Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 1514 in window, 98247686 - 98247701, 16 bps 
B D                   Human  gg--------------------------------tc-ttt--g---------------------------
B D                   Chimp  gg--------------------------------tc-ttt--g---------------------------
B D                 Gorilla  gg--------------------------------tc-ttt--g---------------------------
B D               Orangutan  gg--------------------------------tc-ttt--g---------------------------
B D                  Gibbon  gg--------------------------------tc-ttt--g---------------------------
B D                  Rhesus  gg--------------------------------tc-ttt--g---------------------------
B D     Crab-eating macaque  gg--------------------------------tc-ttt--g---------------------------
B D                  Baboon  gg--------------------------------tc-ttt--g---------------------------
B D            Green monkey  gg--------------------------------tc-ttt--g---------------------------
B D                Marmoset  gg--------------------------------tc-ttt--g---------------------------
B D         Squirrel monkey  gg--------------------------------tc-ttt--g---------------------------
B D                Bushbaby  tg--------------------------------tc-ttt--g---------------------------
         Chinese tree shrew  tg--------------------------------tg-tct--g---------------------------
B D                Squirrel  gg--------------------------------tc-ttt--g---------------------------
     Lesser Egyptian jerboa  gg--------------------------------cc-ttt--g---------------------------
               Prairie vole  ag--------------------------------tc-ttt--g---------------------------
B D         Chinese hamster  gg--------------------------------tc-ttt--g---------------------------
             Golden hamster  gg--------------------------------tc-ttt--g---------------------------
B D                   Mouse  gg--------------------------------cc-ttt--g---------------------------
B D                     Rat  gg--------------------------------tc-tct--g---------------------------
B D          Naked mole-rat  tg--------------------------------gc-ttt--a---------------------------
B D              Guinea pig  tg--------------------------------gc-ttt--a---------------------------
                 Chinchilla  tg--------------------------------gt-gct--g---------------------------
           Brush-tailed rat  tg--------------------------------gc--tt--a---------------------------
B D                  Rabbit  tt--------------------------------ttcttt--g---------------------------
B D                    Pika  tg--------------------------------tt-ttc--a---------------------------
B D                     Pig  cg--------------------------------tc-ttt--g---------------------------
B D                  Alpaca  tg--------------------------------tc-tct--c---------------------------
             Bactrian camel  tg--------------------------------tc-tct--c---------------------------
B D                 Dolphin  cg--------------------------------tc-ttt--g---------------------------
               Killer whale  tg--------------------------------tc-ttt--g---------------------------
           Tibetan antelope  tg---------------------------------c-ttt--g---------------------------
B D                     Cow  tg---------------------------------c-ttt--g---------------------------
B D                   Sheep  tg---------------------------------c-ttt--g---------------------------
              Domestic goat  tg---------------------------------c-ttt--g---------------------------
B D                   Horse  ta--------------------------------tc-ttt--g---------------------------
B D        White rhinoceros  tg--------------------------------tc-ttt--g---------------------------
B D                     Cat  tg--------------------------------tc-ttt--g---------------------------
B D                     Dog  tg--------------------------------cc-ttt--g---------------------------
B D                 Ferret   cg--------------------------------tc-att--a---------------------------
B D                   Panda  tg--------------------------------tc-ttt--g---------------------------
             Pacific walrus  ag--------------------------------tc-ttt--g---------------------------
               Weddell seal  tg--------------------------------tc-ttt--g---------------------------
           Black flying-fox  tg--------------------------------tc-ttt--a---------------------------
B D                 Megabat  tg--------------------------------tc-ttt--a---------------------------
              Big brown bat  tg--------------------------------tc-ttt--g---------------------------
       David's myotis (bat)  tg--------------------------------tc-tct--g---------------------------
B D                Microbat  tg--------------------------------tc-ttt--g---------------------------
B D                Hedgehog  tgagtagtatgtgtattccgcccccccccccatcac-tct--ggccaccggttaatgtgctgggaactac
B D                   Shrew  cg--------------------------------gc-ccg--g---------------------------
            Star-nosed mole  tg--------------------------------tc-tct--g---------------------------
B D                Elephant  tg--------------------------------tc-ttt--g---------------------------
        Cape elephant shrew  gg--------------------------------tc-tctgag---------------------------
B D                 Manatee  tg--------------------------------tg-ttt--g---------------------------
           Cape golden mole  tg--------------------------------tc-ctt--g---------------------------
B D                  Tenrec  tg--------------------------------------------------------------------
                   Aardvark  tg--------------------------------tc-tct--g---------------------------
B D               Armadillo  tg--------------------------------tc-ttt--g---------------------------
B D                 Wallaby  tg--------------------------------tt-cct--a---------------------------
B D                Platypus  tc--------------------------------tc-tcc--g---------------------------
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================
B D               Zebrafish  ======================================================================
B D              Coelacanth  ======================================================================
               Spotted gar  ======================================================================
       Pundamilia nyererei  ======================================================================
     Burton's mouthbreeder  ======================================================================
  D         Green seaturtle  ======================================================================
  D     Collared flycatcher  ======================================================================
B D           X. tropicalis  ======================================================================
B D              Budgerigar  ======================================================================
  D           Scarlet macaw  ======================================================================
B D     Medium ground finch  ======================================================================
  D  White-throated sparrow  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
B D                  Turkey  ======================================================================
B D                 Chicken  ======================================================================
B D                  Lizard  ======================================================================
B D             Zebra finch  ======================================================================
  D          Painted turtle  ======================================================================
        Tibetan ground jay  ======================================================================
  D                  Parrot  ======================================================================
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
  D             Rock pigeon  ======================================================================
  D            Mallard duck  ======================================================================
B D      American alligator  ======================================================================

                      Human  ----------------tagcagt---c-----
                      Chimp  ----------------tagcagt---c-----
                    Gorilla  ----------------tagcagt---c-----
                  Orangutan  ----------------tagcagt---c-----
                     Gibbon  ----------------tagcagt---c-----
                     Rhesus  ----------------tagcagt---c-----
        Crab-eating macaque  ----------------tagcagt---c-----
                     Baboon  ----------------tagcagt---c-----
               Green monkey  ----------------tagcagt---c-----
                   Marmoset  ----------------tagcagt---c-----
            Squirrel monkey  ----------------tagcagt---c-----
                   Bushbaby  ----------------tagccgt---c-----
         Chinese tree shrew  ----------------tcgcagt---c-----
                   Squirrel  ----------------gagcagt---c-----
     Lesser Egyptian jerboa  ----------------tagcagt---c-----
               Prairie vole  ----------------t---------------
            Chinese hamster  ----------------tagcagt---c-----
             Golden hamster  ----------------tagcagt---c-----
                      Mouse  ----------------tggcagc---c-----
                        Rat  ----------------tagcagc---c-----
             Naked mole-rat  ----------------tagcagt---c-----
                 Guinea pig  ----------------tagcaat---c-----
                 Chinchilla  ----------------tagcagt---c-----
           Brush-tailed rat  ----------------cagcagt---c-----
                     Rabbit  ----------------tagcagt---c-----
                       Pika  ----------------tagcagt---c-----
                        Pig  ----------------tagcagt---c-----
                     Alpaca  ----------------tagcagt---c-----
             Bactrian camel  ----------------tagcagt---c-----
                    Dolphin  ----------------tagcagt---c-----
               Killer whale  ----------------tagcagt---c-----
           Tibetan antelope  ----------------tagcagt---c-----
                        Cow  ----------------tagcagt---c-----
                      Sheep  ----------------tagcagt---c-----
              Domestic goat  ----------------tagcagt---c-----
                      Horse  ----------------tagcagt---c-----
           White rhinoceros  ----------------tagcagt---c-----
                        Cat  ----------------tagctgt---c-----
                        Dog  ----------------tagctgt---c-----
                    Ferret   ----------------tagctgt---c-----
                      Panda  ----------------tagctgt---c-----
             Pacific walrus  ----------------tagctgt---c-----
               Weddell seal  ----------------tagctat---c-----
           Black flying-fox  ----------------aagcagt---c-----
                    Megabat  ----------------aagcagt---c-----
              Big brown bat  ----------------taacagt---c-----
       David's myotis (bat)  ----------------taacagt---c-----
                   Microbat  ----------------taacagt---c-----
                   Hedgehog  acagctgggcttcttcaagcagt---c-----
                      Shrew  ----------------agctagtccac-----
            Star-nosed mole  ----------------aagcagt---c-----
                   Elephant  ----------------tagc-ac---c-----
        Cape elephant shrew  ----------------cagc-gc---a-----
                    Manatee  ----------------tagcagc---c-----
           Cape golden mole  ----------------tagcggc---c-----
                     Tenrec  -----------------agcagc---c-----
                   Aardvark  ----------------tagcagc---c-----
                  Armadillo  ----------------tagcagc---t-----
                    Wallaby  ----------------gagcagt---t-----
                   Platypus  ----------------aagcacc---gagggc
        Princess of Burundi  ================================
               Nile tilapia  ================================
                  Tetraodon  ================================
                Zebra mbuna  ================================
                  Zebrafish  ================================
                 Coelacanth  ================================
                Spotted gar  ================================
        Pundamilia nyererei  ================================
      Burton's mouthbreeder  ================================
            Green seaturtle  ================================
        Collared flycatcher  ================================
              X. tropicalis  ================================
                 Budgerigar  ================================
              Scarlet macaw  ================================
        Medium ground finch  ================================
     White-throated sparrow  ================================
           Peregrine falcon  ================================
               Saker falcon  ================================
                     Turkey  ================================
                    Chicken  ================================
                     Lizard  ================================
                Zebra finch  ================================
             Painted turtle  ================================
         Tibetan ground jay  ================================
                     Parrot  ================================
            Tasmanian devil  ================================
                    Opossum  ================================
                Rock pigeon  ================================
               Mallard duck  ================================
         American alligator  ================================

Alignment block 2 of 1514 in window, 98247702 - 98247743, 42 bps 
B D                   Human  cataatgagcaact-tttattgg-----cattagg-gtgtcagtcct---gt
B D                   Chimp  cataatgagcaact-tttattgg-----cattagg-gtgtcagtcct---gt
B D                 Gorilla  cataatgagcaact-tttattgg-----cattagg-gtgtcagtcct---gt
B D               Orangutan  cataatgagcaacc-tttattgg-----cattagg-gtgtcagtcct---gt
B D                  Gibbon  cataatgagcaacc-tttattgg-----cattagg-gtgtctgtcct---gt
B D                  Rhesus  cataatgagcaacc-ttttttgg-----cattagg-gtgtcagtcct---gt
B D     Crab-eating macaque  cataatgagcaacc-ttttttgg-----cattagg-gtgtcagtcct---gt
B D                  Baboon  cataatgagcaacc-ttttttgg-----cattagg-gtgtcagtcct---gt
B D            Green monkey  cataatgagcaacctttttttgg-----cattagg-gtgccagtcct---gt
B D                Marmoset  cataatgaacaccc-tttattgg-----cattagg-gtgttagtcct---gt
B D         Squirrel monkey  cgtaatgagcaaca-tttattgg-----cattagg-gtgttagtcct---gt
B D                Bushbaby  tataatgaacaacc-tttattgg-----cattaag-acgtcagacct---gt
         Chinese tree shrew  cataatgagcaact-tttattgg-----tattaga-gtatcagatct---gt
B D                Squirrel  cacaatgagcaacc-tttattgg-----cattaggagtgtcagaact---at
     Lesser Egyptian jerboa  cataatgagcaacc-tttattgg-----tattagg-gtgtcacacctatgat
               Prairie vole  ---aatgagaaaac-tttattgg-----cattaga-----aagacct---ag
B D         Chinese hamster  cacaatgagcaaac-tttattgg-----cattatg-----aagaccc---ag
             Golden hamster  cacaatgagcaaac-tttattgg-----c--tata-----aagacct---ag
B D                   Mouse  catagtgagcaacc-tttgttgg-----cattat------aagacct---ag
B D                     Rat  cataatgagcagcc-tttattgg------attat------aagacct---ag
B D          Naked mole-rat  cataacgagaaa-t-tttattga-----cattagc-atgtcagattt---ac
B D              Guinea pig  tataatgagaaact-tttattg------caataat-gtgtcagactt---at
                 Chinchilla  cataatgagaaact-tttattga-----cattaag-gtatcaaactt---aa
           Brush-tailed rat  cataatgagaacct-tttattga-----cattaag-gtggcaggctt---at
B D                  Rabbit  cataatgagcaacc-tttattgatgatggggggag-gggtcatacct---gt
B D                    Pika  cataatga--------------------cagtagg-gggtcacacct---at
B D                     Pig  cacagtgagcggtc-tttattgg-----cattagg-gcgtcaaacct---gt
B D                  Alpaca  catagtgagcaatg-tttattgg-----catcagg-gtgtcagacct---gt
             Bactrian camel  catagtgagcaacg-tttattgg-----catcagg-gtgtcagacct---gt
B D                 Dolphin  catagtgagcaacc-tttattgg-----cattagg-gcatcagacct---gt
               Killer whale  catagtgagcaacc-tttattgg-----cattagg-gcatcagacct---gt
           Tibetan antelope  catagtgagcaacc-tttattgg-----catgagg-gcgtcagacct---gt
B D                     Cow  catagtgagcaacc-tttattgg-----catgaga-gcgtcagacct---gt
B D                   Sheep  catagtgagcaacc-tttattgg-----catgagg-gcgtcagacct---gt
              Domestic goat  catagtgagcaacc-tttattgg-----catgagg-gcgtcagacct---gt
B D                   Horse  catagtgagcaacc-tttattgg-----cattagg-atgtcagacct---gt
B D        White rhinoceros  catagtgagcaacc-tttatt-g-----cattagg-gtgtcagacct---gt
B D                     Cat  catactgagcaacc-tttattgg-----cactagg-gcatcagacct---gt
B D                     Dog  catagtgagcaacc-tttattgg-----cattagg-gtgtcagacct---gt
B D                 Ferret   catagtgagcaacc-tttattgg-----gattaga-gcatcaaacct---gt
B D                   Panda  catagtgagcaacc-tttattgg-----cattagg-gcgtcagacct---gt
             Pacific walrus  catagtgagcaacc-tttattgg-----cattagg-gcgtcagacct---gt
               Weddell seal  catagtgagcaacc-tttattgg-----cattagg-gcgtcagacct---gt
           Black flying-fox  catagtgagcaacc-tttattgg-----cattaga-atgtcagatct---gt
B D                 Megabat  catagtgagcaacc-tttattgg-----cattaga-gtgtcagatct---gt
              Big brown bat  aatagtgaaaaacc-tttattgg-----cactggg-gtgtcagacct---gt
       David's myotis (bat)  aatagtgaaaaacc-tttattgg-----cactggg-ctgtcagacct---gt
B D                Microbat  aatagtgaaaaacc-tttattgg-----cactggg-ctgtcagacct---gt
B D                Hedgehog  tgtagtgagaaacc-tttattgc-----ca-------agttagacgt---gt
B D                   Shrew  tgtgaggaa------tctgttgg-----cattcag-gtgtcagacct---gg
            Star-nosed mole  tgtgaggagcagcc-ttccttgc-----tattt-g-gtgtcagaccc---at
B D                Elephant  catgatggacaacc-tttattgg-----cattcga-gtgtcagacct---gt
        Cape elephant shrew  gagggtgg-----t-tttgttga-----cagtcaa-gtg-------------
B D                 Manatee  catgatggacaatc-tttattaa-----cattcaa-gggtcagacct---gt
           Cape golden mole  catgataggtaacc-tttattgg-----cattcaa-gtgtcagatct---ga
B D                  Tenrec  catgatgagcaacc-tttattgg-----cattcga-gtatcagacct---gc
                   Aardvark  catggtgggcaaca-tttattgg-----cattcga-ccatcagacct---at
B D               Armadillo  catattgcacaacc-tttattat-----cattagg-atgtcagatct---g-
B D                Platypus  ---cgggaggggcg-ggggccgg-----ggggagg-gtc-------------
       Princess of Burundi  ====================================================
B D            Nile tilapia  ====================================================
B D               Tetraodon  ====================================================
               Zebra mbuna  ====================================================
B D               Zebrafish  ====================================================
B D              Coelacanth  ====================================================
               Spotted gar  ====================================================
       Pundamilia nyererei  ====================================================
     Burton's mouthbreeder  ====================================================
  D         Green seaturtle  ====================================================
  D     Collared flycatcher  ====================================================
B D           X. tropicalis  ====================================================
B D              Budgerigar  ====================================================
  D           Scarlet macaw  ====================================================
B D     Medium ground finch  ====================================================
  D  White-throated sparrow  ====================================================
  D        Peregrine falcon  ====================================================
  D            Saker falcon  ====================================================
B D                  Turkey  ====================================================
B D                 Chicken  ====================================================
B D                  Lizard  ====================================================
B D             Zebra finch  ====================================================
  D          Painted turtle  ====================================================
        Tibetan ground jay  ====================================================
  D                  Parrot  ====================================================
B D         Tasmanian devil  ====================================================
B D                 Wallaby  ----------------------------------------------------
B D                 Opossum  ====================================================
  D             Rock pigeon  ====================================================
  D            Mallard duck  ====================================================
B D      American alligator  ====================================================

Inserts between block 2 and 3 in window
B D                   Pika 343bp

Alignment block 3 of 1514 in window, 98247744 - 98247767, 24 bps 
B D                   Human  aaggat-catcac------t--t-aagtgtgtct
B D                   Chimp  aaggat-catcac------t--t-aagtgtgtct
B D                 Gorilla  aaggat-catcac------t--t-aagtgtgtct
B D               Orangutan  aaggat-catcac------t--t-aagtgtgtct
B D                  Gibbon  aaggat-catcac------t--t-aagtgtgtct
B D                  Rhesus  aaggat-catcac------t--a-aagtttgtct
B D     Crab-eating macaque  aaggat-catcac------t--a-aagtttgtct
B D                  Baboon  aaggat-catcac------t--a-aagtttgtct
B D            Green monkey  aaggat-catcac------t--a-aagtttgtct
B D                Marmoset  taggat-catcac------c--t-aagtgtgtct
B D         Squirrel monkey  aaggat-catcac------c--t-aagtgtgtct
B D                Bushbaby  acagat--atctc------c--t-aagtgtgtct
         Chinese tree shrew  aagggc-tatctc------t--t-aagtgtgtta
B D                Squirrel  aaagat-catctc------tttt-aagtgtgtgt
     Lesser Egyptian jerboa  aaggat-catccc------t------ttgtgtgt
               Prairie vole  aaggat-catctg------t------gcgcatgt
B D         Chinese hamster  aagggt-catctg------t------gggcatgt
             Golden hamster  aaggct-catctg------t------gtgcatgt
B D                   Mouse  aaggat-catctg------t------gtgtatgt
B D                     Rat  aaga---catccg------t------gtgtacgt
B D          Naked mole-rat  aaggat-tatctctttaagt------gtgt--gt
B D              Guinea pig  aaag-a-tatctc------t------gtgt--gt
                 Chinchilla  aagg-t-catctc------t------gtgt----
           Brush-tailed rat  aaggat-catctc------t------gtgt----
B D                  Rabbit  acggat-tatctt------t--a-aagtgtgtct
B D                    Pika  aaggat-catttt------t--t-aaatgtttct
B D                     Pig  gaggat-tatc-c------c--c-atgtgtgtcg
B D                  Alpaca  aaggat-catctc------t--c-aagtgtgtct
             Bactrian camel  aaggat-catctc------t--g-aagtgtgtct
B D                 Dolphin  aaggat-catctc------t--c-aagtgtgtct
               Killer whale  aaggat-catctc------t--c-aagtgtgtct
           Tibetan antelope  gaagat-catctc------t--c-aagtgtgtcc
B D                     Cow  gaagat-catctc------t--g-cagtgtgtcc
B D                   Sheep  gaagat-catctc------t--c-aagtgtgtcc
              Domestic goat  gaagat-catctc------t--c-aagtgtgtcc
B D                   Horse  aaggat-catctt------t--t-aag-gtgtct
B D        White rhinoceros  aaggat-catctt------t--t-aagtgtgtct
B D                     Cat  aaggat-catctc------t--taacgtgtatct
B D                     Dog  aagaat-catctc------t--t-atatgtgtct
B D                 Ferret   aaaaat-catttc------t--t-atgtgtatct
B D                   Panda  aaagat-catctc------t--t-atgtgtgtct
             Pacific walrus  aaagat-catctc------t--t-atgtgtgtct
               Weddell seal  aaagat-catctc------t--t-acatgtgtct
           Black flying-fox  aaggat-catctc------t--t-aagtttgtct
B D                 Megabat  aaggat-catctc------t--t-aagtttgtct
              Big brown bat  aaggat-catctt------t--t-aagtgtgtct
       David's myotis (bat)  aaggat-catctt------t--t-aagtgtgtct
B D                Microbat  aaggat-catctt------t--t-aagtgtgtct
B D                Hedgehog  gaggaa-c-----------------agcatgttc
B D                   Shrew  aatgatccgtctc------t--t-aagtgtgtct
            Star-nosed mole  aaagat-cacctt------t--g-aggtgtgtct
B D                Elephant  aaaggt-catctc------t--t-aaatgtgtct
        Cape elephant shrew  -----------tc------t--t-----------
B D                 Manatee  aaggct-cat-cc------t--t-aaatgtgtct
           Cape golden mole  aaggat-cctctc------t--t-aagtgtatct
B D                  Tenrec  aaggat-catctc------t--t--agtgtgcct
                   Aardvark  aaggat-cagctc------t--g-aagtgtgtcg
B D               Armadillo  aaggat-catctc------t--t-taatgtgtct
B D                Platypus  gaggaa-c----c------c--g-gagcgtctct
       Princess of Burundi  ==================================
B D            Nile tilapia  ==================================
B D               Tetraodon  ==================================
               Zebra mbuna  ==================================
B D               Zebrafish  ==================================
B D              Coelacanth  ==================================
               Spotted gar  ==================================
       Pundamilia nyererei  ==================================
     Burton's mouthbreeder  ==================================
  D         Green seaturtle  ==================================
  D     Collared flycatcher  ==================================
B D           X. tropicalis  ==================================
B D              Budgerigar  ==================================
  D           Scarlet macaw  ==================================
B D     Medium ground finch  ==================================
  D  White-throated sparrow  ==================================
  D        Peregrine falcon  ==================================
  D            Saker falcon  ==================================
B D                  Turkey  ==================================
B D                 Chicken  ==================================
B D                  Lizard  ==================================
B D             Zebra finch  ==================================
  D          Painted turtle  ==================================
        Tibetan ground jay  ==================================
  D                  Parrot  ==================================
B D         Tasmanian devil  ==================================
B D                 Wallaby  ----------------------------------
B D                 Opossum  ==================================
  D             Rock pigeon  ==================================
  D            Mallard duck  ==================================
B D      American alligator  ==================================

Inserts between block 3 and 4 in window
B D               Elephant 1bp
B D                Manatee 1bp
          Cape golden mole 1bp
B D                 Tenrec 1bp
                  Aardvark 1bp
B D              Armadillo 1bp

Alignment block 4 of 1514 in window, 98247768 - 98247807, 40 bps 
B D                   Human  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D                   Chimp  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D                 Gorilla  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D               Orangutan  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D                  Gibbon  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D                  Rhesus  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D     Crab-eating macaque  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D                  Baboon  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D            Green monkey  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D                Marmoset  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D         Squirrel monkey  cagtggagaaa-agat----caa-gaatcatgt--caagaagaccatg
B D                Bushbaby  cagtggacaaa-agct----caa-gaatcatgt--caagaagaccacg
         Chinese tree shrew  ccatggggaaa-aggt----aagcgactca-----cgagacgacagtg
B D                Squirrel  cagtggagaaa-agat----gaa-gaatcatgt-ccaagaagaccttg
     Lesser Egyptian jerboa  cagtggagaaa-aggt----caa-gt--catgt-ccaagaagacactg
               Prairie vole  cagtagagaaa-aggt----cca-ga--catgc-cctagaagaccctg
B D         Chinese hamster  cagtggagaaa-caa-----cca-gg--catgc-ccaagaagaccctg
             Golden hamster  cagtggagaaa-aga-----cca-ga--catgc-ccaagaagaccc-g
B D                   Mouse  cagtggagaaa-aggt----cca-gg--catgc-cctggaagactc-c
B D                     Rat  ccatggataaa-aggt----cca-gg--catgc-ccagaaagactt-c
B D          Naked mole-rat  cagttgagaaa-agatca--aga-gt--catgt-ttaagaaaaccatg
B D              Guinea pig  cagtacagaga-agat------g-aa--catgt-ttaagaagaccatg
                 Chinchilla  caggagagaaa-aaac------a-gt--catgt-ttaagaagaccatg
           Brush-tailed rat  ------------------------at--cacgt-tgaagaagac--tg
B D                  Rabbit  caaaggagaaa-agat----caa-gactcgtgt-ccaa---gaccatg
B D                    Pika  caaaggaaaaagaaat----caa-gaatcatgt-ccaagacgaccacg
B D                     Pig  aagtggaga-a-agat----gaa-ggcttatgt-ctgagatgaccatg
B D                  Alpaca  aagtggagaaa-ggat----taa-gaatcatgt-ccaagaagaccgtg
             Bactrian camel  aagtggagaaa-ggat----taa-gaatcatgt-ccaagaagaccgtg
B D                 Dolphin  tagtggagaca-ggat----taa-gaatcatgt-ccaggaagaccatg
               Killer whale  tagtggagaca-ggat----taa-gaatcatgt-ccaggaagaccatg
           Tibetan antelope  aagtggagaca-ggat----taa-gaatcacgt-ccaagaagatcata
B D                     Cow  aagtggagaca-ggat----taa-gaatcacat-ccaagaagatcata
B D                   Sheep  aagtggagaca-ggat----taa-gaatcacgt-ccaagaagatcata
              Domestic goat  aagtggagaca-ggat----taa-gaatcacgt-ccaagaagatcata
B D                   Horse  aagtggaataa-aaat----taa-gaatcatgt-ccaagaagatcatg
B D        White rhinoceros  aaatggagaaa-agat----taa-gaatcatgt-ccaagaagaccatg
           Black flying-fox  aagtagagaag-agat----taa-gaattatgt-ccaggaagaccatg
B D                 Megabat  aagtagagaag-agat----taa-gaattatgt-ccaggaagaccatg
              Big brown bat  aagtggagaaa-agat----taa-gaatcatgt-ccaagaagaccctg
       David's myotis (bat)  aagtggagaaa-agat----taa-gaatcatgt-ccaagaagaccctg
B D                Microbat  aagtggagaaa-agat----taa-gaatcatgt-ccaagaataccctg
B D                Hedgehog  aa----agaga-tcat--------ggatc-------------------
B D                   Shrew  aagtggggaga-gaac--------caggcccga------gagacctgg
            Star-nosed mole  aagtggagaaa-aaat--------gaatcacac--------------g
B D                Elephant  a-ggggagaaa-agat----taa-gaatcattt-ccaagaagaccaca
        Cape elephant shrew  ---gggagaac-agac----ttg-ggatcctct-ccaagaagaccatg
B D                 Manatee  ---gggagaaa-agat----taa-gaatcattt-ccaagaaaaccatg
           Cape golden mole  a--gggagaaa-agattaagtaa-gagtcattt-ccaagaagatcatg
B D                  Tenrec  ----ggagaaa-agatc---taa-gagtcattt-ccaagaagaccagg
                   Aardvark  tcaggggagaa-agat-------------------------gaccatg
B D               Armadillo  agtagaagaaa-agat----tga-aaatcattt-ctaggaagaccatg
B D                Platypus  -----ccgcca-gggc----tgg-gagttagctgctcagacaatccca
B D                   Panda  ------------------------------------------------
B D                     Dog  ------------------------------------------------
B D                 Ferret   ------------------------------------------------
B D                     Cat  ------------------------------------------------
            Pacific walrus  ------------------------------------------------
       Princess of Burundi  ================================================
B D            Nile tilapia  ================================================
B D               Tetraodon  ================================================
               Zebra mbuna  ================================================
B D               Zebrafish  ================================================
B D              Coelacanth  ================================================
               Spotted gar  ================================================
       Pundamilia nyererei  ================================================
     Burton's mouthbreeder  ================================================
  D         Green seaturtle  ================================================
  D     Collared flycatcher  ================================================
B D           X. tropicalis  ================================================
B D              Budgerigar  ================================================
  D           Scarlet macaw  ================================================
B D     Medium ground finch  ================================================
  D  White-throated sparrow  ================================================
  D        Peregrine falcon  ================================================
  D            Saker falcon  ================================================
B D                  Turkey  ================================================
B D                 Chicken  ================================================
B D                  Lizard  ================================================
B D             Zebra finch  ================================================
  D          Painted turtle  ================================================
        Tibetan ground jay  ================================================
  D                  Parrot  ================================================
B D         Tasmanian devil  ================================================
B D                 Wallaby  ------------------------------------------------
B D                 Opossum  ================================================
  D             Rock pigeon  ================================================
  D            Mallard duck  ================================================
              Weddell seal  ------------------------------------------------
B D      American alligator  ================================================

Alignment block 5 of 1514 in window, 98247808 - 98247834, 27 bps 
B D                   Human  ggg-tttta--ttccac--ttgagcaagagca
B D                   Chimp  ggg-tttta--ttccac--ttgagcaagagca
B D                 Gorilla  ggg-tttta--ttccac--ttgagcaagagca
B D               Orangutan  ggg-tttta--ttctac--ttgagcaagagca
B D                  Gibbon  ggg-tttta--ttctac--ttgagcaagagca
B D                  Rhesus  ggg-tttta--ttctac--ttgagcgagag-a
B D     Crab-eating macaque  ggg-tttta--ttctac--ttgagtgagag-a
B D                  Baboon  ggg-tttta--ttctac--ttgagcgagag-a
B D            Green monkey  ggg-tttta--ttctac--ttgagcgagag-a
B D                Marmoset  ggg-tttta--ttctcc--ttgagcgagaaca
B D         Squirrel monkey  ggg-tttta--ttctcc--ttgagcgagaaca
B D                Bushbaby  gga---caa--tactac--ctgagcaagagca
         Chinese tree shrew  gga-tgttc--tgctac--ctgagca--aaca
B D                Squirrel  gtattttta--taccac--ctgagcaacagca
     Lesser Egyptian jerboa  gga-tttta--taccac--ctgagcaagagca
               Prairie vole  ggg-tctta--tatcac--ctgagcaagaatg
B D         Chinese hamster  ggg-tctta--caccac--ctgagcaagaatg
             Golden hamster  ggg-tctca--cacctc--ctgagcaagaatg
B D                   Mouse  agg-tctta--taccac--ctgagcaagaaca
B D                     Rat  aga-tctta--taccag--ttgagcaaaagca
B D          Naked mole-rat  gga-tttta--caccac--ctaaccaagagca
B D              Guinea pig  gga--ttta--taccac--ctaactaagagca
                 Chinchilla  gga-tttta--taccac--ctac-taagagca
           Brush-tailed rat  gga-cttta--taccac--ctaagcaagagca
B D                  Rabbit  gaa-ttata--tactac--ctgagcaagagca
B D                    Pika  gaa-tttta-----tac--ctgagcaagagca
B D                     Pig  gga-ttcga--tccca---ctgagcaagggcc
B D                  Alpaca  gaa-ttttg--tatcac--ctgagcaagggca
             Bactrian camel  gaa-ttttg--tatcac--ctgagcaagggca
B D                 Dolphin  gga-tttta--taccat--ctgagcaagggcc
               Killer whale  gga-tttta--taccat--ctgagcaagggcc
           Tibetan antelope  gat-cttaa--cctcac--ctgagcaagagca
B D                     Cow  gct-cttaa--cctcac--ctgagcaagagca
B D                   Sheep  gat-cttaa--cctcac--ctgagcaagagca
              Domestic goat  gat-cttaa--cctcac--ctgagcaagagca
B D                   Horse  gga-tttta------gt--atgagtaagagca
B D        White rhinoceros  gga-tttta--tactac--ctgagcaagagca
           Black flying-fox  ggg-tttta--tactac--ttgagcaagacca
B D                 Megabat  ggg-tttta--tactac--ttgagcaagacca
              Big brown bat  gga-ttgta--tactac--ctgagcaagagca
       David's myotis (bat)  gga-tttta--tactac--ctgagcaagagca
B D                Microbat  gga-tttta--tactac--ctgagcaaaagca
B D                Hedgehog  ------tta--caccac--ctgaacaagagca
B D                   Shrew  ggg-gtttgtctactcc--ctaagccagagcg
            Star-nosed mole  ggc-gttta--tactac--ctgcgcaagagcg
B D                Elephant  gga-tttta--tactac--ctgagcaagagca
        Cape elephant shrew  gct-tttaa--tactat--ctgagcgagagca
B D                 Manatee  gga-tttta--tactac--ctgagcaagagca
           Cape golden mole  gga-tttta--tactac--ctgagcaagagca
B D                  Tenrec  ggg-tttta--tactac--ctgagcaagagca
                   Aardvark  g-a-tttta--tactcc--ctgagcaagagca
B D               Armadillo  gga-attta--tatttc--ctgagcaagagca
B D                 Wallaby  ggg-tttca--tgccac--ctgtg--------
B D                Platypus  ------------gccacggcagagtaggagcg
B D                   Panda  --------------------------------
B D                     Dog  --------------------------------
B D                 Ferret   --------------------------------
B D                     Cat  --------------------------------
            Pacific walrus  --------------------------------
       Princess of Burundi  ================================
B D            Nile tilapia  ================================
B D               Tetraodon  ================================
               Zebra mbuna  ================================
B D               Zebrafish  ================================
B D              Coelacanth  ================================
               Spotted gar  ================================
       Pundamilia nyererei  ================================
     Burton's mouthbreeder  ================================
  D         Green seaturtle  ================================
  D     Collared flycatcher  ================================
B D           X. tropicalis  ================================
B D              Budgerigar  ================================
  D           Scarlet macaw  ================================
B D     Medium ground finch  ================================
  D  White-throated sparrow  ================================
  D        Peregrine falcon  ================================
  D            Saker falcon  ================================
B D                  Turkey  ================================
B D                 Chicken  ================================
B D                  Lizard  ================================
B D             Zebra finch  ================================
  D          Painted turtle  ================================
        Tibetan ground jay  ================================
  D                  Parrot  ================================
B D         Tasmanian devil  ================================
B D                 Opossum  ================================
  D             Rock pigeon  ================================
  D            Mallard duck  ================================
              Weddell seal  --------------------------------
B D      American alligator  ================================

Inserts between block 5 and 6 in window
B D                Dolphin 146bp
              Killer whale 1bp

