ============
  D               Rock pigeon  ============
B D       Medium ground finch  ============
B D                    Lizard  ============
  D          Peregrine falcon  ============
  D              Saker falcon  ============
          Chinese tree shrew  ------------
  D           Green seaturtle  ============
  D  Chinese softshell turtle  ============
B D                     Sheep  ============
  D       Collared flycatcher  ============
              Bactrian camel  ============
B D                    Alpaca  ============
              Pacific walrus  ============
B D                     Horse  ============
        David's myotis (bat)  ------------
B D                 Armadillo  ============

Alignment block 2 of 688 in window, 87726070 - 87726072, 3 bps 
B D                     Human  -ccg
B D                     Chimp  -ccg
B D                   Gorilla  -ccg
B D                 Orangutan  -ccg
B D                    Gibbon  -tcg
B D                    Rhesus  -cgg
B D       Crab-eating macaque  -cgg
B D                    Baboon  -cgg
B D              Green monkey  -ccg
B D                  Marmoset  -ctg
B D           Squirrel monkey  -ccg
B D                  Bushbaby  -cc-
           Chinese tree shrew  -ctg
B D                  Squirrel  -cct
                 Prairie vole  -ctg
               Golden hamster  -ctg
B D                    Rabbit  -tcc
B D                   Dolphin  -ccg
                 Killer whale  -ccg
             Tibetan antelope  -ccg
B D                       Cow  -ccg
                Domestic goat  -ccg
B D          White rhinoceros  -gcg
B D                       Cat  -tcc
B D                       Dog  -cag
B D                   Ferret   -ccc
B D                     Panda  -ctc
                 Weddell seal  -cct
             Black flying-fox  -cga
                Big brown bat  -cgg
B D                  Microbat  -cgg
B D                  Elephant  cct-
B D                   Manatee  cct-
B D                    Tenrec  acg-
                     Aardvark  act-
B D                     Mouse  ====
B D                      Pika  ====
B D                Coelacanth  ====
B D              Atlantic cod  ====
            Cape golden mole  ====
B D                       Pig  ====
B D                   Megabat  ====
                 Spotted gar  ====
B D               Stickleback  ====
          Southern platyfish  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
B D                 Tetraodon  ====
B D                   Chicken  ====
  D              Mallard duck  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
  D    White-throated sparrow  ====
    Mexican tetra (cavefish)  ====
B D                 Zebrafish  ====
B D                    Medaka  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
  D            Painted turtle  ====
B D                Budgerigar  ====
B D                   Opossum  ====
B D            Naked mole-rat  ====
  D               Rock pigeon  ====
B D       Medium ground finch  ====
B D                    Lizard  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
  D           Green seaturtle  ====
  D  Chinese softshell turtle  ====
B D                     Sheep  ====
  D       Collared flycatcher  ====
              Bactrian camel  ====
B D                    Alpaca  ====
              Pacific walrus  ====
B D                     Horse  ====
        David's myotis (bat)  ----
B D                 Armadillo  ====

Alignment block 3 of 688 in window, 87726073 - 87726080, 8 bps 
B D                     Human  a-------a--cccaga
B D                     Chimp  a-------a--cccaga
B D                   Gorilla  a-------a--cccaga
B D                 Orangutan  a-------g--cccaga
B D                    Gibbon  a-------g--cccaga
B D                    Rhesus  a-------g--cccaga
B D       Crab-eating macaque  a-------g--cccaga
B D                    Baboon  a-------g--cccaga
B D              Green monkey  a-------g--cccaga
B D                  Marmoset  a-------g--cccaga
B D           Squirrel monkey  a-------g--cccaaa
B D                  Bushbaby  ----------------a
           Chinese tree shrew  g-------a--ttcaga
B D                  Squirrel  c-------t--agcaga
                 Prairie vole  tcctggagc--cacaga
               Golden hamster  t-------c--tacata
B D                    Rabbit  c------ac--ctcaga
B D                       Pig  -------gc--cgcaa-
B D                   Dolphin  -------ag--cggaat
                 Killer whale  -------ag--cggaat
             Tibetan antelope  -------gg--cgcagt
B D                       Cow  -------ag--cgcagt
                Domestic goat  -------ag--cgcagt
B D          White rhinoceros  -------ag--ccaaat
B D                       Cat  -------gg--cggaat
B D                       Dog  -------gg--ccaaat
B D                   Ferret   -------gg--cccgat
B D                     Panda  -------ggggccaaat
                 Weddell seal  -------gg----aaaa
             Black flying-fox  -------aa--cc----
                Big brown bat  -------gg--cggttg
B D                  Microbat  -------gc--cgaaag
B D                  Elephant  -------gg--ctgcaa
B D                   Manatee  -------gg--ctgcaa
B D                    Tenrec  -------gg--ctgcga
                     Aardvark  -------gg--ctgtaa
B D                     Mouse  =================
B D                      Pika  =================
B D                Coelacanth  =================
B D              Atlantic cod  =================
            Cape golden mole  =================
B D                   Megabat  =================
                 Spotted gar  =================
B D               Stickleback  =================
          Southern platyfish  =================
      Yellowbelly pufferfish  =================
B D                      Fugu  =================
B D                 Tetraodon  =================
B D                   Chicken  =================
  D              Mallard duck  =================
          Tibetan ground jay  =================
B D               Zebra finch  =================
  D    White-throated sparrow  =================
    Mexican tetra (cavefish)  =================
B D                 Zebrafish  =================
B D                    Medaka  =================
         Pundamilia nyererei  =================
                 Zebra mbuna  =================
       Burton's mouthbreeder  =================
         Princess of Burundi  =================
B D              Nile tilapia  =================
  D            Painted turtle  =================
B D                Budgerigar  =================
B D                   Opossum  =================
B D            Naked mole-rat  =================
  D               Rock pigeon  =================
B D       Medium ground finch  =================
B D                    Lizard  =================
  D          Peregrine falcon  =================
  D              Saker falcon  =================
  D           Green seaturtle  =================
  D  Chinese softshell turtle  =================
B D                     Sheep  =================
  D       Collared flycatcher  =================
              Bactrian camel  =================
B D                    Alpaca  =================
              Pacific walrus  =================
B D                     Horse  =================
        David's myotis (bat)  -----------------
B D                 Armadillo  =================

Inserts between block 3 and 4 in window
B D                      Pig 64bp

Alignment block 4 of 688 in window, 87726081 - 87726082, 2 bps 
B D                     Human  cc
B D                     Chimp  cc
B D                   Gorilla  cc
B D                 Orangutan  cc
B D                    Gibbon  cc
B D                    Rhesus  cc
B D       Crab-eating macaque  cc
B D                    Baboon  cc
B D              Green monkey  cc
B D                  Marmoset  tc
B D           Squirrel monkey  tc
B D                  Bushbaby  tc
           Chinese tree shrew  tt
B D                  Squirrel  ct
                 Prairie vole  tt
               Golden hamster  ct
B D                    Rabbit  tc
B D                   Dolphin  cc
                 Killer whale  cc
             Tibetan antelope  cc
B D                       Cow  cc
                Domestic goat  cc
B D          White rhinoceros  -c
B D                       Cat  -c
B D                       Dog  -c
B D                   Ferret   -c
B D                     Panda  -c
                 Weddell seal  -a
                Big brown bat  -c
B D                  Microbat  -c
B D                  Elephant  cc
B D                   Manatee  ct
B D                    Tenrec  cc
                     Aardvark  ac
B D                     Mouse  ==
B D                      Pika  ==
B D                Coelacanth  ==
B D              Atlantic cod  ==
            Cape golden mole  ==
B D                       Pig  ==
B D                   Megabat  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D           Green seaturtle  ==
  D  Chinese softshell turtle  ==
B D                     Sheep  ==
  D       Collared flycatcher  ==
              Bactrian camel  ==
B D                    Alpaca  ==
              Pacific walrus  ==
            Black flying-fox  --
B D                     Horse  ==
        David's myotis (bat)  --
B D                 Armadillo  ==

Inserts between block 4 and 5 in window
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
                Weddell seal 1bp
               Big brown bat 1bp
B D                 Microbat 1bp

Alignment block 5 of 688 in window, 87726083 - 87726108, 26 bps 
B D                     Human  cgaggttttagaa---gc--------a-gagtca--ggcg
B D                     Chimp  cgaggttttagaa---gc--------a-gagtca--ggcg
B D                   Gorilla  cgaggttttagaa---gc--------a-gagtca--ggcg
B D                 Orangutan  cgaggttttagag---gc--------a-gggtca--ggcg
B D                    Gibbon  cgaggttttagag---gc--------a-gagtca--ggcg
B D                    Rhesus  cgaggttttagag---gc--------a-gagtcg--ggcg
B D       Crab-eating macaque  cgaggttttagag---gc--------a-gagtcg--ggcg
B D                    Baboon  cgaggttttagag---gc--------a-gagtca--ggcg
B D              Green monkey  cgaggttttagag---gc--------a-gagtca--ggcg
B D                  Marmoset  cgatgtttcagag---gc--------a-gagtca--ggcg
B D           Squirrel monkey  cgatgtttcagag---gc--------a-gagtcg--ggcg
B D                  Bushbaby  aagggccttaaag---ct--------c-aagtta--ggcg
           Chinese tree shrew  tggggctttaaag---cc--------t-gaggca--ggtt
B D                  Squirrel  gatggctttaaag---ct--------tgagtcca--ggtg
                 Prairie vole  tg-ggatttaaag---cc--------tggatcca--tgcg
               Golden hamster  tg-ggatttaaag---cc--------t-gagcga--ggtg
B D                    Rabbit  tt-ggccttaaag---tc--------c-gagtca--gcca
B D                   Dolphin  cggagccttaaat---gg--------g-aggacat-----
                 Killer whale  cggagccttaaat---gg--------g-aggacat-----
             Tibetan antelope  cggagccttaaat---gg--------g-aggtcttg----
B D                       Cow  cggagccttaaat---gg--------g-aggtcttg----
                Domestic goat  cggagccttaaat---gg--------g-aggtcttg----
B D          White rhinoceros  cggggcttttaat---ca--------g-cggcct------
B D                       Cat  tggg-ccttaaac---cg--------a-cagcct------
B D                       Dog  tagg--cttaaat---gg--------g-cagcct------
B D                   Ferret   cggc--cctaaaa---gc--------t-tggctt------
B D                     Panda  cagg--cttaaat---gg--------g-cagcct------
                 Weddell seal  cagggccttccat---gc--------a-aagcct------
             Black flying-fox  cagggccttaaa----ggctgagtcag-gggcaa------
                Big brown bat  cgggaccttaaat---gg--------g-cggccc------
         David's myotis (bat)  aggatccttaaat---gg--------g-tggcct------
B D                  Microbat  cggggccttaaaa---ggctgagtcag-gggcga------
B D                  Elephant  gtgagctttaaat---gc--------t-gagcag--gtg-
B D                   Manatee  -cgagctttaaat---gc--------t-gagcgg--gtg-
B D                    Tenrec  ccgagctttaaacccggc--------t-gagccc--agg-
                     Aardvark  ccgggcttttaat---ac--------t-tagcag--gta-
B D                     Mouse  ========================================
B D                      Pika  ========================================
B D                Coelacanth  ========================================
B D              Atlantic cod  ========================================
            Cape golden mole  ========================================
B D                       Pig  ========================================
B D                   Megabat  ========================================
                 Spotted gar  ========================================
B D               Stickleback  ========================================
          Southern platyfish  ========================================
      Yellowbelly pufferfish  ========================================
B D                      Fugu  ========================================
B D                 Tetraodon  ========================================
B D                   Chicken  ========================================
  D              Mallard duck  ========================================
          Tibetan ground jay  ========================================
B D               Zebra finch  ========================================
  D    White-throated sparrow  ========================================
    Mexican tetra (cavefish)  ========================================
B D                 Zebrafish  ========================================
B D                    Medaka  ========================================
         Pundamilia nyererei  ========================================
                 Zebra mbuna  ========================================
       Burton's mouthbreeder  ========================================
         Princess of Burundi  ========================================
B D              Nile tilapia  ========================================
  D            Painted turtle  ========================================
B D                Budgerigar  ========================================
B D                   Opossum  ========================================
B D            Naked mole-rat  ========================================
  D               Rock pigeon  ========================================
B D       Medium ground finch  ========================================
B D                    Lizard  ========================================
  D          Peregrine falcon  ========================================
  D              Saker falcon  ========================================
  D           Green seaturtle  ========================================
  D  Chinese softshell turtle  ========================================
B D                     Sheep  ========================================
  D       Collared flycatcher  ========================================
              Bactrian camel  ========================================
B D                    Alpaca  ========================================
              Pacific walrus  ========================================
B D                     Horse  ========================================
B D                 Armadillo  ========================================

