Multiz Alignments of 100 Vertebrates
 

Capitalize exons based on show bases
Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 118 in window, 140709759 - 140710064, 306 bps 
B D                   Human  agtgc-----------------gacagacagcctcaga-gctggtgg--gg------------agac---
B D                   Chimp  agtgc-----------------gacag----cctcaga-gctggtag--gg------------agac---
B D                 Gorilla  agtgc-----------------gacagacagcctcaga-gctggtgg--gg------------agac---
B D               Orangutan  agtgc-----------------gacagacagcctcaga-gctggtgg--gg------------agac---
B D                  Gibbon  agtgc-----------------gacagacagcctcaga-gctggtgg--gg------------agac---
B D                  Rhesus  agtgc-----------------gacagacagcctcaga-gctggtgg--gg------------agac---
B D     Crab-eating macaque  agtgc-----------------gacagacagcctcaga-gctggtgg--gg------------agac---
B D                  Baboon  agtgc-----------------gacagacagcctcaga-gctggtgg--gg------------agac---
B D            Green monkey  agtgc-----------------gacagacagcctcaga-gctggtgg--gg------------agag---
B D                Marmoset  agtgc-----------------gacag----cctcaga-gctggtgg--aa------------agac---
B D         Squirrel monkey  agtgc-----------------gacag----cttcaga-gctggtgg--aa------------agac---
B D                Bushbaby  agtgc-----------------gacag----cctcaga-gctggtgg--ag------------agacgga
         Chinese tree shrew  agtgc-----------------aacag----actcaga-gctggtgg--ag------------agac--a
B D                Squirrel  agtgc-----------------gacag----cctcaga-gctggtgg--ag------------agacaga
     Lesser Egyptian jerboa  agtgccaggcgagagagacagagccag----cctcgga-gccagtg------------------gacaca
               Prairie vole  agtgc-----------------gacag----cctcgga-gctgatgg--ag------------agac---
B D         Chinese hamster  agtgc-----------------ggcag----cctcgga-gctgatgg--ag------------agacaga
             Golden hamster  agtgc-----------------gacag----cctcaga-gctgatgg--aa------------agacaga
B D                   Mouse  agtgc-----------------gacag----cttcaga-gctgatgg--ag------------agacaga
B D                     Rat  agtgc-----------------gacag----cttcaga-gctgatgg--ag------------agacaga
B D          Naked mole-rat  agtgc-----------------gacag----cctcaga-gctgctga--aa------------agacaga
B D              Guinea pig  agtgc-----------------gacag----cctcgga-gctggtgg--aa------------aggcaga
                 Chinchilla  agtgc-----------------gactg----cctcaga-gctggtgg--ag------------agacaga
           Brush-tailed rat  agtgc-----------------gacag----cctcaga-gctagtgg--ag------------agaca--
B D                  Rabbit  agtgc-----------------gacag----cctcaga-gctggtgaagag------------agagaga
B D                    Pika  agtgc-----------------gacag----cctcaga-gctggtga----------------agagaga
B D                     Pig  agtgc-----------------gacag----cctcaga-gcccgtgg--ag------------aggcaga
B D                  Alpaca  agtgc-----------------ggcag----cctccga-gctggcgg--ac------------aggctgg
             Bactrian camel  agtgc-----------------ggcag----cctccga-gctggcgg--ac------------aggctgg
B D                 Dolphin  agtgc-----------------gacag----cctcaga-gctggtgg--ag------------aggcaga
               Killer whale  agtgc-----------------gacag----cctcaga-gctggtgg--ag------------aggcaga
           Tibetan antelope  agtgc-----------------gacaa----cctccga-gctggtgg--ag------------aggcaca
B D                     Cow  agtgc-----------------gacaa----cctccga-gctggtgg--ag------------aggcaga
B D                   Sheep  agtgc-----------------gacaa----cctccga-gctggtgg--ag------------aggcaca
              Domestic goat  agtgc-----------------gacaa----cctccga-gctggtgg--ag------------aggcaca
B D                   Horse  agtgc-----------------gacag----ccgcaga-cctggcga--ag------------aggcaga
B D        White rhinoceros  agtgc-----------------gacag----cctcaga-acgcgtga--gg------------aggccga
B D                     Cat  agtgc-----------------gacag----cctcaga-gctggtgg--aa------------aggcaga
B D                     Dog  agtgc-----------------gacag----cctcaga-gctggtgg--ag------------aagcaga
B D                 Ferret   agtgc-----------------gacaa----tctcaga-gctggtgg--ag------------aagcaga
B D                   Panda  ggtgc-----------------gacag----cctcaga-gctggcgg--ag------------aggcagc
             Pacific walrus  ggcgc-----------------gacgt----cctcaga-gctggtgg--ag------------aggcaga
               Weddell seal  ggcgc-----------------cacgg----cctcaga-gctggtgg--ag------------aggcaga
           Black flying-fox  actgc-----------------gacaa----actcaga-gctgttgc--gg------------aggcaga
B D                 Megabat  actgc-----------------gacaa----actcaga-gctgttgc--gg------------aggcaga
              Big brown bat  agtgc-----------------tatag----cctggga-gctggtgc--ag------------aggcaaa
       David's myotis (bat)  agtgc-----------------tatag----cccggga-gctggtgc--ag------------aggcaaa
B D                Microbat  agtgc-----------------tatag----cccggga-gctggtgc--ag------------aggcaaa
B D                Hedgehog  agtgc-----------------gacag----cctcaga-gctagagg--ag------------aggcaga
B D                   Shrew  agtgt-----------------gacag----cggcaga-gctggtgg--a-------------aggcagc
            Star-nosed mole  ggcgc-----------------cacag----cctcaga-gctgctgg--ag------------aggcagg
B D                Elephant  ggtgc-----------------gacag----ccacaga-gctggtag--ag------------aggcaga
        Cape elephant shrew  agtgc-----------------gacaa----ccaccga-gctgggag--ag------------aggcagg
B D                 Manatee  agtgc-----------------gacag----ctacaga-gctggtag--ag------------aggcaga
           Cape golden mole  agtgc-----------------gacag----ccacagc-cacagcca--caacatggggagagaggcaga
B D                  Tenrec  agcgc-----------------gacag----ccacaga-gccggtcg--cc------------aggcaga
                   Aardvark  agtgc-----------------gacag----ccccaga-gccgatag----------------agacaga
B D               Armadillo  agtgc-----------------ggcag----ccataga-gctggtgg--ag------------aggcgaa
B D                 Opossum  aaaac-----------------aaaaa----acttcgg-ctttttcc--ca------------agtctg-
B D                Platypus  ataaa-----------------aataa----actaaaattctacatc--at------------aagctgg
B D         Tasmanian devil  ======================================================================
B D      American alligator  ======================================================================

                      Human  -a----gcat-----gccac----tggtaagtagctgaga---------------aatattttgtaaaat
                      Chimp  -a----gcat-----gccac----tggtaagtagctgaga---------------aatattttgtaaaat
                    Gorilla  -a----gcat-----gccac----tggtaagtagctgaga---------------aatattttgtaaaat
                  Orangutan  -a----gcat-----gccac----tggtaagtagctgaga---------------aatattttgtaaaat
                     Gibbon  -a----gcat-----gccac----tggtaagtagctgaga---------------aatattttgtaaaat
                     Rhesus  -a----gcgt-----gccgc----tggtaagtcgctgaga---------------aatattttgtaaaat
        Crab-eating macaque  -a----gcgt-----gccgc----tggtaagtcgctgaga---------------aatattttgtaaaat
                     Baboon  -a----gcgt-----gccgc----tggtaagtcgctgaga---------------aatattttgtaaaac
               Green monkey  -a----gcat-----gccgc----tggtaagtcgctgaga---------------aatattttgtaaaat
                   Marmoset  -t----gcat-----gccac----tggtaagtagctgaga---------------aatattttgtaaaat
            Squirrel monkey  -t----gcat-----gccac----tggtaagtagctgaca---------------aatattttgtaaaat
                   Bushbaby  ga----gcgt-----ggcac----cggtaaggagccgaga---------------aatattccgtaaaat
         Chinese tree shrew  ga----gctt-----gcaac----tggtaagtagctgcga---------------aatcttttgtaaaat
                   Squirrel  ga----gcac-----gcaac----tggtaagtagctgaga---------------aagcgttcttaaaat
     Lesser Egyptian jerboa  ga----gcacg----gtaac----cggtaagtagctgaga---------------aagctctcatcaaat
               Prairie vole  -a----gcac-----gcaac----tggtaagtagcagaga---------------aagctctcataaaat
            Chinese hamster  ga----gcac-----gcaac----tggtaagtagccgaga---------------aagctctcataaaat
             Golden hamster  ga----gcacgcaaagcaac----tggtaagtagccgaga---------------aagctctcataaaat
                      Mouse  ga----gcac-----gcaac----tggtaagtagccgaga---------------aagctctcctaaaat
                        Rat  aa----gcac-----gcaac----tggtaagtagctgaga---------------aagctctcataaaat
             Naked mole-rat  aa----gtat-----gcaac----tggtaagtagccaaga---------------aagccttcgtaaaat
                 Guinea pig  aa----gtac-----gcaac----tggtaagtgcctaaga---------------aagccttcgtaaaat
                 Chinchilla  aagtacgcac-----gcacc----tggtaagtagccaaga---------------aagccttcgtaaaat
           Brush-tailed rat  ------gtac-----gcaac----tggtaagtagccaaga---------------aagcgttcataaaat
                     Rabbit  ga----gcat-----gaagc----tggtaagtagctgcaa---------------aatattttctcaaat
                       Pika  ga----gcat-----gaagc----tggtaagtagctg-aa---------------aatattttctcagat
                        Pig  gc----gcag-----gcagc----tggtaagtagctgtga---------------aatcttttgtaaaat
                     Alpaca  gc----gcct-----gcagc----tggtaagtagctgaga---------------aatcttttgtaaaat
             Bactrian camel  gc----gcct-----gcagc----tggtaagtagctgaga---------------aatcttttgtaaaat
                    Dolphin  gc----gccg-----gcagc----gggtaagtagctgaga---------------aatcttttgtaacat
               Killer whale  gc----gccg-----gcagc----gggtaagtagctgaga---------------aatcttttgtaacat
           Tibetan antelope  gc----gaag-----gcagc----tggtaagtagcggaga---------------aatcttttgtaacat
                        Cow  gc----gaag-----gcagc----tggtaagtagcggaga---------------aatcttttgtaatat
                      Sheep  gt----gaag-----gcagc----tggtaagtagcggaga---------------aatcttttgtaacat
              Domestic goat  gc----gaag-----gcagc----tggtaagtagcggaga---------------aatcttttgtaacat
                      Horse  gc----gcat-----gcagc----tggtaagtagctgaga---------------aatcttttgtaaaat
           White rhinoceros  gt----gcgt-----gcagc----tggtaaggagctgaga---------------aatcttttgtaaaat
                        Cat  gc----gcag-----gcagc----tggtaagtagctgaga---------------aatcttttgtaaaat
                        Dog  gc----gctt-----gcagc----tggtaagtagctgaga---------------aatcttttgtaaaat
                    Ferret   gc----gcgt-----gcagc----tggtaagtagctgaga---------------aatcttttgtaaaat
                      Panda  gc----gc-------gcagctagctggtaagtagctaaga---------------aatcttttgtaaaat
             Pacific walrus  gc----gcag-----gcagc-----ggtaagtagctgaga---------------aatcttttgtaaaat
               Weddell seal  gc----gcag-----gcagt-----ggtaagtagctgaga---------------aatcttttgtaaaat
           Black flying-fox  tc----gcat-----gctgc----tggtaagtagctgaga---------------aatattttgtaaaat
                    Megabat  tc----gcat-----gctgc----tggtaagtagctgaga---------------aatattttgtaaaat
              Big brown bat  gc----gcat-----gctgc----tggtaagtagccgagc---------------aatcttttgtaaaat
       David's myotis (bat)  gc----gcat-----gctgc----tggtaagtagctgaac---------------aatcttctgtaaatt
                   Microbat  gc----gcac-----gctgc----tggtaagtagctgagc---------------aatcttctgtaaaat
                   Hedgehog  gc----ggaa-----gcagc----tggtgagtagctgagg---------------aatcttttgtaaact
                      Shrew  gc----aggt-----acagc-----ggtaagtaactgaga---------------aatatttcataaaag
            Star-nosed mole  gt----gcct-----gcagc----tggtaagtagctgaga---------------aatcttttgtgaact
                   Elephant  gt----tctt-----gcagc----tggtgagtagctgaga---------------aatcgtttgtgaaat
        Cape elephant shrew  at----tcgc-----gcagc----tggtgagtagctgagg---------------aatcttttgtaaaac
                    Manatee  gt----tcgc-----gcagc----tggtgagtagctgaga---------------aatcttttgtaaaat
           Cape golden mole  gt----tcct-----gcggc----tggtgagtagctgtga---------------aatggtctgtaaaag
                     Tenrec  gt----tcga-----gcggc----tggtaagtagctgaga---------------agtcctccgtagaat
                   Aardvark  gt----tcgt-----gcagc----cggtgagtcactcaga---------------gatgctttgtaaaag
                  Armadillo  gc----acat-----gcaac----tggtaagtagctgaga---------------aattgcttgtaaaat
                    Opossum  ------gggt-----gaatc----tggtaagcaactgagg---------------gatattt--ttggag