Alignment block 6 of 1514 in window, 98247835 - 98247877, 43 bps 
B D                   Human  aatcagagccccatcaagc--------aggaatg----gtggcctttcccaggtt
B D                   Chimp  aatcagagccccatcaagc--------aggaatg----gtggcctttcccaggtt
B D                 Gorilla  aatcagagccccatcaagc--------aggaatg----gtggcctttcccaggtt
B D               Orangutan  aatcacagccccatcaagc--------aggaatg----gtggcctttcccaggtt
B D                  Gibbon  aatcacagccccattaagc--------aggaatg----gtagcctttcccaggtt
B D                  Rhesus  aatcacagccccatcaagc--------aggaatg----gtggcctttcccaggtt
B D     Crab-eating macaque  aatcacagccccatcaagc--------aggaatg----gtggcctttcccaggtt
B D                  Baboon  aatcacagccccatcaagc--------aggaatg----gtggcctttcccaggtt
B D            Green monkey  aatcacagccccatcaagc--------aggaatg----gtggcctttcccaggtt
B D                Marmoset  agtcgcagccccatcagac--------aggaatg----gtggcctttcccaggtt
B D         Squirrel monkey  agtcacagccccatcagac--------aggcatg----gtggcctttcccaggtt
B D                Bushbaby  tatcacaaccacatcaagc--------agagatg----gtgttctttcacgggtt
         Chinese tree shrew  tactgcagccctgccaggc--------ggggacg----gcactctttcgcaaggt
B D                Squirrel  tactggagccacatcaagc--------agggatg----gtggcctttcccaggtt
     Lesser Egyptian jerboa  cagtgtagccacatcacac--------aagaa-g----gggacctttccc-----
               Prairie vole  gagcacagccacctcacat--------gtggtcg----gtggcctttcccaggct
B D         Chinese hamster  gagc----acacctcacac--------gtgggca----gcggcctttcccaggct
             Golden hamster  cagcgcagacacctcacat--------gtgcacg----gtggcctttcccaggct
B D                   Mouse  gagcacagccgcctcac-----------tggatg----gtggcctctcccaggtt
B D                     Rat  gagcacagccacctctc-t--------gtggatg----gtggcttttcccaggtt
B D          Naked mole-rat  tagttcagccacatcaggt--------agggatg----gtggccttttccgggtt
B D              Guinea pig  tagttctgccacatcaagt--------agggatg----gtggccttttccagatt
                 Chinchilla  tagttcagccacatccagt--------agggatg----gtggccttttccagatt
           Brush-tailed rat  tagttcagccacgtcaagt---------ggggtg----gttgctctctccagacg
B D                  Rabbit  tggtgcagtcaagccaagc---------agggtg----atggcttttcctaagtt
B D                    Pika  tagtgcagtcatgccaagc---------agggtg----atggcttttcctaggtt
B D                     Pig  tatcacagccacctcaagc--------aggaatg----gtggcctttcctagctt
B D                  Alpaca  tttcacagccacatcaagc--------aggggtg----gtggcctttccta-gtt
             Bactrian camel  tttcacagccacatcaagc--------aggggtg----gtggcctttcctaggtt
B D                 Dolphin  gccaacagccaggtcaagc--------agggatg----gtggcctttcctaggtt
               Killer whale  gccaacagccaggtcaagc--------agggatg----gtggcctttcctaggtt
           Tibetan antelope  tatcacagccacttcgagc--------agagatg----gtggcctttcctaggtt
B D                     Cow  tatcacagccacatcgagc--------agagatg----gtggccttccctaggtt
B D                   Sheep  tatcacagccacatcgagc--------agagatg----gtggcctttcctaggtt
              Domestic goat  tatcacagccacattgagc--------agagatg----gtggcctttccaaggtt
B D                   Horse  tatcacagccacatcaagc--------aggga-g----ggggcctttcctaggtt
B D        White rhinoceros  tatcacagccacatcaagc--------aggga-g----gcggcctttcctaggtt
           Black flying-fox  tatcacagccacgtcaagt--------agggatg----gtgacttttcctaggtt
B D                 Megabat  tatcacagccacgtcaagt--------agggatg----gtgacttttcctaggtt
              Big brown bat  tattatagctacaccaaga--------agggatg----gtggcctttcctagatt
       David's myotis (bat)  tattgtagctacatcaaga--------agggatg----gtggcctttcctagatt
B D                Microbat  tattgtagctacatcaaga--------agggatg----gtggcctttcctagatt
B D                Hedgehog  aatcacagccatgccaagc--------agggatg----gttgcctt---caagct
B D                   Shrew  tatcagtgccacatc-----------------------tccactcttgctgggtg
            Star-nosed mole  aatcacagccacatcaagc--------aggagtagtcggtcgccttttcccaatt
B D                Elephant  tatcacagccacatcaagc--------aaggata----gtggccttttctacgtt
        Cape elephant shrew  cctcgggaccacctcaaac--------aagaatg----atgccctttcctaggtt
B D                 Manatee  tatcacgcccacatcaagc--------aaggata----gtggcctttcttaggtt
           Cape golden mole  tatcccggccacatcaagc--------agggata----gtggcctttcctaggtt
B D                  Tenrec  tatcttggccacatcaagc--------agggttg----gtggcctttcctaggtt
                   Aardvark  catcacagccacatcaagc--------aggcatg----gtggcctttcctgggtt
B D               Armadillo  tatcacaggcatatcaagc--------agagatg----gtggcctttcctaggtt
B D                 Wallaby  ----------------------------gggagg----gggcgctttttgatagt
B D                Platypus  ------ggactctccaagtccctgaggagggcac----gcggcctctcccgggtc
B D                   Panda  -------------------------------------------------------
B D                     Dog  -------------------------------------------------------
B D                 Ferret   -------------------------------------------------------
B D                     Cat  -------------------------------------------------------
            Pacific walrus  -------------------------------------------------------
       Princess of Burundi  =======================================================
B D            Nile tilapia  =======================================================
B D               Tetraodon  =======================================================
               Zebra mbuna  =======================================================
B D               Zebrafish  =======================================================
B D              Coelacanth  =======================================================
               Spotted gar  =======================================================
       Pundamilia nyererei  =======================================================
     Burton's mouthbreeder  =======================================================
  D         Green seaturtle  =======================================================
  D     Collared flycatcher  =======================================================
B D           X. tropicalis  =======================================================
B D              Budgerigar  =======================================================
  D           Scarlet macaw  =======================================================
B D     Medium ground finch  =======================================================
  D  White-throated sparrow  =======================================================
  D        Peregrine falcon  =======================================================
  D            Saker falcon  =======================================================
B D                  Turkey  =======================================================
B D                 Chicken  =======================================================
B D                  Lizard  =======================================================
B D             Zebra finch  =======================================================
  D          Painted turtle  =======================================================
        Tibetan ground jay  =======================================================
  D                  Parrot  =======================================================
B D         Tasmanian devil  =======================================================
B D                 Opossum  =======================================================
  D             Rock pigeon  =======================================================
  D            Mallard duck  =======================================================
              Weddell seal  -------------------------------------------------------
B D      American alligator  =======================================================

Inserts between block 6 and 7 in window
       Cape elephant shrew 1501bp

Alignment block 7 of 1514 in window, 98247878 - 98247900, 23 bps 
B D                   Human  ccatcc----------------ttaa---ct--------aaact-----------gactgt-
B D                   Chimp  ccatcc----------------ttaa---ct--------aaact-----------gactgt-
B D                 Gorilla  ccatcc----------------ttaa---ct--------aa---------------actgt-
B D               Orangutan  ccatcc----------------ttaa---ct--------aaact-----------gactgt-
B D                  Gibbon  ccatcc----------------ttaa---ct--------aaact-----------gactgt-
B D                  Rhesus  ccatcc----------------ttaa---ct--------acact-----------gactat-
B D     Crab-eating macaque  ccatcc----------------ttaa---ct--------acact-----------gactgt-
B D                  Baboon  ccatcc----------------ttaa---ct--------acact-----------gactgt-
B D            Green monkey  ccatcc----------------ttaa---ct--------acact-----------gactat-
B D                Marmoset  ccatcc----------------ttaa---ct--------aaatt-----------gactat-
B D         Squirrel monkey  ccgtcc----------------ttaa---ct--------aaatt-----------gactat-
B D                Bushbaby  ccatcc----------------ttaa---ca--------aaatt-----------ga-----
         Chinese tree shrew  cagtcc----------------ttaa---ct--------acatt-----------agacct-
B D                Squirrel  tggtcc----------------ttca---ct--------aaatt-----------aaatga-
     Lesser Egyptian jerboa  ----cc----------------ttac---ct--------aaatt-----------aaa--t-
               Prairie vole  cggccc----------------ttga---ct--------aaatt-----------aagagt-
B D         Chinese hamster  cagtcc----------------ttga---ct--------caatt-----------aagtgt-
             Golden hamster  t-gtcc----------------ttga------------------------------------
B D                   Mouse  t---------------------------------------------------------cct-
B D                     Rat  cagtcc----------------tgaa---ct--------aaatt-----------aagcgt-
B D          Naked mole-rat  cagtct------------------------------------tt-----------aaatgt-
B D              Guinea pig  gagtcc----------------tt----------------aatt-----------aaatg--
                 Chinchilla  cagtcc----------------tt----------------aatt-----------aagtgt-
           Brush-tailed rat  cagtcc----------------tt----------------aatt-----------aaagct-
B D                  Rabbit  cagtcc----------------ttaa---cg--------aaatt-----------aaatgt-
B D                    Pika  cagttc----------------ttga---ct--------aagtt-----------aaatgt-
B D                     Pig  tagtcc----------------ttaa---ct--------aaatt-----------aaatgc-
B D                  Alpaca  tagtcc----------------ttaa---cc--------aaatt-----------aaatgt-
             Bactrian camel  tagtcc----------------ttaa---cc--------aaatt-----------aaatgt-
B D                 Dolphin  tagtcc----------------ttaa---ct--------aaatt-----------aaatgt-
               Killer whale  tagtcc----------------ttaa---ct--------aaatt-----------aaatgt-
           Tibetan antelope  taatcc----------------ttaa---ct--------aaatt-----------aaatct-
B D                     Cow  taatcc----------------ttaa---ct--------caatt-----------aaatcc-
B D                   Sheep  taatcc----------------ttaa---ct--------aaatt-----------aaatct-
              Domestic goat  taatcc----------------ttaa---ct--------aaatt-----------aaatct-
B D                   Horse  tagtcc----------------ttaa---ct--------aaatg-----------aaatgt-
B D        White rhinoceros  tagtcc----------------ttaa---ct--------aaatt-----------aaatgt-
           Black flying-fox  ttgtcc----------------tt----------------aatt-----------aaatgt-
B D                 Megabat  ttgtcc----------------tt----------------aatt-----------aaatgt-
              Big brown bat  tattct----------------ttaa---ca--------aaatt-----------aaatgt-
       David's myotis (bat)  tagtcttaatctaggtttagggttaa---ct--------aaata-----------aaatgt-
B D                Microbat  tagtct----------------ttaa---ct--------aaatt-----------aaatgt-
B D                Hedgehog  tagtct----------------gtat---ct--------aaatt-----------aaatgt-
B D                   Shrew  tagtcc----------------tcgg---ct--------aaatt-----------taaatt-
            Star-nosed mole  tagtct----------------taac---ca--------aagta-----------aatact-
B D                Elephant  cagtcc----------------ttaa---tt--------aaatgc-----------------
B D                 Manatee  cagtcc----------------ttaa---tt--------aaatc------------------
           Cape golden mole  cagttc----------------ttaa---tt--------aactg------------------
B D                  Tenrec  cagtct----------------ttag---tt--------aaacg------------------
                   Aardvark  cagtcc----------------ttct---tt--------aaatg-atag-------------
B D               Armadillo  cagtcc----------------ttca---tt--------aattt-----aaatac-------
B D                 Wallaby  ----cc----------------ataacagcc--------acatt-----------g------
B D                Platypus  cagtcc----------------tgat---cttcggatggaaatc-----------gaggcgc
       Cape elephant shrew  ==============================================================
B D                   Panda  --------------------------------------------------------------
B D                     Dog  --------------------------------------------------------------
B D                 Ferret   --------------------------------------------------------------
B D                     Cat  --------------------------------------------------------------
            Pacific walrus  --------------------------------------------------------------
       Princess of Burundi  ==============================================================
B D            Nile tilapia  ==============================================================
B D               Tetraodon  ==============================================================
               Zebra mbuna  ==============================================================
B D               Zebrafish  ==============================================================
B D              Coelacanth  ==============================================================
               Spotted gar  ==============================================================
       Pundamilia nyererei  ==============================================================
     Burton's mouthbreeder  ==============================================================
  D         Green seaturtle  ==============================================================
  D     Collared flycatcher  ==============================================================
B D           X. tropicalis  ==============================================================
B D              Budgerigar  ==============================================================
  D           Scarlet macaw  ==============================================================
B D     Medium ground finch  ==============================================================
  D  White-throated sparrow  ==============================================================
  D        Peregrine falcon  ==============================================================
  D            Saker falcon  ==============================================================
B D                  Turkey  ==============================================================
B D                 Chicken  ==============================================================
B D                  Lizard  ==============================================================
B D             Zebra finch  ==============================================================
  D          Painted turtle  ==============================================================
        Tibetan ground jay  ==============================================================
  D                  Parrot  ==============================================================
B D         Tasmanian devil  ==============================================================
B D                 Opossum  ==============================================================
  D             Rock pigeon  ==============================================================
  D            Mallard duck  ==============================================================
              Weddell seal  --------------------------------------------------------------
B D      American alligator  ==============================================================

Alignment block 8 of 1514 in window, 98247901 - 98247950, 50 bps 
B D                   Human  tccccc---ttct--gatttct--cc---acggtcttct-----------gtc-t-c--ttgctc---tg
B D                   Chimp  tccccc---ttct--gatttct--cc---acggtcttct-----------gtc-t-c--ttgctc---tg
B D                 Gorilla  tccccc---ttct--gatttct--cc---acggtcttct-----------gtc-t-c--ttgctc---tg
B D               Orangutan  cccccc---ttct--gatttct--cc---acggtcttct-----------gtc-t-c--ttgctc---tg
B D                  Gibbon  tccccc---ttct--gatttct--cc---atggtcttct-----------gtc-t-c--ttgctc---tg
B D                  Rhesus  tccccc---ttct--gatttct--cc---atggtcttct-----------gtc-t-c--tcactc---tg
B D     Crab-eating macaque  tccccc---ttct--gatttct--cc---atggtcttct-----------gtc-t-c--tcactc---tg
B D                  Baboon  tccccc---ttct--gatttct--cc---atggtcttct-----------ctc-t-c--tcactc---tg
B D            Green monkey  tccccc---ttct--gatttct--cc---atggtcttct-----------gtc-t-c--tca--c---tg
B D                Marmoset  tccccc---ttct--gatttct--cc---atggtcttct-----------g---t-c--tcgctc---tg
B D         Squirrel monkey  tccccc---ttct--gatttct--cc---atggtcttct-----------ggctc-c--tcgctc---tg
B D                Bushbaby  ------------------gtct--tt---gtggttttct-----------gtc-c-c--tcattc---ta
         Chinese tree shrew  tgcccc---tcct--gaactct--cc---ctag--ctct-----------gtc-a-c-----ctc---tg
B D                Squirrel  ttccct---ttct--gatttct--cc---a--ttcttgt-----------gtc-c-c--ttaccc---ta
     Lesser Egyptian jerboa  tctcca---ttct--tctttcc--cccaaa--gtctttt-----------gtc-c-c--ttaccc---ta
               Prairie vole  tcttgc---ctct--ggtttcc--cc---a--gtcttct-----------ttt-c-c--taactc---ta
B D         Chinese hamster  tctcac---ttct--ggtttcc--cc---a--gtcttct-----------ttt-c-c--taacgc---ta
             Golden hamster  -ctcac---ttcc--ggtttcc--cc---a--gtcttc------------ttt-c-c--taactc---ta
B D                   Mouse  tctcac---ttct--tgttaac--tc---c--gtcttct-----------gtt-c-c--taactc---ta
B D                     Rat  tcttgc---ttct--tgttgac--tc---a--gtcttgt-----------gtt-c-c--taactc---ta
B D          Naked mole-rat  tccccc---atct--gatttctctat---a--atccttt-----------gtc-t-c--tcactt---tg
B D              Guinea pig  tccccc---ttct--gatttctccgt---a--atctttt-----------g--------tctctc---tg
                 Chinchilla  tccccc---ttct--aatttct--gc---a--gtttttt-----------gtc-t-c--tcactc---tg
           Brush-tailed rat  tcccct---ttct--ggtgttt--gc---a--gtctctt-----------g--------ccactc---tg
B D                  Rabbit  tccccc---ttgt--gatttct--cctg-a--gtctttt-----------gtc-c-c--tcactc---ta
B D                    Pika  tccccc---ttct--gatttct--cc---a--gtctttc-----------atc-c-c--tcactctatta
B D                     Pig  t-cccc---ctct--gacttct--tc---gtagtctcct-----------gcc-c-c--cgactc---ta
B D                  Alpaca  tctccc---ttct--gacttct--cc---atagtctgct-----------ctc-c-c--tcaccc---ta
             Bactrian camel  tctccc---ttct--gacttct--cc---atggtctgct-----------ctc-c-c--tcaccc---ta
B D                 Dolphin  t-cccc---ttct--gacctct--cc---gtagtctcct-----------gtc-c-t--ccactc---ta
               Killer whale  t-cccc---ttct--gacctct--cc---gtagtctcct-----------gtc-c-t--ccactc---ta
           Tibetan antelope  tccccc---ttct--gacttct--cc---atagt---ct-----------agc-c-t--tcactc---ta
B D                     Cow  tccccc---ttct--gacttct--cc---atagc---ct-----------agt-c-t--tcactc---ta
B D                   Sheep  tccccc---ttct--gacttct--cc---gtagt---ct-----------agc-c-t--tcactc---ta
              Domestic goat  tccccc---ttct--gacttct--cc---gtagt---ct-----------agc-c-t--tcactc---ta
B D                   Horse  --cccc---ctct--gacttat--cc---ctagtctcct-----------gtc-c-t--ccactc---ta
B D        White rhinoceros  tccccc---ttct--gacttat--tc---ctagtctcct-----------atc-c-t--ccactc---ta
           Black flying-fox  --tccc------------------ct---atagtcgcct-----------ggc-cac--ccagtc---ta
B D                 Megabat  --tccc------------------ct---atagtcgcct-----------ggc-cgc--ccagtc---ta
              Big brown bat  --tccc------------------tc---atagtctcct-----------ctc-c-c--ccactc---ta
       David's myotis (bat)  --tccc------------------tc---atagtctcct-----------ctc-c-c--ccactc---ta
B D                Microbat  --tccc------------------tc---atagtctcct-----------ctc-c-c--ccactc---ta
B D                Hedgehog  tccccc---ttcagagatttct--cc---agaatctcctgcccctctgaaccc-c-c--ttaccc---ca
B D                   Shrew  tcccct---c-----aacttcc--cc---agtctcccg------------ccc-g-c--ccccac---c-
            Star-nosed mole  tccttc---t-----gacgtcg--cc---acagtcccc------------gcc-c-c--ccacac---ca
B D                Elephant  -tcccc---ctct--ggcttct--cc---acagtctctt-----------gtt-t-c--cccttt---aa
        Cape elephant shrew  tttccc---ctct--ggcttct--cc---atagtcttct-----------gtt-c-c--tcattc---aa
B D                 Manatee  ttcccc---ctct--ggcttct--tc---atagtgtcct-----------gtt-c-c--acattt---ga
           Cape golden mole  tttccc---ctct--aacttct--cc---a--------------------------------ttc---aa
B D                  Tenrec  ttccct---gtct--gacttct--cc---a--------------------------------ttc---ga
                   Aardvark  ----cc---ctct--gacttct--cc---atagtctcct-----------gtt-a-c--ca-ttt---ga
B D               Armadillo  ctccccacacacc--gatgttt--ct---atagtctcca-----------gtt-c-c--ccattc---tc
B D                 Wallaby  -cccag---ttca--gatttcc--at---ctagcacttt-----------gtc-t-ctttccctc---aa
B D                Platypus  tcgccc---tccc--tctttcc--cc---g----ctcct-----------gcc-g-t--gcctcc---c-
B D                   Panda  ----------------------------------------------------------------------
B D                     Dog  ----------------------------------------------------------------------
B D                 Ferret   ----------------------------------------------------------------------
B D                     Cat  ----------------------------------------------------------------------
            Pacific walrus  ----------------------------------------------------------------------
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================
B D               Zebrafish  ======================================================================
B D              Coelacanth  ======================================================================
               Spotted gar  ======================================================================
       Pundamilia nyererei  ======================================================================
     Burton's mouthbreeder  ======================================================================
  D         Green seaturtle  ======================================================================
  D     Collared flycatcher  ======================================================================
B D           X. tropicalis  ======================================================================
B D              Budgerigar  ======================================================================
  D           Scarlet macaw  ======================================================================
B D     Medium ground finch  ======================================================================
  D  White-throated sparrow  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
B D                  Turkey  ======================================================================
B D                 Chicken  ======================================================================
B D                  Lizard  ======================================================================
B D             Zebra finch  ======================================================================
  D          Painted turtle  ======================================================================
        Tibetan ground jay  ======================================================================
  D                  Parrot  ======================================================================
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
  D             Rock pigeon  ======================================================================
  D            Mallard duck  ======================================================================
              Weddell seal  ----------------------------------------------------------------------
B D      American alligator  ======================================================================

                      Human  ccaaactt
                      Chimp  ccaaactt
                    Gorilla  ccaaactt
                  Orangutan  tcaaactt
                     Gibbon  ccagactt
                     Rhesus  ccagactt
        Crab-eating macaque  ccagactt
                     Baboon  ccagactt
               Green monkey  ccagactt
                   Marmoset  ccaaattt
            Squirrel monkey  ccaaattt
                   Bushbaby  ccagacct
         Chinese tree shrew  ccaggcct
                   Squirrel  ccagacct
     Lesser Egyptian jerboa  tcagacaa
               Prairie vole  ccaggcct
            Chinese hamster  ccagacct
             Golden hamster  ccagacct
                      Mouse  ctagacct
                        Rat  ccagacct
             Naked mole-rat  ccacacct
                 Guinea pig  acag-ccc
                 Chinchilla  ccagacct
           Brush-tailed rat  gagaacct
                     Rabbit  tcacatct
                       Pika  tcagacct
                        Pig  ccagacct
                     Alpaca  ccagacct
             Bactrian camel  ccagacct
                    Dolphin  ccagacct
               Killer whale  ccagacct
           Tibetan antelope  ctagacct
                        Cow  ctagacct
                      Sheep  ctagacct
              Domestic goat  ctagacct
                      Horse  ccagacct
           White rhinoceros  ccagacct
           Black flying-fox  ccagacct
                    Megabat  ccagacct
              Big brown bat  ccagacct
       David's myotis (bat)  ccagacct
                   Microbat  caagacct
                   Hedgehog  ctctacct
                      Shrew  ccat---t
            Star-nosed mole  ccatacct
                   Elephant  caggac--
        Cape elephant shrew  caggg---
                    Manatee  caggacct
           Cape golden mole  caggagct
                     Tenrec  caggacct
                   Aardvark  caggacca
                  Armadillo  ctgg-cct
                    Wallaby  ccaccact
                   Platypus  --------
                      Panda  --------
                        Dog  --------
                    Ferret   --------
                        Cat  --------
             Pacific walrus  --------
        Princess of Burundi  ========
               Nile tilapia  ========
                  Tetraodon  ========
                Zebra mbuna  ========
                  Zebrafish  ========
                 Coelacanth  ========
                Spotted gar  ========
        Pundamilia nyererei  ========
      Burton's mouthbreeder  ========
            Green seaturtle  ========
        Collared flycatcher  ========
              X. tropicalis  ========
                 Budgerigar  ========
              Scarlet macaw  ========
        Medium ground finch  ========
     White-throated sparrow  ========
           Peregrine falcon  ========
               Saker falcon  ========
                     Turkey  ========
                    Chicken  ========
                     Lizard  ========
                Zebra finch  ========
             Painted turtle  ========
         Tibetan ground jay  ========
                     Parrot  ========
            Tasmanian devil  ========
                    Opossum  ========
                Rock pigeon  ========
               Mallard duck  ========
               Weddell seal  --------
         American alligator  ========

Alignment block 9 of 1514 in window, 98247951 - 98247985, 35 bps 
B D                   Human  gtttt-cttatctctgt--agagatgagtggc----ttgttt
B D                   Chimp  gtttt-cttatctctgt--agagatgagtggc----ttgttt
B D                 Gorilla  gtttt-cttatctctgt--agagatgagtggc----ttgttt
B D               Orangutan  gtttt-catatctctat--agagatgagtggc----ttgttt
B D                  Gibbon  gtttt-catatctctgt--agagatgagtggc----ttgttt
B D                  Rhesus  gtttt-catatctccat--agagatgagtagc----ttgttt
B D     Crab-eating macaque  gtttt-catatctccat--agagatgagtagc----ttgttt
B D                  Baboon  gtttt-catatctccat--agagatgagtagc----ttgttt
B D            Green monkey  gtttt-catatctccat--agagatgagtagc----ttgttt
B D                Marmoset  gtctt-catacctctat--agggatgagtggc----ttgact
B D         Squirrel monkey  gtctt-catacctctat--agggacgagtggcttgtttgact
B D                Bushbaby  gtcta-tgtatttctgt--agagatgagtggc----ttgttt
         Chinese tree shrew  gactt---tattcccgt--gcagacgagtggc----ttgtgt
B D                Squirrel  atctt-catgtttctatagaga-----gtggc----ttgact
     Lesser Egyptian jerboa  gtctt-gttattcctatagaga-----gtggc----ttgttt
               Prairie vole  gtcttttgtattcctgc--aga-----gtgac----ttgatt
B D         Chinese hamster  gtctt--gtgttcctgc--aga-----gtggc----ttgatt
             Golden hamster  atctt-ggtgttcctgc--aga-----gtggc----ttgatt
B D                   Mouse  gtctt-ggtgttcctgc--aga-----ggagc----ttggct
B D                     Rat  gtttt-ggcgttcctgc--aga-----ggggc----tgtact
B D          Naked mole-rat  gtctc-cttgttcctgt--aga-----gtggc----ttcttt
B D              Guinea pig  atctt-aatgttcctat--aga--------gc----ttgctt
                 Chinchilla  gtctt-tatgttcctat--aga-----gtggc----ttgttt
           Brush-tailed rat  gtctt-catgttcccat--aga-----gtggc----ttcttt
B D                  Rabbit  gtctt-catgttcctat--agagatgagtggc----ttgttt
B D                    Pika  gtatt-catgttcccat--agagatgagtggc----ttgttg
B D                     Pig  gtcct-ctttttcctgc--aaagatgagtggc----ctattt
B D                  Alpaca  gtctt-ctttttcctgc--agagatgagtggc----ttgttt
             Bactrian camel  gtctt-ctttttcctgc--agagatgagtggc----ttgttt
B D                 Dolphin  gtctt-ctttttcctgc--agagatgagcggc----ctgttt
               Killer whale  gtctt-ctttttcctgc--agagatgagcggc----ctgttt
           Tibetan antelope  gtctt-ctttttcctgc--agagatgagtggc----ctgttt
B D                     Cow  gtctt-ctttttcctgc--agagatgagtggc----ctgttg
B D                   Sheep  gtctt-cttcttcctgc--agaga-------------tgttt
              Domestic goat  g---t-cttcttcctgc--agagatgagtggc----ctgttt
B D                   Horse  g---t-cttattcctac--agacatgagtggc----ttgttt
B D        White rhinoceros  g---t-ctttttcctac--agaggtgagtggc----ttgttt
           Black flying-fox  g------ttcttcctac--agagatgagtggc----ttattt
B D                 Megabat  g------ttcttcctac--agagatgagtggc----ttattt
              Big brown bat  gtctt-cttattcctac--agagatgagtggc----ttattt
       David's myotis (bat)  gtctt-cttattcctac--agagatgagtggc----ttattt
B D                Microbat  gtctt-cttattcctac--agagatgagtggc----ttattt
B D                Hedgehog  g---t-cttcctc-tac--agagaagagtggc----ttgttt
B D                   Shrew  t---t-ctgattc-tac--aagcatgacaggc----gt-gtt
            Star-nosed mole  g---t-cttactcatac--agagatgagtggc----ttcttt
B D                Elephant  --ctc-tctattccgac--agagatgaag-gc----ttgttt
        Cape elephant shrew  -------ctgttcgcac--agagattcagagc----ttattt
B D                 Manatee  gtctt-tctgttcctac--agagatgagg-gc----ttgttt
           Cape golden mole  gtctt-tctattcctat--ggatattaggggt----tggtat
B D                  Tenrec  gtgtt-tcttttcctac--agagattaggggt----ttgttc
                   Aardvark  gtct------ttcctac--agagattaggggc----ttgtct
B D               Armadillo  gtcct-tctgttcctac--agagatgagtggc----t-----
B D                 Opossum  gtttc-catctctcccc--aag--------ac----ttgctt
B D                 Wallaby  ---------ctttcccc--aag--------at----ttg-tt
B D                Platypus  acttc-cccgtgctcct--ggacgggaggggc----tcagcc
B D                   Panda  ------------------------------------------
B D                     Dog  ------------------------------------------
B D                 Ferret   ------------------------------------------
B D                     Cat  ------------------------------------------
            Pacific walrus  ------------------------------------------
       Princess of Burundi  ==========================================
B D            Nile tilapia  ==========================================
B D               Tetraodon  ==========================================
               Zebra mbuna  ==========================================
B D               Zebrafish  ==========================================
B D              Coelacanth  ==========================================
               Spotted gar  ==========================================
       Pundamilia nyererei  ==========================================
     Burton's mouthbreeder  ==========================================
  D         Green seaturtle  ==========================================
  D     Collared flycatcher  ==========================================
B D           X. tropicalis  ==========================================
B D              Budgerigar  ==========================================
  D           Scarlet macaw  ==========================================
B D     Medium ground finch  ==========================================
  D  White-throated sparrow  ==========================================
  D        Peregrine falcon  ==========================================
  D            Saker falcon  ==========================================
B D                  Turkey  ==========================================
B D                 Chicken  ==========================================
B D                  Lizard  ==========================================
B D             Zebra finch  ==========================================
  D          Painted turtle  ==========================================
        Tibetan ground jay  ==========================================
  D                  Parrot  ==========================================
B D         Tasmanian devil  ==========================================
  D             Rock pigeon  ==========================================
  D            Mallard duck  ==========================================
              Weddell seal  ------------------------------------------
B D      American alligator  ==========================================

Inserts between block 9 and 10 in window
B D                Opossum 4bp
B D                Wallaby 8bp

Alignment block 10 of 1514 in window, 98247986 - 98248005, 20 bps 
B D                   Human  ga---------------t-----gttcttt-ccatggcaa-------a---
B D                   Chimp  ga---------------t-----gttcttt-ccatggcaa-------a---
B D                 Gorilla  ga---------------t-----gttcttt-ccatggcaa-------a---
B D               Orangutan  ga---------------t-----gttcttt-ccatggcaa-------a---
B D                  Gibbon  ga---------------t-----gttcttt-ccatggcaa-------a---
B D                  Rhesus  ga---------------t-----gttcttt-ccatggcaa-------a---
B D     Crab-eating macaque  ga---------------t-----gttcttt-ccatggcaa-------a---
B D                  Baboon  ga---------------t-----gttcttt-ccatggcaa-------a---
B D            Green monkey  ga---------------t-----gttcttt-ccatggcaa-------a---
B D                Marmoset  ga---------------t-----gttcttt-ccatggcaa-------a---
B D         Squirrel monkey  ga---------------t-----gttcttt-ccatggcaa-------a---
B D                Bushbaby  ga---------------ccgatgttttttt-ccattgcaa-------a---
         Chinese tree shrew  ga-cccc----------t-----gttctttcccactgtga-------a---
B D                Squirrel  -----------------t-----ttctttt-c-attacaa-------a---
     Lesser Egyptian jerboa  ga-ccta----------t-----gttcttt-cctttacaa-------a---
               Prairie vole  ga--cac----------t-----ttcttcc-caattgc-a-------a---
B D         Chinese hamster  gg-ccag----------t-----ttcttgc-c--ttggtt-------c---
             Golden hamster  gg-ccag----------t-----ttcttgc-caattgcaa-------a---
B D                   Mouse  ga-ccaa----------t-----ttcttct-caattgcaa-------a---
B D                     Rat  ga-ccaa------------------cttct-ctatcgcagttcttctc---
B D          Naked mole-rat  ga-ccta----------t-----gttcctt-ccattgcaa-------a---
B D              Guinea pig  ga-ccaa----------g-----gttcttt-ccattgcag-------a---
                 Chinchilla  ga-ccag----------t-----gttcctt-ccattgcaa-------a---
           Brush-tailed rat  ga---------------t-----gctcgtt-ccattacaa-------a---
B D                  Rabbit  ga-ctga----------t-----gttcttt-ccattacaa-------a---
B D                    Pika  ga-ccga----------t-----gttctct-ctgttacaa-------a---
B D                     Pig  ga-ccca----------t-----gttcttt-ctgctgcaa-------a---
B D                  Alpaca  ga-ccca----------t-----gttcttt-ccgttgcaa-------a---
             Bactrian camel  ga-ccca----------t-----gttcttt-ccattgcaa-------a---
B D                 Dolphin  ga-ccca----------t-----gttcttt-ccactgcaa-------a---
               Killer whale  ga-ccca----------t-----gttcttt-ccactgcaa-------a---
           Tibetan antelope  ga-ctga----------t-----gttcttt-ccacttcaa-------a---
B D                     Cow  ga-ctga----------t-----gctcttt-ccacttcaa-------a---
B D                   Sheep  ga-caga----------t-----gttcttt-ccacttcaa-------a---
              Domestic goat  ga-caga----------t-----gttcttt-ccacttcaa-------a---
B D                   Horse  ca-ccga----------t-----gttcttt-ccattgcaa-------a---
B D        White rhinoceros  ga-ccaa----------t-----gttcttt-ccattgcaa-------a---
           Black flying-fox  gacccaa----------t-----tttcttt-ccattgcaa-------a---
B D                 Megabat  gacccaa----------t-----gttcttt-ccattgcaa-------a---
              Big brown bat  ga-ctaa----------t-----gctcttt-ccattgcaa-------a---
       David's myotis (bat)  ga-ctga----------t-----gctcttt-ccattgcaa-------a---
B D                Microbat  ga-ctga----------t-----gctcttt-ccattgcaa-------a---
B D                Hedgehog  ga-tcag----------------tgttctt-ccactgcaa-------a---
B D                   Shrew  ga-actgcacaaattgat-----gttcttt-ccactgcac-------a---
            Star-nosed mole  ga-ccta----------------gttcttt-ccattgcaa-------a---
B D                Elephant  ga-ctga----------t-----g-ttctt-ccattgcaa-------a---
        Cape elephant shrew  ga-----------------------tcttt-ccattttga-------a---
B D                 Manatee  ga-ctga----------t-----gttcttt-ccattgcaa-------a---
           Cape golden mole  ga--tga------------------cct-----attgcaa-------a---
B D                  Tenrec  ga-ctga------------------ccttg-tcattacca-------a---
                   Aardvark  ga-ctga----------t-----attctta-ccattgcaa-------a---
B D               Armadillo  ----tga----------t-----gttcttt-ccattgcaa-------a---
B D                 Opossum  -----ca----------c-----acgcgat-acactgcaa-------a---
B D         Tasmanian devil  -----gc----------t-----actcgtt-acattgcaa-------a---
B D                 Wallaby  -----ga----------t-----actcatt-acattgcaa-------a---
B D                Platypus  ---------------gct-----gtcctct-cacttgcgt-------aaaa
B D                   Panda  ---------------------------------------------------
B D                     Dog  ---------------------------------------------------
B D                 Ferret   ---------------------------------------------------
B D                     Cat  ---------------------------------------------------
            Pacific walrus  ---------------------------------------------------
       Princess of Burundi  ===================================================
B D            Nile tilapia  ===================================================
B D               Tetraodon  ===================================================
               Zebra mbuna  ===================================================
B D               Zebrafish  ===================================================
B D              Coelacanth  ===================================================
               Spotted gar  ===================================================
       Pundamilia nyererei  ===================================================
     Burton's mouthbreeder  ===================================================
  D         Green seaturtle  ===================================================
  D     Collared flycatcher  ===================================================
B D           X. tropicalis  ===================================================
B D              Budgerigar  ===================================================
  D           Scarlet macaw  ===================================================
B D     Medium ground finch  ===================================================
  D  White-throated sparrow  ===================================================
  D        Peregrine falcon  ===================================================
  D            Saker falcon  ===================================================
B D                  Turkey  ===================================================
B D                 Chicken  ===================================================
B D                  Lizard  ===================================================
B D             Zebra finch  ===================================================
  D          Painted turtle  ===================================================
        Tibetan ground jay  ===================================================
  D                  Parrot  ===================================================
  D             Rock pigeon  ===================================================
  D            Mallard duck  ===================================================
              Weddell seal  ---------------------------------------------------
B D      American alligator  ===================================================