Alignment block 6 of 688 in window, 87726109 - 87726109, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                  Bushbaby  a
           Chinese tree shrew  c
B D                  Squirrel  t
                 Prairie vole  c
               Golden hamster  t
B D                    Rabbit  g
B D                  Elephant  g
B D                   Manatee  g
B D                    Tenrec  g
                     Aardvark  g
B D                     Mouse  =
B D                      Pika  =
B D                Coelacanth  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
B D                   Megabat  =
B D                   Dolphin  -
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  -
                Weddell seal  -
  D  Chinese softshell turtle  =
B D                   Ferret   -
               Domestic goat  -
B D                     Sheep  =
            Tibetan antelope  -
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
               Big brown bat  -
              Pacific walrus  =
B D                     Panda  -
B D                       Cow  -
                Killer whale  -
B D                       Dog  -
            Black flying-fox  -
B D          White rhinoceros  -
B D                     Horse  =
        David's myotis (bat)  -
B D                  Microbat  -
B D                 Armadillo  =

Alignment block 7 of 688 in window, 87726110 - 87726122, 13 bps 
B D                     Human  agctgggccaga-a
B D                     Chimp  agctgggccaga-a
B D                   Gorilla  agctgggccaga-a
B D                 Orangutan  agctgggccaga-a
B D                    Gibbon  agctgggccaga-a
B D                    Rhesus  agctgggccaga-a
B D       Crab-eating macaque  agctgggctaga-a
B D                    Baboon  agctgggccaga-a
B D              Green monkey  agctgggccaga-a
B D                  Marmoset  aactgggccaga-a
B D           Squirrel monkey  aactgggccaga-a
B D                  Bushbaby  cgctgcgccaga-a
           Chinese tree shrew  agttgggccaga-t
B D                  Squirrel  tgcaaaaccaga-t
                 Prairie vole  agttgggacaga-g
               Golden hamster  tgctgggtcaga-t
B D                    Rabbit  gatggggccag---
B D                   Dolphin  ---gcgcccaca--
                 Killer whale  ---gcgcccaca--
             Tibetan antelope  ---gtgcccaca--
B D                       Cow  ---gtgcccaca--
                Domestic goat  ---gtgcccaca--
B D          White rhinoceros  --cacggccgga--
B D                       Cat  --tggacccact--
B D                       Dog  --cccacccacc--
B D                   Ferret   --cacccca-ct--
B D                     Panda  --cccatccatc--
                 Weddell seal  --gggaccc-tc--
             Black flying-fox  --ctgggccagaa-
                Big brown bat  --agaggccccag-
         David's myotis (bat)  --tggggccacaa-
B D                  Microbat  --ttgggccagaa-
B D                  Elephant  tcttggatcatg-a
B D                   Manatee  tcccggaccaca-a
B D                    Tenrec  cctcagcttaca-a
                     Aardvark  tcccggaccaca-a
B D                     Mouse  ==============
B D                      Pika  ==============
B D                Coelacanth  ==============
B D              Atlantic cod  ==============
            Cape golden mole  ==============
B D                       Pig  ==============
B D                   Megabat  ==============
                 Spotted gar  ==============
B D               Stickleback  ==============
          Southern platyfish  ==============
      Yellowbelly pufferfish  ==============
B D                      Fugu  ==============
B D                 Tetraodon  ==============
B D                   Chicken  ==============
  D              Mallard duck  ==============
          Tibetan ground jay  ==============
B D               Zebra finch  ==============
  D    White-throated sparrow  ==============
    Mexican tetra (cavefish)  ==============
B D                 Zebrafish  ==============
B D                    Medaka  ==============
         Pundamilia nyererei  ==============
                 Zebra mbuna  ==============
       Burton's mouthbreeder  ==============
         Princess of Burundi  ==============
B D              Nile tilapia  ==============
  D            Painted turtle  ==============
B D                Budgerigar  ==============
B D                   Opossum  ==============
B D            Naked mole-rat  ==============
  D               Rock pigeon  ==============
B D       Medium ground finch  ==============
B D                    Lizard  ==============
  D          Peregrine falcon  ==============
  D              Saker falcon  ==============
  D           Green seaturtle  ==============
  D  Chinese softshell turtle  ==============
B D                     Sheep  ==============
  D       Collared flycatcher  ==============
              Bactrian camel  ==============
B D                    Alpaca  ==============
              Pacific walrus  ==============
B D                     Horse  ==============
B D                 Armadillo  ==============

Inserts between block 7 and 8 in window
B D                   Rhesus 9bp
B D      Crab-eating macaque 9bp
          Chinese tree shrew 2bp
B D                 Squirrel 10bp
                Prairie vole 10bp
              Golden hamster 10bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
               Domestic goat 1bp

Alignment block 8 of 688 in window, 87726123 - 87726123, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  c
B D                  Squirrel  t
                 Prairie vole  c
               Golden hamster  c
B D          White rhinoceros  g
B D                       Cat  t
B D                       Dog  a
B D                   Ferret   g
B D                     Panda  c
                 Weddell seal  c
             Black flying-fox  c
B D                   Megabat  c
                Big brown bat  c
         David's myotis (bat)  c
B D                  Microbat  c
B D                  Elephant  c
B D                   Manatee  c
                     Aardvark  c
B D                     Mouse  =
B D                      Pika  =
B D                    Rabbit  -
B D                Coelacanth  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
B D                   Dolphin  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
B D                    Tenrec  -
  D           Green seaturtle  =
  D  Chinese softshell turtle  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
              Pacific walrus  =
B D                       Cow  =
                Killer whale  =
B D                     Horse  =
B D                 Armadillo  =

Inserts between block 8 and 9 in window
            Black flying-fox 2bp
B D                  Megabat 5bp

Alignment block 9 of 688 in window, 87726124 - 87726129, 6 bps 
B D                     Human  cgc-gac-----
B D                     Chimp  cgc-gat-----
B D                   Gorilla  cgc-gac-----
B D                 Orangutan  cgc-gat-----
B D                    Gibbon  cgc-gac-----
B D                    Rhesus  cgc-gac-----
B D       Crab-eating macaque  cgc-gac-----
B D                    Baboon  cgc-gac-----
B D              Green monkey  cgc-gac-----
B D                  Marmoset  cgc-gac-----
B D           Squirrel monkey  cgc-gac-----
B D                  Bushbaby  cgcggac-----
           Chinese tree shrew  agc-cac-----
B D                  Squirrel  ggt-gac-----
                 Prairie vole  agc-aac-----
               Golden hamster  cgc-aag-----
B D                    Rabbit  ----gac-----
B D                   Dolphin  ccc-aat-----
                 Killer whale  ccc-aat-----
             Tibetan antelope  ccc-aac-----
B D                       Cow  ccc-aac-----
                Domestic goat  ccc-aac-----
B D          White rhinoceros  cca-gac-----
B D                       Cat  cgc-gac-----
B D                       Dog  cca-ggc-----
B D                   Ferret   ccg-ggc-----
B D                     Panda  cca-ggc-----
                 Weddell seal  ccc-aac-----
             Black flying-fox  cca-g-------
                Big brown bat  cta-g-------
         David's myotis (bat)  caa-g-------
B D                  Microbat  tac-g-------
B D                  Elephant  ----tgctt-ac
B D                   Manatee  ----cgctt-ac
B D                    Tenrec  -----gcttggg
                     Aardvark  ----agcag-ac
B D                     Mouse  ============
B D                      Pika  ============
B D                Coelacanth  ============
B D              Atlantic cod  ============
            Cape golden mole  ============
B D                       Pig  ============
B D                   Megabat  ============
                 Spotted gar  ============
B D               Stickleback  ============
          Southern platyfish  ============
      Yellowbelly pufferfish  ============
B D                      Fugu  ============
B D                 Tetraodon  ============
B D                   Chicken  ============
  D              Mallard duck  ============
          Tibetan ground jay  ============
B D               Zebra finch  ============
  D    White-throated sparrow  ============
    Mexican tetra (cavefish)  ============
B D                 Zebrafish  ============
B D                    Medaka  ============
         Pundamilia nyererei  ============
                 Zebra mbuna  ============
       Burton's mouthbreeder  ============
         Princess of Burundi  ============
B D              Nile tilapia  ============
  D            Painted turtle  ============
B D                Budgerigar  ============
B D                   Opossum  ============
B D            Naked mole-rat  ============
  D               Rock pigeon  ============
B D       Medium ground finch  ============
B D                    Lizard  ============
  D          Peregrine falcon  ============
  D              Saker falcon  ============
  D           Green seaturtle  ============
  D  Chinese softshell turtle  ============
B D                     Sheep  ============
  D       Collared flycatcher  ============
              Bactrian camel  ============
B D                    Alpaca  ============
              Pacific walrus  ============
B D                     Horse  ============
B D                 Armadillo  ============