                   Platypus  ga----acaa-----ctagg----tgattagtaaccctgaatatttggttaatataatattttccaagac
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  aga-tatc---------cagact--a----agattttt------------a-------------aagcaa
                      Chimp  aga-tatc---------cagact--a----agattttt------------t-------------aagcaa
                    Gorilla  aga-tatc---------cagact--a----agattttt------------a-------------aagcaa
                  Orangutan  aga-tatc---------cagact--a----agattttt------------a-------------aagcaa
                     Gibbon  aga-tatc---------cagact--a----agattttt------------a-------------aagcaa
                     Rhesus  aga-tatc---------cagact--a----agattttt------------a-------------aagcaa
        Crab-eating macaque  aga-tatc---------cagact--a----agattttt------------a-------------aagcaa
                     Baboon  aga-tatc---------cagact--a----agattttt------------a-------------aagcaa
               Green monkey  aga-tatc---------cagact--a----agattttt------------a-------------aagcga
                   Marmoset  aga-taac---------cagact--a----agattttt------------a-------------aagcaa
            Squirrel monkey  aca-taac---------cagact--a----agatttct--------------------------aagcaa
                   Bushbaby  agg-tatc---------caggct--g----ggttttct------------t-------------aaagca
         Chinese tree shrew  ata-aatt---------caggct--atgcttgcttttt------------a-------------aagcaa
                   Squirrel  agt-tacc---------aaggct--c----tgcttttc------------a-------------aagcta
     Lesser Egyptian jerboa  aga-tgtc---------aagcat--c----cgctttcc------------g-------------aggcaa
               Prairie vole  agt-tgtt---------aaagct--c----cgctttct------------a-------------aagcaa
            Chinese hamster  agt-tgct---------aagtct--c----tgctttct------------a-------------aagcaa
             Golden hamster  agt-tgct---------aaggct--c----tgctttct------------a-------------cagcaa
                      Mouse  agt-tgct---------aaggctgat----ttttttta------------t-------------aagcaa
                        Rat  agt-tgct---------aaggct--c----tgttttct------------a-------------aagcaa
             Naked mole-rat  act-tatc---------aaggct--c----cacttttt------------a-------------aagcaa
                 Guinea pig  act-tacc---------gaggct--c----cacttttt------------a-------------aatcga
                 Chinchilla  act-tatc---------gaggct--c----cacttttt------------a-------------agccga
           Brush-tailed rat  act-taat---------caggat--g----cacttttt------------g-------------aaccgt
                     Rabbit  gca--ttc---------caggcc--t----tgtttttt------------ttttttttttaaacaagcaa
                       Pika  gcg-tttc---------caggcc--t----tgtttttt------------t-----------ataagcaa
                        Pig  aga-tatc---------caaaat--a----tgcttttg----------aaa-------------gagcaa
                     Alpaca  agg-tatc---------caaaat--c----cgcttttt------------a-------------aagcaa
             Bactrian camel  agg-tatc---------caaaat--a----cgcttttt------------a-------------aagcaa
                    Dolphin  aga-tatc---------cgaaat--a----cgcttttt------------a-------------aagcaa
               Killer whale  aga-tatc---------cgaaat--a----cgcttttt------------a-------------aagcaa
           Tibetan antelope  aga-tatc---------tgaaac--g----tgttttttttttttttttaaa-------------tagtaa
                        Cow  aga-tatc---------cgaaac--g---ttttttttttttttttttttaa-------------tagcaa
                      Sheep  aga-tatc---------cgaaac--g----tttttttattttttttttaaa-------------tagcaa
              Domestic goat  aga-tatc---------cgaaac--g---tttttttttttttttttttaaa-------------tagcaa
                      Horse  aga-tatc---------caaaat--a----tgcttttt------------a-------------aagcaa
           White rhinoceros  aga-tatc---------caaaat--a----tgcttttt------------c-------------aagcaa
                        Cat  aga-tccc---------caaaat--a----cgctttgc------------a-------------aagtga
                        Dog  aga-tacc---------caaaat--a----cgcttttc------------a-------------aagcca
                    Ferret   agg-tccc---------caaaat--g----tgcttttc------------a-------------aagcaa
                      Panda  aga-tccc---------caaaat--g----tgcttttc------------a-------------aagcaa
             Pacific walrus  aga-tacc---------ccaaat--g----tgctttt------------------------------aaa
               Weddell seal  aga-tacc---------caaaat--a----tgctttt------------------------------aaa
           Black flying-fox  aga-tatg---------caaaat--a----cgctttct------------a-------------aagcga
                    Megabat  aga-tatg---------caaaat--a----cgctttct------------a-------------aagcga
              Big brown bat  aga-tacc---------caaaat--a----tgctttct------------a-------------aatcaa
       David's myotis (bat)  aga-tacc---------caaaat--a----tgctttct------------a-------------aagcaa
                   Microbat  gga-tacc---------caaaat--a----tgctttct------------a-------------aagcaa
                   Hedgehog  aga-taac---------caaaat--a----tgcttact------------g-------------atgcaa
                      Shrew  agcttatc---------caaaat--a----agctttcc------------g-------------aagcta
            Star-nosed mole  agc-tata---------caaatt--a----tgcttttt------------g-------------tagcag
                   Elephant  aca-tttc---------caagct--c----tgattttg------------a-------------aggcaa
        Cape elephant shrew  agg-tttc---------catact--g----tgattctg------------a-------------aagccg
                    Manatee  aga-tttc---------caagct--g----ggattttg------------a-------------aagcaa
           Cape golden mole  aca-tttg---------caggc---a----tgcttttg------------a-------------aaccaa
                     Tenrec  aga-tttc---------caagct--c----tgggtttg------------a-------------aagcaa
                   Aardvark  aga-tttc---------caagct--c----tgtttttg------------a-------------aagcaa
                  Armadillo  aga-tttc---------caagcc--a----tgcctttt------------a-------------gagcaa
                    Opossum  aga-agac---------catgtg--t----agcatttt------------t-------------tctctt
                   Platypus  atc-tatccatcttccacaggtt--a----tatttctt------------c-------------cagaaa
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  gcga------catg-------ttttgagggaatagaataatgcaaaattgtgtaggaatctc--tgattc
                      Chimp  gcga------catg-------ttttgagggaatagaataatgcaaaattgtgtaggaatctc--tgattc
                    Gorilla  gcga------catg-------ttttgatggaatagaataatgcaaaattgtgtaggaatctc--tgattc
                  Orangutan  gcga------catg-------ttttgatggaatagaataatgcaaaactgtgtaggaatctc--tgattc
                     Gibbon  gtga------catg-------ttttgatggaatagaataatgcaaaactgtgtaggaatctc--tgattc
                     Rhesus  gtga------catg-------ttttgatggaagagaataatgcagaactgtgtaggaatccc--tgattc
        Crab-eating macaque  gtga------catg-------ttttgatggaagagaataatgcagaactgtgtaggaatccc--tgattc
                     Baboon  gtga------catg-------ttttgatggaagagaataatgcagaactgtgtaggaatccc--tgattc
               Green monkey  gtga------catg-------ttttgatggaagagaataatgcagaactgtgtaggaatccc--tgattc
                   Marmoset  gtga------tgtg-------ttttgatggactagaataatgcaaaactctgtaggagt--c--tgatgc
            Squirrel monkey  gtga------cgtg-------ttttgatggaatagaataatgcaaaactgtgtaggaat--c--tgattc
                   Bushbaby  gtga------cgta-------ttttaatgaaagagaaaaatacagagctgtgttggaatttc--tgattc
         Chinese tree shrew  gcga------catg-------ttttgatggaacagaataatacagaactgtgtaggaatttc--tgattc
                   Squirrel  ctga------cgtg-------ttttgatgcagtagaaaaatacagagctgtataggaatttc--t----c
     Lesser Egyptian jerboa  gtaa------cagt--------tttgatggaatagactaatacagaactaaggaggaatttc--t----c
               Prairie vole  gtga------cacg-------ttttgatgaaacaagatagcatagaactgtggaggaatttg--c----c
            Chinese hamster  gtga------tgca--------tttgatggaacaaaatagcatagaactgtgcaggaatttg--t----c
             Golden hamster  gtga------cgca--------tttgatagaacaaaatagcatagaactgtgcaggaatttg--t----c
                      Mouse  gtga------tgca-------ttttgatggaatagaacagcatagaactgtgtaggaatttg--t----t
                        Rat  atga------tgca-------ttttcatgggatagaatatcatagacctgtataagaatttg--t----c
             Naked mole-rat  atga------catg-------ttttgatggaatgcagtaaaacaggactgtgtaggaatttc--t----g
                 Guinea pig  gtgg------catg-------tttggatggaatagaataatacagagctgtggaggaatttc--t----c
                 Chinchilla  gtga------catg-------ttttgatggaatggaataatacagacctgtgcaggaatttc--t----g
           Brush-tailed rat  gtga------catg-------ttttgttggagtggaatgatacaaacctgtgtaggaatttc--t----g
                     Rabbit  gtga------catg-------cctttatggaatagagtaacacag-actgtgtaggaatttc--tgattg
                       Pika  gtga------catg-------atttgatggaatggagaaacacagaactgtgtaggaatttc--tgatcg
                        Pig  gtga------cata-------ttttgatggaacaggataatacagaactgcgtaggaatttc--tgattc
                     Alpaca  gtga------cagg-------ttttgatggaaccgactaatacagaatcgtgtaggaatttc--tgattc
             Bactrian camel  gtga------cagg-------ttttgatggaaccgactaatacagaaccgtgtaggaatttc--tgattc
                    Dolphin  gcga------cgtg-------ttttgatggaacacaataatgcagaactgtgtaggaatttg--tgattg
               Killer whale  gcga------tgtg-------ttttgatggaacacaataatacagaactgtgtaggaatttg--tgattg
           Tibetan antelope  gcga------catg-------ttttgatggatcaaaataatacagaactgtggaggaatttc--tgattt
                        Cow  gcga------catg-------ttttgatggatcaaaataatacataactgtggaggaatttc--tgattt
                      Sheep  gcga------catg-------ttttgatggatcaaaataatacagaactgtggaggaatttc--tgattt
              Domestic goat  gcga------catg-------tttttatggatcaaaataatacagaactgtggaggaatttc--tgattt
                      Horse  gtga------tatggaatgaattttgatggaattgaataa-acagaactgtggaggaatttc--tgattc
           White rhinoceros  atga------tagg-------ttctgatggaatggaatagtacagaactgtgtaggaatttc--tgattc
                        Cat  acaa------catg-------ttttgatggagtagaataatacagaacgatctaggaatccc--tgattc
                        Dog  gtga------catg-------ttttgatggaatagagtaatacagaactgtgtaggaattcc--tgattc
                    Ferret   gtga------caag-------ttttgatggaaaagaataatacagaactgtgtaggaattcc--tgattc
                      Panda  gtga------caag-------ttttgatggaagagaataatacagaactgtgtagaaattcc--tgattc
             Pacific walrus  gtga------caag-------ttttgatggaatagaataatacagaactgtgtaggaatttc--tgattc
               Weddell seal  gtgg------caag-------ttttgatggaatagaataatacagaactgtgtaggaattcc--tgattc
           Black flying-fox  gtga------catg-------ttttaatggaatacaataatgcagaactgtataggaatttc--tgattc
                    Megabat  gtga------catg-------tttt----------aataatacagaactgtataggaatttc--tgattc
              Big brown bat  gtgg------catg-------ttttaatggaatagaataatactaaactgtgtaggaatttc--agattc
       David's myotis (bat)  gtga------catg-------ttttaatggaatagaataatactaaactgtgtaggaatttc--gaattc
                   Microbat  gtga------catg-------ttttaatggaatagaataatactaaagtgtgtaggaatttc--gaattc
                   Hedgehog  gtgg------catg-------tcctaatggaacgggataatacagaactgtgtaggaatttc--agatgc
                      Shrew  gtga------caca-------tgttggtggcatagaatagctcagaactgtgtaggaatttc--tgattc
            Star-nosed mole  gtga------cagg-------tcttgatggaatagaataatacagagctgtgttggaatttc--tgcttc
                   Elephant  gtga------cacg-------ttttgatgaaacagaataacgcagaactgtgtaggaatttt--tgtttc
        Cape elephant shrew  gtgt------catg-------tttggacgcaacaaaataatatagaccagcagaggagtttc--tgattt
                    Manatee  gtga------caca-------ttttgatgaaacagaatagtacagaactgtgtaggaatttt--tgtttc
           Cape golden mole  gtga------catg-------ttttgattaaataaaataccacagaactgggtaggaatgtt--tgtttc
                     Tenrec  gcgacgtctgcgtg-------gtttgcggaaaccaaacgatacagaatgatgtgggaatttt--tgattc
                   Aardvark  gtaa------cacg-------ttctgatgaaacaaaatcatagccaactgtgtaggaatttt--tgatcc
                  Armadillo  ttga------cata-------ttttgatggaacacaataatagagacctgtgcaggaaattt--ttattc
                    Opossum  gctg------tata-------ctctggacagttaaaagaaagc---------------------tggttc
                   Platypus  gggt------cgca------------------------------------ggaagaaacttcagtgattt
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  taatcagcagcattggg---aaa-tggatt--------------aa-tta--aattctaaatat------
                      Chimp  taatcagcagcattggg---aaa-tggatt--------------aa-tta--aattctaaatat------