Inserts between block 10 and 11 in window
B D                Opossum 3bp
B D        Tasmanian devil 3bp
B D                Wallaby 3bp

Alignment block 11 of 1514 in window, 98248006 - 98248141, 136 bps 
B D                   Human  aattta--ttcaatgcaaagttcactt-cagacactt-ggttgagac-ttga---------------ag-
B D                   Chimp  aattta--ttcaatgcaaagttcactt-cagacactt-ggttgagactttga---------------ag-
B D                 Gorilla  aattta--ttcaatgcaaagttcactt-cagacactt-ggttgagac-ttga---------------ag-
B D               Orangutan  aattta--ttcaatgcaaagttcactt-cagacactt-ggttgagac-ttga---------------ag-
B D                  Gibbon  aattta--ttcaatgcaaagttcactt-cagacactt-ggttgagac-ttga---------------ag-
B D                  Rhesus  aattta--ttcaatgcaaagttcactt-cagacactt-ggttgggac-ttga---------------ag-
B D     Crab-eating macaque  aattta--ttcaatgcaaagttcactt-cagacactt-ggttgggac-ttga---------------ag-
B D                  Baboon  aattta--ttcaatgcaaagttcactt-cagacactt-ggttgggac-ttga---------------ag-
B D            Green monkey  aattta--ttcaatgcaaagttcactt-cagacactt-ggttgggac-ttga---------------ag-
B D                Marmoset  aagtta--ttgaatgcaaagttcactt-tagacactt-ggttgagac-tgga---------------ag-
B D         Squirrel monkey  aattta--ttggatgcaaagttcactt-tagacactt-ggttgagac-tgga---------------ag-
B D                Bushbaby  atttaa--ttcaatgcaaaattccttc-cagacactt--gttgagac-ttgg---------------aa-
         Chinese tree shrew  acgtgt--ttggttgcagagctcactc-cagacactg-gtttggggc-ctga---------------aa-
B D                Squirrel  aatgta--tttgatgcaaagttg----------actt-ggttgagac-ctta---------------aa-
     Lesser Egyptian jerboa  cat-----tttaaggtaaagttg----------gctt-agttaagac-ttga---------------aa-
               Prairie vole  agtttg--tttaaggtgaagtgg----------cctt-ggttaa-at-ctga---------------aa-
B D         Chinese hamster  agtctgaaacttaggctaac--------------------------c-ctgacatgggggtgctcctaa-
             Golden hamster  ggtttg--tttaaggtgaag--------------------------t-ctga---------------aa-
B D                   Mouse  agt------ttaaggtgaagtgg----------cttt-ggttaa-at-ctga---------------aa-
B D                     Rat  agtttg---ttaaggtgaagtgg----------cctt-ggttaa-at-ctga---------------aa-
B D          Naked mole-rat  aattta--ttcaacgtaaagctg----------attt-ggttgagat-ctga---------------aa-
B D              Guinea pig  aattca--ttcaacatgaagctg----------attt-gattgtgat-ctga---------------ag-
                 Chinchilla  aattta--ttcaacacaaagctg----------attt-gattgagat-ctga---------------aa-
           Brush-tailed rat  gatgta--ttcagtacaaagctg----------attt-gattgagag-ttga---------------aa-
B D                  Rabbit  aattca--ttcaatgcaaagttc----------attt-ggttgagac-ctga---------------ag-
B D                    Pika  aactca--ttcaatgcaaagttc-----------ttt-ggttgagat-ctga---------------ag-
B D                     Pig  aattta--ttcaatataaaatacacgc-tataaactt-gg--gggac-ctga---------------ca-
B D                  Alpaca  atttta--ttcaatgcaacattcactc-cagaaactt-gg--gagac-ctga---------------ca-
             Bactrian camel  atttta--ttcaatgcaacattcactc-cagaaactt-gg--gagac-ctga---------------ca-
B D                 Dolphin  acttta--ttcaatgcaaaattcactc-cagaagcct-gg--gggac-ccga---------------cc-
               Killer whale  acttta--ttcaatgcaaaattcactc-cagaagcct-gg--gggac-ccga---------------cc-
           Tibetan antelope  aattta--ttcaatggaaagttcactc-cagaaacct-gg--gggac-ttga---------------ca-
B D                     Cow  aattta--ttcaatggaaagttcagtc-cagaaacct-gg--gggac-tcga---------------ca-
B D                   Sheep  aattta--ttcaatggaaagttcactc-cagaaacct-gg--gggac-ttga---------------ca-
              Domestic goat  aattta--ttcaatggaaagttcactc-cagaaacct-gg--gggac-ttga---------------ca-
B D                   Horse  aactta--tttactgcaaagttcactc-cagaaactt-ggttgagac-ctga---------------aa-
B D        White rhinoceros  aattta--ttcagtgtaaagttcactc-cagaaactt-ggttgagac-ctga---------------aa-
B D                     Cat  aactta--ttccatgcaaagttcactc-cagaaactt-ggttgagac-ctga---------------aa-
B D                     Dog  aattta--gtccatgcaaagttcactc-cagaaactt-ggttgagtc-ttga---------------aa-
B D                 Ferret   aattta--ttccatgcgaagttcactc-cagaagctt-ggttgagac-ctga---------------aa-
B D                   Panda  aattta--ttccatgcaaagttcactt-cagaaactt-ggttgagac-ctga---------------aa-
             Pacific walrus  aattta--taccatgcaaagttcacttccagaaactt-ggttgagac-ctga---------------aa-
               Weddell seal  aattta--ttccatgcaaagttcacttccagaaactt-agttgagac-ctga---------------aa-
           Black flying-fox  aattta--ttcaatgcaaagttcactt-cagaaactt-ggttgagat-ctga---------------aa-
B D                 Megabat  aattta--ttcaatgcaaagttcactt-cagaaactt-ggttgagat-ctga---------------aa-
              Big brown bat  aatgta--ttcaatgcaaagttcactt-cagaaactt-ggttgagac-ctga---------------aa-
       David's myotis (bat)  aatgta--ttcaatgcaaagttcactt-cagaaactt-ggttgagac-ctga---------------aa-
B D                Microbat  aacgta--ttcaatgcaaagttcactt-cagaaactt-ggttgagac-ctga---------------aa-
B D                Hedgehog  cattta--ttcaatgcaaagttcactt-gcaaaacttaggctgagat-ctga---------------aa-
B D                   Shrew  aattta--ttcagtgccaagttcactc-cagaaactt-ggttgagac-ccaa---------------aa-
            Star-nosed mole  cattta--ttcaatgcaaagttcactc-cacaagctt-ggttgagaa-ctaa---------------aa-
B D                Elephant  aattta--tttaatgcaaagttcactg-cagaaacct-ggttgagac-ctga---------------aa-
        Cape elephant shrew  aattta--tttaatgtaaagttcactc-cccaaacct-gatagagac-ctga---------------aat
B D                 Manatee  aagtta--tttaatgcaaa-ttcactc-cagaaacct-ggttgagac-ctga---------------aa-
           Cape golden mole  aatttg--tgaaatgcaaagttcagtc-tagaaacct-ggttgagac-ctga---------------ac-
B D                  Tenrec  aattga--attcttgcaaagtttgctc-cagaaacct-ggtcgagac-ctga---------------aa-
                   Aardvark  aattta--tttatagcaaagttcactc-cagaaacct-aattgagac-ctga---------------ag-
B D               Armadillo  aattta--ttcaatgcaaagttcactt-cagaaacct-ggttgata--ctga---------------aa-
B D                 Opossum  tattta--ttcgtagtaaaggtca--c-tggagacct-tgttcaga--ctgg---------------aa-
B D         Tasmanian devil  tattta--ttcattatgaagttcactc-tggaa---------------cggg---------------ag-
B D                 Wallaby  tattta--ttcattatgaagttcactc-tagagacct-tgttcagac-cagg---------------aa-
B D                Platypus  cgttta--tttgcgacagagttccctc-ccgagacct-ggtccgaat-ccga---------------ag-
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================
B D               Zebrafish  ======================================================================
B D              Coelacanth  ======================================================================
               Spotted gar  ======================================================================
       Pundamilia nyererei  ======================================================================
     Burton's mouthbreeder  ======================================================================
  D         Green seaturtle  ======================================================================
  D     Collared flycatcher  ======================================================================
B D           X. tropicalis  ======================================================================
B D              Budgerigar  ======================================================================
  D           Scarlet macaw  ======================================================================
B D     Medium ground finch  ======================================================================
  D  White-throated sparrow  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
B D                  Turkey  ======================================================================
B D                 Chicken  ======================================================================
B D                  Lizard  ======================================================================
B D             Zebra finch  ======================================================================
  D          Painted turtle  ======================================================================
        Tibetan ground jay  ======================================================================
  D                  Parrot  ======================================================================
  D             Rock pigeon  ======================================================================
  D            Mallard duck  ======================================================================
B D      American alligator  ======================================================================

                      Human  tt-----------ta--------gaccaatcctgagatgcg-t-ggtgatcctgagagag----a--gca
                      Chimp  tt-----------ta--------gaccaatcctgagatgcg-t-ggtgatcctgagagag----a--gca
                    Gorilla  tt-----------ta--------gaccaatcctgagatgcg-t-ggtgatcctgagagag----a--gca
                  Orangutan  tt-----------ta--------gaccaatcctgagatgca-t-ggtgatcctgagagag----a--tca
                     Gibbon  tt-----------ta--------gaccaatcctgagatgcg-t-ggtgatcctgagagag----a--tca
                     Rhesus  ct-----------ta--------gaccaatcctgagatgcg-t-ggtgatcct--gagag----a--tca
        Crab-eating macaque  ct-----------ta--------gaccaatcctgagatgcg-t-ggtgatcct--gagag----a--tca
                     Baboon  ct-----------ta--------gaccaatcctgagatgtg-t-ggtgatcct--gagag----a--tca
               Green monkey  ct-----------ta--------gaccaatcctgagatgcg-t-ggtgatcct--gagag----a--tca
                   Marmoset  ct-----------ta--------gaccaatcctgagataca-t--gtgatcctgagagag----a--tca
            Squirrel monkey  ct-----------ta--------gaccaatcctgagataca-t--gtgatcctgagagag----a--tca
                   Bushbaby  tt-----------ta--------ggccaatcctgtgat-ta-t-agtgatcctgagagag----a--ttg
         Chinese tree shrew  tg-----------ta--------ggccaatcctgagatgct-t-ggtgatcctgagag------------
                   Squirrel  tt-----------ta--------ggccaatcctgagatgca-t-ggtgatcctgagagaa----a--atg
     Lesser Egyptian jerboa  tt-----------ta--------agccaatcctgacatatg-t-gataatcttaac------------tg
               Prairie vole  tt-----------ta--------ggctaaccctgtgatgtg---agtgatcctaac--ag----a--cag
            Chinese hamster  ca-----------gagactggacggctaaccctgacatgag---ggtgctcctaacagag----a--ctg
             Golden hamster  ca---------------------ggctaaccctgacatgtg---ggtgctcataacagag----a--ctg
                      Mouse  tt-----------ta--------ggctaaccctacaatgtg---ggtgattctaag--ag----a--ctg
                        Rat  tt-----------ta--------ggctaaccttgcaatgta---ggtgattctaag--ag----a--ctg
             Naked mole-rat  tt-----------ta--------ggccaatcctgtgatgtg-t-ggtggtcct--gagag----a--ctg
                 Guinea pig  tt-----------ta--------ggccagtcctgagatgtg-t-ggtgatcctcagagag----a--ctg
                 Chinchilla  tt-----------ta--------ggccaatcctgagaagtg-t-ggtgatcctgagagag----a--ttg
           Brush-tailed rat  tt-----------ta--------ggtcaatcttgagatgtg-t-ggtgatcccaagagag----c--cta
                     Rabbit  cc-----------ta--------ggccaatcctgagatgca-t-ggtggtcctgagagag----a--ttg
                       Pika  tc-----------ta--------ggccaatcctgaaccgca-t-ggtggtcctgagaggg----a--cca
                        Pig  tt-----------ta--------gactagtcctgagatgca-c-agtgatcttg----------------
                     Alpaca  tt-----------ta--------ggccagtcctgagaagca-c-agagatcttg----------------
             Bactrian camel  tt-----------ta--------ggccagtcctgagaagca-c-agtgatcttg----------------
                    Dolphin  tt-----------ta--------ggccggtcctgaggcgca-c-agtgaccttg----------------
               Killer whale  tt-----------ta--------ggccggtcctgaggcgca-c-agtgaccttg----------------
           Tibetan antelope  tt-----------ta--------ggccagtcctgagatgca-c-agtgatctcg----------------
                        Cow  tt-----------ta--------ggccagtcctgagatgca-c-agtgatctcg----------------
                      Sheep  tt-----------ta--------ggccagtcctgagatgca-c-agtgatctcg----------------
              Domestic goat  tt-----------ta--------ggccagtcctgagatgca-c-agtgatcttg----------------
                      Horse  tt-----------ta--------ggccagtcctgagaagca-c-agtgatcttgagggag----a--ctg
           White rhinoceros  tt-----------ta--------ggccagtcctgagatgca-c-agtgatcttgagggag----a--ttg
                        Cat  tt-----------ga--------ggcaagtcctgagatgca-c-agtgatcttgagggag----a--ttg
                        Dog  tt-----------ta--------ggccagtcctgagatgca-c-agtaatcttgagggag----a--ctg
                    Ferret   tt-----------ta--------ggccagtcctgagacgta-c-agtgattttgagggag----a--ctg
                      Panda  tt-----------ta--------ggccagtcctgagatgca-c-agtgatcttgagggag----a--ctg
             Pacific walrus  tt-----------ta--------ggccagtcctgagatgca-c-agtgatcttgagggag----a--ccg
               Weddell seal  tt-----------ta--------ggccagtcctgagatgca-c-agtgatcttgagggag----a--ccg
           Black flying-fox  tt-----------ta--------agccagtcctgagataca-c-agtgatcttgagggag----a-----
                    Megabat  tt-----------ta--------agccagtcctgagataca-c-agtgatcttgagggag----a-----
              Big brown bat  tt-----------ta--------ggccagtcctgagatgca-c-agtgatcttgaggggg----acattt
       David's myotis (bat)  tt-----------ta--------ggccagccctgagatgca-c-agtgatcttgagggga----acattt
                   Microbat  tt-----------ta--------ggccagtcctgagatgca-c-agtgatcttgaggggg----acattt
                   Hedgehog  tt-----------ta--------ggctagtcctaagatgtt-------------aaggag----a--ctg
                      Shrew  cc-----------ga--------ggccagtcctgagatgcacg-ggtgatctggagggag----g--ttg
            Star-nosed mole  ct-----------ta--------gacccgtcctgagatgca----gtgatcttgaaggag----a--ttg
                   Elephant  tt-----------ta--------ggccaatcctgagatggg-t-ggtgatcctgagagag----a--ctg
        Cape elephant shrew  tt-----------ta--------ggccagtcctgagatgca-g-gccgatcctgagagag----a--gtg
                    Manatee  tt-----------ta--------ggccaatcctgagatgca-t-ggtgatcctgagagag----a--ctg
           Cape golden mole  tt-----------ga--------agttactcctgagatgca-c-gatggtcctgagagag----c--ctg
                     Tenrec  tg-----------ta--------ggccagtcctgagctgtg-t-gatgatcctgagaga--------ctg
                   Aardvark  tt-----------ta--------ggccaatcctgagatgcc-t-ggtgatcctgagagag----a--ctg
                  Armadillo  at-----------tt--------ggccaatcccgggatgca-t-ggtgatcctgagaaag----a--atg
                    Opossum  ttaaagtggagcgga--------ggccagtcctgaga--cc-g-cgtgaccctgaggcaggcaga--ttg
            Tasmanian devil  ttaaactggaccaga--------ggccagtcctgagg--ca-g-agtg-ccccgaggcaa-catg--tcg
                    Wallaby  ttaaactggaccgga--------ggccaatcctgaga--ca-g-aatgaccctgaggcaagcata--ttg
                   Platypus  ccggtcaggcccgga--------ggtgagtcctgagatgcg-gaaacgatcctgagacag----a--cag
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
        Medium ground finch  ======================================================================
     White-throated sparrow  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                     Parrot  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================
         American alligator  ======================================================================

                      Human  g---actgcctg-ccaggt-aaatggtccata-------------------------tt--------att
                      Chimp  g---actgcctg-ccaggt-aaatggtccata-------------------------tt--------att
                    Gorilla  g---actgcctg-ccaggt-aaatggtccata-------------------------tt--------att
                  Orangutan  g---actgcctg-ccaggt-aaatggtccata-------------------------tt--------att
                     Gibbon  g---actgcctg-ccaggt-aaatggtccata-------------------------tt--------att
                     Rhesus  g---actgcctg-ccaggt-aaatcgtccata-------------------------tt--------ttt
        Crab-eating macaque  g---actgcctg-ccaggt-aaatcgtccata-------------------------tt--------ttt
                     Baboon  g---actgcctg-ccaggt-aaatcgtccata-------------------------tt--------ttt
               Green monkey  g---actgcctg-ccaggt-aaatcgtccata-------------------------tt--------ttt
                   Marmoset  g---actgcctg-ccaggt-aaatgttgcata-------------------------tt--------ttt
            Squirrel monkey  g---actgcctg-ccaggt-aaatgttgcata--------------------------t--------ttt
                   Bushbaby  g---attgcttg-ccagat-aaatggcacaca-------------------------ct--------ttt
         Chinese tree shrew  g---attgcctg-ccaagt-acatgg--caca-------------------------gt--------ttt
                   Squirrel  g---attgtctg-ccaagt-gtaagacaca--------------------------ttc--------ctc
     Lesser Egyptian jerboa  g---attgctta-gcaggt-ataagacat---------------------------ttg--------ttt
               Prairie vole  g---actgcctg-ccagat-gtggaacatgct-----------------------gctg--------gct
            Chinese hamster  a---actgcctg-ctgaat-gtgggatgtact-----------------------gttg--------tct
             Golden hamster  g---cctgcctg-tcagat-gtggggtgtact-----------------------gttg--------tct
                      Mouse  g---cctgcctg-ccagat-atgg---------------------------------ca--------cct
                        Rat  g---actgcctg-ccagat-atgggct-tcct-----------------------gttg--------tct
             Naked mole-rat  g---attgtctg-tcaact-atatgacaca-t-----------------------attt--------ctt
                 Guinea pig  g---attgcc-------------cgacac--------------------------attt--------ctt
                 Chinchilla  g---attccctg-tcaggt-acatgacac--------------------------attt--------ctt
           Brush-tailed rat  g---actgcctg-tcaggt-gtctgacaca-t-----------------------attt--------ctg
                     Rabbit  g---attgtctg-ccagattatttgacacaca-----------------------gttt--------ttt
                       Pika  g---atcatctt-ccaggtcatacaagacttt-----------------------gttt--------tcc
                        Pig  --------cctg-ctgg-t-ttctggcacata-------------------------tc--------ttc
                     Alpaca  --------cctg-ccaggt-ttatggcaagtg-------------------------tt--------ttt
             Bactrian camel  --------cctg-ccaggt-ttatggcaagtg-------------------------tt--------ttt
                    Dolphin  --------cctg-ccgggg-tcaggacaagtg-------------------------tt--------ctt
               Killer whale  --------cctg-ccgggg-tcagggcaagtg-------------------------tt--------ctt
           Tibetan antelope  --------cctg-ctggat-ttatgacaagta-------------------------tt--------ttt
                        Cow  --------cctg-ctggat-ttatgacaagta-------------------------tt--------ttt
                      Sheep  --------cctg-ctggat-ttatgacaagta-------------------------tt--------ttt
              Domestic goat  --------cctg-ctggat-ttatgacaagta-------------------------tt--------ttt
                      Horse  g---attgcctg-ccaggt-acatggcatgta--------------------------t--------ttt
           White rhinoceros  g---attacctg-ccaggc-atatggcatgta--------------------------t--------ttt
                        Cat  g---attgcctg-ccaggt-gtatggcata---------------------------ct--------ttc
                        Dog  g---attgcctg-ccaggt-gaatggcatata----------------------tattt--------ttt
                    Ferret   g---attgcctg-ccaggg-gcatggcatatatata------------------tattt--------ttt
                      Panda  g---attgcctt-agaggt-gaatggcatatatata---tatatatatttttttttttt--------ttt
             Pacific walrus  g---attgcctg-ccaggt-gaatggcatgtgt---------------------ttttt--------ttt
               Weddell seal  g---attgcctg-ccaggt-gaatggcatatatata------------------tattg--------ttt
           Black flying-fox  ---------ttg------g-atatggcacata-------------------------gg--------ttt
                    Megabat  ---------ttg------g-atatggcacata-------------------------gg--------ttt
              Big brown bat  t---gttgcttg-ccaggt-atatggcacata-------------------------gt--------ttt
       David's myotis (bat)  t---gttgcctgcccaggt-atatggcacata-------------------------gt--------ttt
                   Microbat  t---gttgcctgcccagat-ttatggcacata-------------------------gt--------ttt
                   Hedgehog  g---attgcctg-ctgtgt-atactgcatgtttgttgttgttgttgttgttgttgttgt--------ttt
                      Shrew  tgggattgcctg-ccaggt-agttggcatgcatttt----------------------t--------ttc
            Star-nosed mole  t---cttggctg-ccaggt-acgtggcatgtagtt-----------------------------------
                   Elephant  g---attgtcca-ccagat-ttacatcacgta-------------------------tt--------ttt
        Cape elephant shrew  g---attgcctg-ccaggt-gtatatcacaga-------------------------ttaccccccaccc
                    Manatee  g---actgtctg-ccaggt-ctacatcacata-------------------------tt--------ttt
           Cape golden mole  g---gttg--------------------------------------------------------------
                     Tenrec  g---agtg--------------------------------------------------------------
                   Aardvark  g---actgcctg-ccaagt-ttatatcacata-------------------------ct------ttttt
                  Armadillo  g---attacctg-ccaggt-atccagtttgta-------------------------tt--------att
                    Opossum  g---------tg-acggac--------------------------------------cc--------tgt
            Tasmanian devil  g---------tg-acagat--------------------------------------gc--------cgt
                    Wallaby  a---------tg-acagac--------------------------------------at--------cat
                   Platypus  c---ggtggctc-tccggc-ccacgggcggca----------------------ggtag--------ctt
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
        Medium ground finch  ======================================================================
     White-throated sparrow  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                     Parrot  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================
         American alligator  ======================================================================

                      Human  tccttggcagag
                      Chimp  tccttggcagag
                    Gorilla  tcctgggcagag
                  Orangutan  tccttggcagtg
                     Gibbon  tccttggcagag
                     Rhesus  tccttggcagag
        Crab-eating macaque  tccttggcagag
                     Baboon  tccttggcagag
               Green monkey  tccttggcagag
                   Marmoset  tccttagcagag
            Squirrel monkey  tccttagcagag
                   Bushbaby  ttcttggtgg--
         Chinese tree shrew  cccttggcaggg
                   Squirrel  tccttggcagag
     Lesser Egyptian jerboa  cccttgacagag
               Prairie vole  cctttggcagag
            Chinese hamster  cctttggcagag
             Golden hamster  cctttgtcagag
                      Mouse  ccctgggcagag
                        Rat  cccttggcagag
             Naked mole-rat  tccttggcagag
                 Guinea pig  ccctcggcagag
                 Chinchilla  tccttggcagag
           Brush-tailed rat  tccttggcagtg
                     Rabbit  tccttagcagag
                       Pika  cccttgataggg
                        Pig  cct-tggcagag
                     Alpaca  ccctttgcagag
             Bactrian camel  ccctttgcagag
                    Dolphin  cccttggcagag
               Killer whale  cccttggcagag
           Tibetan antelope  ccc-tggtagag
                        Cow  ccc-tggcagag
                      Sheep  ccc-tggcagag
              Domestic goat  ccc-tggcagag
                      Horse  tccttggcagag
           White rhinoceros  gccttggcagag
                        Cat  tccttggcagag
                        Dog  cccttggcagaa
                    Ferret   tccatggca-ag
                      Panda  tccttgtaagag
             Pacific walrus  tccttggcagag
               Weddell seal  tccttggcagag
           Black flying-fox  tccttggtggag
                    Megabat  tccttggcagag
              Big brown bat  tccttggca---
       David's myotis (bat)  tccttg------
                   Microbat  tccttg------
                   Hedgehog  cccttgacagaa
                      Shrew  cccttggcacat
            Star-nosed mole  -ccttggcagag
                   Elephant  tccttggcagag
        Cape elephant shrew  cccttagaagaa
                    Manatee  tccttggcagag
           Cape golden mole  ------------
                     Tenrec  ------------
                   Aardvark  tctttggcagag
                  Armadillo  ttcctggcaggt
                    Opossum  gccgtgc-----
            Tasmanian devil  gcttggg-----
                    Wallaby  tctttgg-----
                   Platypus  cgcttggaggag
        Princess of Burundi  ============
               Nile tilapia  ============
                  Tetraodon  ============
                Zebra mbuna  ============
                  Zebrafish  ============
                 Coelacanth  ============
                Spotted gar  ============
        Pundamilia nyererei  ============
      Burton's mouthbreeder  ============
            Green seaturtle  ============
        Collared flycatcher  ============
              X. tropicalis  ============
                 Budgerigar  ============
              Scarlet macaw  ============
        Medium ground finch  ============
     White-throated sparrow  ============
           Peregrine falcon  ============
               Saker falcon  ============
                     Turkey  ============
                    Chicken  ============
                     Lizard  ============
                Zebra finch  ============
             Painted turtle  ============
         Tibetan ground jay  ============
                     Parrot  ============
                Rock pigeon  ============
               Mallard duck  ============
         American alligator  ============

Inserts between block 11 and 12 in window
B D               Platypus 3590bp

Alignment block 12 of 1514 in window, 98248142 - 98248494, 353 bps 
B D                   Human  gccctgacagg----------------ggc---tggggtccg-tgtta---------cctcag----cag
B D                   Chimp  gccctgacagg----------------ggc---tggggtccg-tgtta---------cctcag----cag
B D                 Gorilla  gccctgacagg----------------ggc---tggggtcca-tgtta---------cctcag----cag
B D               Orangutan  gccctgacagg----------------ggc---tggggtcca-tgtta---------cctcag----cag
B D                  Gibbon  gccctgac--g----------------ggc---tggggtcca-tgtta---------cctcag----cag
B D                  Rhesus  gccctgacagg----------------gcc---tgggatcca-tgtta---------cctcag----cag
B D     Crab-eating macaque  gccctgacagg----------------gcc---tgggatcca-tgtta---------cctcag----cag
B D                  Baboon  gccctgacagg----------------gcc---tgggatcca-tgtta---------cctcag----cag
B D            Green monkey  gccctgacagg----------------gcc---tgggatcca-tgtta---------cctcag----cag
B D                Marmoset  gccctggcagaggggccttagcagaggggc---tggggtgca-tgtta---------cctcag----cag
B D         Squirrel monkey  gccctggcaaa----------------ggc---tggggtgca-tgtta---------cctcag----cag
B D                Bushbaby  ----------g----------------gag---tggggtcca-tatta---------cctcaa----cag
         Chinese tree shrew  g-cctggca-g----------------ggc---tggggtccg-aatta---------cctccg----cag
B D                Squirrel  accctgataga----------------gac---tggggtcca-tat-a---------ctttag----cag
     Lesser Egyptian jerboa  g-actgacaaa----------------ggc---t-gagtctg-tatga---------ccacagtagtctt
               Prairie vole  gccctgacaga----------------gac---a-gagttta-tgtga---------cctcag----ctg
B D         Chinese hamster  gtcctgac--a----------------gac---t-gagttta-tgtga---------cctcgg----ctg
             Golden hamster  gtcctgac--a----------------gac---t-gagttta-tgtga---------cctcag----ctg
B D                   Mouse  gtcctccg--a----------------ggc---t-gaattca-tgtga---------cctcag----cct
B D                     Rat  gtcctcaa--a----------------ggc---t-gaact---tgtga---------cctcag----ctg
B D          Naked mole-rat  gccttgacaca----------------agc---tgggatctg---tta---------ccttag------g
B D              Guinea pig  accctgacaca----------------agc---tgggatctg-tatta---------cctcaa------g
                 Chinchilla  gccttggcaca----------------agc---tgggatctg-tatta---------cctcag------g
           Brush-tailed rat  gccttgataca----------------agc---taggatctg-tctca---------cctcag------g
B D                  Rabbit  gtcctggcagg----------------agc---tgaggtccc-tgtta---------gctcag----tgg
B D                    Pika  gccctggcagg----------------ggc---tgaggtccc-tatta----------ctcca----tgg
B D                     Pig  gccctggcagt----------------ggc---tagggtcca-catta---------gcccag----cgg
B D                  Alpaca  gctgagacagt----------------ggc---tggggtcca-tgtta---------ccccag----cag
             Bactrian camel  gctgagacagt----------------ggc---tggggtcca-tgtta---------ccccag----cag
B D                 Dolphin  ggcctggcagc----------------agc---tggggtcca-cagca---------ccccgg----gac
               Killer whale  ggcctggcagc----------------agc---tggggtcca-cagca---------ccccgg----gac
           Tibetan antelope  accctggcagc----------------agc---tggggtcta-cattg---------ccccag----tca
B D                     Cow  a-cctggcagc----------------agc---tggggtcta-cactg---------ccccag----tca
B D                   Sheep  accctggcagc----------------agc---tggggtcta-cattg---------cccccg----cca
              Domestic goat  accctggcagc----------------agc---tggggtcta-cattg---------ccccag----cca
B D                   Horse  gccctagcagg----------------ggc---tggagtcca-tatta---------ccccag----cag
B D        White rhinoceros  gccctggcagg----------------gcc---tggagtcca-tatta---------ccccag----cag
B D                     Cat  gccctggcagg----------------ggc---cggggtcca-tgtta---------tcgcag----cag
B D                     Dog  gccctggcagg----------------ggc---tggggtcca-tacta---------ctgcag----tag
B D                 Ferret   gccctggcaag----------------ggc---tggagtcca-tacca---------ccacag----caa
B D                   Panda  gccctggtggg----------------ggc---tgggatcca-tacta---------ttgcag----cag
             Pacific walrus  gtcctggc-ag----------------ggc---tggggtcca-tccta---------ctgcag----cac
               Weddell seal  gtcctggc-ag----------------ggc---tgggatcca-tccta---------ctgcag----cag
           Black flying-fox  gccctgactgg----------------gac---tagggtcca-tattatccatattatctcag----cag
B D                 Megabat  gccctgactgg----------------gac---tagggtcca-tattatccatattatctcag----cag
              Big brown bat  ---------gg----------------ggc---tggggtcca-tatta----------cccag----cag
       David's myotis (bat)  --------------------------------------------------------------g----cag
B D                Microbat  --------------------------------------------------------------g----cag
B D                Hedgehog  gccctgacagg----------------agc---taggattcattattt---------ccccga----caa
B D                   Shrew  gccttggcaag----------------gac---taggatccg-tatac---------ccccag----cag
            Star-nosed mole  gccctggcagg----------------ggc----agggtcca-tat-c---------gcccag----cag
B D                Elephant  g-cctggcagg----------------aac---tggggtcca-tatta---------ctgcag----cag
        Cape elephant shrew  g-tctgtcaaa----------------gat---ttgggtcca-tagta---------ccctag----cag
B D                 Manatee  a-cctggcagg----------------aac---tagggtcca-tatta---------ccccag----cag
           Cape golden mole  --cctggcagg----------------ggtgggtggggccca-tatta---------tcccag----tag
B D                  Tenrec  --cctagcagg----------------agc---ttgggtcta-gataa---------ctccag----cag
                   Aardvark  g-cctggcagg----------------ggt---tagagtcca-tatca---------ccctag----cag
B D               Armadillo  gccccagtagg----------------ggc---cggggtgca-tatta---------tcctag----cag
B D                 Opossum  -----gacaaa----------------ggc---c-----cct-tatgg---------aggccg----ctg
B D         Tasmanian devil  ------gcgag----------------ggc---c-----ctc-ggctt---------gtccca----gag
B D                 Wallaby  -----cgcaaa----------------ggc---t-----cct-ggcat---------gcccta----gag
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================
B D               Zebrafish  ======================================================================
B D              Coelacanth  ======================================================================
               Spotted gar  ======================================================================
       Pundamilia nyererei  ======================================================================
     Burton's mouthbreeder  ======================================================================
  D         Green seaturtle  ======================================================================
  D     Collared flycatcher  ======================================================================
B D           X. tropicalis  ======================================================================
B D              Budgerigar  ======================================================================
  D           Scarlet macaw  ======================================================================
B D                Platypus  ======================================================================
B D     Medium ground finch  ======================================================================
  D  White-throated sparrow  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
B D                  Turkey  ======================================================================
B D                 Chicken  ======================================================================
B D                  Lizard  ======================================================================
B D             Zebra finch  ======================================================================
  D          Painted turtle  ======================================================================
        Tibetan ground jay  ======================================================================
  D                  Parrot  ======================================================================
  D             Rock pigeon  ======================================================================
  D            Mallard duck  ======================================================================
B D      American alligator  ======================================================================