Inserts between block 9 and 10 in window
            Black flying-fox 1bp
               Big brown bat 3bp
        David's myotis (bat) 3bp
B D                 Microbat 3bp

Alignment block 10 of 688 in window, 87726130 - 87726131, 2 bps 
B D                     Human  ct
B D                     Chimp  ct
B D                   Gorilla  ct
B D                 Orangutan  ct
B D                    Gibbon  ct
B D                    Rhesus  ct
B D       Crab-eating macaque  ct
B D                    Baboon  ct
B D              Green monkey  ct
B D                  Marmoset  ct
B D           Squirrel monkey  ct
B D                  Bushbaby  ct
           Chinese tree shrew  ct
B D                  Squirrel  ct
                 Prairie vole  ct
               Golden hamster  tt
B D                    Rabbit  ct
B D                   Dolphin  ct
                 Killer whale  ct
             Tibetan antelope  tt
B D                       Cow  tt
                Domestic goat  tt
B D          White rhinoceros  cg
B D                       Cat  cc
B D                       Dog  ct
B D                   Ferret   ct
B D                     Panda  ct
                 Weddell seal  ct
             Black flying-fox  ct
B D                   Megabat  ct
                Big brown bat  cg
         David's myotis (bat)  ca
B D                  Microbat  cg
B D                  Elephant  ct
B D                   Manatee  ct
B D                    Tenrec  cg
                     Aardvark  ct
B D                     Mouse  ==
B D                      Pika  ==
B D                Coelacanth  ==
B D              Atlantic cod  ==
            Cape golden mole  ==
B D                       Pig  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D           Green seaturtle  ==
  D  Chinese softshell turtle  ==
B D                     Sheep  ==
  D       Collared flycatcher  ==
              Bactrian camel  ==
B D                    Alpaca  ==
              Pacific walrus  ==
B D                     Horse  ==
B D                 Armadillo  ==

Inserts between block 10 and 11 in window
B D                  Dolphin 6bp
                Killer whale 6bp
            Tibetan antelope 6bp
B D                      Cow 6bp
               Domestic goat 6bp
B D         White rhinoceros 6bp
B D                      Cat 6bp
B D                      Dog 8bp
B D                  Ferret  7bp
B D                    Panda 8bp
                Weddell seal 6bp
            Black flying-fox 3bp
B D                  Megabat 57bp
               Big brown bat 4bp
        David's myotis (bat) 4bp
B D                 Microbat 5bp

Alignment block 11 of 688 in window, 87726132 - 87726143, 12 bps 
B D                     Human  ccgcaac--ctt--ga
B D                     Chimp  ccgcaac--ctt--ga
B D                   Gorilla  ccgcaac--ctt--ga
B D                 Orangutan  ccgcaac--ctt--ga
B D                    Gibbon  ccgcaac--ctt--ga
B D                    Rhesus  ccgcaac--ctcaaga
B D       Crab-eating macaque  ccgcaac--ctcaaga
B D                    Baboon  ccgcaac--ctcaaga
B D              Green monkey  ccgcaac--cacaaga
B D                  Marmoset  ccgcaac--ctgaaga
B D           Squirrel monkey  ccgcaac--ctgaaga
B D                  Bushbaby  cagcaac--ctg--ga
           Chinese tree shrew  ccgaa---------ga
B D                  Squirrel  ttgagga--tccaaga
                 Prairie vole  cggaaga--cctgaga
B D                    Rabbit  ctgaggg--cc-----
B D                   Dolphin  ------c--ccctgga
                 Killer whale  ------c--ccctgga
             Tibetan antelope  ------c--ccgggga
B D                       Cow  ------c--cccggga
                Domestic goat  ------c--cccggga
B D          White rhinoceros  ------c--tcgcggg
B D                       Cat  ------c--ccccagc
B D                       Dog  ------c--cccctga
B D                   Ferret   ------c--tca-gga
B D                     Panda  ------c--tcgctga
                 Weddell seal  ------c--ccctaga
             Black flying-fox  ------cgatcttaga
                Big brown bat  ------t--tcctgga
         David's myotis (bat)  ------c--ccctgga
B D                  Microbat  ------c--ctttcga
B D                  Elephant  ccgtgag--cgcgata
B D                   Manatee  cagtgac--ctc-ata
B D                    Tenrec  ccgggac--ccc-gta
                     Aardvark  cagtgac--cccagcc
              Golden hamster  ----------------
B D                     Mouse  ================
B D                      Pika  ================
B D                Coelacanth  ================
B D              Atlantic cod  ================
            Cape golden mole  ================
B D                       Pig  ================
B D                   Megabat  ================
                 Spotted gar  ================
B D               Stickleback  ================
          Southern platyfish  ================
      Yellowbelly pufferfish  ================
B D                      Fugu  ================
B D                 Tetraodon  ================
B D                   Chicken  ================
  D              Mallard duck  ================
          Tibetan ground jay  ================
B D               Zebra finch  ================
  D    White-throated sparrow  ================
    Mexican tetra (cavefish)  ================
B D                 Zebrafish  ================
B D                    Medaka  ================
         Pundamilia nyererei  ================
                 Zebra mbuna  ================
       Burton's mouthbreeder  ================
         Princess of Burundi  ================
B D              Nile tilapia  ================
  D            Painted turtle  ================
B D                Budgerigar  ================
B D                   Opossum  ================
B D            Naked mole-rat  ================
  D               Rock pigeon  ================
B D       Medium ground finch  ================
B D                    Lizard  ================
  D          Peregrine falcon  ================
  D              Saker falcon  ================
  D           Green seaturtle  ================
  D  Chinese softshell turtle  ================
B D                     Sheep  ================
  D       Collared flycatcher  ================
              Bactrian camel  ================
B D                    Alpaca  ================
              Pacific walrus  ================
B D                     Horse  ================
B D                 Armadillo  ================

Inserts between block 11 and 12 in window
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
               Domestic goat 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
                Weddell seal 1bp
            Black flying-fox 8bp
               Big brown bat 1bp
        David's myotis (bat) 1bp
B D                 Microbat 8bp

Alignment block 12 of 688 in window, 87726144 - 87726147, 4 bps 
B D                     Human  gcgg-
B D                     Chimp  gcgg-
B D                   Gorilla  gtgg-
B D                 Orangutan  gcgg-
B D                    Gibbon  gcag-
B D                    Rhesus  gcgg-
B D       Crab-eating macaque  gcgg-
B D                    Baboon  gcgg-
B D              Green monkey  gcgg-
B D                  Marmoset  gcag-
B D           Squirrel monkey  gcgg-
B D                  Bushbaby  ccag-
           Chinese tree shrew  gcag-
B D                  Squirrel  a----
B D                       Pig  ---g-
B D                   Dolphin  -cca-
                 Killer whale  -cca-
             Tibetan antelope  -ccg-
B D                       Cow  -ccg-
                Domestic goat  -ccg-
B D          White rhinoceros  -tcg-
B D                       Cat  -ctg-
B D                       Dog  -ctg-
B D                   Ferret   -acg-
B D                     Panda  -ctg-
                 Weddell seal  -ttg-
             Black flying-fox  -gtg-
                Big brown bat  -ctg-
         David's myotis (bat)  -ctg-
B D                  Microbat  -ttg-
B D                  Elephant  -cctg
B D                   Manatee  -cctg
B D                    Tenrec  -cgt-
                     Aardvark  -cctg
              Golden hamster  -----
                Prairie vole  -----
B D                     Mouse  =====
B D                      Pika  =====
B D                    Rabbit  -----
B D                Coelacanth  =====
B D              Atlantic cod  =====
            Cape golden mole  =====
B D                   Megabat  =====
                 Spotted gar  =====
B D               Stickleback  =====
          Southern platyfish  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
B D                 Tetraodon  =====
B D                   Chicken  =====
  D              Mallard duck  =====
          Tibetan ground jay  =====
B D               Zebra finch  =====
  D    White-throated sparrow  =====
    Mexican tetra (cavefish)  =====
B D                 Zebrafish  =====
B D                    Medaka  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
         Princess of Burundi  =====
B D              Nile tilapia  =====
  D            Painted turtle  =====
B D                Budgerigar  =====
B D                   Opossum  =====
B D            Naked mole-rat  =====
  D               Rock pigeon  =====
B D       Medium ground finch  =====
B D                    Lizard  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
  D           Green seaturtle  =====
  D  Chinese softshell turtle  =====
B D                     Sheep  =====
  D       Collared flycatcher  =====
              Bactrian camel  =====
B D                    Alpaca  =====
              Pacific walrus  =====
B D                     Horse  =====
B D                 Armadillo  =====

Inserts between block 12 and 13 in window
B D                      Pig 137bp

Alignment block 13 of 688 in window, 87726148 - 87726159, 12 bps 
B D                     Human  catccgtggagt
B D                     Chimp  cgtccgtggagt
B D                   Gorilla  catccgtggagt
B D                 Orangutan  tatccgtggagt
B D                    Gibbon  catccgtggagc
B D                    Rhesus  catccgtggagt
B D       Crab-eating macaque  catccgtggagt
B D                    Baboon  catccgtggagt
B D              Green monkey  catccgtggagt
B D                  Marmoset  cctccgccgagt
B D           Squirrel monkey  cctccgccgagt
B D                  Bushbaby  tgtccgcggagt
           Chinese tree shrew  c--ctgtggagt
B D                  Squirrel  -gtcttcagaga
                 Prairie vole  ---ctgtgaaga
               Golden hamster  ---ccgtggagt
B D                   Dolphin  tagttgttggct
                 Killer whale  tagttgttggct
             Tibetan antelope  gagccgccggtt
B D                       Cow  gagccgccggtt
                Domestic goat  gagccgccggtt
B D          White rhinoceros  tggttg------
B D                       Cat  tacttg-ggact
B D                       Dog  catctg-tgac-
B D                   Ferret   catctg-tgatc
B D                     Panda  catctg-agact
                 Weddell seal  cacctg-tgact
             Black flying-fox  cgtatg------
                Big brown bat  ctcgtgcaggct
         David's myotis (bat)  ccactgctgact
B D                  Microbat  cgcccgtggagt
B D                  Elephant  cttgtgctgatt
B D                   Manatee  cttatgctgact
B D                    Tenrec  cttgtgtggact
                     Aardvark  tttatgctaact
B D                     Mouse  ============
B D                      Pika  ============
B D                    Rabbit  ------------
B D                Coelacanth  ============
B D              Atlantic cod  ============
            Cape golden mole  ============
B D                       Pig  ============
B D                   Megabat  ============
                 Spotted gar  ============
B D               Stickleback  ============
          Southern platyfish  ============
      Yellowbelly pufferfish  ============
B D                      Fugu  ============
B D                 Tetraodon  ============
B D                   Chicken  ============
  D              Mallard duck  ============
          Tibetan ground jay  ============
B D               Zebra finch  ============
  D    White-throated sparrow  ============
    Mexican tetra (cavefish)  ============
B D                 Zebrafish  ============
B D                    Medaka  ============
         Pundamilia nyererei  ============
                 Zebra mbuna  ============
       Burton's mouthbreeder  ============
         Princess of Burundi  ============
B D              Nile tilapia  ============
  D            Painted turtle  ============
B D                Budgerigar  ============
B D                   Opossum  ============
B D            Naked mole-rat  ============
  D               Rock pigeon  ============
B D       Medium ground finch  ============
B D                    Lizard  ============
  D          Peregrine falcon  ============
  D              Saker falcon  ============
  D           Green seaturtle  ============
  D  Chinese softshell turtle  ============
B D                     Sheep  ============
  D       Collared flycatcher  ============
              Bactrian camel  ============
B D                    Alpaca  ============
              Pacific walrus  ============
B D                     Horse  ============
B D                 Armadillo  ============