                    Gorilla  taatcagcagcattggg---aaa-tggatt--------------aa-tta--aattctaaatat------
                  Orangutan  taatcagcagcattggg---aaa-tggatt--------------aa-tta--aattctaaatat------
                     Gibbon  taatcagcagcattggg---aaa-tggatt--------------aa-tta--aattctaaatat------
                     Rhesus  taatcggcagcattggg---aaa-tggatt--------------aa-tta--aattctaaatat------
        Crab-eating macaque  taatcggcagcattggg---aaa-tggatt--------------aa-tta--aattctaaatat------
                     Baboon  taatcggcagcattggg---aaa-tggatt--------------aa-tta--aattctaaatat------
               Green monkey  taatcggcagcattggg---aaa-tggatt--------------aa-tta--aattctaaatat------
                   Marmoset  taatcagcagcattggg---gaa-tggatt--------------aa-ttt--aattctgaatat------
            Squirrel monkey  taatcagcagcactggg---gaa-tggatt--------------aa-ttt--aattctaaatat------
                   Bushbaby  tgatcagcagcactggga--aaa-gggatt--------------ca-ttc--cattctaaatat------
         Chinese tree shrew  aga-caggggcattgaga--aaa-tgaatt--------------aa-ctg--cattctaaacac------
                   Squirrel  aagtcagtggcactaag---aag----ctg--------------ga-tta--catcacaaatat------
     Lesser Egyptian jerboa  gaggcagtggcactggg---aaa----atg--------------aa-ttc--gat-------ac------
               Prairie vole  tagtctgtagcaccaag---aaa----ata--------------gg-tta--tattctaaagat------
            Chinese hamster  tagtccatagcaccaag---aaa--------------------------a--tattctaaagat------
             Golden hamster  tagtccatagcaccaag---aaa----atg--------------gg-tta--tattctaaagat------
                      Mouse  taatctatagcaccaag---aaa----atg--------------ga-aca--gattcta---at------
                        Rat  tagtccatagcaccaag---aaa----att--------------ga-ata--tattctt---at------
             Naked mole-rat  tagtcagtggcgctggg---atg----gtg--------------ga-ttg--aattctaaatat------
                 Guinea pig  cagtcagtggcactga----aag----atg--------------ga-ttc--aattctaaatat------
                 Chinchilla  gaggcagcggcactggg---aag----atg--------------ga-ttc--aattgtaaatat------
           Brush-tailed rat  tagtcggcggcactgag---aag----atg--------------ga-ttc--aattgtatatat------
                     Rabbit  tagtcagtagcattaca---aaa----atg--------------ga-tta--taatatacatat------
                       Pika  tagtcagtggcactgga---aaa----aag--------------ga-tta--gattctaaatac------
                        Pig  tcatcagtggcattgag---aaaatggctt--------------ca-tca--aattctaaatat------
                     Alpaca  taatcagtgacactgag---aaaatggctg--------------aa-tta--gattctaaatat------
             Bactrian camel  taatcagtgacattgag---aaaatggctg--------------aa-tta--gattctaaatat------
                    Dolphin  taatcagcggcattgag---aaaatggctt--------------aa-ttc--aattctaaatct------
               Killer whale  taatcagcggcattgag---aaaatggctt--------------aa-ttc--aattctaaatct------
           Tibetan antelope  taatccat-gcattgag---aaaatggctt--------------aa-ttc--aattctaaacat------
                        Cow  taatccatggcattgag---aaaatggctt--------------aa-ttc--aattctaaacat------
                      Sheep  taatccat-gcattgag---aaaatggctt--------------aa-ttc--aattctaaacat------
              Domestic goat  taatccat-gcattgag---aaaatggctt--------------aa-ttc--aattctaaacat------
                      Horse  taatcagtggtgttggg---aaaatggatt--------------aa-tta--aattctaaatat------
           White rhinoceros  taatcagtggcattggg---aaaatgg------------------a-tta--aattctaaatat------
                        Cat  taatcaccagtatttgg---aaaatggatt--------------aa-tta--aattctaaatat------
                        Dog  taatcagcagtattggg---aaaatggatt--------------ca-tta--gattctaaataa------
                    Ferret   taatcagcagtattggg---aagatgggtt--------------agttcc--aa-tctaaatat------
                      Panda  taatcagcagtattggg---gaaatgga-------------------tta--aattctaactat------
             Pacific walrus  taatcagcagtattggg---aaaatgaatt--------------cgttta--aattctaaatat------
               Weddell seal  taatcagcagtattggg---aaaacaaatt--------------agttta--aattctaaatat------
           Black flying-fox  ttatcagcaacattggg---aaaatgaatt--------------aa-tta--aattataaatgt------
                    Megabat  ctatcagcaacattggg---aaaatgaatt--------------aa-tta--aattataaatgt------
              Big brown bat  taatcagtagcattggg---aaaatggatt--------------aa-tta--tattctaaatat------
       David's myotis (bat)  taatcagtagcacttga---aaaatggctt--------------aa-tta--tagtctaaatat------
                   Microbat  taatcagtagcacttgg---aaaatggctt--------------aa-tta--tagtctaaatat------
                   Hedgehog  tagtgcattgcgtgggg---aggagggatt--------------ga-atc--ggttagaaaagg------
                      Shrew  tattaagttgtatgtag---aagatggatt--------------aa-atc--aattctaaatac------
            Star-nosed mole  taatcagtggcattggc---gaaatggatt--------------ag-ata--aattctgaatac------
                   Elephant  taatcagctgcaatggg---aaaagggatt--------------aa-tta--aattgtaaacag------
        Cape elephant shrew  taatcagtggagagggg---gaaatagatc--------------ca--ca--catggttaatcg------
                    Manatee  taatcagtggcagtggg---aaaagggatt--------------aa-tta--aattgtaaacag------
           Cape golden mole  tgctcagtggcaatgagag-aacatggatg--------------aa-tta--tattgttaacag------
                     Tenrec  tcatcggtgccaaggggagaaaccgggatg--------------ag-tgcgtttttttcaaggg------
                   Aardvark  taatcagtggcaacagg---aaaacggatt--------------cc-tta---------aatag------
                  Armadillo  taattagtggccttagg---aaaatggatt--------------aa-tta--aattctaaatag------
                    Opossum  ta-tcagcaacactgag---aaaatgagct--------------cc-ttg--gaggataaatatgcagga
                   Platypus  ttttcagcg----cagg---aaaacagattctacaaaaataggaaa-tta--tatttagatcat------
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  -------tccct-ggtca-tttttctag--tttaaagcttgtt-tcttaaatgatg---gag---ttgct
                      Chimp  -------tccct-ggtca-tttttctag--tttaaagcttgtt-tcttaaatgatg---gag---ttgct
                    Gorilla  -------tccct-ggtca-tttttctag--tttaaagcttgtt-tcttaaatgatg---gag---ttgct
                  Orangutan  -------tccct-ggtca-tttttctag--tttaaagcttgtt-tcttaaatgatg---gag---ttgct
                     Gibbon  -------tccct-ggtca-tttttctag--tttaaagcttgtt-tcttaaatgatg---gag---ttgct
                     Rhesus  -------cacct-ggtca-tttttctag--tttaaagcttgtt-tcttaaatgacg---gag---ttgct
        Crab-eating macaque  -------cacct-ggtca-tttttctag--tttaaagcttgtt-tcttaaatgacg---gag---ttgct
                     Baboon  -------cacct-ggtca-tttttctag--tttaaagcttgtt-tcttaaatgacg---gag---ttgct
               Green monkey  -------cacct-ggtca-tttttcgag--tttaaagcttgtt-tctgaaatgacg---gag---ttgct
                   Marmoset  -------tccct-ggtca-tttttctag--tttaaagcttgtt-tcttaaatcatg---gag---ttgct
            Squirrel monkey  -------ttcct-ggcca-tttttctag--tttaaagcttgtt-tcttaaatcacg---gag---ttgct
                   Bushbaby  -------ttcgt-cgtca-cttttctag--tttaaagcttcct-tcttaaacgccgaatgag---ttgct
         Chinese tree shrew  -------tccgt-cgtcactttttttag--tttaaagcatgct-tcttaaatggtgactaag---ttgct
                   Squirrel  -------tccat-agtcg-cttttccag--tttaaaccttatt-tcttgaatggtgaatgag---ttgct
     Lesser Egyptian jerboa  -------tttgt-gctca-cgttgtcag-ttttaaggcttgct-tcgtaaatgatgactgag---t----
               Prairie vole  -------tacat-ggtca-ctttcctag--tttaaagcttgct-ttctaaatgatgaatgac---tcgat
            Chinese hamster  -------tgcac-ggcca-ctttcctag--tttaagactcgct-ttctaaatgatgaatgac---tcaat
             Golden hamster  -------tgcac-ggtca-ctttcctag--tttaaggctctct-ttttaaatgatgaatgac---tcgat
                      Mouse  -------tctgt-ggtca-cgttcctag--tttaaggcttgct-ttctaaatggtgaatgac---ttggt
                        Rat  -------tccac-gctca-cgttcctaa--tttaaggctcgct-tcctaaatgatgaatgac---ttgat
             Naked mole-rat  -------tcctc-ggtta-cttttctag--tttaaagcttgct-tcttaaatggtgagtgag---ttgct
                 Guinea pig  -------tcctt-ggtta-cttttctag--tttaaagcttgct-tcttaaatggtgagtgaa---ttgct
                 Chinchilla  -------tccttgggtta-cttttctag--tttaaagcttgtt-tcttaaatggtgagtgag---ttgct
           Brush-tailed rat  -------tcctt-ggcta-cttttctag--tttaaagcttgct-tcttaaatggtgagtgag---ttgct
                     Rabbit  -------ttcat-gatca-cttctctag--cttagagcttgct-ttttaaacagtgaatgaa---ttact
                       Pika  -------ttaat-gatca-ctttcctag--ttta-agcttgct-catgaaacagtgaatgaaacgccact
                        Pig  -------tccat-ggaca-cttttctag--tctaaagcttgtc-tcttaaattgtgagtgag---ttcct
                     Alpaca  -------tccac-ggtca-cttttctag--tttaaagctggtt-tcttaaatagtgaatatg---ttcct
             Bactrian camel  -------tccac-ggtca-cttttctag--tttaaagctggtt-tcttaaatagtgagtata---ttcct
                    Dolphin  -------tccac-ggtca-cttttctag--tttaaagctcatt-tcttaaacggtgaatgag---ttcct
               Killer whale  -------tccac-ggtca-cttttctag--tttaaagctcatt-tcttaaacggtgaatgag---ttcct
           Tibetan antelope  -------tccat-ggtca-ctgttctag--tttaaagctcgtt-tctgaaaaagtgaatgaa---ttttt
                        Cow  -------tccac-ggtca-cttttctag--tttaaagctcgtt-tctgaaaaagtgaatgaa---ttttt
                      Sheep  -------tccat-ggtca-cttttctag--tttaaagctcgtt-tctgaaaaagtgaatgaa---ttttt
              Domestic goat  -------tccat-ggtca-cttttctag--tttaaagctcgtt-tctgaaaaagtgaatgaa---ttttt
                      Horse  -------tctat-ggtca-attttctag--tttaaagcttgtt-tcttaaatggtgaatgag---ttgct
           White rhinoceros  -------tctat-ggtcg-cttttatag--tttaaagcttgtt-tcttaaatggtgaatgag---ttgct
                        Cat  -------tccac-agtca-cgttactag--tttaaagcttgtg-tcttacatggtaagtggg---ccgcc
                        Dog  -------tccac-ggtca-ctttatgag--tttaaagcttgtt-tcttaaatggcaaatgag---ttgct
                    Ferret   -------tcccc-ggtca--tgtactag--ttcaaagcttgtt-tcttaaatggcaaatgag---ttgct
                      Panda  -------tccat-agtca-ctttactag--ttgaaagctcgtt-tcttaaacggtaaatgag---ttgct
             Pacific walrus  -------tccat-ggtca-ctgtactag--tttaaagctcgtt-tcttaaatggcaaatgag---ttgct
               Weddell seal  -------tccat-ggtca-ctttactag--tttaaagctcatt-tcttaaacggcaaatgag---ttgct
           Black flying-fox  -------tccac-ggtca-cttttctag--tttaaagcttgtt-tcttaaatg-tgcatgag---ttgct
                    Megabat  -------tccac-ggtca-cttttctag--tttaaagcttgtt-tcttaaatg-tgcatgag---ttgct
              Big brown bat  -------ttcac-agtca-cttttctag--tttaaagcttgtg-tcttaaatggtgagtgag---ttgtt
       David's myotis (bat)  -------ttcac-ggtca-cttttctag--tttaaagcttgtg-tcttaaatg----gtgag---ttgtt
                   Microbat  -------ttcac-ggtca-cttttctag--tttaaagcttgtg-tcctaaatg----gtgag---ttgtt
                   Hedgehog  -------tctgt-ggcca-ctttac-at--ttccgaacttgtt-tcttaaatggggacagag---ttgct
                      Shrew  -------tccac-ggtca-ctttcctag--ttcaaaacttg-----ttaaacggtgaataag---ctgct
            Star-nosed mole  -------tccat-ggtca-ctttttgag--ttcaaaacttgtt-tcttaaatggctaatgag---ttgct
                   Elephant  -------cccgg-aatca-cttttctag--ttcaatgcttgtt-tcttcaaaggtgaatgag---ttgct
        Cape elephant shrew  -------tgcac-agtca-tttttctag--tttaatgcttgttgttttcaagggcaactgag---gtgct
                    Manatee  -------cccac-agtca-cttttctag--tttaatgcttgtt-tcttcaaaggtgactgag---ttgct
           Cape golden mole  -------tccac-agtca-cttttccag--tgtcatgcttgtt-tcttcaaaggtgaataag---ctgct
                     Tenrec  -------tccac-actca-ctcttccag--cttaatgcttgct-tgctcaaaggtgaatgag---ggact
                   Aardvark  -------tccac-agtca-cttttctcg--cttagtgctggtc-tcttcaaaggtgaatgag---ttgct
                  Armadillo  -------cccac-agtca-ctgttctag--tttaaaatgtgtt-tcttaaaaggtgactgag---ttgct
                    Opossum  taaataggccag-ggttg-tcctgcatc--ctctcagcttgcc-tgacaaaggtcaactg-g---ttgct
                   Platypus  -------cttat-tttgg-tgttgcagggtatgcaggtaggat-gcgtaagttgtgttggat---tctct
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  ----aggag-----g-caatatagaaac-tt-------------------tccc-cttg-tgattcttg-
                      Chimp  ----aggag-----g-caatatagaaac-tt-------------------tccc-cttg-tgattcttg-
                    Gorilla  ----aggag-----g-caatatagaaac-tt-------------------tccc-cttg-tgattcttg-
                  Orangutan  ----aggag-----g-caatatagaaac-tt-------------------tccc-cttg-tgattcttg-