                      Human  tctt--tctgcttggcctactct----t-gctgctctgt--agg-aaggccctatctggccattt-----
                      Chimp  tctt--tctgcttgacctacgct----t-gctgctctgt--agg-aaggccctatctggccattt-----
                    Gorilla  tctt--tctgcttggcctactct----t-gctgctctgt--agg-aaggccctatctggccattt-----
                  Orangutan  tctt--tctgcttggcctactct----t-gctgctctgt--agg-aaggccctatctggccattt-----
                     Gibbon  tctt--tctgcttggcctactct----t-gctgctctgt--agg-aaggccctatctggccattt-----
                     Rhesus  tctt--tctgcttggcctactct----t-gctgctctgt--agg-aaggccctatctggccattt-----
        Crab-eating macaque  tctt--tctgcttggcctactct----t-gctgctctgt--agg-aaggccctatctggccattt-----
                     Baboon  tctt--tctgcttggcctactct----t-gctgctctgt--agg-aaggccctatctggccattt-----
               Green monkey  tctt--tctgcttggcctactct----t-gctgctctgt--agg-aaggccctatctggccattt-----
                   Marmoset  tctt--tctgcttggcttactct----c-actgctctgt--agg-aaggccctctctggccattt-----
            Squirrel monkey  tctt--tctgcttggcttactct----t-gctgctctgt--agg-aaggccctatctggccattt-----
                   Bushbaby  tctt--tctaa--ggcctactct----tagttgctctgt--ggg-aaggcactg---ggccactt-----
         Chinese tree shrew  tctt--tctgcctggctgctttt----c-accgcccttc--agg-aagacctcatgtggccactt-----
                   Squirrel  tctttctttgatct----tctct----t-gctgttctgc--agg-aaggccccatctgggctctt-----
     Lesser Egyptian jerboa  tctt--cttga-------actct----t-actgctctgc--agggaaggccctgccttgccactt-----
               Prairie vole  tctt--cttga-------tctct----c-gctgctctgc--aggaaaggccctgtcttgccattc-----
            Chinese hamster  tctt--cttga-------tctct----c-gctgctctgt--gggaaacgccctgtcttgccactt-----
             Golden hamster  tctt--cttaa-------taact----c-gttgctctgt--gggaaaggccctgtcttg-----------
                      Mouse  tcgt--cttgc-------tttct----g-actactctgc--aggaaaggccctgtctcgtca-tt-----
                        Rat  tctt--cttga-------tttct----t-gctactcttc--aggaaaggccctgtcttgcca-tt-----
             Naked mole-rat  cctt--ct-------------cc----t-gctgctctgc--agg-aaggccttatctgaccactt-----
                 Guinea pig  cctt------------------c----t-gctgctttgcaaagg-gaggccgtatctgaccactt-----
                 Chinchilla  cctt------------------c----t-gctgctttgc--aga-aaggccttatctgatcactt-----
           Brush-tailed rat  cctt------------------c----t-gcggctttgc--agg-aaggcctc-tctcaccactc-----
                     Rabbit  tctt--cttgcttg----gccttcttgt-gctgctctgc--aga-aaggccctgtctagccgtgt-----
                       Pika  tctt--tctgctta----acctt----t-gctgccttgc--aca-aaagacctgtctggcc---------
                        Pig  tctt--tctgcttggcctcctct----t-gctgttctgg--agg-aaggccctatctggcaactt-----
                     Alpaca  tctt--tctgcctggctttctct----t-gctgctctgc--atg-aaggccctatctggctactt-----
             Bactrian camel  tctt--tctgcctggccttctct----t-gctgctctgc--atg-aaggccctatctggctactt-----
                    Dolphin  tctt--tctgttcggcctcctct----t-gctgctctgc--ggg-aaggccatatctggccactc-----
               Killer whale  tctt--cctgttcggcctcctct----t-gctgctctgc--ggg-aaggccatatctggccactc-----
           Tibetan antelope  tctt--tcttttgggccttctct----t-gctgctctgc--agg-aaggctgtatctggccactt-----
                        Cow  cctt--tcttttgggccttctct----t-gctgctctgc--agg-aaggctgtatctggccactt-----
                      Sheep  tctt--tcttttgggccttctct----t-gctgctctgc--agg-aaggctgtatctggccactt-----
              Domestic goat  tctt--tcttttgggccttctct----t-gctgctctgc--agg-aaggctgtatctggccactt-----
                      Horse  tctt--tctgcttggccttctct----t-gctgctctgc--agg-aaggccc-atctggccactt-----
           White rhinoceros  tctt--tctgcttggccttctct----t-gctgttctgc--agg-aaggccctatctggccactt-----
                        Cat  cctt--tctgcttggacttctct----t-gctgctctgt--agg-aagaccctatctggccactt-----
                        Dog  t--c--tctgcttggccttctct----t-gctgctctgt--agg-aaagccctatctggccacct-----
                    Ferret   tctt--tctgcttggccttctct----a-gctcttttgt--agg-aaggccccatctggccagct-----
                      Panda  tcct--tctgcttggccttctct----t-gctgttctgt--agg-aaggccctatctggccacat-----
             Pacific walrus  t---------cttggccttctct----t-gctgttctgt--agg-aaggccctatctggccacct-----
               Weddell seal  tctt--tctgcttggccttctct----c-gctgttctgt--agg-aaggccctatctgaccacct-----
           Black flying-fox  tctt--tttgcttgaccttctct----t-gctgc----------------cctgtctggccactt-----
                    Megabat  tctt--tttgcttgaccttctct----t-gctgc----------------cctgtctggccactt-----
              Big brown bat  actt--tatgcttttttttctct----t-attgctctgc--agg-aagaccctatctggtcactt-----
       David's myotis (bat)  actt--tctgc-tttttttcttt----t-attgctctgc--agg-aaggtcctgtctggtcactt-----
                   Microbat  actt--tctgc-tttttttcttt----t-atcgctctgc--agg-aaggccttgtctggtcactt-----
                   Hedgehog  cctt--tctgcttggcctt----------gctgctttac--agg-aagactgtgtgt--tcattt-----
                      Shrew  tctt--tctgcttgacc------------------------------gtctcttgct--tctctg-----
            Star-nosed mole  tctt--tctgggtggcctc-----------tggcgcttc--agg-aaggcccctacc--tagctg-----
                   Elephant  tctt--tctgcttggtcttctc-------gctgctcggc--agg-aagtcctgacctggccacct-----
        Cape elephant shrew  tctt--tctgtttgaccttctc--------ttgc---ag--agg-aaggtctgacccagccatct-----
                    Manatee  tctt--tctccttggtcttctct----t-gctgctctgc--agg-aaggcct-acttggccacct-----
           Cape golden mole  cttt--tctgcttggccttttct----t-gctgctctgc--agg-atggctctactcggccactt-----
                     Tenrec  ---t--ccagcttggccttctct----t-tctgctctgc--agg-aaggccctccctgcctgcttccctc
                   Aardvark  tctt--tcttcttggccttctc--------------tac--agg-aaggccctacgtggcctcct-----
                  Armadillo  tctt--tctgcttggccttctct----t-gctgctctgc--agg-aaggccc--------taact-----
                    Opossum  ttct--g---------------t----g-acctccacat--acg-------------------tc-----
            Tasmanian devil  ccca--gat------------ct----t-gccatccacc--gtg-------------------tt-----
                    Wallaby  ccct--gat------------tt----t-actatcccag--gtg-------------------tt-----
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
                   Platypus  ======================================================================
        Medium ground finch  ======================================================================
     White-throated sparrow  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                     Parrot  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================
         American alligator  ======================================================================

                      Human  --------------------------------ctg--tgaaacttgc---cccttctcaagcactccgta
                      Chimp  --------------------------------ctg--tgaaacttgc---cccttctcaagcactccgta
                    Gorilla  --------------------------------ctg--tgaaacttgc---cccttctcaagcactccgta
                  Orangutan  --------------------------------ctg--tgaaacttgc---cccttctcaagcgctccgta
                     Gibbon  --------------------------------ctg--tgaaacttgc---cccttctcaagcactcagta
                     Rhesus  --------------------------------ctg--tgaaacttgc---cccttctcaagcactcagta
        Crab-eating macaque  --------------------------------ctg--tgaaacttgc---cccttctcaagcactcagta
                     Baboon  --------------------------------ctg--tgaaacttgc---cccttctcaagcactcagta
               Green monkey  --------------------------------ctg--tgaaacttgc---cccttctcaagcactcagta
                   Marmoset  --------------------------------ctg--tgaaacttgc---ccctt---aagcactcagta
            Squirrel monkey  --------------------------------ccg--tgaaacttgc---cccttctcaagcactcagta
                   Bushbaby  --------------------------------ctg--tgaaatttgc---ctcttctcaagcactcatta
         Chinese tree shrew  --------------------------------ctg--tgaaacttgg---ccattctcgagcactcagta
                   Squirrel  --------------------------------ctg--tgaaacttgt---cttttctcaaatactcaata
     Lesser Egyptian jerboa  --------------------------------ctg--tgaaacttgc----ccttcatcaagcctcagta
               Prairie vole  --------------------------------ctg--tgagacttgc---ctcccacctcagccccagta
            Chinese hamster  --------------------------------ctg--tgaaacttgc---ctcccgccccagccccagga
             Golden hamster  -----------------------------------------------------ccgccccagccccagga
                      Mouse  --------------------------------ctg--tgaaacttgc--------tccccagccccaata
                        Rat  --------------------------------ctg--ggtaacttgccaccaccacccccagccccagta
             Naked mole-rat  --------------------------------ctg--tgaaacttgc---cccttctcaagcactcagta
                 Guinea pig  --------------------------------ctg--tgaaacttgc---tccttctcaagcattcagta
                 Chinchilla  --------------------------------cta--tgaaacttgc---ccccgctcaaacactcagta
           Brush-tailed rat  --------------------------------cta--tgaaacttgc---cccttctcagacagtcagta
                     Rabbit  --------------------------------ctg--tgaaacttgc----ccttctcgagcactcagta
                       Pika  ----------------------------------a--tgaaacttgc----ccttctcgagcgctcagta
                        Pig  --------------------------------ctg--tggatcgtgt---cctttctcaggcactcagta
                     Alpaca  --------------------------------ctg--tgcctctagc---cccttcgcaagcactcagtg
             Bactrian camel  --------------------------------ctg--tgactctagc---cccttctcaagcactcagtg
                    Dolphin  --------------------------------ctg--tgaatcttgc---cccgtctcaagcactcggta
               Killer whale  --------------------------------ctg--tgaatcttgc---cccgtctcaagcgctcagta
           Tibetan antelope  --------------------------------ctg--tgaatcctgc---cctgtctcaagcactcagga
                        Cow  --------------------------------cgg--tgaatcctgc---cctgtctcaagcactcagga
                      Sheep  --------------------------------ctg--tgaatcctgc---cctgtctcaagcactcagga
              Domestic goat  --------------------------------ctg--tgaatcctgc---cctgtctcaagcactcagga
                      Horse  --------------------------------ctg--tgaatcttgc---cccttctcaagcactcagta
           White rhinoceros  --------------------------------ctg--cgaatattgc---cccttctcaagcactcagta
                        Cat  --------------------------------ctg--caagtcctgc---cccttctcaagcactcagta
                        Dog  --------------------------------ctg--caaatcctgc---cccttctcaagcacccagta
                    Ferret   --------------------------------ctg--caaatcctgc---cccttctcaagcactcagta
                      Panda  --------------------------------ctg--caagtcctgc---cccttctcaagcactcagta
             Pacific walrus  --------------------------------ctg--caaatccttc---cccttctcaagcactcagta
               Weddell seal  --------------------------------ctg--caaatcctgc---cccttctcaagcactcagta
           Black flying-fox  --------------------------------ctg--caaatgttgc---cccttctcaagcagtcagta
                    Megabat  --------------------------------ctg--caaatcttgc---cccttctcaagcagtcagta
              Big brown bat  --------------------------------ctg--caaatcttgc---cccttctcaagcactcagca
       David's myotis (bat)  --------------------------------ctg--caaatcttac---tccttctcaagcactcagca
                   Microbat  --------------------------------ctg--caaatcttgc---cccttctcaagcactcagca
                   Hedgehog  --------------------------------cta--tgaatctggc---cccttcttgaggacccagta
                      Shrew  --------------------------------ctgaccactcctgtg---aacgccttgagcactcagcg
            Star-nosed mole  -------------------------------actgggtgcatcttcc---cccttcttaagcactcagtc
                   Elephant  --------------------------------atg--tgaaacttgt---cccttcttgagcactcagta
        Cape elephant shrew  --------------------------------ctg--tgaaacttgt---ctcttgtcatgtactcactg
                    Manatee  --------------------------------ctg--tgaaccttgt---cccttctcaggcactcagta
           Cape golden mole  --------------------------------ctg--tgaaacttgc---cccattgcaagcactcagta
                     Tenrec  ccctcccacctcccccaccccccaccctccgccct--tgatatttgt---cccttctcaagcactcagtg
                   Aardvark  --------------------------------cgg--tgaaacctgt---ccc---tcaagcactcagta
                  Armadillo  --------------------------------ctg--tgaaacctgc---cctttctcaagatctcagta
                    Opossum  --------------------------------ctc--acagac---------------------------
            Tasmanian devil  --------------------------------ttc--tcgggccatc-----------------------
                    Wallaby  --------------------------------ttc--tcaggccatt---c-------------------
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
                   Platypus  ======================================================================
        Medium ground finch  ======================================================================
     White-throated sparrow  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                     Parrot  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================
         American alligator  ======================================================================

                      Human  actgt-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-gaggtctgtgcttccaagg
                      Chimp  actgt-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-gaggtctgtgcttccaagg
                    Gorilla  actgt-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-gaggtctgtgcttccaaag
                  Orangutan  actgt-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-aaggtctgtgcttccaagg
                     Gibbon  actgt-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-gaggtctttgcttccaagg
                     Rhesus  actgt-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-gaggtctgtgcttccaagg
        Crab-eating macaque  actgt-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-gaggtctgtgcttccaagg
                     Baboon  actgt-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-aaggtctgtgcttccaagg
               Green monkey  actgt-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-gaggtctgtgcttccaagg
                   Marmoset  actgg-tg--gt-gttggcc------catcaggcaataaagg-gatgccc-aaggtctatgcttctaagg
            Squirrel monkey  actgg-tg--gt-gttggcc------catcaggcaataaggg-gatgccc-aaggtctgcacttctaagg
                   Bushbaby  actgg-tg--at-gttggct------gttcaggcaggaa--g-gatgcct-gaggccttagcttccagga
         Chinese tree shrew  actgg-------------------------gggaaataaggg-gctgcct-gtggccggaacttccaagg
                   Squirrel  attgg-tg--at-gttgacc------catcagtagataatgg-gatgcct-gaggcctgagattgcagga
     Lesser Egyptian jerboa  agtag-gg--gt-cttgacc------catcaggaaatgatgg-gatgcct-gaagtctgagtgta-aagg
               Prairie vole  ctgag-gg--gtggttgatc------catcaggaaatggagg-gaggcct-gagggttcag-------gg
            Chinese hamster  attgg-gg--at-gttgatc------catcaggaaatggagg-gaggcct-gagggtcca--------gg
             Golden hamster  attgg-ggatat-gttgacc------catcaggaaatggaag-ggggcct-gagagtct---------gg
                      Mouse  atcga-gg---t-gttgacc------catcaggaaatgg-ag-gaggcct-gagggttcag-------gg
                        Rat  atcag-ga---t-gttgatc------catc----------ag-gaggctt-gagggttcag-------gg
             Naked mole-rat  actcc-tg--gt-gttgatc------catcaggagatgatgg-gattgct-gaggcttaaatttgtaggg
                 Guinea pig  actgc-tg--gt-gttgact------catcaggaagtaatgt-aattcct-gaggcttaaatta----gg
                 Chinchilla  agtgg-tg--gt-gttgatc------catcaggaagtaatgg-gattcct-gaggcttaaatttgtcggg
           Brush-tailed rat  gctgg-tg--gt-ggtgttc------catcaggaagtgatgg-gattcct-gaggcttagatttgtc-aa
                     Rabbit  cctgg-ca--gt-gttggcc------attcaggagattaggg-gatgcc--gaggcctaagcttctgggg
                       Pika  actgg-tg--at-gttgttc------catcaggaggtcaggg-tatgcct-gaggcctaagctttcatgg
                        Pig  actgc-tg--gt-ttgggcc------catta--------ggg-gatgcct-gaggcctaagcttccaggg
                     Alpaca  actgg-tg--gg-tttggcc------catcaggagaaaaggg-gatgcct-gaggcctaagcttccaggg
             Bactrian camel  actgg-tg--gg-tttggcc------catcaggagataaggg-gatgcct-gaggcctaagcttccaggg
                    Dolphin  actgg-tg--gt-ttgggcc------cgtcaggagataaggg-gatgcct-gaggcctaagcttccaggg
               Killer whale  actgg-tg--gt-ttgggcc------cgtcaggagataaggg-gatgcct-gaggcctaagcttccaggg
           Tibetan antelope  actgg-tg--gt-ttgggcc------catcaggagataaggg-gatgcct-aaggcctaaggctccaagg
                        Cow  actgg-tg--gt-ttgggcc------catcaggagataaggg-gatgcct-aaggcctaagcctccaagg
                      Sheep  actgg-tg--gt-ttgggcc------catcaggagatagggg-gatgcct-aaggcctaagcctccaagg
              Domestic goat  actgg-tg--gt-ttgggcc------catcaggagataaggg-gatgcct-aaggcctaagcctccaagg
                      Horse  actgg-tg--gt-attggcc------catcaggacataaggg-gatgcct-gaggcctaagcttccaggg
           White rhinoceros  actgg-tg--gt-gttggcc------catcaggacgtaaggg-gatgcct-gaggcctaagcttccaggg
                        Cat  attgg-tg--gt-gttggcc------catcaggagataaggg-gatgcct-gaggcctaagcttcca-gg
                        Dog  actgg-tg--gt-ggtggcc------cattgggagaaaaggg-gatgcct-gaggcctacacttcca-gg
                    Ferret   acggg-tg--gt-gttggct------catcagaagataaggg-gatgcct-gaggcctatgcttcca-ga
                      Panda  actgg-cg--gt-gttggcc------catcaggagacaagag-gatgcct-gaggcctacgcttcca-gg
             Pacific walrus  actgg-tg--gt-gttggcc------catcaggagataaggg-gatgcct-gaggcctatgc--------
               Weddell seal  actgg-tg--gt-gttggcc------catcaggatataaggg-gatgcct-gaggcctatgcttcta-gg
           Black flying-fox  actg----------ttggcc------catcagaagataagga-gatgcct-gaagcctaagcttccaggc
                    Megabat  actg----------ttggcc------catcagaagataagga-gatgcct-gaagcctaagcttccaggg
              Big brown bat  actgg-tg--gt-gttggcc------catcaggagataaggg-gatgcct-gaggcccacgtttccaggg
       David's myotis (bat)  actgg-tg--gt-gttggcc------catcaggagataaggg-gatgcct-gaggcccacgcttccaggg
                   Microbat  actgg-ta--gt-cttggcc------catcaggagataaggg-gatgcct-gaggcccacgcttccaggg
                   Hedgehog  actgg-tg--gt-gtt-ggc------c--caggagataaggg-g---atc-gaaaaatat----------
                      Shrew  actgg-tg--gt-g---gct------gagggggagaggcagg-actgccc-gagacctaagcttc-----
            Star-nosed mole  cctgc-tg--gt-gtt-gcc------cgtcaggacatagggg-a-tgcct-gaggcctaagcttctgggg
                   Elephant  actga-tg--gt-acagccg------cattaggagataaggg-gatgcct-gaggccttagcttccaggg
        Cape elephant shrew  acctc-tg--gt-gttagcc------aatgagaagataagggagatggct-gaggccttagcttccagca
                    Manatee  accaa-tg--gt-gtaggcc------catcaggagataaggg-gatgcct-gaggccttaggttccaggg
           Cape golden mole  accaa-tg--gt-ataggcc------catcagga---------gat-----aaggccttagcttccaagg
                     Tenrec  agtga-gg--gt-gtaggcc------cagcagga---------gttgcctgaggaccttagctcccaggg
                   Aardvark  accaa-tg--gt-gtgggcc------catcaggagttaaggg-gatgcct-gaggccttagcttccaggg
                  Armadillo  acccattg--gt-gtcagcc------cattaggagataaggg-gaagctt-gaggcctaagtgtccaggg
                    Opossum  ----a-cg--gg-g------------------------aggg-gggaccc-cacacccaggtttccaggg
            Tasmanian devil  ----a-tg--cg-gttgacctcgtggcatcaggagct-agtg-gtgacca-gagacccaagttgctggga
                    Wallaby  -ttaa-tt--ac-ataaatctcttcatatcaggcatt-agtg-gtgaccc-gagacctaagttgccagaa
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
                   Platypus  ======================================================================
        Medium ground finch  ======================================================================
     White-throated sparrow  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                     Parrot  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================
         American alligator  ======================================================================

                      Human  ataata-ga--aaca-c--ccatg-tgtgtggtaaga-t---a-----------------------aagg
                      Chimp  ataata-ga--aaca-c--ccatg-tgtgtggtaaga-t---a-----------------------aagg
                    Gorilla  ataata-ga--aaca-c--ccatg-tgtgtggtaaga-t---a-----------------------aagg
                  Orangutan  ataata-ga--aaca-c--ccatg-tgtgtggtagga-t---a-----------------------aagg
                     Gibbon  ataata-ga--aaca-c--ccatg-tgtgtggtagga-t---a-----------------------aagg
                     Rhesus  ataata-ga--aaca-c--ccatg-tgtgtggtagga-t---a-----------------------aagg
        Crab-eating macaque  ataata-ga--aaca-c--ccatg-tgtgtggtagga-t---a-----------------------aagg
                     Baboon  ataata-ga--aaca-c--ccatg-tgtgtggtagga-t---a-----------------------aagg
               Green monkey  ataata-ga--aaca-c--ccatg-tgtgtggtagga-t---a-----------------------aagg
                   Marmoset  atagca-ga--agca-c--ccatg-tgtgtggctgga-t---a-----------------------aagg
            Squirrel monkey  atagca-ga--agca-c--ccgtg-tgtgtggttgga-t---a-----------------------aagg
                   Bushbaby  gagtca-ga--aata-c--ccatg-tgtagggtagga-t---t-----------------------aaga
         Chinese tree shrew  gcgttagga--aaca-c--ccgta-agtgcgacagga-----a-----------------------aggg
                   Squirrel  gtttta-ca--aaca-g--cctta-tatgcaataaga-t---a-----------------------aagg
     Lesser Egyptian jerboa  atatta-aa--aacc-t--ca-ca-tgtgtggttgga-c---a-----------------------aagg
               Prairie vole  gtgtta-ga--gaca-c--ct-gg-tgtgggacagaa-t---g-----------------------aaga
            Chinese hamster  gtatta-ga--aaca-c--cc--c-tgtgtgacacag-t---g-----------------------aagg
             Golden hamster  gtatta-ca--aac----------------------------g-----------------------aagg
                      Mouse  atattg-ga--aaca-c---c--a-tgtgtgaccgaa-t---g---------aaggtaaagatg-caagg
                        Rat  gtatta-ga--aatg-t--ac--g-tgtgtgtgtgtg-t---gtgtgtgtgtgtggtaaaactgccaagg
             Naked mole-rat  gtatta-ga--aaca-c--ccagg-gatatgacagga-t--aa-----------------------aagg
                 Guinea pig  gtatta-ga--aaca-c--ccagc-tatatggcaggg-t---a-----------------------aagg
                 Chinchilla  gtgtta-ga--aaca-c--ccagg-tgtacgaaagga-t---a-----------------------aagg
           Brush-tailed rat  gtttta-ga--aaca-c--ccgaa-tgtatggcagga-t---a-----------------------aagg
                     Rabbit  g-------------------------gtgcagtagga-t----------------------------agt
                       Pika  gtggta-gg--aaca-c--ccctg-tgtgcaacagga-t---a-----------------------aagt
                        Pig  gtatta-ca--gaca-c--ctatg-tgtgcaggagga-----g-----------------------aagg
                     Alpaca  atatca-ga--aata-c--ccata-cgtgcagtagga-t---a-----------------------aagg
             Bactrian camel  atatca-ga--aata-c--ccata-cgtgcagtagga-t---a-----------------------aagg
                    Dolphin  -tatta-ga--aaca-c--ccata-tgtgcagtagga-t---a-----------------------aagg
               Killer whale  atatta-ga--aaca-c--ccata-tgtgctgtagga-t---a-----------------------aagg
           Tibetan antelope  acatta-gc--aacagc--ccata-tgtgcaggagga-t---a-----------------------aagg
                        Cow  acatta-ga--aacagc--ccata-tgtgcaggagga-t---a-----------------------aagg
                      Sheep  acatta-gc--aacagc--ccata-tgtgcaggagga-t---a-----------------------aagg
              Domestic goat  acatta-gc--aacagc--ccata-tgtgcaggagga-t---a-----------------------aagg
                      Horse  atatta-ga--aaca-c--ccata-tgtgtggtagga-t---a-----------------------aagg
           White rhinoceros  atatta-ga--aata-c--ccaca-tttgcggtagga-t---a-----------------------aagg
                        Cat  atatta-ga--aaca-c--ccata-tgtgcagtagga-t---a-----------------------aagc
                        Dog  atatta-ga--aaca-t--ccata-tgtgcagtagga-t---a-----------------------aagg
                    Ferret   agcata-ga--aaca-c--ccata-tgtg-ggtagga-t---a-----------------------aagg
                      Panda  atatta-ga--aaca-c--ccata-tgtgcaatagga-t---a-----------------------aagg
             Pacific walrus  -------aa--aaca-c--ccacagtgtgcagtagga-t---a-----------------------aagg
               Weddell seal  atatta-ga--aaca-c--ccaca-tgtgcagtagga-t---a-----------------------aagg
           Black flying-fox  atatta-ga--aaca-c--ccata-tgtgcagtagga-t---a-----------------------aagg
                    Megabat  atatta-ga--aaca-c--ccata-tgtgcagtagga-t---a-----------------------aagg
              Big brown bat  atattt-ga--aaca-c--tcata-tgtacagtagga-t---a-----------------------aagg
       David's myotis (bat)  atatta-ga--aaca-c--caata-tgtacagtagga-t---a-----------------------aagg
                   Microbat  atatta-ga--aaca-c--ccata-tgtacagtagga-t---a-----------------------aagg
                   Hedgehog  ----tg-gg--aatt-c--ct-ta-tctgtggtaggagt---a-----------------------aagg
                      Shrew  ----ca-ga--aaca-c--cc-cg-tgtgccgtggggtg---a-----------------------aagg
            Star-nosed mole  ctctca-ga--agca-t--ccatg-tgcgtggcagaatt---a-----------------------aaat
                   Elephant  atatta-ga--aacc-c--ctaca-tgggtggtagag-t--aa-----------------------aata
        Cape elephant shrew  gtatta-aa--aaca-t--ctatg-tgtgtggtgga--t--aa-----------------------aaga
                    Manatee  ttatta-gg--aaca-t--ctaca-tgtgcaataggg-t--aa-----------------------aaga
           Cape golden mole  atattt-ga--a-------------------------------------------------------agg
                     Tenrec  atctta-ga--aaca-c--ctata-tgtgtggtagag-t----------------------------aga
                   Aardvark  atatta-ga--aaga-c--ctata-tgtgcggtaggg-ggaaa-----------------------acag
                  Armadillo  atatta-ga--aaca-t--ccatg-tgtgctgtagga-t---a-----------------------taag
                    Opossum  ac-cca-ga--aacc-ccgctgag-tgagggggaggg-t---c-----------------------caga
            Tasmanian devil  gt-tgg-ga----------ctgca-tttggatgagga-t---c-----------------------ccca
                    Wallaby  ---tgg-gacccatg-cagctgag-tatgggtaagga-t---c-----------------------caga
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
                   Platypus  ======================================================================
        Medium ground finch  ======================================================================
     White-throated sparrow  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                     Parrot  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================
         American alligator  ======================================================================

                      Human  taaggacactaaagaac---------------a-ga----g-----tgtgagaggtgagttctaaataac
                      Chimp  taaggacactaaagaac---------------a-ga----g-----tgtgagaggtgagttctaaataac
                    Gorilla  taaggacactaaagaac---------------a-ga----g-----tgtgagagttgagttctaaataac
                  Orangutan  taaggacactaaagaac---------------a-ga----g-----tgtgagaggtgagttctaaataac
                     Gibbon  taaggacactaaagaac---------------a-ga----g-----tgtgaaaggtgagttctaaataac
                     Rhesus  taaggacactaaagaac---------------a-ga----g-----tgtgagaggtgagttgtaaataat
        Crab-eating macaque  taaggacactaaagaac---------------a-ga----g-----tgtgagaggtgagttgtaaataat
                     Baboon  taaggacactaaagaac---------------a-ga----g-----tgtgagaggtgagttgtaaataat
               Green monkey  taaggacactaaagaac---------------a-ga----g-----tgtgagaggtgagttgtaaataat
                   Marmoset  taacgacactaaagaacagactgtt-------a-aa----g-----tgtgagaggtgagttctaaataac
            Squirrel monkey  taaggacactaa--aacagactgttagc----a-ga----g-----tgtgagaggtgagttctaagtaac
                   Bushbaby  ttaggacactgaaaagtagactcttagc----a-gt----g-----tgtgtgaagtgagttctaaatgaa
         Chinese tree shrew  taaggacacagaaggacagactccttgc----a-ga----a-----catgtgcagtgagtactaa--cag
                   Squirrel  taacac-actaaggagcaga------------t--------------gtgagaggcaagttctaaataag
     Lesser Egyptian jerboa  tatag----tcaccagc-------------------------------taagaggtgagttctaaatgtg
               Prairie vole  agaggc--ttcaggggt-------------------------------tgaggtgtgagttctaagtggg
            Chinese hamster  agagg--------------------------------------------------------ctaagtggg
             Golden hamster  atggg-----------------------------------------------gcgtgagttctaagt-gg
                      Mouse  agaggc--ttcagagcc-------------------------------tgagatgcgagttctaagtgag
                        Rat  agaggc--ttcagagcc-------------------------------------------tctgagggag
             Naked mole-rat  taaaaacactaagaagaagactcgttaaagaat--------------atgagaactgagttctaaatgag
                 Guinea pig  taaaaacactaaggagcacactcctggaag--t--------------atgagaagtgagtgctaaatgag
                 Chinchilla  gaaaaacactaaggagcagactcctaagag--t--------------atgagaagtgagttctaaaagag
           Brush-tailed rat  tagaaacactagggagtggactatgaaggg--------------------------gagtgctgagtgag
                     Rabbit  taagactgctgaagaacagacc----------t-gc----a-----gagcagaggtgggttccaagtggg
                       Pika  taagactgctgaaaaacaga------------t-tc----t-----tagtagaggggagttctgaatgag
                        Pig  taagggcactaa-----agactcgtag-----a-ga----a-----tatgacagctgagttctaaatgag
                     Alpaca  gaaggacactgaagaacagactcttag-----a-ga----g-----tatgacagctgagttctaaatggg
             Bactrian camel  gaaggacactgaagaacagactcttag-----a-ga----g-----tatgacagctgagttctgaatggg
                    Dolphin  taagggcactaaagaacagactcttag-----a-ga----g-----tatggtagctgaatcctaaatgcg
               Killer whale  taagggcactaaagaacagactcttag-----a-ga----g-----tatggtagctgaatcctaaatgcg
           Tibetan antelope  taaggacactgaagaacagactcttga-----a-ga----g-----caagacagctgagttctaagtgtg
                        Cow  taa-gacactgaagaacaga--cttga-----a-ga----g----------cagctgagttctaagtgtg
                      Sheep  taaggacactgaagaacagactcttga-----a-ga----g-----caagacagctgagttctaagcgtg
              Domestic goat  taaggacactgaagaacagactcttga-----a-ga----g-----caagacagctgagttctaagcgtg
                      Horse  taagggaattaaagaacagactctt-------a-gagagta-----t--gacaggtgagttctaaatgag
           White rhinoceros  taagagcactaaagaacagactttt-------a-gagagta-----t--gacaggcgagttctaaatgag
                        Cat  taaaggcact--agagcagactctt-------a-ga----a-----t--gacaggtgagttctaaatgag
                        Dog  taaaggcact--ggagcagactcct-------a-ga----a-----t--ga---gtgagttctaaatgaa
                    Ferret   taaaggcact--agagtggattctt-------agga----a-----t--aacaggtgagttctaaaggag
                      Panda  taaaggcact--agagcagactctt-------a-ga----a-----t--gacgggtgagttctaaatgag
             Pacific walrus  taaaggcact--agagtggactctt-------a-ga----a-----t--gacgggtgagttctaaatgag
               Weddell seal  taaaggcact--agagtggactctt-------a-ga----a-----t--gatgggtgagttctaaatgag
           Black flying-fox  taatggcactaaagaacagactcttag-----a-ga----a-----tatgacaggtgagttctaaatgag
                    Megabat  taatggcactaaagaacagactcttag-----a-ga----a-----tatgacaggtgagttctaaatgag
              Big brown bat  taagggcccgaaagaacagac-----------a-ga----g-----tatgacaggtgagttctaaatgag
       David's myotis (bat)  taagggccctaagga----ac-----------a-ga----g-----ta-ggcaggtgagttctaaatgag
                   Microbat  taagggccctaaggaacagac-----------a-ga----g-----tg-ggcaggtgagttctaaatgag
                   Hedgehog  taaaggcactaaagaactgatggtt-------g-ag----a--gtgcttaagagatgagttcgaaataag
                      Shrew  aaaaggcactaacgagcgggttctg-------a-ag----c--gtgtacgagggacaggctctaaggaag
            Star-nosed mole  taagctcac--aaggacagactcag-------a-ga----t-----tagaagaggcaagatctaaatgag
                   Elephant  caaaaaccctaacgaacagatgtttagc----a-ga----g-----tatgagggataagttctaaatgag
        Cape elephant shrew  agaaaaccctaaagaaccaactt---------a-ga----g-----tatgaagg-----------atgag
                    Manatee  aaaaaaccctgaagaacagactctta------a-ga----g-----tatgagggataagttctaaatgag
           Cape golden mole  aaaaaacccctaaagacagactgtt-------a-aa----g-----taggaggga-----------tgag
                     Tenrec  agaaaacccctaaa-acacacttct-------t-ga----g-----tctgagggaggagttctaagtgag
                   Aardvark  aaaaaatccaaaggaccagactctta------a-ga----g-----tatgagggatgagttctaaatgag
                  Armadillo  taaggacactaaagaacagactcttagc----a-ga----g-----tatgagaagtgaattctaagtgaa
                    Opossum  -aagaagacccggcggtggtgg----------a-gg----gaagtgcggggctggaaagccctggatggg
            Tasmanian devil  -gagaaggcgggg--atggggc----------a-ag----g--------ggatgggaggccgagaac-gg
                    Wallaby  -aagaacactgggcagtggtgt----------a-ag----gaagagagcagttggaaagccgtggat-gg
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
                   Platypus  ======================================================================
        Medium ground finch  ======================================================================
     White-throated sparrow  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                     Parrot  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================
         American alligator  ======================================================================