Inserts between block 13 and 14 in window
              Golden hamster 783bp

Alignment block 14 of 688 in window, 87726160 - 87726186, 27 bps 
B D                     Human  gcgcctg-cg-c----agctacgaccg--cagcag
B D                     Chimp  gcgcctg-cg-c----agctacgaccg--cagcag
B D                   Gorilla  gcgcctg-cg-c----agctacgaccg--cagcag
B D                 Orangutan  gcgcctg-cg-c----agctaagacca--cagcag
B D                    Gibbon  gcgcctg-cg-c----agctacgacca--cagcag
B D                    Rhesus  gcgcctg-cg-c----agctacgaccg--cagcag
B D       Crab-eating macaque  gcgcctg-cg-c----agctacgaccg--cagcag
B D                    Baboon  gcgcctg-cg-c----agctacgaccg--cagcag
B D              Green monkey  gcgcctg-cg-c----agctacgaccg--cagcag
B D                  Marmoset  gcgcctg-cg-c----agctacgaccg--cagcag
B D           Squirrel monkey  gcgcctg-cg-c----agctacgaccg--cagcgg
B D                  Bushbaby  gcgcctg-cg-c----agctgcg-------agcgg
           Chinese tree shrew  gagtatt-ag-c----agctgtgagct--ttgcag
B D                  Squirrel  gcacctg-caga----aggtttggcca--caccag
                 Prairie vole  acacctg-cc-c----agctgtggacg--tcccag
B D                    Rabbit  --------------------------------cag
B D                   Dolphin  gcgcctg-cg-c----agctgcgcctg--ccgcag
                 Killer whale  gcgcctg-cg-c----agctgcgcctg--ccgcag
             Tibetan antelope  gcgcctg-tg-c----ggcagcccccg--ccacag
B D                       Cow  gtgcctg-tg-cggcaggcagccctcg--ccacag
                Domestic goat  gcccctg-tg-c----ggcagccctcg--ccacag
B D          White rhinoceros  gttgtcg-tg-c----tgctccgcgta--ccactg
B D                       Cat  gtgccta-ca-c----agctacacctg--ccacag
B D                       Dog  -agccta-aa-c----aactgct-ctgaacaacag
B D                   Ferret   gagactg-cg-c----agctgca-ctg--cctc--
B D                     Panda  gagcctg-ct-c----cactgcacctg--tcccag
                 Weddell seal  gggtcag-ag-t----agctgtaactg--ccacag
             Black flying-fox  --------cg-c----agctgtagctg--ccacag
                Big brown bat  gctgtttgca-c----agctgctccct--ccgcag
         David's myotis (bat)  gcacctt-ct-c----agctgcgacca--cagcag
B D                  Microbat  gcggcct-cc-c----agctgtgg-cg--ccgcag
B D                  Elephant  gcacctg-caac----agctgtggctt--ctgcag
B D                   Manatee  acgccag-cgcc----cgctgcggact--ctgcag
B D                    Tenrec  gcgcctg-cgcc----agctgcgggcc--ctgcag
                     Aardvark  actcctg-cagc----agctgcagcct--ctatag
              Golden hamster  ===================================
B D                     Mouse  ===================================
B D                      Pika  ===================================
B D                Coelacanth  ===================================
B D              Atlantic cod  ===================================
            Cape golden mole  ===================================
B D                       Pig  ===================================
B D                   Megabat  ===================================
                 Spotted gar  ===================================
B D               Stickleback  ===================================
          Southern platyfish  ===================================
      Yellowbelly pufferfish  ===================================
B D                      Fugu  ===================================
B D                 Tetraodon  ===================================
B D                   Chicken  ===================================
  D              Mallard duck  ===================================
          Tibetan ground jay  ===================================
B D               Zebra finch  ===================================
  D    White-throated sparrow  ===================================
    Mexican tetra (cavefish)  ===================================
B D                 Zebrafish  ===================================
B D                    Medaka  ===================================
         Pundamilia nyererei  ===================================
                 Zebra mbuna  ===================================
       Burton's mouthbreeder  ===================================
         Princess of Burundi  ===================================
B D              Nile tilapia  ===================================
  D            Painted turtle  ===================================
B D                Budgerigar  ===================================
B D                   Opossum  ===================================
B D            Naked mole-rat  ===================================
  D               Rock pigeon  ===================================
B D       Medium ground finch  ===================================
B D                    Lizard  ===================================
  D          Peregrine falcon  ===================================
  D              Saker falcon  ===================================
  D           Green seaturtle  ===================================
  D  Chinese softshell turtle  ===================================
B D                     Sheep  ===================================
  D       Collared flycatcher  ===================================
              Bactrian camel  ===================================
B D                    Alpaca  ===================================
              Pacific walrus  ===================================
B D                     Horse  ===================================
B D                 Armadillo  ===================================

Inserts between block 14 and 15 in window
B D         White rhinoceros 2bp
B D                      Cat 2bp
B D                      Dog 2bp
B D                    Panda 2bp
                Weddell seal 2bp
            Black flying-fox 2bp
               Big brown bat 2bp
        David's myotis (bat) 2bp
B D                 Microbat 573bp

Alignment block 15 of 688 in window, 87726187 - 87726187, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                    Rhesus  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                  Bushbaby  g
           Chinese tree shrew  g
B D                  Squirrel  g
                 Prairie vole  g
B D                    Rabbit  g
B D                   Dolphin  g
                 Killer whale  g
             Tibetan antelope  g
B D                       Cow  g
                Domestic goat  g
B D          White rhinoceros  g
B D                       Cat  g
B D                       Dog  g
B D                   Ferret   g
B D                     Panda  g
                 Weddell seal  g
             Black flying-fox  c
                Big brown bat  g
         David's myotis (bat)  g
B D                  Elephant  g
B D                   Manatee  g
B D                    Tenrec  g
                     Aardvark  g
              Golden hamster  =
B D                     Mouse  =
B D                      Pika  =
B D                Coelacanth  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
B D                   Megabat  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
  D  Chinese softshell turtle  =
B D                     Sheep  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
              Pacific walrus  =
B D                     Horse  =
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 15 and 16 in window
B D                  Dolphin 2bp
                Killer whale 2bp
            Tibetan antelope 330bp
B D                      Cow 2bp
               Domestic goat 2bp

Alignment block 16 of 688 in window, 87726188 - 87726190, 3 bps 
B D                     Human  aaa
B D                     Chimp  aaa
B D                   Gorilla  aaa
B D                 Orangutan  aaa
B D                    Gibbon  aaa
B D                    Rhesus  aaa
B D       Crab-eating macaque  aaa
B D                    Baboon  aaa
B D              Green monkey  aaa
B D                  Marmoset  aaa
B D           Squirrel monkey  aaa
B D                  Bushbaby  tga
           Chinese tree shrew  tga
B D                  Squirrel  tga
                 Prairie vole  tga
B D                    Rabbit  tga
B D                   Dolphin  --a
                 Killer whale  --a
B D                       Cow  --a
                Domestic goat  --a
B D          White rhinoceros  --a
B D                       Cat  --a
B D                       Dog  --a
B D                   Ferret   --c
B D                     Panda  --a
                 Weddell seal  --a
             Black flying-fox  --a
                Big brown bat  --a
         David's myotis (bat)  --a
B D                  Elephant  tga
B D                   Manatee  tga
B D                    Tenrec  taa
                     Aardvark  tag
              Golden hamster  ===
B D                     Mouse  ===
B D                      Pika  ===
B D                Coelacanth  ===
B D              Atlantic cod  ===
            Cape golden mole  ===
B D                       Pig  ===
B D                   Megabat  ===
                 Spotted gar  ===
B D               Stickleback  ===
          Southern platyfish  ===
      Yellowbelly pufferfish  ===
B D                      Fugu  ===
B D                 Tetraodon  ===
B D                   Chicken  ===
  D              Mallard duck  ===
          Tibetan ground jay  ===
B D               Zebra finch  ===
  D    White-throated sparrow  ===
    Mexican tetra (cavefish)  ===
B D                 Zebrafish  ===
B D                    Medaka  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
         Princess of Burundi  ===
B D              Nile tilapia  ===
  D            Painted turtle  ===
B D                Budgerigar  ===
B D                   Opossum  ===
B D            Naked mole-rat  ===
  D               Rock pigeon  ===
B D       Medium ground finch  ===
B D                    Lizard  ===
  D          Peregrine falcon  ===
  D              Saker falcon  ===
  D           Green seaturtle  ===
  D  Chinese softshell turtle  ===
B D                     Sheep  ===
            Tibetan antelope  ===
  D       Collared flycatcher  ===
              Bactrian camel  ===
B D                    Alpaca  ===
              Pacific walrus  ===
B D                     Horse  ===
B D                  Microbat  ===
B D                 Armadillo  ===