                     Gibbon  ----aggag-----g-caatatagaaac-tt-------------------tccc-cttg-tgattcttg-
                     Rhesus  ----aggag-----g-aaatatagaaac-tt-------------------cccc-cttg-tgattcttg-
        Crab-eating macaque  ----aggag-----g-aaatatagaaac-tt-------------------cccc-cttg-tgattcttg-
                     Baboon  ----aggag-----g-aaatatagaaac-tt-------------------cccc-cttg-tgattcttg-
               Green monkey  ----aggag-----g-aaatatagaaac-tt-------------------cccc-cttg-tgattcttg-
                   Marmoset  ----aggag-----g-aaatgtagaaac-tt-------------------tccc-ctcg-tgattcttg-
            Squirrel monkey  ----aggag-----g-aaatgtagaaac-tt-------------------tacc-ctcg-tgattcttg-
                   Bushbaby  ----agaag-----g-aaagatagaaac--t-------------------cccc-ctgg-tgattc-gg-
         Chinese tree shrew  ----agaag-----g-acacataaaaac--t-------------------cccc-cctg-acattctgg-
                   Squirrel  ----agaag-----g-aaataaagagcc-tt-------------------cccc--tca-tgattctgg-
     Lesser Egyptian jerboa  ----------------tgctacagaacc-tt-------------------tcccttctg-----tccgg-
               Prairie vole  ----agaag-----a-aaata-agaaca-ca-------------------taaaaatag-aaaatttcg-
            Chinese hamster  ----agaag-----gaaaatacagaaca-ca-------------------cataaattg-caaatttca-
             Golden hamster  ----agaag-----g-aaacacagaacg-ca-------------------cataaattg-caaatttca-
                      Mouse  ----agaag-----g-aaatacagacta-cg-------------------cataaattg-cgaatctga-
                        Rat  ----agaaa-----g-aaatatagaaca-ca-------------------cgtaaattg-tgaatctga-
             Naked mole-rat  ----agaag-----g-agatacagactc-tt-------------------cccc--ttg-taattctgg-
                 Guinea pig  ----agaag-----g-gaatacagatgc-tt-------------------cctc--ttg-tgatgctgg-
                 Chinchilla  ----agcag-----g-aaatacagacac-tt-------------------cccc--ttg-tgattctgg-
           Brush-tailed rat  ----acagg-----g-aaattcagacac-tt-------------------cccg--ttg-tgattcttg-
                     Rabbit  ----agaag-----g-aaatatagaaac-tt-------------------ctcc--ttgttaatccttg-
                       Pika  ----agaa------a-atatatagcaac-tt-------------------ccca--ttg-cgatccttg-
                        Pig  ----agaag-----g-aaatatagaaac-tt-------------------tccc-ctta-tgattctgg-
                     Alpaca  ----agaag-----g-aaatatagaaac-tt-------------------cccc-cttg-tgattctgg-
             Bactrian camel  ----agaag-----g-aaatatagaaac-tt-------------------cccc-cttg-tgattctgg-
                    Dolphin  ----agaag-----g-aaatatagaaac-tt-------------------ccct-cttg-tgattctggt
               Killer whale  ----agaag-----g-aaatatagaaac-tt-------------------ccct-cttg-tgattctggt
           Tibetan antelope  ----agaag-----g-agatatagaaac-tt-------------------ccct-cttg-tgattctggt
                        Cow  ----agaag-----g-aagtatagaaac-tt-------------------ccct-cttg-tgattctggt
                      Sheep  ----agaag-----g-aggtatagaaac-tt-------------------ccct-cttg-tgattctggt
              Domestic goat  ----agaag-----g-aggtatagaaac-tt-------------------ccct-cttg-tgattctggt
                      Horse  ----agaag-----g-aaatacagaaac-ct-------------------cccc-tttg-tgattctgg-
           White rhinoceros  ----agaag-----g-aaatatagaaac-tt-------------------tccc-tttg-tgattctgg-
                        Cat  ----ggagg-----g-aaatctagaaac-g--------------------gccc-cttg-tgattctgg-
                        Dog  ----ggaag-----g-aaatatagaaat-ct-------------------tccc-cttg-tgactctgg-
                    Ferret   ----ggaag-----g-aaatataggaat-c--------------------tccc-cttg-tgattctgg-
                      Panda  ----agaag-----g-aaatacagaaat-c--------------------tccc-cttg-tgattctgg-
             Pacific walrus  ----agaag-----g-agatatagagat-c--------------------tccc-cttg-tgattctgg-
               Weddell seal  ----agaag-----g-aaatatagagat-c--------------------tccc-cttg-tgaatctgg-
           Black flying-fox  ----ggaag-----a-aaatatagaaacttt-------------------cccc-cttg-cgattctgg-
                    Megabat  ----ggaag-----a-aaatatagaaacttt-------------------cccc-cttg-cgattctgg-
              Big brown bat  ----ggaag-----a-aaatatagaaac-tt-------------------cctc-cttg-tgattctgg-
       David's myotis (bat)  ----ggaag-----a-aaatatagaaac-tt-------------------cctc-cttg-tgattctgg-
                   Microbat  ----ggaag-----a-aaatatagaaac-tt-------------------cctc-cttg-tgattctgg-
                   Hedgehog  aga-agaag-----g-aaaaagagagac-ttcctcctccccgcttgctgctccc-caag-tgattctgg-
                      Shrew  ----agacg-----c-gagaacggaaag-gt---------------------cc-cttg-tgactccgg-
            Star-nosed mole  ----agaag-----g-aaatatagaaac-gt--------------------gcc-cttg-tatttctgg-
                   Elephant  ----agaag-----g-aagtatagaacc-tt-------------------cctc--tgg-cgattctgt-
        Cape elephant shrew  ----agaag-----g-gaa------------------------------------------gattttga-
                    Manatee  ----agaag-----g-aaatatagaacc-tt-------------------cctc--tag-tgattctgg-
           Cape golden mole  ----agaag-----g-acatagcgaacc-tt-------------------cctc--ttg-agatgttgg-
                     Tenrec  ----acaag-----g-aaatgcagagcc-tt-------------------cctc--tgg-tgattctgg-
                   Aardvark  ----agaag-----g-gaacagagaacc-tt-------------------cctc--ttg-tgattctgg-
                  Armadillo  ----agaag-----g-aaatatagaa-c-tt-------------------cccc--ttg-tgattctgg-
                    Opossum  gggtagaag-----g-gaatgtggaaaa-tg-------------------cttc-ctcg-agtctcgga-
                   Platypus  ----agttgtctcag-aaata---aaac-at-------------------tccc-tagg-tgattgtgg-
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  taaaatatttcc-ta
                      Chimp  taaaatatttcc-ta
                    Gorilla  taaaatatttcc-ta
                  Orangutan  taaaatatttcc-ta
                     Gibbon  taaagcatttcc-ta
                     Rhesus  taaaatatttcc-ta
        Crab-eating macaque  taaaatatttcc-ta
                     Baboon  t-aaatatttcc-ta
               Green monkey  taaaatatttcc-ta
                   Marmoset  taagatgtttcc-ta
            Squirrel monkey  taagatgtttcc-ta
                   Bushbaby  taagacatttcc-cc
         Chinese tree shrew  taaattagttcc-cc
                   Squirrel  taagatacttcc-c-
     Lesser Egyptian jerboa  taagatgtgtcc-cc
               Prairie vole  taagatgctccc-ca
            Chinese hamster  taagatgcccc--c-
             Golden hamster  taaggtgcccct-c-
                      Mouse  taaggtatctat-ca
                        Rat  taagatacatat-ca
             Naked mole-rat  taagatacttcc-tt
                 Guinea pig  taagatgcttcc-ta
                 Chinchilla  taagatacttcc-ta
           Brush-tailed rat  tgagatacttcc-ta
                     Rabbit  taagatatttcc-ca
                       Pika  taaaatatttcc-ca
                        Pig  taagatagttcc-ct
                     Alpaca  taagatatttcc-ca
             Bactrian camel  taagctatttcc-ca
                    Dolphin  taagataattcc-cc
               Killer whale  taagataattcc-cc
           Tibetan antelope  taagatagtacc-tc
                        Cow  taagatagtacc-tc
                      Sheep  taagatagtacc-tc
              Domestic goat  taagatagtacc-tc
                      Horse  taagatcttttc-ca
           White rhinoceros  taagatattttc-ta
                        Cat  taagatatttcc-ca
                        Dog  taagatatttcc-ca
                    Ferret   taagatatttcc-ca
                      Panda  taagatatttcc-ca
             Pacific walrus  taagatatttcc-ca
               Weddell seal  taaggtatttcc-ca
           Black flying-fox  taagatatttcc-cc
                    Megabat  taagatatttcc-cc
              Big brown bat  taagatagttcc-ca
       David's myotis (bat)  taagatacttcc-ca
                   Microbat  taagatatttcc-ca
                   Hedgehog  caggaaagttcc-ca
                      Shrew  gaagctggttcc-ca
            Star-nosed mole  taagatcttttc-cc
                   Elephant  taagatattttc-ca
        Cape elephant shrew  taagatacatac-tg
                    Manatee  taagatatgtcc-ca
           Cape golden mole  taagatatttcctcc
                     Tenrec  taaggtctttcc-cc
                   Aardvark  taagatatttcc-cc
                  Armadillo  caagatatttcc-cg
                    Opossum  ccagaaactctt-ta
                   Platypus  aaaggcagt------
            Tasmanian devil  ===============
         American alligator  ===============

Inserts between block 1 and 2 in window
B D                Opossum 425bp

Alignment block 2 of 118 in window, 140710065 - 140710303, 239 bps 
B D                   Human  aaataagatttaatgaagatgt---tactaaatt---ggagaattgctttca---ga--attgtacctca
B D                   Chimp  aaataagatttaatgaagatgt---tactaaatt---ggagaattgctttca---ga--attgtacctca
B D                 Gorilla  aaataagatttaatgaagatgt---tactaaatt---ggagaattgctttca---ga--attgtacctca
B D               Orangutan  aaataagatttaatgaacatgt---tactaaatt---ggagaattgctttca---ga--attgtacctca
B D                  Gibbon  aaataagatttaatgaagatgt---tactaaatt---ggagaattgctttca---ga--attgtacctca
B D                  Rhesus  aaataagatttaatgaagatgt---tactaaatt---ggaaaattgctttca---ga--attgtacctca
B D     Crab-eating macaque  aaataagatttaatgaagatgt---tactaaatt---ggaaaattgctttca---ga--attgtacctca
B D                  Baboon  aaataagatttaatgaagatgt---tactaaatt---ggaaaattgctttca---ga--attgtacctca
B D            Green monkey  aaataagatttaatgaagatgt---tacgaaatt---ggaaaattgctttca---ga--attgtacctca
B D                Marmoset  aaataagattttatgacgaagt---tactaaatt---ggaaaattgctttca---ga--attgtacctca
B D         Squirrel monkey  aaataagatttaatgatgaagt---tactaaatt---ggaaaattgctttca---ga--attgtacctca
B D                Bushbaby  aaataagatttacgaaagatgt---tactaaagt---gggaacttgccttca---ca--atcgtatctca
         Chinese tree shrew  aaataagatttaatgaagatgt---tattaaaat---gggaacttgccatca---gt--atggtatctca
B D                Squirrel  caataagattta-tgaagatat---cactaaaat---gggaaattgccttca---ga--aatgtatctca
     Lesser Egyptian jerboa  aagtaacatgtattgaagacgt---tacacaagg---g------------------------gtatctca
               Prairie vole  aaataagattttttgaaggtat---t----------------------------------------ctca
B D         Chinese hamster  aaataagatttattgaagatat---ta---aaat---g------------------------atatctca
             Golden hamster  aaataagatttattgaagatat---ta---aaat---g------------------------atacctta
B D                   Mouse  atacaagatttattgaagatat---ta---aaat---g------------------------atatttca
B D                     Rat  aaaaaagatttattgaagatat---t----aaat---g------------------------atatctca
B D          Naked mole-rat  aaagaagatgcagtagagatgt---tattgaaat---g------------------------agaaattg
B D              Guinea pig  aaataagatgtaatggaggtgt---aattaggat---g------------------------agaaattg
                 Chinchilla  caataagatgtaatggagatgt---attgaaaat---g------------------------agaaattg
           Brush-tailed rat  aaataagatgtaagggggatgt---aatgaaaat---g------------------------agaaatcg
B D                  Rabbit  aaataagattcaatgaagatgt---tacttaaat---gaaaaattgcattca---ga--atgatatctca
B D                    Pika  atgtaagaataaatgaacttgt---tagtaaaat---gaaaaattgtcttca---ga--atgatatctca
B D                     Pig  aaataggacttgttgaag-tgt---tattgaaa--------------------------------tatca
B D                  Alpaca  aactaggacttgatgtagatgc---tactgaaag---gagaaattgcattcg---ga--acggtgtctga
             Bactrian camel  aactaggacttgatgtaggtgc---tactgaaag---gagaaattgcattcg---ga--acggtgtctga
B D                 Dolphin  aaaggggacctgatgaagatat---tactgaaat---gagaaatggtgttcg---ga--atggtatctca
               Killer whale  aaaggggacctgatgaagatat---tactgaaat---gagaaatggtgttcg---ga--atggtatctca
           Tibetan antelope  aaagaggactcgatgaagatgt---tattgaaat---gagaaattgcgtttg---ga--atgctatggca
B D                     Cow  aaagaggactcgatgaagatgt---tattgaaat---gagacattgcgttgg---ga--atgctatggca
B D                   Sheep  aaagaggactcgttgaagatgt---tattgaaat---gagaaattgcgtttg---ga--atgctatggca
              Domestic goat  aaagaggactcgttgaagatgt---tattgaaat---gagaaattgcgtttg---ga--atgctatggca
B D                   Horse  aaataagacctgatgaagatgt---tactgaaat---gagaaattgcattcg---ga--acaggagctca
B D        White rhinoceros  aaataagacttgatgaagatgt---cactgaaat---gagaaattgctttca---ga--acagcatctca
B D                     Cat  acatatgacttgatgaagttgt---taccaagat---gagaaattgtgttcg---ga--acagtatctca