                      Human  ----aacagatgaag-aaaggattggatccaccagcttctctg------------------ccagttgtg
                      Chimp  ----aacagatgaag-aaaggattggatccaccagcttctctg------------------ccagttgtg
                    Gorilla  ----aacagatgaag-agagaattggatccaccagcttctctg------------------ccagttgtg
                  Orangutan  ----aacagatgaag-aaaggattggatccaccagcttctctg------------------ccagttgtg
                     Gibbon  ----aacagatgaag-aaaggattggatccaccagcttctctg------------------ctagttgtg
                     Rhesus  ----aacagatgaag-aaaggattggatccaccagcttctctg------------------ccagttgtg
        Crab-eating macaque  ----aacagatgaag-aaaggattggatccaccagcttctctg------------------ccagttgtg
                     Baboon  ----aacagatgaag-aaaggattggatccaccagcttctctg------------------ccagttgtg
               Green monkey  ----aacagatgaag-aaaggattggatccaccaggttctctg------------------ccagttgtg
                   Marmoset  ----aacagatgaag-aaaggattggatccaccagcttctctg------------------tgagttgtg
            Squirrel monkey  ----aacagatgaag-aaaggattggatccaccagcttctctg------------------ccagttgtg
                   Bushbaby  ----gacctatgaagcaagggacagaattcaccagcttctctg------------------ctagttgtg
         Chinese tree shrew  ----gacgggtagag-caggggcccgcttcaccag---ccctg------------------cc-gctgtg
                   Squirrel  gacagat----aaagcaagggactgcattcaccaacttctctg------------------caagttgtg
     Lesser Egyptian jerboa  ----gat----gaagtgagggacctcattcaccaacttctttg------------------ccaggtgtg
               Prairie vole  ----aat----aaggtgggggactgcattcaccaacttctctg------------------ccaggtgtg
            Chinese hamster  ----gat----aaggtaagggactgcattcaccaacttgtctg------------------ccaggtgtg
             Golden hamster  ----gat----aagatgagggactg----caccaa---------------------------caggtgtg
                      Mouse  ----ggt----aagctgagggactgtgttcaccagcgtctctg------------------ccaggtgtg
                        Rat  ----gat----aagcagagggactgcattcaccagcctctctg------------------ccaggtgtg
             Naked mole-rat  ----aacaaataaggtgagagactgcattcacca------tta------------------tcatttgtg
                 Guinea pig  ----gac----aaggtgagggattgcactcaacagcctc--tg------------------ccatttgta
                 Chinchilla  ----gacaaataaggtgaaagactgcattcagcagcctctttg------------------ccattcgta
           Brush-tailed rat  ----gacagataaggt--cacactgctttcaccagcctttttg------------------ccatttgta
                     Rabbit  ----gacagataaagtgaggggctgaatccttcagcatctctg------------------atagttgtg
                       Pika  ----gaccagtacaggga-gggctaaatgcgtccgctttgctg------------------gtatttgtg
                        Pig  ----gacagatcaagcaagggactgaattcaccagcttctctg------------------ccagttgtg
                     Alpaca  ----gacagatcgagcaagggactgaattcaccagcttccctg------------------ccagttgtg
             Bactrian camel  ----gacagatcgagcaagggactgaattcaccagcttccctg------------------ccagttgtg
                    Dolphin  ----gacctatcaagcaagggactgaagtcaccagcttctttg------------------ccagttgtg
               Killer whale  ----gacctatcaagcaagggactgaattcaccagcttctttg------------------ccagttgtg
           Tibetan antelope  ----gacagatcaagcaaggggctcagttcaccagcttctctg------------------ccaggtgtg
                        Cow  ----gacagatcaagcaaggcactcagttcaccagattctctg------------------ccaggtgtg
                      Sheep  ----gacagatcgagcaaggggctcagttcaccagcttctctg------------------ccaggtgtg
              Domestic goat  ----gacagatcaagcaaggggctcagttcaccagcttctctg------------------ccaggtgtg
                      Horse  ----gacagatcaagcaaggtactgaattcaccaacttctctg------------------tccgttgcg
           White rhinoceros  ----gacagataaagcaagggactgaatttaccaacttctctg------------------ccagttgtg
                        Cat  ----cgcagatcaaacaagggactcaattcatcaacttcgctg------------------ccagttgtg
                        Dog  ----cacagaccaaatgagggactggattcatcaatatctctg------------------ccagttgtg
                    Ferret   ----cacagaccaaatgagggcctggattcatcagcatctctg------------------ccagttgtg
                      Panda  ----tacagaccaaacgagggcctggattcatcaacatctctg------------------ccagttgtg
             Pacific walrus  ----cacagtccaaatgagggcctgcattcatcaacatctttg------------------ccggttgtg
               Weddell seal  ----cacagtccaaatgagggcctggattcatcaacatctctg------------------ccagttgtg
           Black flying-fox  -------agatcaagcaggggaatgaattcacaaacttctctg------------------ccat-----
                    Megabat  -------agatcaagcaggggaatgaattcacaaacttctctg------------------ctat-----
              Big brown bat  ----gacagatcaagcaaggcaatgaattcacaaacttcgctg------------------ccagttgtg
       David's myotis (bat)  ----gacagatcaagcaaggcaatgaattcacaaacttctctg------------------ccagttgtg
                   Microbat  ----gacagatcaagcaaggcaatgaattcacaaacttctctg------------------ccagttgtg
                   Hedgehog  --------gacaaagcaagggagtgaatccaact------------------------------------
                      Shrew  ----aacgaacaaagccagggactgacctcaccggcttctctg------------------ccacttttg
            Star-nosed mole  ----aacagataaagcaaggggctggattcacctacttctctg------------------ccacttgtg
                   Elephant  ----gacagataaagcaagagactgaatttaccaacttttccg------------------ccacttgtg
        Cape elephant shrew  ----gacaaagaaagtgagagactgaattcaccaatttcccct------------------ctggt--ta
                    Manatee  ----gacagataaagcaagagactgaatttaccaacttctctg------------------ccagatgtg
           Cape golden mole  ----gccaaat--agcaagagtctgaatctacccctatctctg------------------ccag-----
                     Tenrec  ----gacagat----caagtcgggggactctttactgcctctg------------------cccgttatg
                   Aardvark  ----gacagat-aagtaagagactgaattccctagcttctcca------------------ccaca----
                  Armadillo  ----gacagataaagcaagggactgaatttacccatttctcag------------------ccagttgtg
                    Opossum  ----cacaa----agcatgggaccacatccactgactcctatg---------------------------
            Tasmanian devil  ----cacag----agcacgaggctgaatccactgatgtctgagatcctgtggtcttagacatcactggtg
                    Wallaby  ----tacag---aagcatgagaccaaatccactgacttccatgatcatgttgac--agacatcactgttg
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
                   Platypus  ======================================================================
        Medium ground finch  ======================================================================
     White-throated sparrow  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                     Parrot  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================
         American alligator  ======================================================================

                      Human  at-tttgatacaagt--tgtgt-tgctttgagctccta--gcagag--ag
                      Chimp  at-tttgatacaagt--tgtgt-tgctttgagctccta--gcagag--ag
                    Gorilla  at-tttgatacaagt--tgtgt-tgctttgagctccta--gcagag--ag
                  Orangutan  at-tttgatacaagt--tgtgt-tgctttgagctccta--gcagag--ag
                     Gibbon  at-tttgatacaagt--tgtgt-tgctttgagctccta--gcagag--ag
                     Rhesus  at-tttgatacaagt--tgtgt-tgctttgagctccta--gcagag--ag
        Crab-eating macaque  at-tttgatacaagt--tgtgt-tgctttgagctccta--gcagag--ag
                     Baboon  at-tttgatacaagt--tgtgt-tgctttgagctccta--gcagag--ag
               Green monkey  at-tttgatacaagt--tgtgt-tgctttgagctccta--gcagag--ag
                   Marmoset  at-tttgatacaagt--tatgt-tgctttgacctccta--gtagag--aa
            Squirrel monkey  at-tttgatacaagt--tgtgt-tgctttgagctccca--gtagag--ag
                   Bushbaby  ac-tttgacacaagt--tatat-tggtctgtgctccta--gcagag--ag
         Chinese tree shrew  ac--ctggcacaagc--tgtgc-tcccttgagctccta--gcatag--cg
                   Squirrel  at-tttgaca---gt--tatgt-tgcattgagcttcta--gcagag--aa
     Lesser Egyptian jerboa  ac---tgacac-agt--tgtat-cacattttgctccta--gcagag--ag
               Prairie vole  ac-tttgacac-cat--tatt--tgcacagagttcgtt--acagag--ag
            Chinese hamster  ac-tttgacac-act--tgtttttgcacagagctcgtg--acagaa--aa
             Golden hamster  gc-tctgacac-gct--tgtttctgcacagagctcata--ac------aa
                      Mouse  ac-tttgacat-ggt--ccttt-tgcgtggagcgtata--gcagagaaaa
                        Rat  ac-tttgacat-ggt--tattt-tgcatggagcacata--gcagagagga
             Naked mole-rat  cc-tttgaca---gt--ta---------------------ccagag--aa
                 Guinea pig  tc---tgaca---gt--tacat-t-tattcaccccctc--ctggag--aa
                 Chinchilla  tg---tgaca---gt--tctgt-tgcattgagccccta--ccagag--aa
           Brush-tailed rat  tgctttgaca---gt--tacat-tgcagtacgcccctg--ccagag--aa
                     Rabbit  ac-tctgagac--tg--tgtgt-tgctttgagccccta--gcagtg--ag
                       Pika  ac-tctgacac------agtgt-tgctctgtgctccta--gcagtg--ag
                        Pig  ac-tttgacataaat--tgtgc-tcctttgagctcctg--gcagag--ag
                     Alpaca  ac-ttggacacaagt--tgtgt-cgctttgagctccta--gcagag--ag
             Bactrian camel  ac-ttggacacaagt--tgtgt-cgctttgagctccta--gcagag--ag
                    Dolphin  ac-tttgatacaagt--tgtgt-tgcacagagctccta--gcagag--ag
               Killer whale  ac-tttgatacaagt--tgtgt-tgcacagagctccta--gcagag--ag
           Tibetan antelope  ac-ttggacacaagc--tgtgc-cactcagagctccta--gcagag--ag
                        Cow  ac-tttgacacaagc--tgtgt-cactcagagctccta--gcagag--ag
                      Sheep  ac-ttggacacaagc--tgtgt-cactcagagctccta--gcagag--ag
              Domestic goat  ac-ttggacacaagc--tgtgt-cactcagagctccta--gcagag--ag
                      Horse  ac-tttgacacaagt--tgtat-tgctttgagctcctt--gcaggg--ag
           White rhinoceros  ac-tttgacacaagt--tgtgt-tgctttgagctcctt--gcagag--ag
                        Cat  ac-tttgacacaagt--tgtgt-tgctttgagcttcta--gca--g--ag
                        Dog  a------------------------ctttgagcttcta--gca--g--ag
                    Ferret   a------------------------ctttgagctttta--gca--g--ag
                      Panda  a------------------------ctttgagcttcta--tca--g--ag
             Pacific walrus  a------------------------ctttgagcttcta--gca--g--ag
               Weddell seal  a------------------------ctttgagcttcta--gca--g--ag
           Black flying-fox  --------------t--tgtgt-tgctttgatctcctt--gcagag--gg
                    Megabat  --------------t--tgtgt-tgctttgatctcctt--gcagag--gg
              Big brown bat  ac-attgacacaaat--tgtgt-tgctttgatctgctt--gcagag--ag
       David's myotis (bat)  ac-attgacgcaaat--tgtgt-tgctctgatctgctt--gcagag--ag
                   Microbat  ac-attgacacaaat--tgtgt-tgctttgatctgctt--gcagag--ag
                   Hedgehog  -----------------tctgt-gactttgaactcaca--gcagag--ag
                      Shrew  ac-tctgacacaagctgtgtgt-ggcttggggcttctctagcagag--gg
            Star-nosed mole  ac-tttgacacaagt--tgtgt-tgctttgaactcctc--gcagag--ag
                   Elephant  ac-tttcgtacaagc--tgtgt-tgcactgagttccta--gtggag--aa
        Cape elephant shrew  ac-ttcggcacgagt--tgtga-tggtctg-------a--gcaaag--ag
                    Manatee  ac-tttggcacaagc--tgtgt-tg--ctgagctttta--gcggac--tt
           Cape golden mole  ---tttggcctgagc--tgtgt-tgctttggg---cta--gcaaag--ag
                     Tenrec  ac-tttgccatgagc--tgggt-tgcactgagctcctg--gcagag--ag
                   Aardvark  -----gtgcacgagc--tgggt-tgctctgagctgcta--gcagag--ag
                  Armadillo  ac-t-tggca-gacc--tgtat-tgctttgagctcctt--gcagag--ag
                    Opossum  ------------------------gc-ttgagcggctg--acgaa-----
            Tasmanian devil  ac---ttactccagc--tg-tg-tgc-tcggtctgctg--gcaaac--aa
                    Wallaby  ac-ttttactcaagc--cgttt-tgc-ttgaaaggctg--ataaag--aa
        Princess of Burundi  ==================================================
               Nile tilapia  ==================================================
                  Tetraodon  ==================================================
                Zebra mbuna  ==================================================
                  Zebrafish  ==================================================
                 Coelacanth  ==================================================
                Spotted gar  ==================================================
        Pundamilia nyererei  ==================================================
      Burton's mouthbreeder  ==================================================
            Green seaturtle  ==================================================
        Collared flycatcher  ==================================================
              X. tropicalis  ==================================================
                 Budgerigar  ==================================================
              Scarlet macaw  ==================================================
                   Platypus  ==================================================
        Medium ground finch  ==================================================
     White-throated sparrow  ==================================================
           Peregrine falcon  ==================================================
               Saker falcon  ==================================================
                     Turkey  ==================================================
                    Chicken  ==================================================
                     Lizard  ==================================================
                Zebra finch  ==================================================
             Painted turtle  ==================================================
         Tibetan ground jay  ==================================================
                     Parrot  ==================================================
                Rock pigeon  ==================================================
               Mallard duck  ==================================================
         American alligator  ==================================================

Alignment block 13 of 1514 in window, 98248495 - 98248556, 62 bps 
B D                   Human  ctaac----ac-tacct--gctg--------tgta-ttttggtcc-tctgtcctatactcctccaagaca
B D                   Chimp  ctaac----ac-tacct--gctg--------tgta-ttttggtcc-tctgtcctatactcctccaagaca
B D                 Gorilla  ctaac----ac-tacct--gctg--------tgta-ttttggtcc-tctgtcctatactcctccaagaca
B D               Orangutan  ctaac----ac-tacct--gctg--------tgta-ttttggtcc-tctgtcctatactcctccaagaca
B D                  Gibbon  ctaac----ac-tacct--gctg--------tgta-ttttggtcc-tctgtcctatactcctccaagaca
B D                  Rhesus  ctgac----ac-tacct--gctg--------tgta-ttttggtac-tctgtcctatactcctccaagaca
B D     Crab-eating macaque  ctgac----ac-tacct--gctg--------tgta-ttttggtac-tctgtcctatactcctccaagaca
B D                  Baboon  ctaac----ac-tacct--gctg--------tgtg-ttttggtac-tctgtcctatactcctccaagaca
B D            Green monkey  ctaac----ac-tacct--gctg--------tgta-ttttggtac-tctgtcctatactcctccaagaca
B D                Marmoset  ctaac----ac-cacca--gctg--------tgta-ttttggtcc-tctgtcctatactcctccaagaca
B D         Squirrel monkey  ctaac----ac-cacca--gcta--------tgta-ttttggtcc-tctgttctatactcctccaagaca
B D                Bushbaby  ctaac----cc-cacct--gcta--------tgta-ttttggtcc-tctgaattcttctcctctaagaca
         Chinese tree shrew  tgagc----cc-cacct--gctg--------tata-ttttggtcc-tctgacctctactcc---aagaca
B D                Squirrel  ctaat----cc-cactt--cttg--------cata-ttttggtcc-tctgtcttctgctctttgaggaca
     Lesser Egyptian jerboa  ccaac----tc-cactt--ct-g--------tgta-ctttggtca-tctgtcttctgttcctccaagaca
               Prairie vole  ctgac----ac-cactt--cttg--------tgtt-ctttggtcc-tctgtcctc-gctcctccaggaca
B D         Chinese hamster  ctgac----tc-cactt--ctaa--------tgtt-ctttggtct-tctgtcttctgttcctccaagaca
             Golden hamster  ctgac----tc-cactt--ct-t--------tgtt-ctttggtcc-tctgtcctttgctcctccaagaca
B D                   Mouse  c-gactccatc-cacag--cttg--------tgtt-ctcgggtcg-tctgtcctttggtcctccaagaca
B D                     Rat  ctgactccatc-cactt--cttg--------tgtt-ctctgctcc-tctgtcctgtgttcctccaagaca
B D          Naked mole-rat  ctagc----cc-cactt--cctt--------tatg-ttttggt------------------------aca
B D              Guinea pig  ctagc----cc-cactt--tctg--------tata-tttaggt------------------------aca
                 Chinchilla  atagt----tc-cactt--cctg--------tata-tttaggt------------------------aca
           Brush-tailed rat  ctggt----cc-cactt--cttg--------tgta-tttaggt------------------------aca
B D                  Rabbit  ctgac----ct-catct--cctg-------------tgtgagtcc-tctgtcctc---tactccaagaca
B D                    Pika  ataac----cc-cgttt--cctggtctcttgtgta-ttcgagtcc-tctcttctcaaatcctccaagtca
B D                     Pig  ctgac----ca-ctcct--------------tgta-ttttggtcc-------------tcc---aagaca
B D                  Alpaca  ctga--------cccct--cctg--------tgta-ttttggtcc-------------tcctccaagaca
             Bactrian camel  ctga--------cccct--cctg--------tgta-ttttggtcc-------------tcctccaagaca
B D                 Dolphin  ctgac----ct-ctcct--cctg--------tgta-tttcggtcc-------------tcctccaagaca
               Killer whale  ctgac----ct-ctcct--cctg--------tgta-tttcggtcc-------------tcctccaagaca
           Tibetan antelope  ctgac----tc-ctcct--cctg--------tgta-ttttggccc-------------tcctcggagaca
B D                     Cow  ctgac----tc-ctcct--cc----------tgta-ttttggccc-------------t-ctctgagaca
B D                   Sheep  ctgac----tc-ctcct--cctg--------tgta-tttcggccc-------------tcctctgagaca
              Domestic goat  ctga--------ctcct--cctg--------tgta-tttcggccc-------------tcctgtgagaca
B D                   Horse  ctaac----cc-caccg--cctg--------tgta-ttttggtct-tttgtcttctactcctccaagaca
B D        White rhinoceros  ctaac----cc-caccg--cctg--------tata-ttttggtcc-tttgtcttctactccttcaagaca
B D                     Cat  ctaat----cc-tgcct--cctg--------tgta-tttctgtcc-ttcgtcctcta---ctccaagact
B D                     Dog  ttaat----cc-cacct--cctg--------tatattttttgtccttttgtcctctactcctcccagaca
B D                 Ferret   ttaat----cc-tatct--tcca--------tgta-tctttatccttttgtcccctactcctccaagaca
B D                   Panda  ttaat----cc-tatct--cctg--------tgta-tttctgtccttttgtcctcta---ccccaagaca
             Pacific walrus  ttaat----cc-tatct--cctg--------tgta-tgtttgtccttttgtcctctactcctccaagaca
               Weddell seal  ttaat----cc-tatct--cctg--------tgta-tgtttgtccttttgtcctctactcctccaagaca
           Black flying-fox  ctact----cc-cacct--cctg--------tgta-ttttggtcc-tctgtcttcta---ctccaagaca
B D                 Megabat  ctact----cc-cacct--cttg--------tgta-ttttggtcc-tctgtcttcta---ctccaagaca
              Big brown bat  ctaac----cc-cacct--cctg--------tgta-tt----gcc-cctgtcttctactcctccaagacg
       David's myotis (bat)  ctatc----cc-cacct--cctg--------tgta-tt----gcc-cctgtcttcgtctcctccaagaca
B D                Microbat  ctaac----cc-cacct--cctg--------tgta-tt----gcc-cctgtcttctactcctccaagaca
B D                Hedgehog  cta------------cc--cctg--------taca-ttttggtcc-tctgccc--------tctaagaca
B D                   Shrew  ctaac----cc-cacct--cctg--------tgtg-tgttggtct-tctgtcttcctc---tccgtgaca
            Star-nosed mole  ctaac----cc-cacct--cctg--------tctc-ttttggtcc-tctgtcctctgctcttctgagaca
B D                Elephant  ctggc----ccccacct--cctg--------tgta-ttttggtcc-tttgtcttctctacctccaggaca
        Cape elephant shrew  ctggt----cctca-----actg--------tgta-ttttggtcg-tctgtcttgtt--cttccaggcca
B D                 Manatee  gtggc----ccccacctcctctg--------tata-ttttggtcc-tttgttgtcttctcctctaggaca
           Cape golden mole  ctggc----ccccacct--cctg--------tgtg-ttttggtcg-tttgccttctactcctctaggaca
B D                  Tenrec  ctgac----cttcatcc--cctg--------tgta-ttttggtcc-tttgtcttccatgcctctgggaca
                   Aardvark  ccggc----ccccatct--cctgt-------ttta-ttttggtcc-tttgttttcta---ctccgagaca
B D               Armadillo  ctaac----ccccacct--tctg--------tgta-ttttggtcc-tttgtctt------ctccaagaca
B D                 Opossum  -------------------------------gctg-ctattggc--ttcatcccca--gccac-caaaaa
B D         Tasmanian devil  cagtt----ta-ttcca--tcaa--------gctt-c----------tttcccccagtgccac------a
B D                 Wallaby  cagtt----ta-ttcca--tcag--------attt-ctattggc--tttatccccagcgtcactgcaaaa
B D                  Medaka  ctggc----tt-cattt--gctg--------tgtt-ttagcatcc-catcgcctaggcaaccccacaatg
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================
B D               Zebrafish  ======================================================================
B D              Coelacanth  ======================================================================
               Spotted gar  ======================================================================
       Pundamilia nyererei  ======================================================================
     Burton's mouthbreeder  ======================================================================
  D         Green seaturtle  ======================================================================
  D     Collared flycatcher  ======================================================================
B D           X. tropicalis  ======================================================================
B D              Budgerigar  ======================================================================
  D           Scarlet macaw  ======================================================================
B D                Platypus  ======================================================================
B D     Medium ground finch  ======================================================================
  D  White-throated sparrow  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
B D                  Turkey  ======================================================================
B D                 Chicken  ======================================================================
B D                  Lizard  ======================================================================
B D             Zebra finch  ======================================================================
  D          Painted turtle  ======================================================================
        Tibetan ground jay  ======================================================================
  D                  Parrot  ======================================================================
  D             Rock pigeon  ======================================================================
  D            Mallard duck  ======================================================================
B D      American alligator  ======================================================================

                      Human  tttg---------ca---aag
                      Chimp  tttg---------ca---aag
                    Gorilla  tttg---------ca---aag
                  Orangutan  tttg---------ca---aag
                     Gibbon  tttg---------ca---aag
                     Rhesus  tttg---------ca---aag
        Crab-eating macaque  tttg---------ca---aag
                     Baboon  tttg---------ca---aag
               Green monkey  tttg---------ca---aag
                   Marmoset  tctg---------ca---aag
            Squirrel monkey  tctg---------ca---aag
                   Bushbaby  tttg---------ca---agg
         Chinese tree shrew  tctg---------ca---aag
                   Squirrel  ttta---------ca---aag
     Lesser Egyptian jerboa  tttg---------ca---aag
               Prairie vole  tctaagtggtcctca---gag
            Chinese hamster  ttta---------ca---aag
             Golden hamster  tttg---------ca---aag
                      Mouse  tttg---------ca---aag
                        Rat  cttg---------tg---aag
             Naked mole-rat  ttta---------ca---aag
                 Guinea pig  tttt---------ca---tag
                 Chinchilla  tttg---------ca---aag
           Brush-tailed rat  tttg---------ta---aag
                     Rabbit  ttcg---------ca---aag
                       Pika  ttca---------caaggaag
                        Pig  tctg---------ca---aag
                     Alpaca  ttcg---------ca---aag
             Bactrian camel  ttcg---------ca---aag
                    Dolphin  tttg---------ca---aag
               Killer whale  tttg---------ca---aag
           Tibetan antelope  tctg---------ca---aag
                        Cow  tctg---------ca---aag
                      Sheep  tctg---------ca---aag
              Domestic goat  tctg---------ca---aag
                      Horse  tttg---------ca---aag
           White rhinoceros  tttg---------ca---aag
                        Cat  tttg---------ca---aag
                        Dog  tttg---------ca---aag
                    Ferret   tttg---------ca---aag
                      Panda  tttg---------ca---aag
             Pacific walrus  tttg---------ca---aag
               Weddell seal  tttg---------ca---aag
           Black flying-fox  tttg---------ca---aag
                    Megabat  tttg---------ca---aag
              Big brown bat  tgtg---------ca---aag
       David's myotis (bat)  tgtg---------ca---aag
                   Microbat  tgtg---------ca---aag
                   Hedgehog  tttg---------ca---aag
                      Shrew  ctcg---------ca---aag
            Star-nosed mole  tcgg---------ca---aag
                   Elephant  tttg---------ca---aag
        Cape elephant shrew  tctg---------ca---aag
                    Manatee  tttg---------ca---aag
           Cape golden mole  ttta---------ca---aag
                     Tenrec  tgta---------ca---aag
                   Aardvark  ttgg---------ca---cag
                  Armadillo  tttg---------ca---aaa
                    Opossum  taca---------ta---aag
            Tasmanian devil  taca---------tg---aag
                    Wallaby  tata---------ta---aag
                     Medaka  gttg---------at---cag
        Princess of Burundi  =====================
               Nile tilapia  =====================
                  Tetraodon  =====================
                Zebra mbuna  =====================
                  Zebrafish  =====================
                 Coelacanth  =====================
                Spotted gar  =====================
        Pundamilia nyererei  =====================
      Burton's mouthbreeder  =====================
            Green seaturtle  =====================
        Collared flycatcher  =====================
              X. tropicalis  =====================
                 Budgerigar  =====================
              Scarlet macaw  =====================
                   Platypus  =====================
        Medium ground finch  =====================
     White-throated sparrow  =====================
           Peregrine falcon  =====================
               Saker falcon  =====================
                     Turkey  =====================
                    Chicken  =====================
                     Lizard  =====================
                Zebra finch  =====================
             Painted turtle  =====================
         Tibetan ground jay  =====================
                     Parrot  =====================
                Rock pigeon  =====================
               Mallard duck  =====================
         American alligator  =====================

Alignment block 14 of 1514 in window, 98248557 - 98248638, 82 bps 
B D                   Human  c-accactt------agatgggg------g----actggg-cca----------------tagt-ccatc
B D                   Chimp  c-accactt------agatgggg------g----actggg-cca----------------tagt-ccatc
B D                 Gorilla  c-accactt------agatgggg------g----actggg-cca----------------tagt-ccatc
B D               Orangutan  c-accactt------agatgggg------g----actggg-cca----------------tagt-ccatc
B D                  Gibbon  c-accactt------agatgggg------g----actggg-ccg----------------tagt-ccatc
B D                  Rhesus  c-accacta------agatgggg------g----actgga-cca----------------tagt-ccatc
B D     Crab-eating macaque  c-accacta------agatgggg------g----actgga-cca----------------tagt-ccatc
B D                  Baboon  c-accactt------agatgggg------g----actgga-cca----------------tagt-ccatc
B D            Green monkey  c-accactt------agatgggg------g----actgga-cca----------------tagt-ccatc
B D                Marmoset  c-accactt------agatgggg------------------cca----------------tagt-ctatc
B D         Squirrel monkey  c-accactt------agatgggg------------------cca----------------tagt-ctgtc
B D                Bushbaby  c-atcactt------agatggga------a----actggg-cca----------------aagt-tcatc
         Chinese tree shrew  c-acctctt------agatgggg------g----at----------------------------------
B D                Squirrel  c-actgttt------atgcggag------g----tctggg-cca----------------tagt-tcacc
     Lesser Egyptian jerboa  c-accagct------agatgtgg------g----cctggg-cca----------------cagt-ttatc
               Prairie vole  c-accactc------agatgg-g------g----cgttgg-cca----------------cagt-tcatc
B D         Chinese hamster  c-accactt------agatggag------g----tcttgg-cca----------------cagt-tcgtc
             Golden hamster  c-accactt------agatggag------g----tcttgg-cca----------------cagt-ttgtc
B D                   Mouse  c-accactt------agaggg-g------g----ccttgg-tca----------------cagt-tcatc
B D                     Rat  c-accactt------agagag-g------gaggaccttgg-tca----------------cagt-tcatc
B D          Naked mole-rat  t-accactt------agctgggg------g----actgtgccca----------------cagt-aaatc
B D              Guinea pig  t-accgctt------agatcggg------g----actgtgccca----------------tagt-aaacc
                 Chinchilla  t-accactt------agatgggg------g----actgtaccca----------------tagt-aaatc
           Brush-tailed rat  c-cccactt------aggtgggg------g----actgtg-cca----------------tagt-aaatc
B D                  Rabbit  c-actgc-t------agatgggg------g----actggt-cc---------------------------
B D                    Pika  c-act---t------agatgggg------c----attggt-cc---------------------------
B D                     Pig  c-accatgt------aaatggg-------a----actggg-c--------------------------tt
B D                  Alpaca  c-accattt------agatggga------a----actggg-cca----------------tagt-ccatc
             Bactrian camel  c-accattt------agatggga------a----actggg-ccg----------------tagt-ccatc
B D                 Dolphin  c-accattt------agatgggg------g----actggg-cca----------------cagt-ccatt
               Killer whale  c-accattt------agatgggg------g----actggg-cca----------------cagt-ccatt
           Tibetan antelope  c-accattt------agatgggg------a----gccagg-cca----------------cagt-ccatt
B D                     Cow  c-accattt------agatgggg------a----gccagg-cca----------------tagt-ccatt
B D                   Sheep  c-accattt------agatgggg------a----gccagg-cca----------------cagt-ccatt
              Domestic goat  c-accattt------agatgggg------a----gccagg-cca----------------cagt-ccatt
B D                   Horse  c-accattt------aaatgggg------g----actggg-cca----------------cagt-ccatc
B D        White rhinoceros  c-accgttt------agatgggg------g----actggg-cca----------------tagt-ccatc
B D                     Cat  caaccgttt------aaatgcgg------g----gttggg-tca----------------cagc-ccatc
B D                     Dog  c-accattt------aaatgggg------g----gctagg-caa----------------cagtcccatc
B D                 Ferret   c-accattc------aaatgggg------g----actgag-cca----------------tagt-ccatc
B D                   Panda  c-accattt------aagtgggg------g-----ctggg-cca----------------tagt-ccatc
             Pacific walrus  c-accattt------aaatgggg------g----actggg-cca----------------tagt-ccatc
               Weddell seal  c-accattt------aaatgggg------g----actggg-cca----------------tagt-ccatc
           Black flying-fox  c-accattt------agatgggg------g----actggg-cca----------------tagt-ccatc
B D                 Megabat  c-accattt------agatgggg------g----actggg-cca----------------tagt-ccatc
              Big brown bat  c-actatttt-----aggtgggg------g----actgga-cca----------------tagt-ccatc
       David's myotis (bat)  c-actattta-----aggtgggg------g----actgga-cca----------------tagt-ccatc
B D                Microbat  c-actattta-----aggtgggg------g----actgga-cca----------------tagt-ccatc
B D                Hedgehog  c-gccactcggatgaggatgtgg------ggaaggttggg-cca----------------tagt-ctata
B D                   Shrew  c-accatttagct----atgggg------g---cactgga-cca----------------gcgt-ccagc
            Star-nosed mole  c-accattcattt--agatgggg------g----attagg-tca----------------tcgt-ccatt
B D                Elephant  c-accattt------aggtgggg------g----cctggt-cca----------------cagt-ccatc
        Cape elephant shrew  c-gccatta------agatgaat------a----cttggt-cca----------------caat-ccatc
B D                 Manatee  a-accattt------agatgggg------g----cctggg-cca----------------tagt-ccatc
           Cape golden mole  t-acc-------------------------------tggg-tca----------------tagt-ccatc
B D                  Tenrec  c-acca-tg------gggggagg------g----atggga-tcaggggagacccgagcgttagt-ccatc
                   Aardvark  c-accactt------agatggggga----g----cctgtg-cta----------------cagt-ccatc
B D               Armadillo  c-acccttt------agatgggg------g----gctggg-cca----------------tagt-ccatc
B D                 Opossum  c-accatcg------agtcaggg------c----tcccgg-ctg----------------tgcc------
B D         Tasmanian devil  c-accatag------aattgggg------c----ttct-g-cta----------------tccc------
B D                 Wallaby  c-accatag------agttgggg------t----gcctgg-caa----------------tccc------
  D                  Parrot  c-actgcct------ggctgggacacatca----cctaga-cca----------------cggt-tgatc
B D                  Medaka  c-tccagct------tgatgggt------t----caaagg-tca---------------------gcaaa
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================
B D               Zebrafish  ======================================================================
B D              Coelacanth  ======================================================================
               Spotted gar  ======================================================================
       Pundamilia nyererei  ======================================================================
     Burton's mouthbreeder  ======================================================================
  D         Green seaturtle  ======================================================================
  D     Collared flycatcher  ======================================================================
B D           X. tropicalis  ======================================================================
B D              Budgerigar  ======================================================================
  D           Scarlet macaw  ======================================================================
B D                Platypus  ======================================================================
B D     Medium ground finch  ======================================================================
  D  White-throated sparrow  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
B D                  Turkey  ======================================================================
B D                 Chicken  ======================================================================
B D                  Lizard  ======================================================================
B D             Zebra finch  ======================================================================
  D          Painted turtle  ======================================================================
        Tibetan ground jay  ======================================================================
  D             Rock pigeon  ======================================================================
  D            Mallard duck  ======================================================================
B D      American alligator  ======================================================================