Alignment block 17 of 688 in window, 87726191 - 87726191, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                    Rhesus  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                  Bushbaby  g
           Chinese tree shrew  g
B D                  Squirrel  g
                 Prairie vole  g
B D                    Rabbit  g
B D                   Dolphin  g
                 Killer whale  g
B D                       Cow  g
                Domestic goat  g
B D          White rhinoceros  g
B D                       Cat  g
B D                       Dog  g
B D                   Ferret   g
B D                     Panda  g
                 Weddell seal  a
             Black flying-fox  g
B D                   Megabat  g
                Big brown bat  g
         David's myotis (bat)  g
B D                  Elephant  g
B D                   Manatee  g
B D                    Tenrec  g
                     Aardvark  g
              Golden hamster  =
B D                     Mouse  =
B D                      Pika  =
B D                Coelacanth  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
  D  Chinese softshell turtle  =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
              Pacific walrus  =
B D                     Horse  =
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 17 and 18 in window
B D                      Cat 97bp
B D                      Dog 2bp
B D                  Ferret  1bp
B D                    Panda 1bp
                Weddell seal 1bp

Alignment block 18 of 688 in window, 87726192 - 87726192, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  t
           Chinese tree shrew  c
B D                  Squirrel  t
                 Prairie vole  c
B D                    Rabbit  t
B D                   Dolphin  c
                 Killer whale  c
B D                       Cow  c
                Domestic goat  c
B D          White rhinoceros  c
             Black flying-fox  t
B D                   Megabat  c
                Big brown bat  c
         David's myotis (bat)  t
B D                  Elephant  c
B D                   Manatee  c
B D                    Tenrec  c
                     Aardvark  t
              Golden hamster  =
B D                     Mouse  =
B D                      Pika  =
B D                Coelacanth  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  =
                Weddell seal  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
              Pacific walrus  =
B D                     Panda  =
B D                       Dog  =
B D                     Horse  =
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 18 and 19 in window
B D         White rhinoceros 2bp
B D                  Megabat 8bp

Alignment block 19 of 688 in window, 87726193 - 87726193, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                    Rhesus  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                  Bushbaby  g
           Chinese tree shrew  a
B D                  Squirrel  g
                 Prairie vole  c
B D                    Rabbit  g
B D                   Dolphin  a
                 Killer whale  a
B D                       Cow  g
                Domestic goat  g
B D                       Dog  t
             Black flying-fox  a
                Big brown bat  a
         David's myotis (bat)  g
B D                  Elephant  g
B D                   Manatee  c
B D                    Tenrec  g
                     Aardvark  g
              Golden hamster  =
B D                     Mouse  =
B D                      Pika  =
B D                Coelacanth  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
B D                   Megabat  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  =
                Weddell seal  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
              Pacific walrus  =
B D                     Panda  =
B D          White rhinoceros  =
B D                     Horse  =
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 19 and 20 in window
                    Aardvark 34380bp

Alignment block 20 of 688 in window, 87726194 - 87726198, 5 bps 
B D                     Human  --ccgcc
B D                     Chimp  --ccgcc
B D                   Gorilla  --ccgcc
B D                 Orangutan  --ccgcc
B D                    Gibbon  --ccgcc
B D                    Rhesus  --ctgcc
B D       Crab-eating macaque  --ctgcc
B D                    Baboon  --ctgcc
B D              Green monkey  --ctgcc
B D                  Marmoset  --ccgcc
B D           Squirrel monkey  --ccgcc
B D                  Bushbaby  --cccca
           Chinese tree shrew  --cccct
B D                  Squirrel  --cca--
                 Prairie vole  --cca--
B D                    Rabbit  --cct--
B D                   Dolphin  --cc---
                 Killer whale  --cc---
B D                       Cow  --cc---
                Domestic goat  --cc---
B D          White rhinoceros  --cc---
B D                       Dog  --cc---
B D                   Ferret   --ca---
B D                     Panda  --tc---
                 Weddell seal  --cc---
             Black flying-fox  --ct---
                Big brown bat  --cc---
         David's myotis (bat)  --ct---
B D                  Elephant  ccct---
B D                   Manatee  ccct---
B D                    Tenrec  cgtt---
              Golden hamster  =======
B D                     Mouse  =======
B D                      Pika  =======
B D                Coelacanth  =======
                    Aardvark  =======
B D              Atlantic cod  =======
            Cape golden mole  =======
B D                       Pig  =======
B D                   Megabat  =======
                 Spotted gar  =======
B D               Stickleback  =======
          Southern platyfish  =======
      Yellowbelly pufferfish  =======
B D                      Fugu  =======
B D                 Tetraodon  =======
B D                   Chicken  =======
  D              Mallard duck  =======
          Tibetan ground jay  =======
B D               Zebra finch  =======
  D    White-throated sparrow  =======
    Mexican tetra (cavefish)  =======
B D                 Zebrafish  =======
B D                    Medaka  =======
         Pundamilia nyererei  =======
                 Zebra mbuna  =======
       Burton's mouthbreeder  =======
         Princess of Burundi  =======
B D              Nile tilapia  =======
  D            Painted turtle  =======
B D                Budgerigar  =======
B D                   Opossum  =======
B D            Naked mole-rat  =======
  D               Rock pigeon  =======
B D       Medium ground finch  =======
B D                    Lizard  =======
  D          Peregrine falcon  =======
  D              Saker falcon  =======
  D           Green seaturtle  =======
B D                       Cat  =======
  D  Chinese softshell turtle  =======
B D                     Sheep  =======
            Tibetan antelope  =======
  D       Collared flycatcher  =======
              Bactrian camel  =======
B D                    Alpaca  =======
              Pacific walrus  =======
B D                     Horse  =======
B D                  Microbat  =======
B D                 Armadillo  =======

Inserts between block 20 and 21 in window
B D                  Dolphin 3bp
                Killer whale 3bp
B D                      Cow 3bp
               Domestic goat 3bp
B D         White rhinoceros 2bp
B D                      Dog 2bp
B D                  Ferret  2bp
B D                    Panda 2bp
                Weddell seal 2bp
            Black flying-fox 3bp
               Big brown bat 342bp
        David's myotis (bat) 2bp

Alignment block 21 of 688 in window, 87726199 - 87726200, 2 bps 
B D                     Human  gg
B D                     Chimp  gg
B D                   Gorilla  gg
B D                 Orangutan  gg
B D                    Gibbon  gg
B D                    Rhesus  gg
B D       Crab-eating macaque  gg
B D                    Baboon  gg
B D              Green monkey  gg
B D                  Marmoset  cg
B D           Squirrel monkey  gg
B D                  Bushbaby  ga
           Chinese tree shrew  ag
B D                   Dolphin  -g
                 Killer whale  -g
B D                       Cow  -g
                Domestic goat  -g
B D          White rhinoceros  -g
B D                       Dog  -g
B D                   Ferret   -g
B D                     Panda  -c
                 Weddell seal  -g
             Black flying-fox  -g
         David's myotis (bat)  tg
B D                  Elephant  gg
B D                   Manatee  gg
B D                    Tenrec  ga
              Golden hamster  ==
                Prairie vole  --
B D                     Mouse  ==
B D                      Pika  ==
B D                    Rabbit  --
B D                Coelacanth  ==
                    Aardvark  ==
B D              Atlantic cod  ==
            Cape golden mole  ==
B D                       Pig  ==
B D                   Megabat  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D           Green seaturtle  ==
B D                       Cat  ==
  D  Chinese softshell turtle  ==
B D                     Sheep  ==
            Tibetan antelope  ==
  D       Collared flycatcher  ==
              Bactrian camel  ==
B D                    Alpaca  ==
               Big brown bat  ==
              Pacific walrus  ==
B D                     Horse  ==
B D                  Squirrel  --
B D                  Microbat  ==
B D                 Armadillo  ==

Inserts between block 21 and 22 in window
B D                  Dolphin 1bp
                Killer whale 1bp
B D                      Cow 1bp
               Domestic goat 1bp
B D         White rhinoceros 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
                Weddell seal 1bp
            Black flying-fox 1bp

Alignment block 22 of 688 in window, 87726201 - 87726201, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                  Bushbaby  c
           Chinese tree shrew  c
B D                   Dolphin  c
                 Killer whale  c
B D                       Cow  a
                Domestic goat  c
B D          White rhinoceros  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
                 Weddell seal  c
             Black flying-fox  c
B D                   Megabat  c
         David's myotis (bat)  c
B D                  Elephant  c
B D                   Manatee  c
B D                    Tenrec  t
              Golden hamster  =
                Prairie vole  -
B D                     Mouse  =
B D                      Pika  =
B D                    Rabbit  -
B D                Coelacanth  =
                    Aardvark  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  =
  D  Chinese softshell turtle  =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
               Big brown bat  =
              Pacific walrus  =
B D                     Horse  =
B D                  Squirrel  -
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 22 and 23 in window
            Black flying-fox 2bp
B D                  Megabat 706bp

Alignment block 23 of 688 in window, 87726202 - 87726202, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  c
B D                  Squirrel  c
B D                    Rabbit  c
B D                   Dolphin  t
                 Killer whale  t
B D                       Cow  t
                Domestic goat  t
B D          White rhinoceros  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
                 Weddell seal  c
             Black flying-fox  c
         David's myotis (bat)  c
B D                  Elephant  t
B D                   Manatee  t
B D                    Tenrec  t
              Golden hamster  =
                Prairie vole  -
B D                     Mouse  =
B D                      Pika  =
B D                Coelacanth  =
                    Aardvark  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
B D                   Megabat  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  =
  D  Chinese softshell turtle  =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
               Big brown bat  =
              Pacific walrus  =
B D                     Horse  =
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 23 and 24 in window
B D                    Panda 1bp
                Weddell seal 219bp

Alignment block 24 of 688 in window, 87726203 - 87726203, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                  Bushbaby  a
           Chinese tree shrew  a
B D                  Squirrel  t
                 Prairie vole  t
B D                    Rabbit  t
B D                   Dolphin  g
                 Killer whale  g
B D                       Cow  g
                Domestic goat  g
B D          White rhinoceros  g
B D                       Dog  a
B D                   Ferret   a
B D                     Panda  a
             Black flying-fox  g
         David's myotis (bat)  a
B D                  Elephant  g
B D                   Manatee  g
B D                    Tenrec  g
              Golden hamster  =
B D                     Mouse  =
B D                      Pika  =
B D                Coelacanth  =
                    Aardvark  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
B D                   Megabat  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  =
                Weddell seal  =
  D  Chinese softshell turtle  =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
               Big brown bat  =
              Pacific walrus  =
B D                     Horse  =
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 24 and 25 in window
B D                  Ferret  232bp