B D                     Dog  acctgtgacttgacgaagatgt---taccaggat---gagaaattgtactcg---ga--acagtatctca
B D                 Ferret   acataggacttgatgaagatgt---tacctagat---gagaaattgcactta---ga--acagtatctca
B D                   Panda  atgcatgacttgatggagatgt---taccaaaat---gagaaattgcactca---ga--acagtacctca
             Pacific walrus  gcgcatgacttgatgaagatgt---taccgaaat---gagaaagtgcactcg---ga--acagtagctca
               Weddell seal  acgcatgacttgatgaagatgt---tactaaaat---gagaaagtgcactcg---ga--acagtatctca
           Black flying-fox  aaataagagttgatgaagatgt---cactaaaat---gagaaattgcattca---ga--atggtatctca
B D                 Megabat  aaataagagttgatgaagatgt---cactaaaat---gagaaattgcattca---ga--atggtatctca
              Big brown bat  aaataagacttgacgaagatgt---cactaaaat---gagaaattgcattca---gg--atggtatttct
       David's myotis (bat)  aaataagacttgacgaagatgt---cactaaaat---gagaaattgaattcg---ga--acggtatttct
B D                Microbat  aaataagacttgacgaagatgt---cactaaaat---gagaaattgaattcg---ga--acggtatttct
B D                Hedgehog  aaatgagattcaatgaagatgt---gagggaaag---gagaaatgacattca---ga--atg-tacgtca
B D                   Shrew  aaataagatctgatgaagctgt---tact--act---tggaaattgccttca---gg--atg----gttc
            Star-nosed mole  aaataggatgtgatgaagatgt---tactaaaat---gggaaattgta----------------------
B D                Elephant  aaatcagatttgacagaaatgt---gactaaaat---ggaaaatgacattca---gaacacagtatctca
        Cape elephant shrew  aaataagctttgacagagatgctgagatgaaaat---tggaaattgctttcg---ga--acaatttttta
B D                 Manatee  aaataagatttgacaaaaatgt---gactaaaat---ggaaaattacattca---gaacacagtatctca
           Cape golden mole  aaataagcctaggcaaagatgt---gatttaaac---aggaaattacactca---ga--actctgtctca
B D                  Tenrec  aacgaagatttgacagagatg----gactaatgccgaggggggaaacgcttagctga--gcagtctttca
                   Aardvark  aaataagatt-gacaaagatgt---gatggaaat---gggatcttacactca---ga--gaggcatctag
B D               Armadillo  aaataagatttgacgaagttgt---tactgaaat---gggaaattgcattca---ga--atggtatctca
B D                Platypus  -gataaga-------aatcagc---tactgcact---aacagagtgaggtta--tgt--attattctttt
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D      American alligator  ======================================================================

                      Human  gct------------tta---c-----gatatttgtatttgacgtgat-gaaa---------tg--ggtt
                      Chimp  gct------------tta---t-----gatattt-----tgacgtgat-gaaa---------tg--ggtt
                    Gorilla  gct------------tta---t-----gatatttgtatttgacgtgat-gaaa---------tg--ggtt
                  Orangutan  gct------------tta---t-----gatatttgtatttgacgtgat-gaaa---------tg--ggtt
                     Gibbon  gct------------tta---t-----gatatttgtatttgacgtgat-gaaa---------tg--ggtt
                     Rhesus  gct------------tta---t-----gatatttgtatttgacgtgat-gaaa---------tg--ggtt
        Crab-eating macaque  gct------------tta---t-----gatatttgtatttgacgtgat-gaaa---------tg--ggtt
                     Baboon  gct------------tta---t-----gatatttgtatttgacgtgat-gaaa---------tg--ggtt
               Green monkey  gct------------tta---t-----gatatttgtatttgacgtgat-gaaa---------tg--ggtt
                   Marmoset  gtt------------tta---a-----gatatttggatttgatatgat-gaaa---------tg--ggtt
            Squirrel monkey  gct------------tta---a-----gatatttggatttgatatgat-gaaa---------tg--ggtt
                   Bushbaby  gct------------cga---------gatgtttagattagatgtgat-gtaa---------ga--ggtg
         Chinese tree shrew  gct------------tta---t-----gatgtttggattagacttgat-gaaa---------ta--gatc
                   Squirrel  gct------------ct-----------atgtttggcttaaacatgat-gaaa---------tg-----t
     Lesser Egyptian jerboa  ggt------------tta---c-----gatgtttgaattagact--------------------------
               Prairie vole  gct------------tta---t-----gatgtttgaattaggcatgat-gaca---------tgatagtt
            Chinese hamster  gct------------tta---t-----gatgtttgaattagacataat-gaaa---------tgatagtt
             Golden hamster  gct------------tta---t-----gatgtttgaattagacataat-gaaa---------tgatactt
                      Mouse  gct------------tta---t-----gatgtttgaattagacataat-gaaa---------tgatagtt
                        Rat  gct------------gta---t-----gatgtttgaattatacgtaat-gaaa---------tgatagct
             Naked mole-rat  gct------------ttagctt-----catgtttg-----------------------------------
                 Guinea pig  cct------------tcagcgt-----catgtttggattagacgcg-----aa---------tg--ggtt
                 Chinchilla  cct------------tcagttt-----catgtttggattagacgcgaa-gaaa---------tg--ggtt
           Brush-tailed rat  ccg------------ttagcct-----catgtttggattaggcg-gaa-gaaa---------tg--ggtt
                     Rabbit  gcc------------taa---t-----gatgtttggattagatgtgac--aaa---------tg--ggtt
                       Pika  gcc------------taa---c-----gatgtttgaattaaatgtgac--aga---------tg--ggtt
                        Pig  gct------------tta---t-----gatgtttgcatgaaatgtgat-gaaa---------tg--ggtg
                     Alpaca  gct------------gtg---c-----gatgtttgcattagaggtgat-gaaa---------tg--ggtg
             Bactrian camel  gct------------gtg---c-----gatgtttgcattagaggtgat-gaaa---------tg--ggtg
                    Dolphin  gct------------tta---c-----gatgtttgcattagatgtgat-gaac---------tg--g-tg
               Killer whale  gct------------tta---c-----gatgtttgcattagatgtgat-gaaa---------tg--g-tg
           Tibetan antelope  gct------------tta---g-----gatgtttgcattagatgtgat-gaaa---------tg--gatg
                        Cow  gct------------tta---g-----gatgtttgcattagatgtgat-gaaa---------tg--gatg
                      Sheep  gct------------tta---g-----gatgtttgcattagatgtgat-gaaa---------tg--gatg
              Domestic goat  gct------------tta---g-----gatgtttgcattagatgtgat-gaaa---------tg--gatg
                      Horse  gct------------tt----c-----aatgtttacatcagatgtgtt-gaaa---------tg--agtt
           White rhinoceros  gct------------tta---c-----gatgtttacatcacatgtgat-gaaa---------tg--agtt
                        Cat  gct------------tta---t-----gatgtttggatgaggcttgag-aaaa---------tg--ggtt
                        Dog  gtc------------tta---c-----gatgtttggattagacttgat-agga---------tg--ggtt
                    Ferret   gcc------------tta---c-----agtgtttgaattagacttgat-agaa---------tg--ggtt
                      Panda  gcc------------tta--ca-----aatggttgaattagacttgat-agaa---------tg--ggtt
             Pacific walrus  gcc------------tta---g-----gatgtttgaattagacttgat-agaa---------tg--ggtt
               Weddell seal  gcc------------tta---t-----gatgtttgaattagacttgat-agaa---------tg--ggtt
           Black flying-fox  gct------------tta---c-----gatgtttggattagacatgat-gaaa---------tg--ggtt
                    Megabat  gct------------tta---c-----gatgtttggattagacgtgat-gaaa---------tg--ggtt
              Big brown bat  gct------------tta---c-----tatgtttggattagacttgacaaaaa---------tg--ggtt
       David's myotis (bat)  gct------------tta---c-----tatgtttggattagacctgacaaaaa---------tg--ggtt
                   Microbat  gct------------tta---c-----tatgtttggattagacttgacaaaaa---------tg--ggtt
                   Hedgehog  gttt-----------tta---t-----gacgtttggatcagagatggt-g--------------------
                      Shrew  gttggtgtgtcagattta---c-----gctgttgagcttaaacatgat-ggaa---------tg--ggct
            Star-nosed mole  ---------------tta---c-----gatgtttgcactagatatgat-ggag---------tg--ggtt
                   Elephant  gct------------tta---t-----gatatttggattagatgt------------------a--gatt
        Cape elephant shrew  gct------------ttg---t-----gatacttggacgagatgtgtg-gaag---------cg--gatc
                    Manatee  gct------------tta---t-----gatatttggattagacgt------------------g--gatt
           Cape golden mole  gct------------tta---t-----actacttggattcaatatgtt-gaag---------ta--gatt
                     Tenrec  gct------------tta---g-----gatatgtggctt------------ag---------aa--ggtg
                   Aardvark  gct------------ttc---t-----gctatttggatcagccgtgct-gaag---------gg--gatt
                  Armadillo  gat------------tta---c-----gatgtttggattggacatgtt-gaaa---------tg--aatt
                   Platypus  tcc------------tta---cataaagctgtgtgcgtcaattttatt-gtgagaaagtgtttg--ggtt
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
         American alligator  ======================================================================

                      Human  atga-------ttcaaga-tg-ttctcaaacctggtttatttt-ctc-agtg----ct-----------g
                      Chimp  atga-------ttcaaga-tg-ttctcaaacctggtttatttt-ctc-agtg----ct-----------g
                    Gorilla  atga-------ttcaaga-tg-ttctcaaacctggtttatttt-ctc-agtg----ct-----------g
                  Orangutan  atga-------ttcaaga-cg-ttctcaaacctggtttatttt-ctc-agtg----ct-----------g
                     Gibbon  atga-------ttcaaga-tg-ttctcaaacctggtttatttt-ctc-agtg----ct-----------g
                     Rhesus  atga-------ttcaaga-tg-ttctcaaacctggtttatctt-ctc-agtg----ct-----------g
        Crab-eating macaque  atga-------ttcaaga-tg-ttctcaaacctggtttatctt-ctc-agtg----ct-----------g
                     Baboon  atga-------ttcaaga-tg-ttctcaaacctggtttatttt-ctc-agtg----cg-----------g
               Green monkey  aaga-------ttcaaga-tg-ttttcaaacctggtttatttt-ctc-agtg----ct-----------g
                   Marmoset  ataa-------ttgaaga-tg-ttctcaaatctggtttatttt-ctc-agtg----ct-----------g
            Squirrel monkey  atga-------ttcaaga-tg-ttctcaaatctggtttatttt-ctg-agtg----ct-----------g
                   Bushbaby  atgg-------ctcaaga-ca-ttttcagacctgctttatttt-ctc-actg----ta-----------g
         Chinese tree shrew  atat-------ttcagga-tgcctctcaggtgtggtttctttt-ctt-agtg----tg-----------g
                   Squirrel  gttacata----tcaaga-tg-ttgtcagatctgctttatttt-ttc-agtg----tg-----------t
     Lesser Egyptian jerboa  -------------------tg-tttccagatccagtttccttt-ctc-tgtg----tg-----------t
               Prairie vole  ttgattcattattcaggcttt-tttttggatatggtttattttattt-c---------------------
            Chinese hamster  ttcattcattattcaagc-tg-ttcttggatgtggcttttttttctt-gctg----ta-----------g
             Golden hamster  ttcattcatttttcaagc-tg-ttcttggatttggtttgtttt---------------------------
                      Mouse  atgactcagtattcaagg-ag-ttctcggatctggtttgtttt-ctt-ggta----tg-----------t
                        Rat  atgattcagtattcaggg-gg-ttctcagatctggtttgttat-ctt-ggtg----tg-----------t
             Naked mole-rat  --------------------------------------gtttt-ttt-agtg----tg-----------t
                 Guinea pig  acgg-------ttcaaga-tg-ttctcagat-----ctgtttc-ctt-agcg----ag-----------t
                 Chinchilla  acag----aggttcaaga-tg-ttctcagat-----ctgcttt-cttaagtg----ag-----------t
           Brush-tailed rat  ccga--------------------------------cagcttt-ctt-agtg----ag-----------t
                     Rabbit  at-------gatt------------------cctgtttcttt--ctc-agta----tg-----------t
                       Pika  atag-----gattcaacg-tg-ttctcaaaccttgtgtctttc-ctc-agta----tg-----------g
                        Pig  acaa-------gtcatga-tg-ttctcagatctgatttccttt-cac-agta----tg-----------g
                     Alpaca  acga-------ctcacga-gg-ttctccgatctgattgccttt-cac-agta----tg-----------g
             Bactrian camel  acga-------ctcacga-gg-ttctcctatctgattgccttt-cac-agta----tg-----------g
                    Dolphin  acaa-------ttcctga-tg-ttctcagatctgatttccttt-cac-agta----tg-----------g
               Killer whale  acaa-------ttcatga-tg-ttctcagatctgatttccttt-cac-agta----tg-----------g
           Tibetan antelope  acga-------ttcacaa-tg-ttctaagatctgatttccttt-cac-ggta----tg-----------g
                        Cow  acaa-------ttcacaa-tg-ttctaagatctgatttccttt-cac-ggta----tg-----------g
                      Sheep  acga-------tccacaa-tg-ttctaagatctgatttccttt-cac-ggta----tg-----------g
              Domestic goat  acga-------tccacaa-tg-ttctaagatctgatttccttt-cac-ggta----tg-----------g
                      Horse  acga-------ttcaagg-tg-ttcttagatctgatttccttt-cac-agtg----tg-----------g
           White rhinoceros  acga-------ttcaaga-tg-ttcttagatctgatttccttt-cac-agta----tg-----------g
                        Cat  acga-------ttcaaga-tg-ttctcagatctgagttcctgt-ccc-agtg----tg-----------g
                        Dog  atga-------ttgaaga-tg-ttctcagatctgagttcctgt-cct-tgta----tg-----------g
                    Ferret   acga-------ttgaaga-tg-ttctcagatctgagctcctgt-ccc-cgta----tg-----------g