                      Human  c---ctaagaa---actgagag----------------------------------ctcctgaat-cccg
                      Chimp  c---ctaagaa---actgagag----------------------------------ctcctgaat-cccg
                    Gorilla  c---ctaagaa---actgagag----------------------------------ctcctgaat-cccg
                  Orangutan  c---ctaagaa---actgagag----------------------------------ctcctgaac-cccg
                     Gibbon  c---ctaagaa---actgagag----------------------------------ctcctgaa---ccg
                     Rhesus  c---ctaaaga---actgaaag----------------------------------ctcctgaac-cccg
        Crab-eating macaque  c---ctaaaga---actgaaag----------------------------------ctcctgaac-cccg
                     Baboon  c---ctaaaga---actgaaag----------------------------------ctcctgaac-cccg
               Green monkey  c---ctaaaga---actgaaag----------------------------------ctcctgaac-cccg
                   Marmoset  c---ctaagga---actgagag----------------------------------ctc--------cag
            Squirrel monkey  c---ctaagga---actgagag----------------------------------ctc--------cag
                   Bushbaby  c---ctacgga---aatgagag----------------------------------ctcctaaac-ccgg
         Chinese tree shrew  ---------ga---ac--agag----------------------------------cttccgaag-ccag
                   Squirrel  c---ctaagaa---actgagag----------------------------------tttctgaat-ccag
     Lesser Egyptian jerboa  c---ctaagga---actgagggtctgggccacggtttatccctaaggaactgagatctcctgcag-ctgg
               Prairie vole  c---ctacgga---acttagag----------------------------------cttctgaaa-ctga
            Chinese hamster  c---ctaagga---acttagag----------------------------------ctcctgaaa-ctgg
             Golden hamster  c---ctaagga---acttagag----------------------------------ctgctgaac-ctgg
                      Mouse  c---ctgagga---acttagag----------------------------------ctcctgaaa-ctgg
                        Rat  c---ctgagga---acttggag----------------------------------ctcctgaag-ctgg
             Naked mole-rat  c---ctatgga---actgagag----------------------------------ctccagaag-ccag
                 Guinea pig  c---ctatgga---actgagag----------------------------------ctccagaag-ccag
                 Chinchilla  c---ttatgga---actgagag----------------------------------ctccagaag-ccat
           Brush-tailed rat  c---ctatgga---gctgagag----------------------------------ctctggagt-ccag
                     Rabbit  --------tga---atccagaa----------------------------------ctctag--------
                       Pika  --------tga---atccagaa----------------------------------ctctgg--------
                        Pig  c---ct--------cctgg------------------------------------------gaa--gcag
                     Alpaca  c---ctaagga---actgattg----------------------------------ctcctgaa--ccag
             Bactrian camel  c---ctaagga---actgattg----------------------------------ctcctgaa--gcag
                    Dolphin  c---ctaagga---actgatag----------------------------------ctcttgaa--ccat
               Killer whale  c---ctaagga---actgatag----------------------------------ctcttgaa--ccat
           Tibetan antelope  c---ctaagga---actggtac----------------------------------ctgttgaa--ccag
                        Cow  c---ctaagga---actggtac----------------------------------ctcctgaa--ccag
                      Sheep  c---ctaagga---actggtac----------------------------------ctgctgat--ccag
              Domestic goat  c---ctaagga---actggtac----------------------------------ctgctgaa--ccag
                      Horse  c---ctaagga---gctgattg----------------------------------ctcctgaa--ccag
           White rhinoceros  c---ctaagga---actgattg----------------------------------ctcctgaa--ccag
                        Cat  t---ctaagga---actgattg----------------------------------ctcctgag--ccaa
                        Dog  t---cttagga---actgatcg----------------------------------ttcctgaa--ccag
                    Ferret   t---ctaattg---------------------------------------------ctcctgaa--tcag
                      Panda  t---ctaagga---actgattg----------------------------------ctcctgta--gcag
             Pacific walrus  t---ctaagta-----------------------------------------------------------
               Weddell seal  t---ctaagta-----------------------------------------------------------
           Black flying-fox  c---ctaagga---actgattg----------------------------------ctcctgaa--ccag
                    Megabat  c---ctaagga---actgattg----------------------------------ctcctgaa--ccag
              Big brown bat  c---ccgagga---actgattg----------------------------------cttctgac--ccag
       David's myotis (bat)  c---ccaagga---actgattg----------------------------------ctcctgac--ccag
                   Microbat  c---ccaagga---actgattg----------------------------------ctcctgac--ccag
                   Hedgehog  c---ttaagga---gttggttg----------------------------------ctcctgaa--ccag
                      Shrew  c---ctaagga---actgactg----------------------------------ctcctgaa--ctag
            Star-nosed mole  c---ct--------ataaactg----------------------------------ctcctgaa--cccg
                   Elephant  c---ctaagga---actgagag----------------------------------cttctgaag-cagg
        Cape elephant shrew  c---ctaaaga---actgagca----------------------------------cttctggag-tagg
                    Manatee  c---ctaagga---actgagag----------------------------------ctcctgaag-cagg
           Cape golden mole  t---ctaatga---actgagag----------------------------------ctcctgaag-caag
                     Tenrec  c---ctaaaga---gctgagaa----------------------------------ctccggaag-cagg
                   Aardvark  c---ctaaaga---actgagaa----------------------------------ctccagaag-cggg
                  Armadillo  t---gtaagga---accaacag----------------------------------atcctgaag-aagg
                    Opossum  ------gagag---gtcaa-ag----------------------------------ccaacggagccagg
            Tasmanian devil  ------aagaa---ggcaagag----------------------------------cctgaggagccagg
                    Wallaby  ------atgaa---ggca--ag----------------------------------tctgtaaagccggg
                     Parrot  ctggctggggactggcttcatg----------------------------------gtcctggtggggaa
                     Medaka  g---ccaagtc---tctgaggg----------------------------------ttctgatgg-tttg
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
                   Platypus  ======================================================================
        Medium ground finch  ======================================================================
     White-throated sparrow  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================
         American alligator  ======================================================================

                      Human  gat-ctctgtggcaagatt
                      Chimp  gat-ctctgtggcaagatt
                    Gorilla  gat-ctctgtggcaagatt
                  Orangutan  gat-ctctgtggcaagatt
                     Gibbon  gat-ctctgtggcaagatt
                     Rhesus  cat-ctctgtggcaagatt
        Crab-eating macaque  cat-ctctgtggcaagatt
                     Baboon  cgt-ctctgtggcaagatt
               Green monkey  cat-ctctgtggcaagatt
                   Marmoset  gat-ctctgtggtaagatt
            Squirrel monkey  gat-ctctgtggtaaggtt
                   Bushbaby  gaa-ctctgcagcaagatc
         Chinese tree shrew  gcg-ctctgcca-gagctc
                   Squirrel  gaa-ccctgtggcaaattt
     Lesser Egyptian jerboa  gaa-ttttgcaacaagttt
               Prairie vole  gaa-ctgtgcatcacgttt
            Chinese hamster  gaa-ctgtacatgaagttt
             Golden hamster  gaa-ctgtacatcaagctt
                      Mouse  gaa-ctgtgcatcaagttg
                        Rat  gaa-ctgtgcatcaagttg
             Naked mole-rat  gac-atctgcagtgggttt
                 Guinea pig  gaa-ctctgcagtaggttt
                 Chinchilla  gaa-ctctgcagtaggttt
           Brush-tailed rat  gga-ccctgcagtaggttt
                     Rabbit  ------------caagatc
                       Pika  ------------caagatc
                        Pig  gac-ctctggggcaaaatc
                     Alpaca  gag-ctctgaagcaaaatc
             Bactrian camel  gag-ctctgaggc------
                    Dolphin  gaa-ctctggggcaagatc
               Killer whale  gaa-ctctggggcaagatc
           Tibetan antelope  gag-ctcaggggcaagatc
                        Cow  gag-ctcaggggcaagatc
                      Sheep  gag-ctcaggggcaagatc
              Domestic goat  gag-ctcaggggcaagatc
                      Horse  gaa-ctctggggcaagatc
           White rhinoceros  gaa-ctctggggcaagatc
                        Cat  gaa-cactggggcaagatc
                        Dog  gaa-cgttggggcaaaatc
                    Ferret   gaa-ctctggggcaagatc
                      Panda  gaa-ctctggggtaagatc
             Pacific walrus  -------------aagacc
               Weddell seal  -------------aagacc
           Black flying-fox  gaa-ctctggggcaaaatc
                    Megabat  gaa-ctctggggcaaaatc
              Big brown bat  gaa-ctcgggggcaaaatc
       David's myotis (bat)  gaa-ctcagggccaaaatc
                   Microbat  gaa-ctcggggccaaaatc
                   Hedgehog  gaacctctggggcaagatc
                      Shrew  gcg-tgctgggaccagatc
            Star-nosed mole  gga-caccagggcaagata
                   Elephant  gaa-ctctgaagcaaaatc
        Cape elephant shrew  gaa-cttgg--ggaaaatc
                    Manatee  gaa-ctctggggcaaaatc
           Cape golden mole  gaa-cactggggcacaatc
                     Tenrec  aac-tccgaggacac----
                   Aardvark  gaa-ctttggggcaaaatc
                  Armadillo  aaa-ctttggggcaatatc
                    Opossum  ggg-cgctggcacagagtc
            Tasmanian devil  gga-tggtgacacagagtt
                    Wallaby  gga-tgatg-------gct
                     Parrot  gag-cgcagaggaaggagc
                     Medaka  gtt-ccttattgagagatt
        Princess of Burundi  ===================
               Nile tilapia  ===================
                  Tetraodon  ===================
                Zebra mbuna  ===================
                  Zebrafish  ===================
                 Coelacanth  ===================
                Spotted gar  ===================
        Pundamilia nyererei  ===================
      Burton's mouthbreeder  ===================
            Green seaturtle  ===================
        Collared flycatcher  ===================
              X. tropicalis  ===================
                 Budgerigar  ===================
              Scarlet macaw  ===================
                   Platypus  ===================
        Medium ground finch  ===================
     White-throated sparrow  ===================
           Peregrine falcon  ===================
               Saker falcon  ===================
                     Turkey  ===================
                    Chicken  ===================
                     Lizard  ===================
                Zebra finch  ===================
             Painted turtle  ===================
         Tibetan ground jay  ===================
                Rock pigeon  ===================
               Mallard duck  ===================
         American alligator  ===================

Inserts between block 14 and 15 in window
B D                 Medaka 6101bp

Alignment block 15 of 1514 in window, 98248639 - 98248647, 9 bps 
B D                   Human  cagggatga
B D                   Chimp  cagggatga
B D                 Gorilla  cagggatga
B D               Orangutan  cagggatga
B D                  Gibbon  cagggatga
B D                  Rhesus  cagggatga
B D     Crab-eating macaque  cagggatga
B D                  Baboon  cagggatga
B D            Green monkey  cagggatga
B D                Marmoset  cagggttga
B D         Squirrel monkey  cagggttga
B D                Bushbaby  caggaaaga
         Chinese tree shrew  caggacagc
B D                Squirrel  cagtaaaga
     Lesser Egyptian jerboa  caggaagga
               Prairie vole  taaaacaga
B D         Chinese hamster  taagacaga
             Golden hamster  taagacaga
B D                   Mouse  taaagaaga
B D                     Rat  taagaaagg
B D          Naked mole-rat  caggaaaga
B D              Guinea pig  caggagaga
                 Chinchilla  caggaaaga
           Brush-tailed rat  caggaaagg
B D                  Rabbit  caggaaaaa
B D                    Pika  caggaagga
B D                     Pig  cgagaaaga
B D                  Alpaca  caggaaaga
             Bactrian camel  -----aaga
B D                 Dolphin  cgggaagga
               Killer whale  cgggaagga
           Tibetan antelope  ctgggaaga
B D                     Cow  ccgggaaga
B D                   Sheep  ctgggaaga
              Domestic goat  ctgggaaga
B D                   Horse  caggaaaga
B D        White rhinoceros  cagggaaga
B D                     Cat  cgggaaaga
B D                     Dog  caggaagga
B D                 Ferret   cagtaagga
B D                   Panda  cagtaaaga
             Pacific walrus  cagtaaaga
               Weddell seal  cagtaaaga
           Black flying-fox  caggaaaga
B D                 Megabat  caggaaaga
              Big brown bat  caagaaaga
       David's myotis (bat)  caagaaaga
B D                Microbat  caagaaaga
B D                Hedgehog  caagaaaaa
B D                   Shrew  cagagggaa
            Star-nosed mole  caggaaaga
B D                Elephant  caggaaagt
        Cape elephant shrew  tagaaaaga
B D                 Manatee  caggaaaga
           Cape golden mole  caggaaa--
                   Aardvark  caagaaaga
B D               Armadillo  caggaaa--
B D                 Opossum  tggg-----
B D         Tasmanian devil  cagg-----
B D                 Wallaby  ctgt-----
  D                  Parrot  aggggatgg
B D                  Tenrec  ---------
       Princess of Burundi  =========
B D            Nile tilapia  =========
B D               Tetraodon  =========
               Zebra mbuna  =========
B D               Zebrafish  =========
B D              Coelacanth  =========
               Spotted gar  =========
       Pundamilia nyererei  =========
     Burton's mouthbreeder  =========
  D         Green seaturtle  =========
  D     Collared flycatcher  =========
B D           X. tropicalis  =========
B D              Budgerigar  =========
  D           Scarlet macaw  =========
B D                Platypus  =========
B D     Medium ground finch  =========
  D  White-throated sparrow  =========
  D        Peregrine falcon  =========
  D            Saker falcon  =========
B D                  Turkey  =========
B D                 Chicken  =========
B D                  Lizard  =========
B D                  Medaka  =========
B D             Zebra finch  =========
  D          Painted turtle  =========
        Tibetan ground jay  =========
  D             Rock pigeon  =========
  D            Mallard duck  =========
B D      American alligator  =========

Inserts between block 15 and 16 in window
  D                 Parrot 5bp

Alignment block 16 of 1514 in window, 98248648 - 98248720, 73 bps 
B D                   Human  ctgg--------------gtttccttacagaagag----------------ga-gctcagctgagcaaag
B D                   Chimp  ctgg--------------gtttccttatagaagag----------------ga-gctcagctgagcaaag
B D                 Gorilla  ctgg--------------gtttccttatagaagag----------------ga-gctcagctgagcaaag
B D               Orangutan  ctgg--------------gtttccttatagaagag----------------ga-gctcagctgagcaaag
B D                  Gibbon  ctgg--------------gtttccttatagaagag----------------ga-gctcagctgagcaaag
B D                  Rhesus  ctgg--------------gtttccttatagaagag----------------ga-gctcagctgagcaaag
B D     Crab-eating macaque  ctgg--------------gtttccttatagaagag----------------ga-gctcagctgagcaaag
B D                  Baboon  ctgg--------------gtttccttatagaagag----------------ga-gctcagctgagcaaag
B D            Green monkey  ctgg--------------gtttccttatagaagaa----------------ga-gctcagctgagcaaag
B D                Marmoset  ctgg--------------gtgtccttatagaa-------------------ga-gctcagctgtgcaaag
B D         Squirrel monkey  ctgc--------------gtgtccttacagaa-------------------ga-gctcagctgagcaaag
B D                Bushbaby  ttgg--------------ttctccttatggaaga-----------------ga-ggtcagctgagccaag
         Chinese tree shrew  ctgg--------------gtcacctcacggaagga----------------ga-gctcagctagacaaag
B D                Squirrel  ttgg--------------gtctccttatgaagagg----------------a--gcttagatgaccaaag
     Lesser Egyptian jerboa  ttgt--------------gactccttatggaagag----------------gaggcttagctgaccagag
               Prairie vole  ttga--------------gtctccttaaggaagag----------------aaggcttagctggccaaag
B D         Chinese hamster  ttga--------------gtctccttaaggaaaag----------------aaggcttagctggccagag
             Golden hamster  ttgg--------------gtctccttaaggaagag----------------aaggcttagtgggccagag
B D                   Mouse  tcga--------------gtctcctgaaggaagag----------------aaggttgagctggc-----
B D                     Rat  tcga--------------gtctccttaaggaagag----------------aaggtttagctggtcagag
B D          Naked mole-rat  ttaa--------------gtgaccttccagaagag----------------ga-acttagcagaacaaag
B D              Guinea pig  ttag--------------gtggccttatagaagag----------------ga-acttagttgaccaaag
                 Chinchilla  ttag--------------acggccttatagaaaag----------------gc-acttagctgaccaaag
           Brush-tailed rat  ttag--------------gtgatctt------cag----------------gt-gcttaactgactgaag
B D                  Rabbit  ttgg--------------atctccttgtggaagag----------------ga-gctcagctgactaaag
B D                    Pika  ttag--------------gt---cttgtggaagag----------------aa-gctcagctgtccaaag
B D                     Pig  ctgg--------------gtctccttatggaagag----------------ga-gctcagccaaacgagg
B D                  Alpaca  ctag--------------gtctccttctggaagag----------------ga-gctcagctaaataaaa
             Bactrian camel  ctag--------------gtctccttatggaagag----------------ga-gctcagctaaataaaa
B D                 Dolphin  ctgg--------------gtctcc-tatggaagag----------------ga-gctcagctgaacaaag
               Killer whale  ctgg--------------gtctcc-tatggaagag----------------ga-gctcagctgaacaaag
           Tibetan antelope  ccag--------------gtctccttagaggagag----------------ga-gctcagctgaacaaag
B D                     Cow  ccag--------------gtctccttagaggagag----------------ga-gctcagctgaacaaag
B D                   Sheep  ccag--------------gtctccttagaggagag----------------ga-gctcagctgaacaaag
              Domestic goat  ccag--------------gtctccttagaggagag----------------ga-gctcagctgaacaaag
B D                   Horse  ctgg--------------gtgtccttatggaagag----------------ga-gctcagctgagcaaag
B D        White rhinoceros  ctga--------------gtctccttatggaagag----------------aa-actcagtttaacaaag
B D                     Cat  tggg--------------gtctccttgtggaagag----------------ca-gctcatctgaacaaag
B D                     Dog  ttgg--------------gtctccttgtggaagag----------------ga-actcagctgaacaaag
B D                 Ferret   ctgg--------------gtctccttgtggaagac----------------ga-gctcagctcaacaaag
B D                   Panda  ctgg--------------gtctccttatggaagat----------------ga-gctcagctgaacaaag
             Pacific walrus  -----------------------cttgtggaagac----------------ga-gctcagctgaacaaag
               Weddell seal  -----------------------cttgtggaagac----------------ga-gctcagctgaacaaag
           Black flying-fox  ttgg--------------gtctccttatggaaggg----------------ga-actcagctgaacaaag
B D                 Megabat  ttgg--------------gtctccttatggaaggg----------------ga-actcagctgaacaaag
              Big brown bat  ttgg--------------gtctccctatgcaagag----------------ga-gcttagctgcacaaag
       David's myotis (bat)  ttgg--------------gtctccttatgcaagaa----------------ga-gcttagctgcacaaag
B D                Microbat  ttgg--------------gtctccttatgcaagaa----------------ga-gcttagctgcacaaag
B D                Hedgehog  ttag--------------cactccttatggaagag----------------ga-gctcaa----------
B D                   Shrew  gtag--------------atctccttacggaagac----------------aa-gctcggtcgagcaaag
            Star-nosed mole  ttgg--------------gtctccgtatggaagag----------------ga-gctcagttgaacaaag
B D                Elephant  ttgg--------------gtctccttatggaag-g----------------ga-gctcat-tgaa-aaag
        Cape elephant shrew  ttca--------------gactccttatggaagag----------------aa-gctcag-tgaataaag
B D                 Manatee  ttag--------------gtctccttagggaagag----------------ga-gctcag-tgaacaaag
           Cape golden mole  ---g--------------gtttccttatggatgag----------------ga-gctcag-tgaacagag
B D                  Tenrec  ---t--------------gtctcctcatgggagag----------------ga-gcccag-ggagccaag
                   Aardvark  ttgg--------------gtctctttatggaagag----------------ga-gctcag-tgaacaaag
B D               Armadillo  -tat--------------gtctcctaattgaagag----------------ga-gctcagctgaacaaag
B D                 Opossum  --------------------------------gac----------------ag-gc-----------ggc
B D         Tasmanian devil  --------------------------------gaa----------------ag-gc-----------ggt
B D                 Wallaby  --------------------------------ggg----------------ag-actca--------ggg
  D  White-throated sparrow  ctga--------------gtcttc-tggagcatgg----------------gg-ggctgg----gcaggc
  D                  Parrot  ttgataaggggataccccatctcc-catagcacagcacctttattgaggacag-gattgg-tgcacaggt
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================
B D               Zebrafish  ======================================================================
B D              Coelacanth  ======================================================================
               Spotted gar  ======================================================================
       Pundamilia nyererei  ======================================================================
     Burton's mouthbreeder  ======================================================================
  D         Green seaturtle  ======================================================================
  D     Collared flycatcher  ======================================================================
B D           X. tropicalis  ======================================================================
B D              Budgerigar  ======================================================================
  D           Scarlet macaw  ======================================================================
B D                Platypus  ======================================================================
B D     Medium ground finch  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
B D                  Turkey  ======================================================================
B D                 Chicken  ======================================================================
B D                  Lizard  ======================================================================
B D                  Medaka  ======================================================================
B D             Zebra finch  ======================================================================
  D          Painted turtle  ======================================================================
        Tibetan ground jay  ======================================================================
  D             Rock pigeon  ======================================================================
  D            Mallard duck  ======================================================================
B D      American alligator  ======================================================================

                      Human  cctggag-g-------aca----tattcc--at-----------ag-gccacaggccc-tt
                      Chimp  cctggag-g-------aca----tattcc--at-----------ag-gccacaggccc-tt
                    Gorilla  cctggag-g-------cca----tattcc--at-----------ag-gccacaggccc-tt
                  Orangutan  cctggag-g-------cca----tattcc--at-----------ag-gccacaggccc-tt
                     Gibbon  cctggag-g-------cca----tattcc--at-----------ag-gccacaggccc-tt
                     Rhesus  cctggaa-g-------cca----tattc-----------------------caggccc-tt
        Crab-eating macaque  cctggaa-g-------cca----tattc-----------------------caggccc-tt
                     Baboon  cctggaa-g-------cca----tattc-----------------------caggccc-tt
               Green monkey  cctggaa-g-------cca----tattc-----------------------caggccc-tt
                   Marmoset  cctggag-g-------cca----tattcc--at-----------ag-gccacaggccc-tt
            Squirrel monkey  cctggag-g-------cga----tgttcc--at-----------ag-gccacaggccc-tt
                   Bushbaby  cctcaag-g-------cca----agatgcatat-----------ag-gctacaggctc-tt
         Chinese tree shrew  cctggag-g-------cca----tactgt--at-----------tg-gccacaggccc-tc
                   Squirrel  cctggag-g-------tcc----tattat--gt-----------at-gccacagg------
     Lesser Egyptian jerboa  cctagag-g-------cca----tgttct--ac-----------ag-gccacaggccc-tc
               Prairie vole  cttcaag-g-------cca----tgctat--at-----------ag-gccataggcac-ta
            Chinese hamster  cttca---------------------------------------ag-gccataggtgc-tt
             Golden hamster  cttcaag-g-------cca----tgctgt--at-----------ag-gccataggcac-tt
                      Mouse  -------------------------------------------------------------
                        Rat  cctcaag-g-------cca----tgctat--ct-----------ag-gccataagtgc-tc
             Naked mole-rat  cctagag-g-------cca----tactct--gt-----------ag-gccacaggctc-tc
                 Guinea pig  cctgaaa-a-------cca----tatttt--gt-----------ag-acgacaggttc-tc
                 Chinchilla  cctgaag-g-------cca----tactgt--gt-----------ag-gccacaggctc-tt
           Brush-tailed rat  cctgaag-g-------cca----tactcc--gt-----------ag-gccacaggctc-tc
                     Rabbit  catggag-a-------cca----tactcc--ac-----------ag-gccacaggccc-ta
                       Pika  cttggag-g-------ccc----g--------------------ag-gccacaggccc-tt
                        Pig  cccagag-g-------cca----cagtcc--gg-----------ag-atcagagttcc-tt
                     Alpaca  cctagaa-g-------cca----tagtcc--ag-----------ag-acc--aggccc-tt
             Bactrian camel  cctggaa-g-------cca----tagtcc--ag-----------ag-acc--aggccc-tt
                    Dolphin  cccaaag-g-------cca----tagtcc--ag-----------ag-accaaaggccc-tc
               Killer whale  tccgaag-g-------cca----tagtcc--ag-----------ag-accaaaggccc-tc
           Tibetan antelope  cctggag-g-------cca----tagtct--ag-----------ag-accagaggccc-cc
                        Cow  cctggag-g-------cca----tagtct--ag-----------ag-accagaggccc-cc
                      Sheep  cctggag-g-------cca----tagtct--ag-----------ag-accagaggcgc-cc
              Domestic goat  cctggag-g-------cca----tagtct--ag-----------ag-accagaggctc-cc
                      Horse  cctggag-g-------cca----cagtcc--at-----------ag-accaaagacct-tg
           White rhinoceros  cctggag-g-------cca----tagtcc--at-----------ag-accaaaggcct-tt
                        Cat  cctagag-g-------cca----cagacc--gt-----------ag-accaaaggcct-tt
                        Dog  cctggag-gccacagacca----tagacc--ac-----------ag-accaaaggccc-tt
                    Ferret   cctggag-g-------cca----tagacc--at-----------ag-accaaagacccttt
                      Panda  cctggag-g-------cca----tagacc--at-----------ag-tccaaaggtcc-tt
             Pacific walrus  cctggag-g-------cca----tagacc--at-----------ag-accaaaggcgc-tt
               Weddell seal  cctggag-g-------cca----tagacc--at-----------ag-accaaaggccc-tt
           Black flying-fox  tctggcg-g-------tca----tagtcc--at-----------ag-accaaaggtcc-tt
                    Megabat  tctggcg-g-------tca----tagtcc--at-----------ag-accaaaggtcc-tt
              Big brown bat  cctggagag-------tca----tagtcc--at-----------ag-accaaaggccc-tt
       David's myotis (bat)  cctggagag-------tca----tagtcc--at-----------ag-accaaaggccc-tt
                   Microbat  cctggagag-------tca----tcgtcc--at-----------ag-accgaaggccc-tt
                   Hedgehog  -ctggag-g-------cca----gagtct--gt-----------ag-gccaaaggccg-ta
                      Shrew  cttggag-g-------cc-------gtcc--tc-----------agagcc-caggcct-tg
            Star-nosed mole  cctggag-g-------cca----gggtcc--at-----------ag-gcc-aaggccc-ta
                   Elephant  tctggaa-g-------cc-------------aa-----------ag-g-------ccc-tt
        Cape elephant shrew  tctggaa-g-------cc-------------at-----------ag-gccagagaccc-tt
                    Manatee  tctggaa-g-------cc-------------at-----------ag-gccaaaggccc-tt
           Cape golden mole  tctggaa-g-------cc-------------at-----------ag-gccaaaagcct-tt
                     Tenrec  tctggaa-g-------cc-------------at-----------gg-gccaa---------
                   Aardvark  tctggaa-g-------cc-------------ac-----------ag-tccaaaggcctgtt
                  Armadillo  cctggaa-g-------cc-------------at--agctgac--ag-gcgaaaggccc-tt
                    Opossum  tctggaa-g-------ag-------------tcctcgctagtcggg-gctcggcagct-gc
            Tasmanian devil  tctgtaa-g-------ac-------------tc-----------gg-gctccatgtga-ca
                    Wallaby  cttggta-t-------ct-------------ac-----------ag-gctccatgtga-ca
     White-throated sparrow  tgaggta-g--------------ttgtcc--tg----------------------------
                     Parrot  ggcagtg-g-------ccagggcctgtcc--cg----------------------------
        Princess of Burundi  =============================================================
               Nile tilapia  =============================================================
                  Tetraodon  =============================================================
                Zebra mbuna  =============================================================
                  Zebrafish  =============================================================
                 Coelacanth  =============================================================
                Spotted gar  =============================================================
        Pundamilia nyererei  =============================================================
      Burton's mouthbreeder  =============================================================
            Green seaturtle  =============================================================
        Collared flycatcher  =============================================================
              X. tropicalis  =============================================================
                 Budgerigar  =============================================================
              Scarlet macaw  =============================================================
                   Platypus  =============================================================
        Medium ground finch  =============================================================
           Peregrine falcon  =============================================================
               Saker falcon  =============================================================
                     Turkey  =============================================================
                    Chicken  =============================================================
                     Lizard  =============================================================
                     Medaka  =============================================================
                Zebra finch  =============================================================
             Painted turtle  =============================================================
         Tibetan ground jay  =============================================================
                Rock pigeon  =============================================================
               Mallard duck  =============================================================
         American alligator  =============================================================

Alignment block 17 of 1514 in window, 98248721 - 98248894, 174 bps 
B D                   Human  a-gg--ggcaggcccagagccatcctgag----------ggagc--------aatac-ca--tctgga--
B D                   Chimp  a-gg--ggcaggcccagagccatcctgag----------ggagc--------aatac-ca--tctgga--
B D                 Gorilla  a-gg--ggcaggcccagagccatcctgag----------ggagc--------aatac-ca--tctgga--
B D               Orangutan  a-gg--ggcaggcccagagccatcctgag----------ggagc--------agtac-ca--tctgga--
B D                  Gibbon  a-gg--ggcaggcccagagccatcctgag----------ggagc--------agtac-ca--tctgga--
B D                  Rhesus  aggg--ggtaggcccagtgccaccctgaa----------gaagc--------agtac-ca--tctgga--
B D     Crab-eating macaque  aggg--ggtaggcccagtgccaccctgaa----------gaagc--------agtac-ca--tctgga--
B D                  Baboon  aggg--ggtaggcccagtgccaccctgaa----------gaagc--------agtac-ca--tctaga--
B D            Green monkey  aggg--ggtaggcccagtgccaccctgaa----------gaagc--------agtac-ca--tctgga--
B D                Marmoset  aggg--gacaggcccagagccatccagag----------ggagc--------agtac-ca--tctgga--
B D         Squirrel monkey  aggg--gacaggtccagagccatcctgag----------ggagc--------agtac-ca--tctgga--
B D                Bushbaby  aggg--aaccgg-ccagagccatcctgtg----------ggagc--------agtac-ca--tctgga--
         Chinese tree shrew  a-gg--gacaggcccggagccatcccgag----------ggggc--------ggtcc-ca-ttctagt--
B D                Squirrel  ---a--gacagacccagaaccatcctgag----------ggagc--------gatac-cg--tcctgg--
     Lesser Egyptian jerboa  --tg--gagaggcctagagccatcctgag----------cgagc--------actac-ca--ttatgg--
               Prairie vole  --gg--aagaggcttagagccatcctga------------gagt--------gctgc-ca--tccagg--
B D         Chinese hamster  --gg--aagaggcccagagccatcctga------------gact--------gctgc-ca--tccggg--
             Golden hamster  --gg--gagaggcccagagccatcctga------------gact--------gctgc-ca--tcc-gg--
B D                   Mouse  -------------ccagagccatcctga------------gaga--------actgc-ca--tcccgg--
B D                     Rat  --tg--gagggg-ccagagccgtcctga------------gagt--------actgc-ca--tccc-g--
B D          Naked mole-rat  aagg--gacaggcccagaaccatcctgag----------ggagc--------agtat-ca--ttcagg--
B D              Guinea pig  cagg--gacaggcccagagccatcatgag----------ggagc--------agtat-ca--ttcagg--
                 Chinchilla  aagg--gacaggcctagagctatcctgag----------ggagc--------agtat-ca--ttcagg--
           Brush-tailed rat  gagg--gacaggccccgagccctcctgag----------ggagc--------ggtat-ca--tt-agg--
B D                  Rabbit  cggg--gagaggcccatagccacccaaag----------ggagc--------agtac-ca--tcctgg--
B D                    Pika  aggggagagaggcccacggctaccctaag----------cgagc--------agtac-ta--t-ctgg--
B D                     Pig  aggg--gacagacccagagccatcctgag----------ggagc--------agtgc-ca--tcctgg--
B D                  Alpaca  aggg--gacaggcccggggccatcctgag----------ggagc--------agtgc-ca--tcctgg--
             Bactrian camel  aggg--gacaggcccagggccatcctgag----------ggagc--------agtgc-ca--tcctgg--
B D                 Dolphin  aggg--gatagacccagagccatcctgag----------ggagc--------agtgc-cg--ccctgg--
               Killer whale  aggg--gatagacccagagccatcctgag----------ggagc--------agtgc-ca--ccctgg--
           Tibetan antelope  aggg--atcagacccagagccatcctgag----------ggagc--------ggtgc-ca--ttctgg--
B D                     Cow  aggg--atcagacccagagccatcctgag----------ggagc--------ggcgc-ca--ttctgg--
B D                   Sheep  aggg--atcagacccagagccatcctgag----------ggagc--------ggtgc-ca--ttctgg--
              Domestic goat  aggg--atcagacccagagccatcctgag----------ggagc--------ggtgc-ca--ttctga--
B D                   Horse  aggg--gacaggtccagagccatcctgag----------ggagc--------agtac-ca--tcctgg--
B D        White rhinoceros  aggg--gacaggcccagagccatcctgag----------ggagc--------agtac-ca--tcctgg--
B D                     Cat  acag--gacaggcccagagtcatcctgag----------ggagc--------agtac-ca--tttc-a--
B D                     Dog  aaaa--gataggcccagag---tcctgag----------ggagc--------agtac-ca--ttttgg--
B D                 Ferret   aggg--gacaggcccagagtcctcctgag----------ggaac--------agtac-ca--ttttgg--
B D                   Panda  a-gg--gacaggcccagagtcctcctgag----------ggagc--------agtac-ca--tttcgg--
             Pacific walrus  aggg--gacaggcccagagtcctcctgag----------ggagc--------agtac-ca--ttttgg--
               Weddell seal  aggg--gacaggcccagagtcctcctgag----------ggagc--------agtac-ca--ttttgg--
           Black flying-fox  aggg--gacaggcccagagccatccaaag----------ggagc--------agtac-ca--tcctgg--
B D                 Megabat  aggg--gacaggcccagagccatccaaag----------ggagc--------agtac-ca--tcctgg--
              Big brown bat  aggg--gacaggcctagagccatcccaag----------ggagc--------tgtac-ca--tcctgg--
       David's myotis (bat)  aggg--gacaggcctagagccatcccaag----------ggagc--------agtac-ca--tcctgg--
B D                Microbat  aggg--gaca-gcctagagccatcccaag----------ggagc--------agtac-ca--tcctgg--
B D                Hedgehog  aggg--gccaggttcagagccctcatgaa----------ggttc--------agtat-ca--tgctgg--
B D                   Shrew  gggg--ctagacc------------------------------a--------tgaac-cc--tcctgg--
            Star-nosed mole  gggg--aacaacctgagagccctcctgag----------ggagc--------tgtgc-ca--tcctgg--
B D                Elephant  aggg--gatagacccagcaccatcctgag----------ggagc--------agtac-ca---tctgg--
        Cape elephant shrew  cgtg--aataggcccagcaccatcccgag----------ggagc--------agtgg-ca--gcctgg--
B D                 Manatee  aggg--gataggcccagtgccatcctgag----------ggagc--------agtaa-ca---tctgg--
           Cape golden mole  agca--gataggcccagcaacat----------------------------------------cctgg--
B D                  Tenrec  ---------aggcccagcaacat----------------------------------------cctgc--
                   Aardvark  aggg--gacaggcccagcaccatcctgag----------ggagc--------agtac-ca--tccttg--
B D               Armadillo  aggg--gtcacacccagagccatcctgag----------ggagc--------tgtac-ca--tcctgg--
B D                 Opossum  acgc--cccgagcccgggcctgtccgtag----------ggagc--------tgtgcaca--gcctgg--
B D         Tasmanian devil  aagg--tccaagccca-tgctatccttgg----------ggggc--------tgtgctca--tcctgc--
B D                 Wallaby  aaag--tccaagcccagtgccgtctttag----------ggagc--------tgtgcatg--gcc-ga--
  D  White-throated sparrow  -ggg------gccctggggctgt----------------ggagc--------tgagg-tc--tgctgcag
  D                  Parrot  -agg--cagcaggctgaggtagtcatccttggggggaccggagccaccaaggcgggg-gc--tgctgtgg
B D      American alligator  -agg--gcctggcccccggctgtcgtctgc---------ggggt--------cgggg-ccagtgctgc--
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================
B D               Zebrafish  ======================================================================
B D              Coelacanth  ======================================================================
               Spotted gar  ======================================================================
       Pundamilia nyererei  ======================================================================
     Burton's mouthbreeder  ======================================================================
  D         Green seaturtle  ======================================================================
  D     Collared flycatcher  ======================================================================
B D           X. tropicalis  ======================================================================
B D              Budgerigar  ======================================================================
  D           Scarlet macaw  ======================================================================
B D                Platypus  ======================================================================
B D     Medium ground finch  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
B D                  Turkey  ======================================================================
B D                 Chicken  ======================================================================
B D                  Lizard  ======================================================================
B D                  Medaka  ======================================================================
B D             Zebra finch  ======================================================================
  D          Painted turtle  ======================================================================
        Tibetan ground jay  ======================================================================
  D             Rock pigeon  ======================================================================
  D            Mallard duck  ======================================================================