Alignment block 25 of 688 in window, 87726204 - 87726205, 2 bps 
B D                     Human  gg
B D                     Chimp  gg
B D                   Gorilla  gg
B D                 Orangutan  gg
B D                    Gibbon  gg
B D                    Rhesus  gg
B D       Crab-eating macaque  gg
B D                    Baboon  gg
B D              Green monkey  gg
B D                  Marmoset  gg
B D           Squirrel monkey  gg
B D                  Bushbaby  gg
           Chinese tree shrew  gg
B D                  Squirrel  ag
                 Prairie vole  ag
B D                    Rabbit  ga
B D                   Dolphin  gg
                 Killer whale  gg
B D                       Cow  ag
                Domestic goat  gg
B D          White rhinoceros  ag
B D                       Dog  gg
B D                     Panda  gg
             Black flying-fox  -g
         David's myotis (bat)  -g
B D                  Elephant  gg
B D                   Manatee  gg
B D                    Tenrec  gg
              Golden hamster  ==
B D                     Mouse  ==
B D                      Pika  ==
B D                Coelacanth  ==
                    Aardvark  ==
B D              Atlantic cod  ==
            Cape golden mole  ==
B D                       Pig  ==
B D                   Megabat  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D           Green seaturtle  ==
B D                       Cat  ==
                Weddell seal  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
B D                     Sheep  ==
            Tibetan antelope  ==
  D       Collared flycatcher  ==
              Bactrian camel  ==
B D                    Alpaca  ==
               Big brown bat  ==
              Pacific walrus  ==
B D                     Horse  ==
B D                  Microbat  ==
B D                 Armadillo  ==

Inserts between block 25 and 26 in window
B D                 Bushbaby 1bp
                Killer whale 1bp
B D                      Cow 1bp
               Domestic goat 1bp

Alignment block 26 of 688 in window, 87726206 - 87726206, 1 bps 
B D                     Human  -c
B D                     Chimp  -c
B D                   Gorilla  -c
B D                 Orangutan  -c
B D                    Gibbon  -c
B D                    Rhesus  -c
B D       Crab-eating macaque  -c
B D                    Baboon  -c
B D              Green monkey  -c
B D                  Marmoset  -c
B D           Squirrel monkey  -c
B D                  Bushbaby  -c
           Chinese tree shrew  -c
B D                  Squirrel  -c
                 Prairie vole  -c
B D                    Rabbit  -c
B D          White rhinoceros  -t
B D                       Dog  -c
B D                     Panda  -c
             Black flying-fox  -c
         David's myotis (bat)  -g
B D                  Elephant  g-
B D                   Manatee  g-
B D                    Tenrec  g-
              Golden hamster  ==
B D                     Mouse  ==
B D                      Pika  ==
B D                Coelacanth  ==
                    Aardvark  ==
B D              Atlantic cod  ==
            Cape golden mole  ==
B D                       Pig  ==
B D                   Megabat  ==
B D                   Dolphin  --
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D           Green seaturtle  ==
B D                       Cat  ==
                Weddell seal  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
  D       Collared flycatcher  ==
              Bactrian camel  ==
B D                    Alpaca  ==
               Big brown bat  ==
              Pacific walrus  ==
B D                       Cow  ==
                Killer whale  ==
B D                     Horse  ==
B D                  Microbat  ==
B D                 Armadillo  ==

Alignment block 27 of 688 in window, 87726207 - 87726207, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  c
B D                  Squirrel  c
                 Prairie vole  t
                 Killer whale  c
B D                       Cow  c
                Domestic goat  c
B D          White rhinoceros  c
B D                       Dog  c
B D                     Panda  c
             Black flying-fox  c
         David's myotis (bat)  c
B D                  Elephant  c
B D                   Manatee  c
B D                    Tenrec  c
              Golden hamster  =
B D                     Mouse  =
B D                      Pika  =
B D                    Rabbit  -
B D                Coelacanth  =
                    Aardvark  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
B D                   Megabat  =
B D                   Dolphin  -
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  =
                Weddell seal  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
               Big brown bat  =
              Pacific walrus  =
B D                     Horse  =
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 27 and 28 in window
B D         White rhinoceros 1bp
B D                      Dog 230bp
B D                    Panda 214bp
            Black flying-fox 2bp
        David's myotis (bat) 2bp

Alignment block 28 of 688 in window, 87726208 - 87726208, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  t
B D                  Squirrel  t
                 Prairie vole  c
                 Killer whale  c
B D                       Cow  a
                Domestic goat  a
B D                  Elephant  c
B D                   Manatee  t
B D                    Tenrec  g
              Golden hamster  =
B D                     Mouse  =
B D                      Pika  =
B D                    Rabbit  -
B D                Coelacanth  =
                    Aardvark  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
B D                   Megabat  =
B D                   Dolphin  -
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  =
                Weddell seal  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
               Big brown bat  =
              Pacific walrus  =
B D                     Panda  =
B D                       Dog  =
            Black flying-fox  =
B D          White rhinoceros  =
B D                     Horse  =
        David's myotis (bat)  =
B D                  Microbat  =
B D                 Armadillo  =

Alignment block 29 of 688 in window, 87726209 - 87726220, 12 bps 
B D                     Human  a--------gctgtggc--cgg
B D                     Chimp  a--------gctgtggc--cgg
B D                   Gorilla  a--------gctgtggc--cgg
B D                 Orangutan  a--------gctgtggc--cgg
B D                    Gibbon  a--------gctgtggc--cgg
B D                    Rhesus  a--------gctggggc--cgg
B D       Crab-eating macaque  a--------gctggggc--cgg
B D                    Baboon  a--------gctggggc--cgg
B D              Green monkey  a--------gctgtggc--cgg
B D                  Marmoset  a--------gctgtggc--cgg
B D           Squirrel monkey  a--------gctgtggc--cgg
B D                  Bushbaby  g--------ggcaggga--ggg
           Chinese tree shrew  a--------agtgaggt--gga
B D                  Squirrel  c--------actgaggt--atg
                 Prairie vole  t--------cccaaggc--cga
B D                   Dolphin  --------------gcc--tg-
                 Killer whale  t--------g--gcgcc--tg-
B D                       Cow  t--------ggtgcggc--gg-
                Domestic goat  t--------ggcgcggc--gg-
B D          White rhinoceros  g--------ggcgccgcg-gg-
             Black flying-fox  ---------ggcgcgtcaagg-
         David's myotis (bat)  ---------ggctgggctcgg-
B D                  Elephant  a--------ggtacggc--aga
B D                   Manatee  g--------ggctcggc--gga
B D                    Tenrec  gctagttgaggggcggc--tgg
              Golden hamster  ======================
B D                     Mouse  ======================
B D                      Pika  ======================
B D                    Rabbit  ----------------------
B D                Coelacanth  ======================
                    Aardvark  ======================
B D              Atlantic cod  ======================
            Cape golden mole  ======================
B D                       Pig  ======================
B D                   Megabat  ======================
                 Spotted gar  ======================
B D               Stickleback  ======================
          Southern platyfish  ======================
      Yellowbelly pufferfish  ======================
B D                      Fugu  ======================
B D                 Tetraodon  ======================
B D                   Chicken  ======================
  D              Mallard duck  ======================
          Tibetan ground jay  ======================
B D               Zebra finch  ======================
  D    White-throated sparrow  ======================
    Mexican tetra (cavefish)  ======================
B D                 Zebrafish  ======================
B D                    Medaka  ======================
         Pundamilia nyererei  ======================
                 Zebra mbuna  ======================
       Burton's mouthbreeder  ======================
         Princess of Burundi  ======================
B D              Nile tilapia  ======================
  D            Painted turtle  ======================
B D                Budgerigar  ======================
B D                   Opossum  ======================
B D            Naked mole-rat  ======================
  D               Rock pigeon  ======================
B D       Medium ground finch  ======================
B D                    Lizard  ======================
  D          Peregrine falcon  ======================
  D              Saker falcon  ======================
  D           Green seaturtle  ======================
B D                       Cat  ======================
                Weddell seal  ======================
  D  Chinese softshell turtle  ======================
B D                   Ferret   ======================
B D                     Sheep  ======================
            Tibetan antelope  ======================
  D       Collared flycatcher  ======================
              Bactrian camel  ======================
B D                    Alpaca  ======================
               Big brown bat  ======================
              Pacific walrus  ======================
B D                     Panda  ======================
B D                       Dog  ======================
B D                     Horse  ======================
B D                  Microbat  ======================
B D                 Armadillo  ======================

Inserts between block 29 and 30 in window
B D                      Cow 277bp
               Domestic goat 204bp
B D                  Manatee 1bp
B D                   Tenrec 1bp

Alignment block 30 of 688 in window, 87726221 - 87726223, 3 bps 
B D                     Human  aca
B D                     Chimp  aca
B D                   Gorilla  aca
B D                 Orangutan  aca
B D                    Gibbon  aca
B D                    Rhesus  aca
B D       Crab-eating macaque  aca
B D                    Baboon  aca
B D              Green monkey  aca
B D                  Marmoset  acc
B D           Squirrel monkey  acc
B D                  Bushbaby  aca
           Chinese tree shrew  atg
B D                  Squirrel  gca
                 Prairie vole  ctg
B D                   Dolphin  acg
                 Killer whale  gcg
B D          White rhinoceros  cca
             Black flying-fox  aca
         David's myotis (bat)  cca
B D                  Elephant  gca
B D                   Manatee  gca
B D                    Tenrec  cc-
              Golden hamster  ===
B D                     Mouse  ===
B D                      Pika  ===
B D                    Rabbit  ---
B D                Coelacanth  ===
                    Aardvark  ===
B D              Atlantic cod  ===
            Cape golden mole  ===
B D                       Pig  ===
B D                   Megabat  ===
                 Spotted gar  ===
B D               Stickleback  ===
          Southern platyfish  ===
      Yellowbelly pufferfish  ===
B D                      Fugu  ===
B D                 Tetraodon  ===
B D                   Chicken  ===
  D              Mallard duck  ===
          Tibetan ground jay  ===
B D               Zebra finch  ===
  D    White-throated sparrow  ===
    Mexican tetra (cavefish)  ===
B D                 Zebrafish  ===
B D                    Medaka  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
         Princess of Burundi  ===
B D              Nile tilapia  ===
  D            Painted turtle  ===
B D                Budgerigar  ===
B D                   Opossum  ===
B D            Naked mole-rat  ===
  D               Rock pigeon  ===
B D       Medium ground finch  ===
B D                    Lizard  ===
  D          Peregrine falcon  ===
  D              Saker falcon  ===
  D           Green seaturtle  ===
B D                       Cat  ===
                Weddell seal  ===
  D  Chinese softshell turtle  ===
B D                   Ferret   ===
               Domestic goat  ===
B D                     Sheep  ===
            Tibetan antelope  ===
  D       Collared flycatcher  ===
              Bactrian camel  ===
B D                    Alpaca  ===
               Big brown bat  ===
              Pacific walrus  ===
B D                     Panda  ===
B D                       Cow  ===
B D                       Dog  ===
B D                     Horse  ===
B D                  Microbat  ===
B D                 Armadillo  ===