                      Panda  acga-------ttgaaga-tg-ttctcagatctaagttcctat-gcc-cgta----tg-----------g
             Pacific walrus  acga-------ttgaaaa-tg-ttctcagatctgagttcctgt-ccc-cata----tg-----------g
               Weddell seal  acga-------ttgaaaa-tg-tgctcagatctgagttcctgt-ccc-cata----tg-----------g
           Black flying-fox  acga-------ttcaaga-ta-ctctcagacctgatttccctt-cac-agtg----tg-----------g
                    Megabat  acga-------ttcaaga-ta-atctcagacctgatttccctt-cac-agtg----tg-----------g
              Big brown bat  gtga-------ttctaga-tg-ttctcagatctgatttccttt-ccc-agtg----tg-----------g
       David's myotis (bat)  gtga-------ttctaga-tg-ttctcagatctgatttccctt-cac-agtg----tg-----------g
                   Microbat  gtga-------ttctaga-tg-ttctcagatctgatttccttt-cac-agtg----tg-----------g
                   Hedgehog  --tt-------ttcagga-tc------aaatat-ttttcctcc-cgc-agtg----ta-----------g
                      Shrew  ctga-------tttaaga-tg-tt---aggtct-gtttcttct-cgc-----------------------
            Star-nosed mole  ccga-------ctcaaga-tg-ttctcagatctcattttttcc-cac-actg----tg-----------g
                   Elephant  aaga-------ttcaaga-tg-ctctcaaatctggttgctttt-ctc-agcgagcgtg-----------g
        Cape elephant shrew  ccaa-------ttcaaga-tg-ctgtcagatttggtttctttt-ctc-tctgagtgtg---------aaa
                    Manatee  aaga-------ttcaaga-tg-ctctcaaatctggtttctttt-ctc-agcgagcgtg-----------g
           Cape golden mole  aaga-------tgcaaga-tg-cccttgaaactggtttctt-------agtgtgtgtgtgtgtggggggg
                     Tenrec  ttcc-------catgagt-gg-ccctctgatcaggtttctttc-ctc-agtaagcctg-----aggagag
                   Aardvark  aaga-------ttcaaga-tg-ctcacaggtctggtttctttt-ctc-agtgtacgtg-----------g
                  Armadillo  aaga-------ttcaaga-ta-ctttcagagctggtttctatt-ctc-agtgaatgtg-----------g
                   Platypus  caga-------tttataa-ca---------------------c-aac-agac----ca-----------a
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
         American alligator  ======================================================================

                      Human  ggaga------------------------------gcataagaaa-a-atatta-ctttgcaatgcagaa
                      Chimp  ggaga------------------------------gcataagaaa-a-atatta-ctttgcaatgcagaa
                    Gorilla  ggaaa------------------------------gcataagaaa-a-acatta-ctttgcaatgcagaa
                  Orangutan  ggaga------------------------------gcataagaaa-a-atatta-ctttgcaatgcagaa
                     Gibbon  ggaga------------------------------gcataagaaa-a-atatta-ctttgcaatgcagaa
                     Rhesus  ggaga------------------------------ccataagaaa-a-a---ta-ttttgcaatgcagga
        Crab-eating macaque  ggaga------------------------------ccataagaaa-a-a---ta-ttttgcaatgcagga
                     Baboon  ggaga------------------------------ccataagaaa-a-a---ta-ttttgcaatgcagga
               Green monkey  ggaga------------------------------ccataagaaa-a-atgtta-ttttgcaatgcagga
                   Marmoset  ggaga------------------------------gcataataac-a-atatta-ttttgcaatggagaa
            Squirrel monkey  ggaga------------------------------gcataagaac-a-atattg-ttttgcaatggagaa
                   Bushbaby  aaaga------------------------------gcctgacaaa-c-attttagttttgcaatggagca
         Chinese tree shrew  ggaga------------------------------gcatgagaaa-a-atatga-ttttgccatggagaa
                   Squirrel  agaga------------------------------gcatgagaaa-a-ata----ttttgcactggagga
     Lesser Egyptian jerboa  ggaga------------------------------tcatgaggag-a-atg----ttttgcaatgaaatg
               Prairie vole  ------------------------------------tgtggggag-a-ata----ttttgcattggagga
            Chinese hamster  agaga------------------------------acatgagga--a-ata----ttttgcagtggagaa
             Golden hamster  ------------------------------------cttgagga--a-gta----ttttgcagtggagga
                      Mouse  ggtga------------------------------acatacggaa-a-ata----ttttgcagtggagga
                        Rat  gg-gg------------------------------acatgcagaa-a-ata----ttttgcagtggagga
             Naked mole-rat  gg----------------------------------catgagaga-a-atatta-ttttgcgatggagaa
                 Guinea pig  gg----------------------------------catgagaga-a-ttatta-ttttgcgatggagaa
                 Chinchilla  gg----------------------------------catgacaga-a-atatga-ttttgcgatggagaa
           Brush-tailed rat  gg----------------------------------catgagaga-a-atattatttttgcaatggatag
                     Rabbit  ggaaatattattttgtaatgaagaaatattattttgcatga-aga-a-atatta-ttttgtaatagataa
                       Pika  ggagg------------------------------gcatgagagc-a-atatta-ttttgtaatgtgtaa
                        Pig  acaga------------------------------gcagggggga-a-atgtta-ttttgcaatggggaa
                     Alpaca  agaga------------------------------gcatgagaaa-a-atgtta-ttttgcaatggggaa
             Bactrian camel  agaga------------------------------gcatgagaaa-a-atgtta-ttttgcaatggggaa
                    Dolphin  agaga------------------------------gcatgagaaa-a-atgttg-ttttgcaatggggaa
               Killer whale  agaga------------------------------gcatgagaaa-a-atgttg-ttttgcaatggggaa
           Tibetan antelope  agaga------------------------------gcatgagaaa-a-atgcta-ttttgcaatggagaa
                        Cow  agaga------------------------------gcatgagaaa-a-atgtta-ttttgcaatggggaa
                      Sheep  agaga------------------------------gcatgagaaa-a-atgtta-ttttgcaatggagaa
              Domestic goat  agaga------------------------------gcatgagaaa-a-ttgtta-ttttgcaatggagaa
                      Horse  agaga------------------------------acatgaggaa-a-atgtta-ctttgcaatggagaa
           White rhinoceros  agaga------------------------------acatgagaaa-a-atgtta-ttttgcaatggagaa
                        Cat  aaaga------------------------------gtatgagaaa-a-ctgtta-cttggcaatgg---g
                        Dog  agaga------------------------------gcatgagaaa-a-ctgtta-ctttgcaatgg---g
                    Ferret   agaga------------------------------gcatgacaaa-a-ctgtga-ctttgcaatgg---g
                      Panda  agaga------------------------------gcatgagaaa-a-ctgtta-ctttgcaatgg---t
             Pacific walrus  agaga------------------------------gcatgagaaa-a-ctgtta-ctttgcaatgg---g
               Weddell seal  agaga------------------------------gcatgagaaa-a-ctgtta-ctttgcaatgg---g
           Black flying-fox  agagt------------------------------gtatgagaaaaa-atgtta-ttttgcaatagagaa
                    Megabat  agagt------------------------------gtatgagaaaaa-atgtta-ttttgcaatagagaa
              Big brown bat  agaaa------------------------------gcaggagaaaca-atgtta-ttttgcaatgaggaa
       David's myotis (bat)  agaaa------------------------------gcacgagaaaca-atgtta-ttttgcaatgaggaa
                   Microbat  agaaa------------------------------gcaggagaaaca-atgtta-ttttgcaatgaggaa
                   Hedgehog  agaga------------------------------gcatgggga--a-atgttg-ttttgcaacaggagg
                      Shrew  ----a------------------------------gcataagaa--a-atgtca-tattggaaccgggag
            Star-nosed mole  agaga------------------------------gcaggagga--a-gtgctc-tgtggaaa--gggag
                   Elephant  ggaga------------------------------gcaggagaaa-a-atgtta-ttttgcaatggagaa
        Cape elephant shrew  gaata------------------------------aaggggggag-g-ggacta-ctttgcaatggagta
                    Manatee  ggaga------------------------------gcatgagaaa-a-acgtta-ctttgcaatggagaa
           Cape golden mole  ggaga------------------------------gtgtgagaaa-acatggtc-ttttgcaatggagaa
                     Tenrec  cacga------------------------------gggagagaaa-a-atgtta-ttttgcaatggagac
                   Aardvark  ggaga------------------------------gcatgagaaa-a-atgttc-ttttgcaagggagga
                  Armadillo  aaaga------------------------------gcat--aaaa-a-atgttc-ttttgcaggggagaa
                   Platypus  ggaga-----------------------------------------a-atataa-attgaataagaaaac
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
         American alligator  ======================================================================

                      Human  aaggatac-------g------atgcct----------c------------a--------t--------t
                      Chimp  aaggatac-------g------atgcct----------c------------a--------t--------t
                    Gorilla  aaggatac-------g------atgcct----------c------------a--------t--------t
                  Orangutan  aaggatac-------g------atgcct----------c------------a--------t--------t
                     Gibbon  aaggatac-------g------atgcct----------c------------a--------t--------t
                     Rhesus  aaggatac-------g------atgcct----------t------------a-----------------t
        Crab-eating macaque  aaggatac-------g------atgcct----------t------------a-----------------t
                     Baboon  aaggatac-------g------atgcct----------t------------a-----------------t
               Green monkey  aaggatac-------g------atgcct----------t------------a-----------------t
                   Marmoset  aaggatat-------g------atgcgt----------c------------a--------t--------t
            Squirrel monkey  gaggatat-------g------atgcgt----------c------------a--------t--------t
                   Bushbaby  aaacggct-------c------attttt----------c------------a--------t--------t
         Chinese tree shrew  aaggctac-------gtatgctactctt----------t------------t--------t--------t
                   Squirrel  aaggatgcaatgatat------gtcttt----------t------------t--------tc-------t
     Lesser Egyptian jerboa  aaagacac-------t------agaccc----------c------------a--------ct-------t
               Prairie vole  taggatag-------c------gtactc----------t------------a--------ct-------t
            Chinese hamster  taggattc-------t------gtactc----------t------------a--------ct-------t
             Golden hamster  taggattc-------t------gtactc----------t------------a--------ct-------t
                      Mouse  taggctac-------t------gtattc----------c------------a--------ct-------t
                        Rat  taggatag-------t------gtattc----------c------------a--------tt-------t
             Naked mole-rat  aaggatac-------t-----------------------------------a--------tt-------c
                 Guinea pig  aaagatac-------g------gtgcct----------c---------ctca--------tg-------c
                 Chinchilla  caggatac-------t------gtgcct----------c---------ctca--------tg-------c
           Brush-tailed rat  aagaatac-------t------ttgctc----------c---------ctca--------cg-------c
                     Rabbit  tagaatac-------t------atgcct----------t------------a--------tt-------t
                       Pika  -aaaataa-------c------atgcct----------c------------a--------tt-------t
                        Pig  aagaatac-------c------atgcct----------c------------a--------gt-------t
                     Alpaca  aagaatac-------c------aggcct----------c------------a---------t-------t
             Bactrian camel  aagaatac-------c------aggcct----------c------------a-----------------t
                    Dolphin  aagaatac-------c------atgcct----------c------------at-------tt-------t
               Killer whale  aagaatac-------c------atgcct----------c------------at-------tt-------t
           Tibetan antelope  aagaatac-------c------atgcct----------c------------a---------t-------t
                        Cow  aaaaatac-------c------atggct----------c------------a---------t-------t
                      Sheep  aagaatac-------c------atgcct----------c------------a--------tt-------t
              Domestic goat  aagaatac-------c------atgcct----------c------------a---------t-------t
                      Horse  aaggatac-------t------atgcct----------a------------a---------t-------t
           White rhinoceros  aaggataa-------t------atgcct----------c------------at-------tt-------t
                        Cat  aaggatac-------c------atgcct----------c------------at-------tt-------t
                        Dog  aaggatac-------c------atgcct----------c------------at-------tt-------t
                    Ferret   aaggatac-------c------atacct----------c------------at-------tt-------t
                      Panda  aaggatac-------c------atacct----------c---------------------tt-------t
             Pacific walrus  aaggatac-------c------atacct----------c------------at-------tt-------t