                      Human  --------------ttggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttggt
                      Chimp  --------------ttggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttggt
                    Gorilla  --------------ttggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttggt
                  Orangutan  --------------ttggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttggt
                     Gibbon  --------------ttggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttggt
                     Rhesus  --------------ttggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttggt
        Crab-eating macaque  --------------ttggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttggt
                     Baboon  --------------ttggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttggt
               Green monkey  --------------ttggtg-atcttg-catc---aaaaggcttcctg--agcagg------ttcttggt
                   Marmoset  --------------ttggtg-atcttgccatc---a-gaggcttcctg--agcagg------ttctttgt
            Squirrel monkey  --------------ttggtg-atcttgccatc---a--aggcttcctg--agcagg------ttctttgt
                   Bushbaby  --------------ttggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttgat
         Chinese tree shrew  --------------ttggtg-atcttgcctac---agaaggcttcctg--agcagg------ttcatggt
                   Squirrel  -------------tttggtg-atcttgccatc---aaaatgtttcctg--agcaag------ttcttggt
     Lesser Egyptian jerboa  -------------tgtggtg-atcttgccatc---aaaaggcttcctg--agcagg------ttcttggt
               Prairie vole  --------------gtggtg-atctggccatc---aaaatgcttcctg--agcagg------ttctcggt
            Chinese hamster  --------------gtggtg-atctggccatc---aaaaggcttcctg--agcagg------ttcttggt
             Golden hamster  --------------gtgggg-atctggctgtc---aaaaggcttcctg--agcagg------ttcttggt
                      Mouse  --------------gtgatg-atctggccacc---gaaaggcctcctg--agcagc------ttcttggt
                        Rat  --------------gtgatg-atctggccact---gaaaggcttcctg--agcagc------ttcttggt
             Naked mole-rat  -------------tttggtg-attgtgccatc---aaaaggcttcctg--agcatg------ttcttggt
                 Guinea pig  -------------tttggtg-attgtactatc---aaaagacttcctg--agtatc------cttttggt
                 Chinchilla  -------------tttggtg-attg--ccttc---agaaggcttcctg--agta----------tgtggt
           Brush-tailed rat  -------------tttggtg-attg--ccttc---agaaggcttcctg--agta----------cgtggt
                     Rabbit  -------------tttggtg-atcttgccatc---caaaggcttcctg--agcagg------tactcgat
                       Pika  -------------tttggtc-atctcgacttc---aaaaggcttcctg--agcagg------ttcttggt
                        Pig  -------------tttggcg-atctggccatc---aaaaggcttcctg--agcagg------ttcttggt
                     Alpaca  -------------tttggtg-gtcttgccgtc---aaaaggcttcctg--agcgtg------ttgctggt
             Bactrian camel  -------------tttggtg-atcttgccatc---aaaaggcttcctg--agcgtg------ttgctggt
                    Dolphin  -------------tgtggtg-atcttgccatc---agaaggcttcctg--agctgg------ttcttggt
               Killer whale  -------------tgtggtg-atcttgccatc---agaaggcttcctg--agctgg------ttcttggt
           Tibetan antelope  -------------tttggtg-atcttgccatc---taaaggcttcctg--agtggg------ttcctggt
                        Cow  -------------tttggtg-atcttgctatc---taaaggcttcctg--agcggg------ttcccggt
                      Sheep  -------------tttggtg-atcttgccatc---taaaggcttcctg--agtggg------ttcctggt
              Domestic goat  -------------tttggtg-atcttgccatc---taaaggcttcctg--agtggg------ttcctggt
                      Horse  -------------tttggtg-a-attgccatc---aaaaggcttcctg--agcagg------ttcttggt
           White rhinoceros  -------------tttggtg-a-cttgccatc---aaaaggcttcctg--agcagg------ttcttggt
                        Cat  -------------tttgatg-atcttgccatc---aaagggcttcctg--agca-g------ttcttggt
                        Dog  -------------tttggtg-atcttgccatc---aataggcttcctg--agca-g------ttcttgtt
                    Ferret   -------------tttgatg-gccttgccatc---aaaaggcttcctg--agcg-g------ttcttggt
                      Panda  -------------tttgatg-atcttgccatc---aaaaggcttcctg--agca-g------ttcttggt
             Pacific walrus  -------------tctggtg-atcttgccatc---caaaggcttcctg--agca-g------ttcttggt
               Weddell seal  -------------tctggtg-atcttgccatc---aaaaggcttcctg--agca-g------ttcttggt
           Black flying-fox  -------------tttggtg-atcttgccctc---aaaaggcttcctg--agca-g------ttcttggt
                    Megabat  -------------tttggtg-atcttgccctc---aaaaggcttcctg--agca-g------ttcttggt
              Big brown bat  -------------tttggtg-atcttgccatc---aaaaggcttcctg--agca-a------ttcttggc
       David's myotis (bat)  -------------tttggtg-atcttgccatc---aaaaggcttcctg--agca-a------ttcttggc
                   Microbat  -------------tttggtg-atcttgccatc---aaaaggcttcctg--agca-a------ttcttggc
                   Hedgehog  -------------cttggtc-atc-----------aaacagcttcctg--agcagg------aacttggt
                      Shrew  -------------cctggtg-atctcgccatc---caaaggcttcctg--agcagc------tgctcggt
            Star-nosed mole  -------------ttcagtg-atcctgccat----caaaggcttcctg--agcagg------ttctcggt
                   Elephant  -------------tctggtg-ataccaccttc---aaaaggcttcctg--agcagg------ttcttggt
        Cape elephant shrew  -------------tttgagg-atctcgccttc---caaaggcttcctg--agcaga------ttcttggt
                    Manatee  -------------tttggtg-gtaacgccttc---aaaaggcttcctg--agcagg------ttcttggt
           Cape golden mole  -------------tttggta-atctcgccttc---agaagacttcctg--agcagg------ttgttggt
                     Tenrec  -------------ttggatg-gtttcgcctaccaaaggaggcttcctg--agcagc------agcttggt
                   Aardvark  -------------tttgatg-atctcgccttc---agaaggcttcctg--agcagg------ttc-----
                  Armadillo  -------------tttggtc-atcttgccttc---gaaaggcttcctg--agctg-------ttgttggt
                    Opossum  -------------ctcggcg-ttctccccttt---c-aaggctccctg--agcatc------ttcttggt
            Tasmanian devil  -------------tctggca-ttctctccttc---c-aaggctccctg--agcgta-------tcttgtc
                    Wallaby  -------------tttggca-tgttccccttc---c-aaggctcgctg--agtata------ctcttgtc
     White-throated sparrow  tactggggccactctttcca-atcctgctggc---agca-------tg--ggca-c------ccccaggc
                     Parrot  tacc-cgggccccacttgcaggtcctgctgat---ggtgcag-ggctg--agcacc------ccccaggc
         American alligator  -----gtgccacccgctgcc-ttagagccgag---agctcggtggctgccagtgccggagggcgccgggg
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
                   Platypus  ======================================================================
        Medium ground finch  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                     Medaka  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================

                      Human  gccccttg---gcac--tgg-cccttttcct-ctgagttgggactc-tgt---gaa-gggcatggctcca
                      Chimp  gccccttg---gcac--tgg-cccttttcct-ctgagttgggactc-tgt---gaa-gggcatggctcca
                    Gorilla  gccccttg---gcac--tgg-cccttttcct-ctgagttgggactc-tgt---gaa-gggcatggctcca
                  Orangutan  gccccttg---gcac--tgg-cccttttcct-ctgagttgggactc-tgt---gaa-gggcatggctcca
                     Gibbon  gccccttg---gcac--tgg-cccttttcct-ctgagttgtgactc-tgt---gaa-gggcatggctcca
                     Rhesus  gccccttg---gcac--tgg-cccttttcct-ctgagttgggactc-tgt---gaa-gggcatggctcca
        Crab-eating macaque  gccccttg---gcac--tgg-cccttttcct-ctgagttgggactc-tgt---gaa-gggcatggctcca
                     Baboon  gccccttg---gcac--tgg-cccttttcct-ctgagttggga--c-tgt---gaa-gggcatggctcca
               Green monkey  gccccttg---gcac--tgg-cccttttcct-ctgagttgggactc-tgt---gaa-gggcatggctcca
                   Marmoset  gccccttg---gtac--tgg-cctttttcct-ctgagttgggactc-tgt---gaa-gggcatggctcca
            Squirrel monkey  gccccttg---gcac--tgg-cccttttcct-ctgagttgggactc-tgt---gaa-gggcatggctcca
                   Bushbaby  gccccttg---gcac--tggccccttttcct-ctgaattagggctc-cat---gaa-gggcatggctcca
         Chinese tree shrew  gccccttg---gcac--tggccccccttgct-ctgggtcagggctc---t---gaa-gggcatggctcca
                   Squirrel  gccccttg---acac--tgggcccctttccttataggtcagagctc-tgt---gaa-gggcatggctcca
     Lesser Egyptian jerboa  gccccttg---gcacattgaccccttttcctcttgagtcagggctc-tgt---gaa-gggcatggctcca
               Prairie vole  gctccttg---tcac--tggccccttgtcct-gtgcgccggggctc-tgt---gaa-gggcacggctccc
            Chinese hamster  gctccttg---tcac--tggccccttgtcct-gtgagttggggctc-tgt---gaa-gggcatggctcca
             Golden hamster  gctccttg---tcac--tggcccctggtcct-gtgagtcggggctc-tgt---gaa-gggcgtggctcca
                      Mouse  gctccttg---tcac--tagccccttgtcct-gtgagtcagggctt-tgt---gaa-gggcatggctcca
                        Rat  gctccttg---tcac--tggccccttgtcct-gtgagtcagggctt-tgt---gaa-gggcatggctcca
             Naked mole-rat  gccctttg---gaat--tggccccttttcctcttgagtcaggactg---t---gaa-gggcatggctcca
                 Guinea pig  gccctttg---gaat--tggccccttttacttttgggtcaggacct---t---gaa-ggacttggctcca
                 Chinchilla  gccctttg---gaat--tcgccccttttcctcttgagtcaggactc---t---gaa-gggcatggctcca
           Brush-tailed rat  gcccttcg---gaat--cagcccctt------gtgagtcaggactc---------a-gggcatggctcca
                     Rabbit  gccccttg---gcac--tggccccatttact-atgaattagggctc-tgt---gaa-gggcatggctcca
                       Pika  gtcccttg---gccc--cggccccattgcct-gtgaatgaggcatc-tgt---gaa-ggacatggctcca
                        Pig  gcccattg---gcac--tggccccttgccct-ctgagtctgggct---gt---gaa-gggcatggctcca
                     Alpaca  gccccttg---gcac--cggcccctttccct-ctgagttagggctc-tgt---gaa-gggcatggctcca
             Bactrian camel  gccccttg---gcac--cggcccctttccct-ctgagttagggctc-tgt---gaa-gggcatggctcca
                    Dolphin  gccccttg---gcac--tggccccttaccct-ctgagttagggctc-tgt---gaa-gggcatggctcca
               Killer whale  gccccttg---gcac--tggccccttaccct-ctgagttagggctc-tgt---gaa-gggcatggctcca
           Tibetan antelope  gcctcttg---gcgc--tggcccctttccct-ctgcatcagggctc-ggt---gaa-gggcatggctcca
                        Cow  gcttcctg---gcgc--tggcccctttccct-ctgtgtcagggctc-ggt---gaa-gggcatggctcca
                      Sheep  gcctcttg---atgc--tagcccctttccct-ctgcatcagggctc-ggt---gaa-gggcatggctcca
              Domestic goat  gcctcttg---gcgc--tagcccctttccct-ctgcatcagggctc-ggt---gaa-gggcatggctcca
                      Horse  gccctttg---gcac--tggcccctttccct-ctgagctagggctc-tgt---gaa-gggcatggctcca
           White rhinoceros  gccctttg---gcac--tggcccctttccct-ctgagttagggctc-tgt---gaa-gggcatggctcca
                        Cat  gccacttg---gcac--tggcccctttcctt-ctgagttagggctc-tgt---gaa-gggcatggctcca
                        Dog  gcccctta---gcac--tggcccctctccct-ctgagttagggctc-tct---gaa-gggcatggctcca
                    Ferret   gccccttg---gcac--tgacccctttccct-ctgagttagggctc-tgt---gaa-gggcatggctcca
                      Panda  gccgcttg---gcac--tggcccctttccca-ctgagttagggctcttgg---gaa-gggcatggctcca
             Pacific walrus  gccccttg---gcac--tggcccctttccct-ctg----agggcgc-tgt---gaa-gggcatggctcca
               Weddell seal  accccttg---gcac--tggcccctttccct-atg----agggcgc-tgt---gaa-gggcatggctcca
           Black flying-fox  gccccttg---gcac--tggccctcttctct-ctgagttagggttc-tgt---gaa-gggcatggctcca
                    Megabat  gccccttg---gcac--tggccctcttctct-ctgagttagggttc-tgt---gaa-gggcatggctcca
              Big brown bat  gccccttg---gcac--tggcccatttccct-ctgagtcagggttc-tgt---gaa-gggcatggctcca
       David's myotis (bat)  gccccttg---gcac--tggcccatttccct-ctgagtcagggttc-tgt---gaa-gggcacggctcca
                   Microbat  gccccttg---gcac--tggcccatttccct-ctgagtcagggttc-tgt---gaa-gggcacggctcca
                   Hedgehog  gccccttg---acat--tagtccctctccat-ctgagtcagggctc-tgt---gaa-gggcatggctcca
                      Shrew  gctccttg---ggtc--ggg-ccctctccc-------------cgc-cga---gagcgggcatggctcca
            Star-nosed mole  gc-cctcg---gcac--cgg-ccctgtccct-ctgagttagggctc-cgt---gaa-gagcatggctcca
                   Elephant  gccccttg---gcac--tggcccctttccct-ctgagttagggctc-tgt----aa-gggcatggctcca
        Cape elephant shrew  gccccttg---gcac--aagcccctttccct-ctgagttagggctc-tgt---caa-gggcatggcttca
                    Manatee  gccctttg---gcac--tggccca--------cagagttagggctc-tgt---gaa-gggcatggctcca
           Cape golden mole  gccccttg---gcac--tggcccctttccct-ctgaattagggctc-tgt---gaa-gggcatggctcca
                     Tenrec  gcctgttg---gcac--tggcccctttccct-ccgaattggggctc-tgt---gaa-ggacatggctcca
                   Aardvark  -----ttg---gcac--tggcccc------t-gtgagcttgggctc-tg-----aa-gggcgtggctcca
                  Armadillo  gccccttg---gcac--tggccccttttctt-ctgaattagggccc-tgtaaagaa-gggcttggctcca
                    Opossum  gcttctgg----cgc--tgt-cccctcgtca-cgagg-----gc-------------------cgctcca
            Tasmanian devil  gcttctgg---acgc--tct--ccctcatca-ggaggctgaagctc-cat---gag-gggac-ggctcca
                    Wallaby  gcttctgg---gcac--tgt-cccctcctca-ggaggctgaagc-c-cat---gaa-ggctctggctcca
     White-throated sparrow  actccctgccagccc--tggcgctcatctcc-----------ctcc-tct---gca-gc----agcatca
                     Parrot  actccccactggccc--tggtgcttgtctcc-----------atcc-gct---gca-gc----agcatca
         American alligator  cctgctgggctgccc--gcgcgcagggcctg-----------gccg-cct---gca-gc-----------
        Princess of Burundi  ======================================================================
               Nile tilapia  ======================================================================
                  Tetraodon  ======================================================================
                Zebra mbuna  ======================================================================
                  Zebrafish  ======================================================================
                 Coelacanth  ======================================================================
                Spotted gar  ======================================================================
        Pundamilia nyererei  ======================================================================
      Burton's mouthbreeder  ======================================================================
            Green seaturtle  ======================================================================
        Collared flycatcher  ======================================================================
              X. tropicalis  ======================================================================
                 Budgerigar  ======================================================================
              Scarlet macaw  ======================================================================
                   Platypus  ======================================================================
        Medium ground finch  ======================================================================
           Peregrine falcon  ======================================================================
               Saker falcon  ======================================================================
                     Turkey  ======================================================================
                    Chicken  ======================================================================
                     Lizard  ======================================================================
                     Medaka  ======================================================================
                Zebra finch  ======================================================================
             Painted turtle  ======================================================================
         Tibetan ground jay  ======================================================================
                Rock pigeon  ======================================================================
               Mallard duck  ======================================================================

                      Human  ataagctgaggtatctg--g------t-------------------gtatcggca
                      Chimp  ataagctgaggtatctg--g------t-------------------gtatcggca
                    Gorilla  ataagctgaggtatctg--g------t-------------------gtattggca
                  Orangutan  ataagctgaggtatctg--g------t-------------------gtatcggca
                     Gibbon  ataagctgaggtatctg--g------t-------------------gtatcggca
                     Rhesus  gtaagctgaggtatctg--g------t-------------------gtattggca
        Crab-eating macaque  gtaagctgaggtatctg--g------t-------------------gtattggca
                     Baboon  gtaagctgaggtatctg--g------t--------------------tatcggca
               Green monkey  gtaagctgaggtatctg--g------t-------------------gtatcagca
                   Marmoset  ataagctgaggtatctg--g------t-------------------gtatcggca
            Squirrel monkey  gtaagctgaggtatctg--g------t-------------------gtatcggca
                   Bushbaby  aaaagctgaggtatctg--a------t-------------------gtgtggaca
         Chinese tree shrew  gtaa-ctgaggtatgtg--g------t-------------------gtg--ggca
                   Squirrel  ataagctgaggtatttgacg------t-------------------gtgtgggca
     Lesser Egyptian jerboa  gtaagctgaggtatctg--g------t-------------------ttgtgagca
               Prairie vole  gtaagctgaggtatctg--g------t-------------------gtgt-agct
            Chinese hamster  gtaagctgaggtatctg--g------t-------------------gtgtgagca
             Golden hamster  gtaagctgaggtatctg--g------t-------------------gtgtgagca
                      Mouse  gtcagctgaggtatctg--g------t-------------------gtgtgagca
                        Rat  gtaagctgaggtatctg--g------t-------------------gtgtgagcg
             Naked mole-rat  ataagctgaggtatctg--g------t-------------------gtgtgggca
                 Guinea pig  ataagttgaggtatctg--g------t-------------------gtgtgggca
                 Chinchilla  ataagttgaggtatctg--g------t-------------------gtatgggca
           Brush-tailed rat  gtaagttgaggtatctg--g------t-------------------gtgtgggca
                     Rabbit  gtaagctgaggtatctg--gtgttggt-------------------gtgtaggca
                       Pika  gtcagctgaggtatctg--gtgttgat-------------------gtgtgggca
                        Pig  ataaactgaggtatctg--g------t-------------------gtgtgggca
                     Alpaca  ataagctgaggtatctg--g------t-------------------gtgtgggca
             Bactrian camel  ataagctgaggtatctg--g------t-------------------gtgtgggca
                    Dolphin  ataagctgaggtatctg--g------t-------------------gtgtgggca
               Killer whale  ataagctgaggtatctg--g------t-------------------gtgtgggca
           Tibetan antelope  gtaagctgaggtatc----g------t-------------------gtgtgggca
                        Cow  gtaagctgaggtatctg--g------t-------------------gtgtgggca
                      Sheep  gtaagctgaggtatctg--g------t-------------------gtgtgggca
              Domestic goat  gtaagctgaggtatctg--g------t-------------------gtgtgggca
                      Horse  ataagctgaggtatctg--g------t-------------------gtgtgggca
           White rhinoceros  ataagctgaggtatctg--g------t-------------------gtgtgggca
                        Cat  ataagctgaggtatctg--g------t-------------------gtgtgggca
                        Dog  ataagctgaggtatctg--g------t-------------------gtgtgggca
                    Ferret   ataagctgaggtatctg--g------t-------------------gtgtgggca
                      Panda  ataagctgaggtatctg--g------t-------------------gtgtgggca
             Pacific walrus  gtaagctgaggtatctg--g------t-------------------gtgtgggca
               Weddell seal  ataagctgaggtatctg--g------t-------------------gtgtgggca
           Black flying-fox  ataagctgaggtatctg-----------------------------gtgtgggca
                    Megabat  ataagctgaggtatctg-----------------------------gtgtgggca
              Big brown bat  ataagctgaggtatctg--a------t-------------------gtgtgggca
       David's myotis (bat)  ataagctgaggtatctg--g------t-------------------gtgtgggca
                   Microbat  ataagctgaggtatctg--g------t-------------------gtgtgggca
                   Hedgehog  ataagctgaggtatttg--a------t-------------------gtgtgggca
                      Shrew  gtaagctgaggtatctg--g------t-------------------gtgtgggcc
            Star-nosed mole  gtaagctgaggtatctg--g------t-------------------gtgtgggca
                   Elephant  gtaagctgaggtatctg--g------t-------------------gtgtaggca
        Cape elephant shrew  ataagctgaggtatctg--g------t-------------------gtgtgggca
                    Manatee  gtaagctgaggtatctg--g------t-------------------gtgtgggca
           Cape golden mole  gtaagctgaggtatctg--g------t-------------------gtgtgg---
                     Tenrec  gtaagctgaggtatctg--g------t-------------------gtgtgggca
                   Aardvark  gtaagctgaggtatc-g--g------t-------------------gtgtggaca
                  Armadillo  aaaagctgaggtatctg--a------t-------------------gtgtgggca
                    Opossum  agaagctgaggtatctg--g------t-------------------gtttgggca
            Tasmanian devil  ggaggctgaggtatctg--g------t-------------------gttggggca
                    Wallaby  tttagctgaggtatctg--g------t-------------------gtttgagca
     White-throated sparrow  ataaatacacaagtctg--c------aagtc---------------------cct
                     Parrot  ataaatacaaaagtctc--t------gagtccctgagctcagtgtggtgctgcca
         American alligator  -------------tctg--c------tgcgc---------------gtgtgggcg
        Princess of Burundi  =======================================================
               Nile tilapia  =======================================================
                  Tetraodon  =======================================================
                Zebra mbuna  =======================================================
                  Zebrafish  =======================================================
                 Coelacanth  =======================================================
                Spotted gar  =======================================================
        Pundamilia nyererei  =======================================================
      Burton's mouthbreeder  =======================================================
            Green seaturtle  =======================================================
        Collared flycatcher  =======================================================
              X. tropicalis  =======================================================
                 Budgerigar  =======================================================
              Scarlet macaw  =======================================================
                   Platypus  =======================================================
        Medium ground finch  =======================================================
           Peregrine falcon  =======================================================
               Saker falcon  =======================================================
                     Turkey  =======================================================
                    Chicken  =======================================================
                     Lizard  =======================================================
                     Medaka  =======================================================
                Zebra finch  =======================================================
             Painted turtle  =======================================================
         Tibetan ground jay  =======================================================
                Rock pigeon  =======================================================
               Mallard duck  =======================================================

Inserts between block 17 and 18 in window
  D White-throated sparrow 22bp
  D                 Parrot 41bp
B D     American alligator 9bp

Alignment block 18 of 1514 in window, 98248895 - 98248909, 15 bps 
B D                   Human  gcagctaggagt---gtg
B D                   Chimp  gcagctaggagt---gtg
B D                 Gorilla  gcagctaggagt---gtg
B D               Orangutan  gcagctaggagt---gtg
B D                  Gibbon  gcagctaggagt---gtg
B D                  Rhesus  gtagctaggagt---gtg
B D     Crab-eating macaque  gtagctaggagt---gtg
B D                  Baboon  gtagctaggagc---gtg
B D            Green monkey  gcagctaggagt---gtg
B D                Marmoset  gcaggtaggagt---gcg
B D         Squirrel monkey  gcaggtaggagt---gcg
B D                Bushbaby  gcagctggtaac---gtg
         Chinese tree shrew  gcagctgggagt---gt-
B D                Squirrel  gcagttgggagt---gtg
     Lesser Egyptian jerboa  g-agctgggagt---atg
               Prairie vole  g-agctgggact---gtg
B D         Chinese hamster  g-agctgggagt---gtg
             Golden hamster  g-agctgggaat---gtg
B D                   Mouse  g-agctggga-----gtg
B D                     Rat  g-agctgggggc---gtg
B D          Naked mole-rat  gcagctgggagt---gtg
B D              Guinea pig  gcagctgg----------
                 Chinchilla  gcagctgggagt---gtg
           Brush-tailed rat  gcagctgggagt---gtg
B D                  Rabbit  gcag-taggagt---gtg
B D                    Pika  gcagctaggagt---gtg
B D                     Pig  gcagctgggagt---gtg
B D                  Alpaca  gcagctaggagt---gcg
             Bactrian camel  gcagctaggagt---gtg
B D                 Dolphin  gcagctgggggt---gcg
               Killer whale  gcagctgggggt---gcg
           Tibetan antelope  gcagctgggagc---gtg
B D                     Cow  gcaactgggagc---gtg
B D                   Sheep  gcagctgggagc---gtg
              Domestic goat  gcagctgggagc---gtg
B D                   Horse  gcagctgggagt---gtg
B D        White rhinoceros  gcagctgggggt---gtg
B D                     Cat  gcagccggaagt---gtg
B D                     Dog  gcagctggaagt---ttg
B D                 Ferret   gcagccggaagt---gtg
B D                   Panda  gcagctggaagt---gtg
             Pacific walrus  gcagctggaagt---gtg
               Weddell seal  gcagctggaagt---gtg
           Black flying-fox  gcagctgggagt---gtg
B D                 Megabat  gcagctgggagt---gtg
              Big brown bat  gcagctgggaat---gtg
       David's myotis (bat)  gcagctggcaat---gtg
B D                Microbat  gcagctggcaat---gtg
B D                Hedgehog  gcagctgggaga---gtg
B D                   Shrew  gccgccgggcgc---ggg
            Star-nosed mole  gcagctgggagt---gcg
B D                Elephant  gcagctgggagt---gtg
        Cape elephant shrew  gcaact--gagt---ata
B D                 Manatee  gcagctgggagt---gtg
           Cape golden mole  ---actgggagt---gtg
B D                  Tenrec  gcaactgggagt---gtg
                   Aardvark  gcagctgggagt---gca
B D               Armadillo  gcagctgggaac---gca
B D                 Opossum  gc--gtggaggc---ttc
B D         Tasmanian devil  gcaggtgaaggc---ttg
B D                 Wallaby  tcaggtggtggacggtta
  D  White-throated sparrow  ggcacaggggcc---gg-
B D             Zebra finch  gctgctgggacc---ccg
         Tibetan ground jay  gctgctgggacc---ctg
  D                  Parrot  accgctgggagc---gtg
B D      American alligator  gcggctctgcgc---tg-
       Princess of Burundi  ==================
B D            Nile tilapia  ==================
B D               Tetraodon  ==================
               Zebra mbuna  ==================
B D               Zebrafish  ==================
B D              Coelacanth  ==================
               Spotted gar  ==================
       Pundamilia nyererei  ==================
     Burton's mouthbreeder  ==================
  D         Green seaturtle  ==================
  D     Collared flycatcher  ==================
B D           X. tropicalis  ==================
B D              Budgerigar  ==================
  D           Scarlet macaw  ==================
B D                Platypus  ==================
B D     Medium ground finch  ==================
  D        Peregrine falcon  ==================
  D            Saker falcon  ==================
B D                  Turkey  ==================
B D                 Chicken  ==================
B D                  Lizard  ==================
B D                  Medaka  ==================
  D          Painted turtle  ==================
  D             Rock pigeon  ==================
  D            Mallard duck  ==================

Inserts between block 18 and 19 in window
  D White-throated sparrow 34bp
B D            Zebra finch 1bp
        Tibetan ground jay 1bp
  D                 Parrot 1bp

Alignment block 19 of 1514 in window, 98248910 - 98248915, 6 bps 
B D                   Human  cagtg--a
B D                   Chimp  cagtg--a
B D                 Gorilla  cagtg--a
B D               Orangutan  cagtg--a
B D                  Gibbon  cagtg--a
B D                  Rhesus  cagtg--a
B D     Crab-eating macaque  cagtg--a
B D                  Baboon  cagtg--a
B D            Green monkey  cagtg--a
B D                Marmoset  cagtg--a
B D         Squirrel monkey  cggtg--a
B D                Bushbaby  cagtg--g
         Chinese tree shrew  cagtg--g
B D                Squirrel  cagtg--a
     Lesser Egyptian jerboa  cagta--a
               Prairie vole  cagta--c
B D         Chinese hamster  cagta--a
             Golden hamster  cagta--a
B D                   Mouse  cagta--a
B D                     Rat  caata--a
B D          Naked mole-rat  cagtg--a
B D              Guinea pig  ----t--a
                 Chinchilla  cagtg--a
           Brush-tailed rat  cgctc--a
B D                  Rabbit  cagtg--a
B D                    Pika  caggg--a
B D                     Pig  cggtg--a
B D                  Alpaca  cggtg--a
             Bactrian camel  cggtg--a
B D                 Dolphin  caggg--g
               Killer whale  caggg--g
           Tibetan antelope  tggtg--a
B D                     Cow  tggtg--a
B D                   Sheep  tggtg--a
              Domestic goat  tggtg--a
B D                   Horse  cagtg--a
B D        White rhinoceros  cagtg--a
B D                     Cat  cagtg--a
B D                     Dog  cagtc--g
B D                 Ferret   cagtc--a
B D                   Panda  cagtc--a
             Pacific walrus  cagtc--a
               Weddell seal  cagtc--a
           Black flying-fox  cagtg--a
B D                 Megabat  ccgtg--a
              Big brown bat  cagtg--a
       David's myotis (bat)  cagtg--a
B D                Microbat  cagtg--a
B D                Hedgehog  cagtg--a
B D                   Shrew  ccgtg--c
            Star-nosed mole  cagtg--a
B D                Elephant  --gtg--a
        Cape elephant shrew  --gtg--a
B D                 Manatee  --gtg--a
           Cape golden mole  --gtg--a
B D                  Tenrec  --ggg--a
                   Aardvark  --gtg--a
B D               Armadillo  --gtg--a
B D                 Opossum  tggcc--g
B D         Tasmanian devil  tggcc--g
B D                 Wallaby  tggcc--a
  D  White-throated sparrow  cagtggca
B D     Medium ground finch  caatggca
B D             Zebra finch  cgatgcca
         Tibetan ground jay  caatgcca
  D                  Parrot  caatgcca
B D      American alligator  cagtg--g
       Princess of Burundi  ========
B D            Nile tilapia  ========
B D               Tetraodon  ========
               Zebra mbuna  ========
B D               Zebrafish  ========
B D              Coelacanth  ========
               Spotted gar  ========
       Pundamilia nyererei  ========
     Burton's mouthbreeder  ========
  D         Green seaturtle  ========
  D     Collared flycatcher  ========
B D           X. tropicalis  ========
B D              Budgerigar  ========
  D           Scarlet macaw  ========
B D                Platypus  ========
  D        Peregrine falcon  ========
  D            Saker falcon  ========
B D                  Turkey  ========
B D                 Chicken  ========
B D                  Lizard  ========
B D                  Medaka  ========
  D          Painted turtle  ========
  D             Rock pigeon  ========
  D            Mallard duck  ========