Inserts between block 30 and 31 in window
        David's myotis (bat) 98549bp

Alignment block 31 of 688 in window, 87726224 - 87726225, 2 bps 
B D                     Human  gg
B D                     Chimp  gg
B D                   Gorilla  gg
B D                 Orangutan  gc
B D                    Gibbon  gg
B D                    Rhesus  gg
B D       Crab-eating macaque  gg
B D                    Baboon  gg
B D              Green monkey  gg
B D                  Marmoset  ag
B D           Squirrel monkey  ag
B D                  Bushbaby  gg
           Chinese tree shrew  gt
B D                  Squirrel  gg
                 Prairie vole  gg
             Black flying-fox  gg
B D                  Elephant  gg
B D                   Manatee  gg
              Golden hamster  ==
B D                     Mouse  ==
B D                      Pika  ==
B D                    Rabbit  --
B D                Coelacanth  ==
                    Aardvark  ==
B D              Atlantic cod  ==
            Cape golden mole  ==
B D                       Pig  ==
B D                   Megabat  ==
B D                   Dolphin  --
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
B D                    Tenrec  --
  D           Green seaturtle  ==
B D                       Cat  ==
                Weddell seal  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
  D       Collared flycatcher  ==
              Bactrian camel  ==
B D                    Alpaca  ==
               Big brown bat  ==
              Pacific walrus  ==
B D                     Panda  ==
B D                       Cow  ==
                Killer whale  --
B D                       Dog  ==
B D          White rhinoceros  --
B D                     Horse  ==
        David's myotis (bat)  ==
B D                  Microbat  ==
B D                 Armadillo  ==

Alignment block 32 of 688 in window, 87726226 - 87726229, 4 bps 
B D                     Human  gact
B D                     Chimp  gact
B D                   Gorilla  gact
B D                 Orangutan  gact
B D                    Gibbon  gact
B D                    Rhesus  gact
B D       Crab-eating macaque  gact
B D                    Baboon  gact
B D              Green monkey  gact
B D                  Marmoset  gact
B D           Squirrel monkey  gact
B D                  Bushbaby  ggct
           Chinese tree shrew  aaga
B D                  Squirrel  aaca
                 Prairie vole  aact
             Black flying-fox  gact
B D                  Elephant  gttt
B D                   Manatee  gcct
B D                    Tenrec  -cct
                     Aardvark  ccct
              Golden hamster  ====
B D                     Mouse  ====
B D                      Pika  ====
B D                    Rabbit  ----
B D                Coelacanth  ====
B D              Atlantic cod  ====
            Cape golden mole  ====
B D                       Pig  ====
B D                   Megabat  ====
B D                   Dolphin  ----
                 Spotted gar  ====
B D               Stickleback  ====
          Southern platyfish  ====
      Yellowbelly pufferfish  ====
B D                      Fugu  ====
B D                 Tetraodon  ====
B D                   Chicken  ====
  D              Mallard duck  ====
          Tibetan ground jay  ====
B D               Zebra finch  ====
  D    White-throated sparrow  ====
    Mexican tetra (cavefish)  ====
B D                 Zebrafish  ====
B D                    Medaka  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
  D            Painted turtle  ====
B D                Budgerigar  ====
B D                   Opossum  ====
B D            Naked mole-rat  ====
  D               Rock pigeon  ====
B D       Medium ground finch  ====
B D                    Lizard  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
  D           Green seaturtle  ====
B D                       Cat  ====
                Weddell seal  ====
  D  Chinese softshell turtle  ====
B D                   Ferret   ====
               Domestic goat  ====
B D                     Sheep  ====
            Tibetan antelope  ====
  D       Collared flycatcher  ====
              Bactrian camel  ====
B D                    Alpaca  ====
               Big brown bat  ====
              Pacific walrus  ====
B D                     Panda  ====
B D                       Cow  ====
                Killer whale  ----
B D                       Dog  ====
B D          White rhinoceros  ----
B D                     Horse  ====
        David's myotis (bat)  ====
B D                  Microbat  ====
B D                 Armadillo  ====

Inserts between block 32 and 33 in window
                    Aardvark 29bp

Alignment block 33 of 688 in window, 87726230 - 87726244, 15 bps 
B D                     Human  gg--------aagagagg-------------acgc-g
B D                     Chimp  gg--------aagagagg-------------acgc-g
B D                   Gorilla  gg--------aagagagg-------------acgc-g
B D                 Orangutan  gg--------aagagagg-------------acgc-g
B D                    Gibbon  gg--------a--agagg-------------acgc-g
B D                    Rhesus  gg--------aagagagg-------------acgc-g
B D       Crab-eating macaque  gg--------aagagagg-------------acgc-g
B D                    Baboon  gg--------aagagagg-------------acgc-g
B D              Green monkey  gg--------gagagagg-------------acgc-g
B D                  Marmoset  gg--------aagagagg-------------acgc-g
B D           Squirrel monkey  gg--------aagagacg-------------acgc-g
B D                  Bushbaby  gg--------aggaggggacctcccgcaagaacac-a
           Chinese tree shrew  ag--------agatgaag-------------atgctt
B D                  Squirrel  aggacttagaagagggga-------------actc-t
                 Prairie vole  gacact----ggaagagc-------------accc-t
B D                    Rabbit  ----------aggtgggg-------------attc-c
B D                   Dolphin  ----------cggcaggg-------------------
                 Killer whale  ----------cggcgggg-------------------
             Black flying-fox  gg--------aggcgggg-------------------
B D                  Elephant  gg--------aggaggga-------------cccc-t
B D                   Manatee  cg--------gggagcga-------------ttcc-t
B D                    Tenrec  gg--------aggaggga-------------cccc-t
              Golden hamster  =====================================
B D                     Mouse  =====================================
B D                      Pika  =====================================
B D                Coelacanth  =====================================
                    Aardvark  =====================================
B D              Atlantic cod  =====================================
            Cape golden mole  =====================================
B D                       Pig  =====================================
B D                   Megabat  =====================================
                 Spotted gar  =====================================
B D               Stickleback  =====================================
          Southern platyfish  =====================================
      Yellowbelly pufferfish  =====================================
B D                      Fugu  =====================================
B D                 Tetraodon  =====================================
B D                   Chicken  =====================================
  D              Mallard duck  =====================================
          Tibetan ground jay  =====================================
B D               Zebra finch  =====================================
  D    White-throated sparrow  =====================================
    Mexican tetra (cavefish)  =====================================
B D                 Zebrafish  =====================================
B D                    Medaka  =====================================
         Pundamilia nyererei  =====================================
                 Zebra mbuna  =====================================
       Burton's mouthbreeder  =====================================
         Princess of Burundi  =====================================
B D              Nile tilapia  =====================================
  D            Painted turtle  =====================================
B D                Budgerigar  =====================================
B D                   Opossum  =====================================
B D            Naked mole-rat  =====================================
  D               Rock pigeon  =====================================
B D       Medium ground finch  =====================================
B D                    Lizard  =====================================
  D          Peregrine falcon  =====================================
  D              Saker falcon  =====================================
  D           Green seaturtle  =====================================
B D                       Cat  =====================================
                Weddell seal  =====================================
  D  Chinese softshell turtle  =====================================
B D                   Ferret   =====================================
               Domestic goat  =====================================
B D                     Sheep  =====================================
            Tibetan antelope  =====================================
  D       Collared flycatcher  =====================================
              Bactrian camel  =====================================
B D                    Alpaca  =====================================
               Big brown bat  =====================================
              Pacific walrus  =====================================
B D                     Panda  =====================================
B D                       Cow  =====================================
B D                       Dog  =====================================
B D          White rhinoceros  -------------------------------------
B D                     Horse  =====================================
        David's myotis (bat)  =====================================
B D                  Microbat  =====================================
B D                 Armadillo  =====================================

Inserts between block 33 and 34 in window
B D                  Dolphin 1bp
                Killer whale 1bp
            Black flying-fox 21bp
B D                 Elephant 11bp
B D                  Manatee 11bp

Alignment block 34 of 688 in window, 87726245 - 87726245, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                    Rhesus  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                  Bushbaby  g
           Chinese tree shrew  g
B D                  Squirrel  g
                 Prairie vole  a
B D                    Rabbit  g
B D                  Elephant  g
B D                   Manatee  g
             Cape golden mole  a
B D                    Tenrec  g
              Golden hamster  =
B D                     Mouse  =
B D                      Pika  =
B D                Coelacanth  =
                    Aardvark  =
B D              Atlantic cod  =
B D                       Pig  =
B D                   Megabat  =
B D                   Dolphin  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  =
                Weddell seal  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
               Big brown bat  =
              Pacific walrus  =
B D                     Panda  =
B D                       Cow  =
                Killer whale  =
B D                       Dog  =
            Black flying-fox  =
B D          White rhinoceros  -
B D                     Horse  =
        David's myotis (bat)  =
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 34 and 35 in window
            Cape golden mole 48bp
B D                   Tenrec 10bp

Alignment block 35 of 688 in window, 87726246 - 87726246, 1 bps 
B D                     Human  -t
B D                     Chimp  -t
B D                   Gorilla  -t
B D                 Orangutan  -t
B D                    Gibbon  -t
B D                    Rhesus  -t
B D       Crab-eating macaque  -t
B D                    Baboon  -t
B D              Green monkey  -t
B D                  Marmoset  -t
B D           Squirrel monkey  -t
B D                  Bushbaby  -t
           Chinese tree shrew  -t
B D                  Squirrel  -t
                 Prairie vole  -g
B D                    Rabbit  -c
B D                  Elephant  g-
B D                   Manatee  g-
B D                    Tenrec  g-
              Golden hamster  ==
B D                     Mouse  ==
B D                      Pika  ==
B D                Coelacanth  ==
                    Aardvark  ==
B D              Atlantic cod  ==
            Cape golden mole  ==
B D                       Pig  ==
B D                   Megabat  ==
B D                   Dolphin  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D           Green seaturtle  ==
B D                       Cat  ==
                Weddell seal  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
  D       Collared flycatcher  ==
              Bactrian camel  ==
B D                    Alpaca  ==
               Big brown bat  ==
              Pacific walrus  ==
B D                     Panda  ==
B D                       Cow  ==
                Killer whale  ==
B D                       Dog  ==
            Black flying-fox  ==
B D          White rhinoceros  --
B D                     Horse  ==
        David's myotis (bat)  ==
B D                  Microbat  ==
B D                 Armadillo  ==