               Weddell seal  aaggatac-------c------atacct----------c------------at-------tt-------t
           Black flying-fox  aaagatac-------c------attcct----------tgttttttgttttgt-------tttgttttgt
                    Megabat  aaagacac-------c------attcct----------cgttttttgttttgt-------tt-------t
              Big brown bat  aatgatat-------c------atttct----------t-------------------------------
       David's myotis (bat)  aaggatat-------t------gtttct----------t---------------------tc-------t
                   Microbat  aaggatat-------t------gtttct----------t---------------------tc--------
                   Hedgehog  aagagtgt-------c------atg---------------------------------tatt-------t
                      Shrew  aaggatac-------c------atgcct----------c------------atccttttaat-------t
            Star-nosed mole  aggggtac-------c------atgcct----------t------------acctgtataac-------a
                   Elephant  aaggatac-------c------atatcttactgtttttt------------t--------tt-------t
        Cape elephant shrew  aga-----------------------------------t------------t--------tt-------t
                    Manatee  aaggatgc-------c------atgtct----------t------------a--------ct-------t
           Cape golden mole  gacaccat-------a------acttac----------t------------t--------tt--------
                     Tenrec  gaggatat-------a------ccgtat----------t------------t--------ct-------t
                   Aardvark  aaggatac-------t------gtatcttacttat---t------------a--------tt-------c
                  Armadillo  aaggatac-------t------atgcct----------c------------c--------tt-------a
                   Platypus  aataaaac-------t------agccct----------t------------a--------c--------a
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
         American alligator  ======================================================================

                      Human  ttt---tta----aat---------------------t--aagaa--------agtcgtgtga----c--
                      Chimp  ttt---tta----aat---------------------t--aagaa--------agtcgtgtga----c--
                    Gorilla  ttt---tta----aat---------------------t--aagaa--------agtcgtgtga----c--
                  Orangutan  ttt---tta----aat---------------------t--cagaa--------agtcgtgtga----c--
                     Gibbon  ttt---tta----aat---------------------t--aagaa--------agtcgtgtga----c--
                     Rhesus  ttt---tta----aat---------------------t--aagaa--------agtcgtgtga----t--
        Crab-eating macaque  ttt---tta----aat---------------------t--aagaa--------agtcgtgtga----c--
                     Baboon  ttt---tta----aat---------------------t--aagaa--------agtcgtgtga----c--
               Green monkey  ttt---tta----aat---------------------t--aagaa--------agtcgtgtga----c--
                   Marmoset  ttt---tag----aat---------------------t--aagaa--------agatgtgtga----c--
            Squirrel monkey  ttt---tag----aat---------------------t--aagaa--------agatgtatga----c--
                   Bushbaby  ctt---tta----aatgtatttattttaattggaaaat--aataactgtagtgattcatgtgg----cac
         Chinese tree shrew  ttt---tct----tat---------------------g--aagaa--------catcgtatga----c--
                   Squirrel  ttt---ttt----aat---------------------t--aagaa--------aattgtgtga----c--
     Lesser Egyptian jerboa  ttt---tgt----aat---------------------t--aagaa--------tattgt---g----t--
               Prairie vole  gtt---ttt----aat---------------------t--aagaa--------gatggtgcgg----t--
            Chinese hamster  gtt---ttt----aat---------------------t--aagaa--------aatggtgc-a----t--
             Golden hamster  gtt---ttt----aat---------------------t--aagaa--------gatggtgcgg----g--
                      Mouse  gct---ttt----aat---------------------t--aagaa--------gatggtgccg----t--
                        Rat  gct---ttt----aat---------------------t--aagaa--------gatggtgccg----t--
             Naked mole-rat  ttc---tta----aat---------------------t--aagaa--------aattgtgtga----c--
                 Guinea pig  ttc---tta----aat---------------------t--aagaa--------aattgtatga----t--
                 Chinchilla  ttc---ttg----aat---------------------t--aagaa--------aattgcgtgc----c--
           Brush-tailed rat  tt----tta----gat---------------------t--aagaa--------aattatgtga----c--
                     Rabbit  ctt---tat----aat---------------------t--aagaa--------aattgtatga----c--
                       Pika  cat---ttt----aat---------------------t--aagga--------aattggatga----c--
                        Pig  ttt---ttt----aat---------------------t--aagaa--------aatcatgtga----c--
                     Alpaca  ttt---gta----aat---------------------t--aagaa--------aatcatgtga----c--
             Bactrian camel  ttt---gta----aat---------------------t--aagaa--------aatcatgtga----c--
                    Dolphin  ttt---ctt----aat---------------------t--aagaa--------aatcatgtga----c--
               Killer whale  ttt---ctt----aat---------------------t--aagaa--------aatcatgtga----c--
           Tibetan antelope  ttt---tta----aat---------------------t--aagaa--------aatcatgtga----c--
                        Cow  ttt---ttt----aat---------------------t--aagaa--------aatcatgtga----c--
                      Sheep  ttt---ttt----aat---------------------t--aagaa--------aatcatgtga----c--
              Domestic goat  ttt---ttt----aat---------------------t--aagaa--------aatcatgtga----c--
                      Horse  ttt---tt-----aat---------------------t--aaaaa--------aatcatgtga----c--
           White rhinoceros  ttt---tt-----aat---------------------t--aaaaa--------aatcatgcga----c--
                        Cat  ttt---tttttttaat---------------------t--aagaa--------aatcatgtga----c--
                        Dog  ttt---ttt----aat---------------------t--aagaa--------aatcatgtga----c--
                    Ferret   ttt---tttta--aat---------------------g--aagaa--------aatcatgtga----c--
                      Panda  ttt---ttttt--aat---------------------g--aagaa--------aatcatgtga----c--
             Pacific walrus  ttt---ttttt--aat---------------------g--aagaa--------aatcatgtga----c--
               Weddell seal  ttt---ttttttaagt---------------------g--aagaa--------aatcatgtga----c--
           Black flying-fox  ttt---ttt----aat---------------------t--aagaa--------aataatgtga----c--
                    Megabat  ttt---ttt----aat---------------------t--aagaa--------aataatgtga----c--
              Big brown bat  ttt---ttt----aat---------------------t--aataa--------aatgatgtga----c--
       David's myotis (bat)  ttt---ttt----aat---------------------t--aagaa--------aatgatgtca----c--
                   Microbat  ttt---ttt----aat---------------------taaaagaa--------aatgatgtga----c--
                   Hedgehog  ttt---ttt----aat---------------------t--gggga--------aatcttgtgactgtc--
                      Shrew  ttt---tcg----aat---------------------t--cagaa--------aatcatgtgactgtc--
            Star-nosed mole  tt------------------------------------------a--------aggcaggcagatgac--
                   Elephant  ttt---cctta--aat---------------------t--aagca--------aatcatgtga----c--
        Cape elephant shrew  ttt---taaag--aat---------------------a--aaatc--------aggcccatgt----c--
                    Manatee  ttt---taaaa--aat---------------------t--aagca--------aatcatgtga----c--
           Cape golden mole  ------gaaaa--cat---------------------t--aggca--------cattgtgtga----c--
                     Tenrec  tttttaaaaaa--aat---------------------t--aagca--------aatcaagcga----c--
                   Aardvark  ttt---tttta--aat---------------------g--aagca--------aatcgtgtga----c--
                  Armadillo  ttt-------a--aat---------------------t--aagaa--------aattgtgtca----t--
                   Platypus  cag---taa----aat---------------------t--a---a--------aatcacgag--------
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
         American alligator  ======================================================================

                      Human  ---gggatgtct-gtacta--g
                      Chimp  ---gggatgtct-gtacta--g
                    Gorilla  ---gggatgtct-gtacta--g
                  Orangutan  ---gggatgtct-gtacta--g
                     Gibbon  ---gggatgtct-gtacta--g
                     Rhesus  ---gggatgtct-gtacta--g
        Crab-eating macaque  ---gggatgtct-gtacta--g
                     Baboon  ---gggatgtct-gtacta--g
               Green monkey  ---gggatgtct-gtacta--g
                   Marmoset  ---tggatgtct-atacta--g
            Squirrel monkey  ---tgaatgtct-gtacta--g
                   Bushbaby  atagtgatgttt-tgatat--c
         Chinese tree shrew  ---tggccgtct-gtactg--g
                   Squirrel  ---gagctgttt-gtatgg--g
     Lesser Egyptian jerboa  ---gatatgtct-gtgtgg--g
               Prairie vole  ---gacatgtct-gcgtag--g
            Chinese hamster  ---gacatgtct-gcgtag--g
             Golden hamster  ---gacatgtct-gcgcag--g
                      Mouse  ---gacatgttt-gtatag--g
                        Rat  ---gacatgtct-gcatag--g
             Naked mole-rat  ---aaaatatct-atatgg--g
                 Guinea pig  --------atct-gtgtgg--g
                 Chinchilla  --agagatatct-gtatgg--g
           Brush-tailed rat  ---ggggtacct-gt-tag--g
                     Rabbit  ---ttgatatct-gtatgg--g
                       Pika  ---ttcatatgt-gttttg--g
                        Pig  ---tggatgtct-gtacag--g
                     Alpaca  ---tggatgtct-gcacaggag
             Bactrian camel  ---tggatgtct-gcacaggag
                    Dolphin  ---tggatgtct-gtacag--g
               Killer whale  ---tggatgtct-gtacag--g
           Tibetan antelope  ---tgcatgtct-gtacag--g
                        Cow  ---tagatgtct-gtacag--g
                      Sheep  ---tggatgtct-gtacag--g
              Domestic goat  ---tggatgtct-gtacag--g
                      Horse  ---tggatgtct-gtacag--g
           White rhinoceros  ---tggatgtct-gtacag--g
                        Cat  ---tggatgtct-gtacag--g
                        Dog  ---tggatgtct-gtacag--g
                    Ferret   ---tggatgtct-gtacag--g
                      Panda  ---tggatgtct-gtacag--g
             Pacific walrus  ---tggatatct-gtacag--g
               Weddell seal  ---tggatgtct-gtacag--g
           Black flying-fox  ---tggatgtct-gtatag--g
                    Megabat  ---tggatgtct-gtatag--g
              Big brown bat  ---cggatatat-gtacaa--g
       David's myotis (bat)  ---tggatatct-gtacaa--g
                   Microbat  ---tggatatct-gtacaa--g
                   Hedgehog  ---tgattgtct-gt--aa--g
                      Shrew  ---tgaatgtct-gtacag--g
            Star-nosed mole  ---tgggtacct-gcacag--g
                   Elephant  ---tgaatgctt-gtactg--g
        Cape elephant shrew  ---tg------t-gccctg--a
                    Manatee  ---tgaatgttt-gtactg--g
           Cape golden mole  ---tg-atgctttatattg--t
                     Tenrec  -------tgctt----------
                   Aardvark  -------tgttt-gtactg--g
                  Armadillo  ----gaattctt-ggaata--g
                   Platypus  ----------------------
            Tasmanian devil  ======================
                    Opossum  ======================
         American alligator  ======================

Alignment block 3 of 118 in window, 140710304 - 140710475, 172 bps 
B D                   Human  agagaaaatg---aggaagag--ggcagtttg----taataatgttcagattgattgcttcatgt--gag
B D                   Chimp  agagaaaatg---aggaagag--ggcagtttg----taataatgttcagattgattgcttcatgt--gag
B D                 Gorilla  agagaaaatg---aggaagag--ggcagtttg----taataatgttcagattgattgcttcatgt--gag
B D               Orangutan  agagaaaatg---aggaagag--ggcagtttg----taataatgttcagattgattgcttcatgt--gag
B D                  Gibbon  agagaaaatg---aggaagag--ggcagtttg----taataatgttcagattgattgcttcatgt--gag
B D                  Rhesus  a-aaaaaatg---aggaagag--ggcagtttg----taataatgttcagactgattgcttcatgt--gag
B D     Crab-eating macaque  a-aaaaaatg---aggaagag--ggcagtttg----taataatgttcagactgattgcttcatgt--gag
B D                  Baboon  a-aaaaaatg---aggaagag--ggcagtttg----taataatgttcagactgattgcttcatgt--gag
B D            Green monkey  agaaaaaatg---aggaaggg--ggcagcttg----taataatgttcagattgattgcttcatgt--gag
B D                Marmoset  agagaaaata---aggaag-g--ggcagtttg----taataacattcagattgattgcttcatgt--gag
B D         Squirrel monkey  agagaaaatg---aggaa--g--ggcactttg----taataacgttcagattgattgcttcatgt--gag