Alignment block 20 of 1514 in window, 98248916 - 98248967, 52 bps 
B D                   Human  cagcttcagatgaggttgttcctgagacgctgttcc---tgctccagggagagtt
B D                   Chimp  cagcttcagatgaggttgttcctgagacgctgttcc---tgctccagggagagtt
B D                 Gorilla  cagcttcagatgaggttgttcctgagacgctgttcc---tgctccagggagagtt
B D               Orangutan  cagcttcagatgaggttgttcctgagacgctgttcc---tgctccagggagagtt
B D                  Gibbon  cagcttcagatgaggttgttcctgagacgctgttcc---tgctccagggagagtt
B D                  Rhesus  gggcttcagatgaggttgttcctgagacgctgttct---tgctccagggagagtt
B D     Crab-eating macaque  gggcttcagatgaggttgttcctgagacgctgttct---tgctccagggagagtt
B D                  Baboon  gggcttcagatgaggttgttcctgagacgctgttct---tgctccagggagagtt
B D            Green monkey  gggcttcagatgaggttgttcctgagacgctgttct---tgctccagggagagtt
B D                Marmoset  tggcttcagataaggttgttcctgagacgctgttcc---tgctccagggaaagtt
B D         Squirrel monkey  tggcttcagatgaggttgttcctgagacgctgttcc---tgctccagggaaaggt
B D                Bushbaby  tgtcttcagatgaggttgtttctaagacgctgttcc---tgctccagggagtgtt
         Chinese tree shrew  tgctttcagatgaagttgttcctgagacgctgttct---cgctccagggagagct
B D                Squirrel  tgacttcagatgaggttgttcctaagtcgctgttcc---tgttccagggaaagct
     Lesser Egyptian jerboa  tgactttagatgaggttgttcctgagtcgctgttcc---tgctccagggagagct
               Prairie vole  tggcttcagatcaggttgttcctgagtcgctgttcc---tgctccagggagagct
B D         Chinese hamster  tggctttagatcaggttgttcctgagccgctgttcc---tgctccagagagagct
             Golden hamster  tggctttagatcaggttgttcctgagccgctgttcc---tgctccagggagagct
B D                   Mouse  tggcttcagatcaagttgttcctgagtcgctgttcc---tgctccagggagagct
B D                     Rat  cggctttagatcaagttgttcctgagtcgctgttcc---tgctccagggagagct
B D          Naked mole-rat  tggcttcagataaggttgttcctgagtcgt---tgc---tgctccagggagagtt
B D              Guinea pig  tggcttcagataaggttattcctgagtcgc---tcc---tgctccaggaaaaatt
                 Chinchilla  tggcttcagataaaattgttcctgagtcgt---tcc---tgctccagggagagtt
           Brush-tailed rat  tggcttcagataaggttgttcctgagtcgc---tcc---tgctccaggaagagtt
B D                  Rabbit  tggcttcagatgaggttgttcctgagtctctgttcc---tgttccagggagagct
B D                    Pika  tggcttcagatgaggttgttcctgagtctctgttcc---tgctccagggagagct
B D                     Pig  tagcttcagatgaggttgttcctgagacgctgttct---tgctccagggagagct
B D                  Alpaca  cggcttcagatgaggttgttcctgagacgctgctcc---tgctccagggagagct
             Bactrian camel  cggcttcagatgaggttgttcctgagacgctgctcc---tgctccagggagagct
B D                 Dolphin  tgccttcagatgaggttgttcctgagacgctgctcc---tgttccggggagtgct
               Killer whale  tgccttcagatgaggttgttcctgagacgctgctcc---tgttccggggagtgct
           Tibetan antelope  cggcttcagatgaggttgttcctgagacgctgctcc---tgctcctgggacagct
B D                     Cow  cggcttcagatgaggttgttcctgagacgctgctcc---tgctcttgggacagct
B D                   Sheep  cggcttcagatgaggttgttcctgagacgctgctcc---tgctcctgggacagct
              Domestic goat  cggcttcagatgaggttgttcctgagacgctgctcc---tgctcctgggacagct
B D                   Horse  tggcttcagatgaggttgttcctgaggcgctgctcc---tgctccaggaagagct
B D        White rhinoceros  tggcttcagatgaggttgttcctgagacgctgctcc---tgctccagggagagct
B D                     Cat  tggcctcaaatgaggttgttcctgagacgctgctcc---tgctccagggagagct
B D                     Dog  tggcttcagatgagattgttcctgagacgctgctcc---tgctccagggagagct
B D                 Ferret   tggcttcagatgaagttgttcctgagacgc---tcc---tgctccagggagagct
B D                   Panda  tggcttcagatgaggttgttcctgagacgctgctcc---tgctccagggagagct
             Pacific walrus  tggcttcagatgaggttgttcctgagacgctgttcc---tgctccagggagagct
               Weddell seal  tggcttcagatgaggttgttcctgagacgctgctcc---tgctccagggagagct
           Black flying-fox  tggcttcagatgaggttgttcctgagacgctgctcc---tgctccagggagagct
B D                 Megabat  tggcttcagatgaggttgttcctgagacgctgctcc---tgctccagggagagct
              Big brown bat  tggcttcagatgaggttgttcctcagacgctgctcc---tgctccagggagagct
       David's myotis (bat)  tggcttcagatgaggttgttcctcagacgctgctcc---tgctccagggagagct
B D                Microbat  tggcttcagatgaggttgttcctcagacgctgctcc---tgctccagggagagct
B D                Hedgehog  aggcttcagatgaggttgtttctgagacgctgctcc---tgctccaaggagagct
B D                   Shrew  tggcctcagatgaggttgttccggagccgctgctct---tgctccagagccagct
            Star-nosed mole  tggcttcagatgaggttgttcctgagacgctgttcc---tgttccagggagagct
B D                Elephant  tggcttcagatgaggttgttcctgagacgctgctcc---tgctccagggagagct
        Cape elephant shrew  tggcttcagatgaggttgttccgaagacgctgctcc---tgctccagggagagct
B D                 Manatee  tggcttcagatgaggttgttcctgagacgctgctcc---tgctccagggagagct
           Cape golden mole  tgacttcagatgaagttgttcctgagacgttgctcc---tgctccagggagagtt
B D                  Tenrec  cggctttagatgaggttgttcctgagccgctgtgcc---tgctccagggagagct
                   Aardvark  cggcttcagatgaggttgctcctgagacgctgctcc---tgctccagggacagct
B D               Armadillo  tggattcagataaggttgttcctgagacgtt---cc---tgctccagggagagct
B D                 Opossum  ggacctcagatgaggttgttcatgagcctctgctgc---tgttcccaggagagct
B D         Tasmanian devil  ggacctcagatgaggttgttgaggagtcgctgctgc---tgttcc---aagactt
B D                 Wallaby  ggacctcagatgaggttgttcatgagtcgctgctgctgttgttca---acaattt
  D  White-throated sparrow  ggggttcacacgaggttgttggccaggcgctcccgt---ctctccatgtcgctca
B D     Medium ground finch  ggggttcacacgaggttgttggccaggcgctcccgt---ctctccatgtcgctca
B D             Zebra finch  ggggttcacacgaggttgttggccaggcgctcccgt---ctctccagatcgctca
         Tibetan ground jay  agggttcacacgaggttgttggccaggcgctcccgt---ctctccagatcactca
  D                  Parrot  tggggttacacgaggttgttggccaggcgctcccgt---cgctccaggtcattca
B D      American alligator  gggcttcacaccaggttagtggccaggcgctgctgc---tgctccatgacgctga
B D               Zebrafish  cagtctcagatgaagttattgctgatctgacgctga---tgttcaaataaatcct
       Princess of Burundi  =======================================================
B D            Nile tilapia  =======================================================
B D               Tetraodon  =======================================================
               Zebra mbuna  =======================================================
B D              Coelacanth  =======================================================
               Spotted gar  =======================================================
       Pundamilia nyererei  =======================================================
     Burton's mouthbreeder  =======================================================
  D         Green seaturtle  =======================================================
  D     Collared flycatcher  =======================================================
B D           X. tropicalis  =======================================================
B D              Budgerigar  =======================================================
  D           Scarlet macaw  =======================================================
B D                Platypus  =======================================================
  D        Peregrine falcon  =======================================================
  D            Saker falcon  =======================================================
B D                  Turkey  =======================================================
B D                 Chicken  =======================================================
B D                  Lizard  =======================================================
B D                  Medaka  =======================================================
  D          Painted turtle  =======================================================
  D             Rock pigeon  =======================================================
  D            Mallard duck  =======================================================

Inserts between block 20 and 21 in window
B D              Zebrafish 6bp

Alignment block 21 of 1514 in window, 98248968 - 98248997, 30 bps 
B D                   Human  ctgcattggctgggtatgaattcc----------ctg-tgg
B D                   Chimp  ctgcattggctgggtatgaattcc----------ctg-tgg
B D                 Gorilla  ctgcattggctgggtatgaattcc----------ctg-tgg
B D               Orangutan  ctgcattggctgggtatgaattcc----------ctg-tgg
B D                  Gibbon  ctgcattggctgggtatgaattcc----------ctg-tgg
B D                  Rhesus  ctgcactggctgggtatgaattcc----------ctg-tgg
B D     Crab-eating macaque  ctgcactggctgggtatgaattcc----------ctg-tgg
B D                  Baboon  ctgcattggctgggtatgaattcc----------ctg-tgg
B D            Green monkey  ctgccttggctgggtatgaattcc----------ctg-tgg
B D                Marmoset  ctgcattggctgggtatgaattcc----------ctg-tag
B D         Squirrel monkey  ccgcattggctgggtatgaattcc----------ctg-tag
B D                Bushbaby  ctgtatcggctgggtacgaatctc----------cta-tgg
         Chinese tree shrew  ccgcactggctggataggaatcct----------ctg-cag
B D                Squirrel  ctgcattggctctgtatgaatctc----------ctg-tgg
     Lesser Egyptian jerboa  ctgtattggctcggtatgcatctc----------ctg-tgg
               Prairie vole  ctgcattgggtcgggaggaatctc----------ctg-ggg
B D         Chinese hamster  ccgcattgggtctgtaggagtctc----------ctg-tgg
             Golden hamster  ccgcattgggtctgtaggaatctc----------ctg-cag
B D                   Mouse  ctgcattggctcggtaggaatctc----------ctg-tgg
B D                     Rat  ctgcattgggtcggtagggatctc----------ctg-tgg
B D          Naked mole-rat  ctgcattggctctgtatgaatctc----------ctg-tga
B D              Guinea pig  ctgcattggctcggtacgaatctc----------ctg-ggg
                 Chinchilla  ctgcattggctcggtatgaatctc----------ctg-cgg
           Brush-tailed rat  ctgcattggctcggtatgaatctc----------ctg-tgg
B D                  Rabbit  ctgcattggctcggtatgaatctc----------ctg-tgg
B D                    Pika  ctgcattggctcggtatgaatctc----------ctg-tgg
B D                     Pig  ctgcattggcccggtacgaatcct----------ctgttgg
B D                  Alpaca  ctgagttagcccggtacgaatccc----------ctg-tgg
             Bactrian camel  ctgagttagcccggtacgaatccc----------ctg-tgg
B D                 Dolphin  ctgtgttagctcggtgtgcgtccc----------ctg-cgg
               Killer whale  ctgtgttagctcggtgtgcgtccc----------ctg-cgg
           Tibetan antelope  ctgtgttagctcggtatgagtccc----------ctg-tgg
B D                     Cow  ctgtgttagctcggtatgagtccc----------ctg-tgg
B D                   Sheep  ctgtgttagctcggtatgagtccc----------ctg-tgg
              Domestic goat  ctgtgttagctcggtatgagtccc----------ctg-tgg
B D                   Horse  ctgcattggctcggtatgaatctc----------ctg-tgg
B D        White rhinoceros  ctgcattggctcggtatgaatccc----------ctg-tgg
B D                     Cat  ctgcattagctcggtaagaatctc----------ctg-tgg
B D                     Dog  cttcattagctcggtaggaatccc----------ctg-tgg
B D                 Ferret   ctgaattagctcggtaggaatccc----------ctg-tga
B D                   Panda  ctgcattagctcggtaggaatccc----------ctg-tgg
             Pacific walrus  ctgcattggcacggtaggaatccc----------ctg-tgg
               Weddell seal  ctgcattggcgcggtaggaatccc----------ctg-tgg
           Black flying-fox  ctgcattggctcgatatgaatccc----------ctg-tgg
B D                 Megabat  ctgcattggctcgatatgaatccc----------ctg-tgg
              Big brown bat  ctgcattggctcgatatgaatccc----------ctg-tgg
       David's myotis (bat)  ctgcattggctcggtatgaatctc----------ctg-tgg
B D                Microbat  ctgcattggctcggtatgaatccc----------ctg-tgg
B D                Hedgehog  ctgtgctggctcggtatgaatccc----------ctg-tga
B D                   Shrew  cggtgttgacccggaaggcatccc----------ctg-tgg
            Star-nosed mole  ctgtgctcgcccggtatgaatccc----------ctg-tgg
B D                Elephant  cagcattggcttggtatgaatccc----------ctg-tgg
        Cape elephant shrew  ccgcattggctcggtatgaatccc----------ctg-tgg
B D                 Manatee  cggcattggctcggtatgaatccc----------ctg-tgg
           Cape golden mole  ctgcattggctcgggataaatccc----------ctg-agg
B D                  Tenrec  ctgtgttggctcgatatgaatccc----------ctg-tag
                   Aardvark  ctgcgttggcttgatatgaatccc----------ctg-tgg
B D               Armadillo  cggcattggctcggtatgaatccc----------ctt-tgg
B D                 Opossum  ctgtgtgggctccgtaggcgtcac----------cta-gag
B D         Tasmanian devil  cggtattggctccataagcgtcac----------cta-gag
B D                 Wallaby  ctgtgttggctccataggcatcgc----------ctg-tag
  D  White-throated sparrow  ctacgtcggcaccgtaggcatcac----------ctg-ggg
B D     Medium ground finch  cgacgtcggcaccgtaggcatcac----------ctg-ggg
B D             Zebra finch  ccacgtcagcaccgtaggcatcac----------ctg-ggg
         Tibetan ground jay  ccacgtcggcaccgtaggcatcac----------ctg-ggg
  D                  Parrot  ctacatcagcaccgtaggcatcac----------ctg-gga
B D      American alligator  gcacatcagccccgtgggcatcgc----------ctg-gag
B D             Stickleback  ------ctgcactgttcgctcggtgtacctgtaaccg-tgg
B D               Zebrafish  ------cagcgctgtaggcatcgc----------ctg-tga
       Princess of Burundi  =========================================
B D            Nile tilapia  =========================================
B D               Tetraodon  =========================================
               Zebra mbuna  =========================================
B D              Coelacanth  =========================================
               Spotted gar  =========================================
       Pundamilia nyererei  =========================================
     Burton's mouthbreeder  =========================================
  D         Green seaturtle  =========================================
  D     Collared flycatcher  =========================================
B D           X. tropicalis  =========================================
B D              Budgerigar  =========================================
  D           Scarlet macaw  =========================================
B D                Platypus  =========================================
  D        Peregrine falcon  =========================================
  D            Saker falcon  =========================================
B D                  Turkey  =========================================
B D                 Chicken  =========================================
B D                  Lizard  =========================================
B D                  Medaka  =========================================
  D          Painted turtle  =========================================
  D             Rock pigeon  =========================================
  D            Mallard duck  =========================================

Inserts between block 21 and 22 in window
  D White-throated sparrow 36bp
B D    Medium ground finch 26bp
B D            Zebra finch 2039bp
        Tibetan ground jay 113bp
  D                 Parrot 19bp
B D     American alligator 19bp

Alignment block 22 of 1514 in window, 98248998 - 98249038, 41 bps 
B D                   Human  -------gccaaag--------gaaaacagg--taagtagccaa-cc-----tt-tc--cagtctca---
B D                   Chimp  -------gccaaag--------gaaaacagg--taagtagccaa-cc-----tt-accacagtctca---
B D                 Gorilla  -------gccaaag--------gaaaacagg--taagtagccaa-cc-----tt-accacagtcaca---
B D               Orangutan  -------gccaaag--------gaaaacagg--taagtagccaa-cc-----tt-accacagtctca---
B D                  Gibbon  -------gccaaag--------gaaaaccgg--taagtagccaa-cc-----ttaaccacagtctca---
B D                  Rhesus  -------gccaaag--------gaaaacagg--taagcagccaa-cc-----tt-accacagtctca---
B D     Crab-eating macaque  -------gccaaag--------gaaaacagg--taagcagccaa-cc-----tt-accacagtctca---
B D                  Baboon  -------gccaaag--------gaaaacagg--taagcagccaa-cc-----tt-accacagtctca---
B D            Green monkey  -------gccaaag--------gaaaacagg--taagcagccaa-cc-----tt-accacagtctca---
B D                Marmoset  -------gccaaag--------gaaagtagg--taaatagccaa-cc-----tt-accacagtctca---
B D         Squirrel monkey  -------gccaaag--------gaaagcagg--taaatagccag-tg-----tt-accacaatctca---
B D                Bushbaby  -------gtcaaag--------gaaaatagg--taagtag-caa-cc-----ct-gccacagtctca---
         Chinese tree shrew  -------gccagag--------gaaa-cagg--taagtagccaa-cc-----ct-gccactgtctca---
B D                Squirrel  -------gcaaaag--------gaaaagagc--taagtagccaa-cc-----tt-gccgcagtctc----
     Lesser Egyptian jerboa  -------gtcaaag--------gaaaatagc--taagtc-tcga-cc-----ct-gccacagcctct---
               Prairie vole  -------gtcaaag--------gaaaatagc--taagtagccaa-ac-----cc-acagcagcccc----
B D         Chinese hamster  -------gccaaag--------gaaaatagc--taagtagccaa-ac-----cc-acctcagcccc----
             Golden hamster  -------gccaaag--------gaaaacaag--taagtagccaa-ac-----cc-accacagcccc----
B D                   Mouse  -------gccaaag--------cagaagagt--tgagtggacaa-ag-----cc-accacagcgcc----
B D                     Rat  -------gccaaag--------caaaatcgt--taagtagacga-ac-----cc-accacagcccc----
B D          Naked mole-rat  -------gccaaac--------gaaaatagt--taagtagccaa-cc-----ct-accacagtctca---
B D              Guinea pig  -------gccaaaa--------gaaaatagc--taggtatccaa-cc-----cc-accacagtctca---
                 Chinchilla  -------gccaaag--------gaagacaac--taggtatccaa-ct-----tc-ac--cagtctca---
           Brush-tailed rat  -------gccaaag--------gaaagcagg--tgggtatccaa-ct-----cc-accacagtctcc---
B D                  Rabbit  -------gccaaag--------gaaaacagc--tgaatagccaa-cc-----ct-tcc------------
B D                    Pika  -------gccaaag--------aaaaacagc--tgagtgaccag-ct-----tt-gcc------------
B D                     Pig  -------accaaag--------gaaaagagg--taagtggccag-cc-----tg-accagagtctca---
B D                  Alpaca  -------agcaaag--------gagaacagg--taagaggccaa-cc-----gg-acc--aatctca---
             Bactrian camel  -------agcaaag--------gaggacagg--taagaggccaa-cc-----gg-acc--agtctca---
B D                 Dolphin  -------accagag--------gagggcagg--taagtcgtcga-cc-----tg-accggagtctca---
               Killer whale  -------accagag--------gagggcagg--taagtcgtcga-cc-----tg-atcggagtctca---
           Tibetan antelope  -------accaaag--------gacgacagg--taagtagctga-cc-----tc-accagagtccca---
B D                     Cow  -------accgaag--------gacgacagg--taagtagctga-cc-----tc-accagagtccca---
B D                   Sheep  -------accaaag--------gacgacagg--taagtagctga-cc-----tc-accagagtccca---
              Domestic goat  -------accgaag--------gacgacagg--taagtagctga-cc-----tc-accagagtccca---
B D                   Horse  -------gccaaag--------ggaaacaag--taagtagccaa-cc-----cc-accatggtctca---
B D        White rhinoceros  -------gtcaaag--------gaaaacagg--taagta---ca-cc-----ct-accatggtctca---
B D                     Cat  -------accaaag--------aagaacaag--taagtagccaa-cc-----ct-accgtgctctca---
B D                     Dog  -------accaaag--------gagaatgga--taagtagccaa-cc-----ct-gccatgctctca---
B D                 Ferret   -------accaaag--------gagaactgg--taagaagccag-cc-----tt-cccatgctctta---
B D                   Panda  -------accaaag--------gacaacggg--tgagtagccaa-cc-----ct-accgtgctctca---
             Pacific walrus  -------accaaag--------gagaatggg--taagtagccaa-cc-----ct-accatgctctca---
               Weddell seal  -------atcaaag--------gagaacggg--taagtagccaa-cc-----ct-accatgctctca---
           Black flying-fox  -------gccaaag--------gaaaacagg--taagtagccaa-cc-----ct-atcacaggttca---
B D                 Megabat  -------gccaaag--------gaaaacagg--taagtagccaa-cc-----ct-atcgcaggctca---
              Big brown bat  -------gccaaag--------gaaaacagg--taagtgaccaa-cc-----c--accacag--tca---
       David's myotis (bat)  -------gccaaag--------gaaaacagg--taagtgaccaa-cc-----c--accacagtctca---
B D                Microbat  -------gccaaag--------gaaaatagg--taagtgaccaa-cc-----c--accacagtctca---
B D                Hedgehog  -------gccaaag--------gagagcagc--taagtatccag-cc-----ct-gccat--tctca---
B D                   Shrew  -------gccagac--------agaaacagg--tcagtaggcag-cc-----c--accaccgtcttg---
            Star-nosed mole  -------gccaaga--------gaagacagc--taagt--gcag-cc-----t--gccaccctctca---
B D                Elephant  -------gccaaag--------gaacacagga-tcagaagccaa-cc-----ct-gccacag--taa---
        Cape elephant shrew  -------gccgacg--------ggaaacagag-tcagg----aa-cc-----ct-gccgcag--------
B D                 Manatee  -------gccaaag--------gaacacagag-ttagaagccaa-cc-----ct-cctacactctca---
           Cape golden mole  -------gccaaag--------gaa-aggcga-tcagaagccagttt-----ct----------------
B D                  Tenrec  -------gccgaag--------gaagacaggg-tcagaagccgg-cc-----ct----------------
                   Aardvark  -------gccaaag--------gaaaacaggc-tcagaagc-ag-cc-----ct---gtcagtctca---
B D               Armadillo  -------gccaaag--------gaaaacaggg-taagtaaccaa-ac-----ct-gccacagtctga---
B D                 Opossum  -------gat--gg--------gacagtcgg--gaggaggctca-gc-----cg-gggtctctc-ca---
B D         Tasmanian devil  -------ag---gg--------gacg--------------------------ca-gttcctgttaca---
B D                 Wallaby  -------tgt--gg--------gacagtcag--gatgagg--ag-gcagcctca-gcttctgtcaca---
B D     Medium ground finch  -------catgtgg--------gggcacagg--aaacctgtggc-ac-----cc-ccaac---ctca---
  D                  Parrot  --------atggtg--------ggggacatg--ggccctgcagt-ac-----cc-ccagc---ccca---
B D      American alligator  -------agtgcag--------ggaggt-gg--catcgggcagt-cc-----ct-cccgcgctccca---
B D             Stickleback  gcaacaagctgaat--------aaacatataactgacctgcaaa-tc-----gt--------tcacgtct
B D               Zebrafish  gagaagag-tgaatcagagagggaacacgta--tgtgctgtatg-tt-----gt-gcttcagtcatggca
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================
B D              Coelacanth  ======================================================================
               Spotted gar  ======================================================================
       Pundamilia nyererei  ======================================================================
     Burton's mouthbreeder  ======================================================================
  D         Green seaturtle  ======================================================================
  D     Collared flycatcher  ======================================================================
B D           X. tropicalis  ======================================================================
B D              Budgerigar  ======================================================================
  D           Scarlet macaw  ======================================================================
B D                Platypus  ======================================================================
  D  White-throated sparrow  ======================================================================
  D        Peregrine falcon  ======================================================================
  D            Saker falcon  ======================================================================
B D                  Turkey  ======================================================================
B D                 Chicken  ======================================================================
B D                  Lizard  ======================================================================
B D                  Medaka  ======================================================================
B D             Zebra finch  ======================================================================
  D          Painted turtle  ======================================================================
        Tibetan ground jay  ======================================================================
  D             Rock pigeon  ======================================================================
  D            Mallard duck  ======================================================================

                      Human  --
                      Chimp  --
                    Gorilla  --
                  Orangutan  --
                     Gibbon  --
                     Rhesus  --
        Crab-eating macaque  --
                     Baboon  --
               Green monkey  --
                   Marmoset  --
            Squirrel monkey  --
                   Bushbaby  --
         Chinese tree shrew  --
                   Squirrel  --
     Lesser Egyptian jerboa  --
               Prairie vole  --
            Chinese hamster  --
             Golden hamster  --
                      Mouse  --
                        Rat  --
             Naked mole-rat  --
                 Guinea pig  --
                 Chinchilla  --
           Brush-tailed rat  --
                     Rabbit  --
                       Pika  --
                        Pig  --
                     Alpaca  --
             Bactrian camel  --
                    Dolphin  --
               Killer whale  --
           Tibetan antelope  --
                        Cow  --
                      Sheep  --
              Domestic goat  --
                      Horse  --
           White rhinoceros  --
                        Cat  --
                        Dog  --
                    Ferret   --
                      Panda  --
             Pacific walrus  --
               Weddell seal  --
           Black flying-fox  --
                    Megabat  --
              Big brown bat  --
       David's myotis (bat)  --
                   Microbat  --
                   Hedgehog  --
                      Shrew  --
            Star-nosed mole  --
                   Elephant  --
        Cape elephant shrew  --
                    Manatee  --
           Cape golden mole  --
                     Tenrec  --
                   Aardvark  --
                  Armadillo  --
                    Opossum  --
            Tasmanian devil  --
                    Wallaby  --
        Medium ground finch  --
                     Parrot  --
         American alligator  --
                Stickleback  cc
                  Zebrafish  at
        Princess of Burundi  ==
               Nile tilapia  ==
                  Tetraodon  ==
                Zebra mbuna  ==
                 Coelacanth  ==
                Spotted gar  ==
        Pundamilia nyererei  ==
      Burton's mouthbreeder  ==
            Green seaturtle  ==
        Collared flycatcher  ==
              X. tropicalis  ==
                 Budgerigar  ==
              Scarlet macaw  ==
                   Platypus  ==
     White-throated sparrow  ==
           Peregrine falcon  ==
               Saker falcon  ==
                     Turkey  ==
                    Chicken  ==
                     Lizard  ==
                     Medaka  ==
                Zebra finch  ==
             Painted turtle  ==
         Tibetan ground jay  ==
                Rock pigeon  ==
               Mallard duck  ==

Inserts between block 22 and 23 in window
B D              Zebrafish 32310bp

Alignment block 23 of 1514 in window, 98249039 - 98249047, 9 bps 
B D                   Human  tcc-cttccc
B D                   Chimp  tcc-cttccc
B D                 Gorilla  tcc-cttccc
B D               Orangutan  tcc-cttccc
B D                  Gibbon  tcc-cttccc
B D                  Rhesus  tcc-cttccc
B D     Crab-eating macaque  tcc-cttccc
B D                  Baboon  tcc-cttccc
B D            Green monkey  tcc-cttccc
B D                Marmoset  tcc-cttccc
B D         Squirrel monkey  tcc-cttccc
B D                Bushbaby  tcc-tttccc
         Chinese tree shrew  tcc-cttccc
B D                Squirrel  -tc-attccc
     Lesser Egyptian jerboa  tct-cttccc
B D          Naked mole-rat  ttc-cttccc
B D              Guinea pig  ttc-cttccc
                 Chinchilla  ttc-ctcccc
           Brush-tailed rat  ctc-ctcctc
B D                  Rabbit  ---------c
B D                    Pika  ---------c
B D                     Pig  tcc-ctttcc
B D                  Alpaca  t-c-cttccc
             Bactrian camel  t-c-cttccc
B D                 Dolphin  tcc-cctccc
               Killer whale  tcc-cctccc
           Tibetan antelope  tcc-cctcac
B D                     Cow  tcc-cctcac
B D                   Sheep  tcc-cctcac
              Domestic goat  tcc-cctcac
B D                   Horse  tcc-cttccc
B D        White rhinoceros  tcc-cttccc
B D                     Cat  tcc-cctccc
B D                     Dog  tcc-cctccc
B D                 Ferret   gcc-cct-cc
B D                   Panda  tcc-cctccc
             Pacific walrus  tcc-cctccc
               Weddell seal  tcc-cctccc
           Black flying-fox  tcc-tttcct
B D                 Megabat  tcc-tttcct
              Big brown bat  tcc-tttccc
       David's myotis (bat)  tcc-tttccc
B D                Microbat  tcc-ttcccc
B D                Hedgehog  tccatctccc
B D                   Shrew  cccgcttcct
            Star-nosed mole  tcc-cttccc
B D                Elephant  tcc-cttccc
        Cape elephant shrew  gct-catccc
B D                 Manatee  ttc-cttccc
           Cape golden mole  tcc-tttccc
B D                  Tenrec  gca-tctgtc
                   Aardvark  tcc-ctcctc
B D               Armadillo  tct-ctttcc
B D                 Opossum  tct-ctttcc
B D         Tasmanian devil  tct-ctttcc
B D                 Wallaby  tct-ctttcc
B D     Medium ground finch  tca-cttccc
  D                  Parrot  tca-cttccc
B D      American alligator  gct-gtgccc
B D             Stickleback  tgt-tttcat
B D                   Mouse  ----------
B D                     Rat  ----------
              Prairie vole  ----------
B D         Chinese hamster  ----------
            Golden hamster  ----------
       Princess of Burundi  ==========
B D            Nile tilapia  ==========
B D               Tetraodon  ==========
               Zebra mbuna  ==========
B D               Zebrafish  ==========
B D              Coelacanth  ==========
               Spotted gar  ==========
       Pundamilia nyererei  ==========
     Burton's mouthbreeder  ==========
  D         Green seaturtle  ==========
  D     Collared flycatcher  ==========
B D           X. tropicalis  ==========
B D              Budgerigar  ==========
  D           Scarlet macaw  ==========
B D                Platypus  ==========
  D  White-throated sparrow  ==========
  D        Peregrine falcon  ==========
  D            Saker falcon  ==========
B D                  Turkey  ==========
B D                 Chicken  ==========
B D                  Lizard  ==========
B D                  Medaka  ==========
B D             Zebra finch  ==========
  D          Painted turtle  ==========
        Tibetan ground jay  ==========
  D             Rock pigeon  ==========
  D            Mallard duck  ==========

Inserts between block 23 and 24 in window
B D                Opossum 9bp
B D        Tasmanian devil 21bp
B D                Wallaby 1070bp
  D                 Parrot 35bp

Alignment block 24 of 1514 in window, 98249048 - 98249077, 30 bps 
B D                   Human  -tg-acaact----t-----------------------------------------------------ac
B D                   Chimp  -tg-acaact----t-----------------------------------------------------ac
B D                 Gorilla  -tg-acaact----t-----------------------------------------------------ac
B D               Orangutan  -tg-acaact----t-----------------------------------------------------ac
B D                  Gibbon  -tg-acaact----t-----------------------------------------------------ac
B D                  Rhesus  -tg-acaact----t-----------------------------------------------------at
B D     Crab-eating macaque  -tg-acaact----t-----------------------------------------------------ac
B D                  Baboon  -tg-acaact----t-----------------------------------------------------ac
B D            Green monkey  -tg-acaact----t-----------------------------------------------------ac
B D                Marmoset  -tg-acaact----t---------------------------------------------c-------ac
B D         Squirrel monkey  -ta-acaact----t---------------------------------------------c-------ac
B D                Bushbaby  -tg-acaact----t---------------------------------------------c-------ac
         Chinese tree shrew  -tc-ccgctt----c-----------------------------------------------------ac
B D                Squirrel  -tg-acaacc----t---------------------------------------------c-------ac
     Lesser Egyptian jerboa  -tg-acaact----t---------------------------------------------c-------ac
B D          Naked mole-rat  -tg-aggact----t---------------------------------------------c-------ac
B D              Guinea pig  -tg-acagct----t---------------------------------------------c-------ac
                 Chinchilla  -tg-acaact----t---------------------------------------------c-------ac
           Brush-tailed rat  -tg-acaact----t---------------------------------------------t-------ac
B D                  Rabbit  -tg-acaagt----t---------------------------------------------t-------ac
B D                    Pika  -tg--taggt-----------------------------------------------------------c
B D                     Pig  -tg-acaact----t---------------------------------------------cacaa---ac
B D                  Alpaca  -tg-acaact----t---------------------------------------------cacaa-acac
             Bactrian camel  -tg-acaact----t---------------------------------------------cacaa-acac
B D                 Dolphin  -tg-acaacg----t---------------------------------------------cacaa---ac
               Killer whale  -tg-acaacg----t---------------------------------------------cacaa---ac
           Tibetan antelope  -tg-acaact----t---------------------------------------------cacaa---ac
B D                     Cow  -tg-acaact----t---------------------------------------------cacaa---ac
B D                   Sheep  -tg-acaact----t---------------------------------------------cacaa---ac
              Domestic goat  -tg-acaact----t---------------------------------------------cacaa---ac
B D                   Horse  -ag-acaact----t---------------------------------------------cacaa-acac
B D        White rhinoceros  -tg-acaact----t---------------------------------------------cacaa-acac
B D                     Cat  -ta-acagct----tcacttactccacacacacacacacacacacacacacacacacacacacac-acac
B D                     Dog  -tg-acagct-----------------------------------------------gcacgcac-acac
B D                 Ferret   -tg-acaatt----tctctctctct-----------------ctctctctcttacacacacacac-atac
B D                   Panda  -tg-acaact----tcacgc--------------------------------cgcacacacacac-acac
             Pacific walrus  -tg-acagtt----tctctctctct-----------------ctctctctcacacacacactctc-tctc
               Weddell seal  -tg-acagtttctctctctctctct-----------------ctctctctctctcacacacacac-acac
           Black flying-fox  -tg-acaatg----t---------------------------------------------cacaa-----
B D                 Megabat  -tg-acaacg----t---------------------------------------------cacaa-----
              Big brown bat  -tg-acagct----t---------------------------------------------cacaa-----
       David's myotis (bat)  -tg-acagct----t---------------------------------------------cccaa---ac
B D                Microbat  -tg-acagct----t---------------------------------------------cacaa---ac
B D                Hedgehog  -tc-acaact----t---------------------------------------------cacaa-----
B D                   Shrew  -tc-gcaact----c---------------------------------------------cacgg-gc-c
            Star-nosed mole  -tc-accacc----t---------------------------------------------cacaa-gc--
B D                Elephant  -tg-acaacg----t---------------------------------------------cacaa-atgc
        Cape elephant shrew  -tg-------------------------------------------------------------------
B D                 Manatee  -tg-gcaacg----t---------------------------------------------cagaa-acac
           Cape golden mole  -tg-acaacg----t---------------------------------------------cacaa-acgc
B D                  Tenrec  -tgcaggaca----g---------------------------------------------cacga-gcac
                   Aardvark  -tg-acaacg----t---------------------------------------------cacaagacac
B D               Armadillo  -tg-acaagt----t---------------------------------------------cagaa-atgc
B D                 Opossum  ----------------------------------------------------------------------
B D         Tasmanian devil  --------------------------------------------------------------------ag
B D     Medium ground finch  ----------------------------------------------------------------------
B D      American alligator  ----------------------------------------------------------------------
B D             Stickleback  ttg-aca-ct----t-----------------------------------------------------ac
B D                   Mouse  ----------------------------------------------------------------------
B D                     Rat  ----------------------------------------------------------------------
              Prairie vole  ----------------------------------------------------------------------
B D         Chinese hamster  ----------------------------------------------------------------------
            Golden hamster  ----------------------------------------------------------------------
       Princess of Burundi  ======================================================================
B D            Nile tilapia  ======================================================================
B D               Tetraodon  ======================================================================
               Zebra mbuna  ======================================================================