Alignment block 36 of 688 in window, 87726247 - 87726247, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  g
B D           Squirrel monkey  c
B D                  Bushbaby  c
           Chinese tree shrew  a
B D                  Squirrel  a
                 Prairie vole  a
B D                    Rabbit  a
B D                  Elephant  c
B D                   Manatee  c
B D                    Tenrec  g
                     Aardvark  c
              Golden hamster  =
B D                     Mouse  =
B D                      Pika  =
B D                Coelacanth  =
B D              Atlantic cod  =
            Cape golden mole  =
B D                       Pig  =
B D                   Megabat  =
B D                   Dolphin  =
                 Spotted gar  =
B D               Stickleback  =
          Southern platyfish  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                 Tetraodon  =
B D                   Chicken  =
  D              Mallard duck  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
    Mexican tetra (cavefish)  =
B D                 Zebrafish  =
B D                    Medaka  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
         Princess of Burundi  =
B D              Nile tilapia  =
  D            Painted turtle  =
B D                Budgerigar  =
B D                   Opossum  =
B D            Naked mole-rat  =
  D               Rock pigeon  =
B D       Medium ground finch  =
B D                    Lizard  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D           Green seaturtle  =
B D                       Cat  =
                Weddell seal  =
  D  Chinese softshell turtle  =
B D                   Ferret   =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
  D       Collared flycatcher  =
              Bactrian camel  =
B D                    Alpaca  =
               Big brown bat  =
              Pacific walrus  =
B D                     Panda  =
B D                       Cow  =
                Killer whale  =
B D                       Dog  =
            Black flying-fox  =
B D          White rhinoceros  -
B D                     Horse  =
        David's myotis (bat)  =
B D                  Microbat  =
B D                 Armadillo  =

Inserts between block 36 and 37 in window
                    Aardvark 14bp

Alignment block 37 of 688 in window, 87726248 - 87726261, 14 bps 
B D                     Human  gagtagg---tgtgc-ac
B D                     Chimp  gagtagg---tgtgc-ac
B D                   Gorilla  gagtagg---tgtgc-ac
B D                 Orangutan  gagaagg---tgtgc-ac
B D                    Gibbon  gagaagg---tgtgc-ac
B D                    Rhesus  gaggagg---tgtgc-ac
B D       Crab-eating macaque  gaggagt---tgtgc-ac
B D                    Baboon  gaggagt---tgtgc-ac
B D              Green monkey  gaggagt---tgtgc-ac
B D                  Marmoset  gaggagg---tgtgc-at
B D           Squirrel monkey  gaggagg---tgtgc-ac
B D                  Bushbaby  aaggaga---tggga-gc
           Chinese tree shrew  aaaaaag---gctgctac
B D                  Squirrel  aggacaa---ggtct-ag
                 Prairie vole  gagacgccttgctgc-ac
B D                    Rabbit  cggggcagtgggggc-ag
B D                   Dolphin  -----------------c
                 Killer whale  -----------------c
             Black flying-fox  -----------------c
B D                  Elephant  gaggcgc---ctggc-gc
B D                   Manatee  aaggcgg---ccggc-gc
B D                    Tenrec  tgggcag---ccggc-at
              Golden hamster  ==================
B D                     Mouse  ==================
B D                      Pika  ==================
B D                Coelacanth  ==================
                    Aardvark  ==================
B D              Atlantic cod  ==================
            Cape golden mole  ==================
B D                       Pig  ==================
B D                   Megabat  ==================
                 Spotted gar  ==================
B D               Stickleback  ==================
          Southern platyfish  ==================
      Yellowbelly pufferfish  ==================
B D                      Fugu  ==================
B D                 Tetraodon  ==================
B D                   Chicken  ==================
  D              Mallard duck  ==================
          Tibetan ground jay  ==================
B D               Zebra finch  ==================
  D    White-throated sparrow  ==================
    Mexican tetra (cavefish)  ==================
B D                 Zebrafish  ==================
B D                    Medaka  ==================
         Pundamilia nyererei  ==================
                 Zebra mbuna  ==================
       Burton's mouthbreeder  ==================
         Princess of Burundi  ==================
B D              Nile tilapia  ==================
  D            Painted turtle  ==================
B D                Budgerigar  ==================
B D                   Opossum  ==================
B D            Naked mole-rat  ==================
  D               Rock pigeon  ==================
B D       Medium ground finch  ==================
B D                    Lizard  ==================
  D          Peregrine falcon  ==================
  D              Saker falcon  ==================
  D           Green seaturtle  ==================
B D                       Cat  ==================
                Weddell seal  ==================
  D  Chinese softshell turtle  ==================
B D                   Ferret   ==================
               Domestic goat  ==================
B D                     Sheep  ==================
            Tibetan antelope  ==================
  D       Collared flycatcher  ==================
              Bactrian camel  ==================
B D                    Alpaca  ==================
               Big brown bat  ==================
              Pacific walrus  ==================
B D                     Panda  ==================
B D                       Cow  ==================
B D                       Dog  ==================
B D          White rhinoceros  ------------------
B D                     Horse  ==================
        David's myotis (bat)  ==================
B D                  Microbat  ==================
B D                 Armadillo  ==================

Inserts between block 37 and 38 in window
B D                  Dolphin 1bp
                Killer whale 1bp
            Black flying-fox 13bp

Alignment block 38 of 688 in window, 87726262 - 87726263, 2 bps 
B D                     Human  ca
B D                     Chimp  ca
B D                   Gorilla  ca
B D                 Orangutan  ca
B D                    Gibbon  ca
B D                    Rhesus  ca
B D       Crab-eating macaque  ca
B D                    Baboon  ca
B D              Green monkey  ca
B D                  Marmoset  ca
B D           Squirrel monkey  ca
B D                  Bushbaby  ga
           Chinese tree shrew  aa
B D                  Squirrel  aa
                 Prairie vole  ca
B D                    Rabbit  ca
B D                  Elephant  ga
B D                   Manatee  ga
B D                    Tenrec  tc
                     Aardvark  ga
              Golden hamster  ==
B D                     Mouse  ==
B D                      Pika  ==
B D                Coelacanth  ==
B D              Atlantic cod  ==
            Cape golden mole  ==
B D                       Pig  ==
B D                   Megabat  ==
B D                   Dolphin  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D           Green seaturtle  ==
B D                       Cat  ==
                Weddell seal  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
  D       Collared flycatcher  ==
              Bactrian camel  ==
B D                    Alpaca  ==
               Big brown bat  ==
              Pacific walrus  ==
B D                     Panda  ==
B D                       Cow  ==
                Killer whale  ==
B D                       Dog  ==
            Black flying-fox  ==
B D          White rhinoceros  --
B D                     Horse  ==
        David's myotis (bat)  ==
B D                  Microbat  ==
B D                 Armadillo  ==

Inserts between block 38 and 39 in window
                    Aardvark 53bp

Alignment block 39 of 688 in window, 87726264 - 87726264, 1 bps 
B D                     Human  -g
B D                     Chimp  -g
B D                   Gorilla  -g
B D                 Orangutan  -g
B D                    Gibbon  -g
B D                    Rhesus  -g
B D       Crab-eating macaque  -g
B D                    Baboon  -g
B D              Green monkey  -g
B D                  Marmoset  -g
B D           Squirrel monkey  -g
B D                  Bushbaby  -c
           Chinese tree shrew  -c
B D                  Squirrel  -g
                 Prairie vole  -g
B D                    Rabbit  -g
B D                       Pig  -g
             Black flying-fox  -g
B D                  Elephant  c-
B D                   Manatee  c-
B D                    Tenrec  t-
              Golden hamster  ==
B D                     Mouse  ==
B D                      Pika  ==
B D                Coelacanth  ==
                    Aardvark  ==
B D              Atlantic cod  ==
            Cape golden mole  ==
B D                   Megabat  ==
B D                   Dolphin  ==
                 Spotted gar  ==
B D               Stickleback  ==
          Southern platyfish  ==
      Yellowbelly pufferfish  ==
B D                      Fugu  ==
B D                 Tetraodon  ==
B D                   Chicken  ==
  D              Mallard duck  ==
          Tibetan ground jay  ==
B D               Zebra finch  ==
  D    White-throated sparrow  ==
    Mexican tetra (cavefish)  ==
B D                 Zebrafish  ==
B D                    Medaka  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
  D            Painted turtle  ==
B D                Budgerigar  ==
B D                   Opossum  ==
B D            Naked mole-rat  ==
  D               Rock pigeon  ==
B D       Medium ground finch  ==
B D                    Lizard  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
  D           Green seaturtle  ==
B D                       Cat  ==
                Weddell seal  ==
  D  Chinese softshell turtle  ==
B D                   Ferret   ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
  D       Collared flycatcher  ==
              Bactrian camel  ==
B D                    Alpaca  ==
               Big brown bat  ==
              Pacific walrus  ==
B D                     Panda  ==
B D                       Cow  ==
                Killer whale  ==
B D                       Dog  ==
B D          White rhinoceros  --
B D                     Horse  ==
        David's myotis (bat)  ==
B D                  Microbat  ==
B D                 Armadillo  ==

Inserts between block 39 and 40 in window
B D                 Squirrel 11bp
                Prairie vole 7bp
B D                   Rabbit 7bp
B D                      Pig 60bp
            Black flying-fox 2bp

Alignment block 40 of 688 in window, 87726265 - 87726285, 21 bps 
B D                     Human  ccctggcaacgagagcgtct---a
B D                     Chimp  ccctggcaacgagagcgtct---a
B D                   Gorilla  ccctggcaacgagagcgtct---a
B D                 Orangutan  ccctggcaacgagagcgtct---g
B D                    Gibbon  ccctggcaacgagagcgtct---g
B D                    Rhesus  ccctggcaacgagagcgtct---g
B D       Crab-eating macaque  ccctggcaacgagagcgtct---g
B D                    Baboon  ccctggcaacgagagcgtct---g
B D              Green monkey  ccctggcaacgggagcgtct---g
B D                  Marmoset  ccccgggaacgagaacgtgt---g
B D           Squirrel monkey  ccccgggaaccagagcgtgt---g
B D                  Bushbaby  cccagggagcgagaacgtgt---g
           Chinese tree shrew  ctccaggaagaagagcatct---g
B D                  Squirrel  ccccaggaacaagagcatct---g
                 Prairie vole  cctcaggaatgggaatatca---g
B D                    Rabbit  ccgtgggaac-ggagca-------
B D                   Dolphin  ccccgggaaccagcggg-------
                 Killer whale  ccccgggaaccagcggg-------
B D          White rhinoceros  ccccgggaaccagcgcggc-----
             Black flying-fox  ccccaggaacgagagagtct---g
B D                  Elephant  -cccaggg--tgcagtgtct----
B D                   Manatee  -ccccgggactagagagtct----
B D                    Tenrec  -ttacgggacgagaattccgccg-
              Golden hamster  ========================
B D                     Mouse  ========