B D                Bushbaby  atataaaatg-------------------tag----tgctgatgtttgtactggaga--gaatgt--gag
         Chinese tree shrew  --agaaaata---aggcgaaa--gacagcctg----taataatattcagatggattacttcatgt--gag
B D                Squirrel  agagagaatg---agggagag--ggaagcctg----taataacattaagattgattgcttcatgt--gag
     Lesser Egyptian jerboa  aaagaaaatg---acgaagag--tgcagcaag----taatattattaatatggattgcttcatat--gag
               Prairie vole  aaaggaaat------gaagag--ggcagactg----taataatattacgactggttgctttgtag--gag
B D         Chinese hamster  aaaggaaat------caagag--ggcagcctg----taataatattaagacggcttgttttgtgg--gag
             Golden hamster  aaaggaaat------gaagag--ggcagactg----taacaatattaagactgtttgctttgtag--aag
B D                   Mouse  aaaggaaat------gaagag--ggcagactg----taataatattaagactggttgctttgtag--gag
B D                     Rat  aaagg-aat------gaaaaa--ggcagactg----gaataatattaagactggttgctttgtag--gaa
B D          Naked mole-rat  agagaacgca---agaaagag--ggcagcctg----taataatagtaagagcgattgcttaa--------
B D              Guinea pig  agggaaaatg---agaaagag--ggcagcctg----taa------------cgatttcttcacgt--gag
                 Chinchilla  aaagaaaacg---aggaagag--ggcagcctg----taataatattaagagcgattgctacatgt--gag
           Brush-tailed rat  acataaaatg---aagaagag--ggcagcagg----taataattttaagagcgattgcttcatat--gag
B D                  Rabbit  aaagaaaatg---agggaaag--agcagtcta----tgatagtattta-acagagtgcttcatgt--gag
B D                    Pika  aaagaaaatg---aggaagag--agtagtttg----caagaatactcaggttgattgcttcatgt--gag
B D                     Pig  agagaaaatg---aggagga---ggcagcctg----taa---tgttcagattaattgcttcacgt--gag
B D                  Alpaca  agagaaaatg---aggag-----ggcagcctg----taa-----ttcagattaattgcttcacgt--gag
             Bactrian camel  agagaaaatg---aggag-----ggcagcctg----taa-----ttcagattaattgcttcacgt--gag
B D                 Dolphin  agagaaaatg---aggag-----ggca-gctg----taa---tgttcagattaattgcttcacgt--gag
               Killer whale  agagaaaatg---aggag-----ggca-gctg----taa---tgttcggattaattgcttcacgt--gag
           Tibetan antelope  agagaaaatgagaaggag-----ggcaccctg----taa---tgttcagattaattgcttcacat--gag
B D                     Cow  agagaaaatgagaaggag-----ggtaccctg----taa---tgttcagattaattgcttcacat--gag
B D                   Sheep  agagaaaatg---aggag-----ggcaccctg----taa---tgttcagattaattgcttcacat--gag
              Domestic goat  agagaaaatgagaaggag-----ggcaccctg----taa---tgttcagattaattgcttcacat--gag
B D                   Horse  agagaacatg---ggaaggac--ggcagtcta----taa---tgctcagattaaatgcttcatgt--gtg
B D        White rhinoceros  agagaaaatg---agaaggac--ggcagtcta----tac---tgttcaaattaattgcttcatgt--gag
B D                     Cat  agagaaagtg---aggag-----ggcagcctg----taa---cgttcggcttaattgcttcatgt--gag
B D                     Dog  agagaaaatg---acgaa-----ggcagcctg----c-a---tgttcagcttaattgcttcatgt--gag
B D                 Ferret   agaggaaatg---aggag-----ggtagcctg----taa---tgttcagtttaattgcttcaaag--gag
B D                   Panda  agagaaaatg---aggag-----ggcagcctg----taa---tgttcagcttaattgcttcatat--aag
             Pacific walrus  agagaaaatg---aggag-----ggcagcctg----taa---tgttgagcttaattgcttcatgt--gag
               Weddell seal  agagaaaatg---aggag-----ggcagcctg----taa---tgttcagcttaattgcttcatgt--gag
           Black flying-fox  agagaaaatg---agaatgag--gacagcctg----tga---tgttcagattaatcacttcatgt--gag
B D                 Megabat  agagaaaatg---agaatgag--gacagcctg----tga---tgttcagattaattacttcatgt--gag
              Big brown bat  agagaaaat------aaggag--ggcagcctg----taa---tgttcagattaattacttcatgt--gcg
       David's myotis (bat)  agagaaaata---agaaggag--ggcagcctgtaattaa---tgttcagattaattacttcatgt--gcg
B D                Microbat  agagaaaata---agaaggag--ggcagcctg----taa---tgttcagattaattacttcatgt--gcg
B D                Hedgehog  ggagaacatg---agtaaaag--ggcagttta----tac---tgctccgagtgattgcttcatgt--gag
B D                   Shrew  ggagaaaatg---agaaagggggggcagccta----gaa---tattcagtgtgattgtttaagga--gag
            Star-nosed mole  ggagaaaatg---agaaagag-----ctcctg----taa---tgtggaaattgatggcttcatgt--gag
B D                Elephant  agagaaaatg---ag-----a--gacagcctg----taa---tgcttatatggattgccttatgg--cag
        Cape elephant shrew  agaaaagatg---ag-----a--aatagcatg----tac---tgtttgtattgattacctcatga--gag
B D                 Manatee  agagaaaata---agaaat-a--gacagtctg----taa---tgctcatattgattgcctcatgt--gag
           Cape golden mole  agataaaatg---agaaat-a--gacagcctg----taa---tgcttatattgattgtt-catgt--gag
B D                  Tenrec  ----------------------------cctg----tga---gatgtacattgattgccgcatgt--gag
                   Aardvark  agagaaaatg---ggaatt-g--gatagccca----taa---tgttcctgtcgatggcctcatgt--gag
B D               Armadillo  agaaaaaatg---aggaatag--gacagcccg----tta---cggtcggattaattacttcatgt--gaa
B D                 Opossum  agagacagag---acagagac--gggggagaa----catttgtgtgcagactgatgactagattt-gggg
B D                Platypus  -------------aggaaaaa--caaaggttg----tga---acttgagggttcttgctttatttttaag
B D         Tasmanian devil  ======================================================================
B D      American alligator  ======================================================================

                      Human  atatgaaa---gtgta-----t-tcaatgag------aaacattaaaatttgactttaggatg-aa-aaa
                      Chimp  atatgaaa---gtgta-----t-tcaatgag------aaacattaaaatttgactttaggatg-aa-aaa
                    Gorilla  atatgaaa---gtgta-----t-tcaatgag------aaacattaaaatttgactttaggatg-aa-aaa
                  Orangutan  atatgaaa---gtgta-----t-tcaatgag------aaacattaaaatttgactttaggatgaaa-aaa
                     Gibbon  atatgaaa---gtgta-----t-tcaatgag------aaacattaaaatttggctttaggatg-aa-aaa
                     Rhesus  atatgaac---gtgta-----t-tcaatgag------aaacattaaaatttggctttaggatg-aa-aaa
        Crab-eating macaque  atatgaac---gtgta-----t-tcaatgag------aaacattaaaatttggctttaggatg-aa-aaa
                     Baboon  atatgaac---gtgta-----t-tcaatgag------gaacattaaaatttggctttaggatgaaa-aaa
               Green monkey  atatgaac---gtgta-----t-tcaatgag------aaacattaaaatttggctttaggatg-aa-aaa
                   Marmoset  atatgaac---gtgta-----c-tcaatgag------aaacattaaaatttggctttaggatg-aa-aaa
            Squirrel monkey  atatgaac---atgta-----c-tcaatgag------aaacattaaaatttggctttaggatg-aa-aaa
                   Bushbaby  gtaggaat---gcgtg-----t-tgaatgag------aa--attaaaatttggcttaaggatg--a-gaa
         Chinese tree shrew  agatgagt---gtgtg-----t-tgaatgga------aaagattcgaaattagctttaagatg--a-aaa
                   Squirrel  agatgagc---atgtg-----t-tgaactgc------aaagattagaattcaactttaggatg--a-aaa
     Lesser Egyptian jerboa  agcagtactaggtgtg-----t-tgaatagg------aaagatgaaaatttggttataggttg--a-aag
               Prairie vole  agatgaat---gtgta-----t-tgaatggg------gaag------atttggttgtagggtg----aaa
            Chinese hamster  agatgaat---gtgta-----t-tgaatggt------gaagattacaatttggttgtatggtg----aaa
             Golden hamster  agatgaat---gtgta-----t-tgaatggg------gaagatgaaaatttggttgtagggtg----aaa
                      Mouse  agatgaac---gtgta-----t-tgaattgg------gaagattaaaatttggttgtagggtg--a-aaa
                        Rat  agatgaat---gtgta-----t-tgaattgg------ggagattaaaatttggttgtaggatg--a-aaa
             Naked mole-rat  ------------tgta-----t-cggatgaa------aaa-atgaaaattaggccttagaatg-------
                 Guinea pig  agatgaac---atgta-----t-tgaatgga------aaacattaaattcaggctttagaatg-------
                 Chinchilla  agatgaac---ctgta-----t-tgaacggg------aaatcttaaaattaggcattagaatg--a-aga
           Brush-tailed rat  acaagaac---atgta-----t-tgaatggg------aaaaactaaaattaggcattagaatg-aa-aaa
                     Rabbit  agatgaac----tgtg-----t-tgaatggg------aaaaataaacatttgaatttcggttg--a-aat
                       Pika  agatggac----tgag-----t-tgaatggg------gaagaggaacagttgactttaggttg--a-aat
                        Pig  agatgaac---gtgtg-----t-tgaatggg------aaagatttaaatttggtttggggagg-aa-aaa
                     Alpaca  agatgaac---gtgcg-----t-tgaatgaa------aaagatttaaatttggtttt-ggatg--a-aaa
             Bactrian camel  agatgaac---gtgcg-----t-tgaatgaa------aaagatttaaatttggtttt-ggatg--a-aaa
                    Dolphin  a------------gca-----a-ttaatggg------aaagatttaaatttggttttaggatg--a-aaa
               Killer whale  a------------gca-----a-ttaatggg------aaagatttaaatttggttttaggatg--a-aaa
           Tibetan antelope  agatgaac---gtgtg-----t-tgaatgag------aaagatttaaatttggttttaggatg--a-aac
                        Cow  agatgaac---gtgtg-----t-tgaatgag------aaagatttaaatttggttttaggatg--a-aac
                      Sheep  agatgaac---gtgtg-----t-tgaatgag------aaagatttaaatttggttttaggatg--a-aac
              Domestic goat  agatgaac---gtgtg-----t-tgaatgag------aaagatttaaatttggttttaggatg--a-aac
                      Horse  agatgaac---gtgtg-----t-tgaatggg------aaatattaaaatttggttttaggatc--a-aaa
           White rhinoceros  agatgaat---gtgtg-----t-tgaatggg------aaagattaaaatttggttttaggatg--a-aaa
                        Cat  agacgaac---atgtg-----t-tgaagggg------aaagattaaaagttggttttaggctg--a-aaa
                        Dog  agatgaac---atgtg-----t-tgaatggg------aaagattaaaatttgattttacgatg--a-aaa
                    Ferret   aaatgaac---atgcg-----t-tgaatggc------aaagattaaaatttgggtttaggatg--a-gaa
                      Panda  agatgaac-----gtg-----t-tgaatggg------aaagattaaaatttggttttaggatg--a-aaa
             Pacific walrus  agatgaac---atgtg-----t-tgaatggg------aaagattaaaatttggttttaggatg--a-aaa
               Weddell seal  agatgaac---atgtg-----t-tgaatggg------aaagattaaaatttggttttaggatg--a-aaa
           Black flying-fox  agataaa-----cgtg-----c-tgaatgag------aaagaacaaaatttggttttaggatg--a-aaa
                    Megabat  agataaa-----cgtg-----c-tgaatggg------aaagaacaaaatttggttttaggatg--a-aaa
              Big brown bat  cgatgaat---gtgtg-----t-tgaatgag------gaagatcaaaatttggttttgggata--a-aaa
       David's myotis (bat)  cgatgaat---gtgtg-----t-tgaatggg------gaagatcaaaatttggttttgggatg--a-aaa
                   Microbat  cgatgaat---gtgtg-----t-tgaatggg------gaagatcaaaatttggttttggggtg--a-aaa
                   Hedgehog  aagggaat---ctgca-----ctgaagtggg------aaagatgaatatctgtttttaggatg--a-caa
                      Shrew  agataaac---gtacg-----t--------------------------cctgattgtaggatg--agaaa
            Star-nosed mole  agatgagc---gtgtg-----g--aaatggg------aaaggttaaaattgggttttaggatg--a-aaa
                   Elephant  agatgaac---gtatg-----t-tgaatggg------aaggattaaaatttggtctcgggaag--a-aaa
        Cape elephant shrew  agatgaac---atgtg-----c-tggatgag------aaagattatagttttg-ctcttggcg--a-aaa
                    Manatee  agatgaac---atatg-----t-tgaatggg------aaagattaaaatttgatcttgggaag--a-aaa
           Cape golden mole  acatgaac---gtgta-----t-tgaatggg------aatgattacaatttggtcttgggaag-aa-aaa
                     Tenrec  agacgaac---atgca-----t-tgaattgg------aaagatgaaaattcagccttgggaag--a-gga
                   Aardvark  aggtgaac---gtgtg-----c-tgaatggg------aaagatttcaatttggtcttgggaag--g-aaa
                  Armadillo  caacgaat---gtgtg-----t-tgaatggg------aaagatgaaaatttggtcttgggaag--a-aaa
                    Opossum  aaatgagt---aggtaaagtct-tggattaaacatttaaacactcaaattatgcctt--gaag--t-aaa
                   Platypus  taaaaaac---a-gtg-----t-caggctga------gaacaaaagaatt------------g--a-aat
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  atcatg-aaaaagtaataatgaatattatgatcgtgctttca-----------ttgg--a-aa-aaatta
                      Chimp  atcatg-aaaaagtaataatgaatattatgatcgtgctttca-----------ttgg--a-aa-aaatta
                    Gorilla  atcatg-aaaaagtaataatgaatattacgatcgtgctttca-----------ttgg--a-aa-aaatta
                  Orangutan  atcatg-aaaaagtaataatgaatattatgatcgtgccttca-----------ctgg--a-aa-aaatta
                     Gibbon  atcatg-aaaaagtaataatgaatattatgatctcgccttca-----------ttgg--a-aa-aaatta
                     Rhesus  atcatg-aaaaagtaataatgaatattatgattgtgccttca-----------ttgg--a-aa-aaattc
        Crab-eating macaque  atcatg-aaaaagtaataatgaatattatgattgtgccttca-----------ttgg--a-aa-aaattc
                     Baboon  atcatg-aaaaagtaataatgaatattatgattgtgccttca-----------ttgg--a-aa-aaattc
               Green monkey  atcatg-aaaaagtaataatgaatattatgattgtgccttca-----------ctgg--a-aa-aaattc
                   Marmoset  atcatg-aaaaagtaataatgaatattgtgattgtgccttca-----------tagg----aa-aaattt
            Squirrel monkey  atcatg-aaaaagtaataatgaatattgtgatcgtgccttca-----------tagg--a-aa-aaattt
                   Bushbaby  atcatg-aaaaagaaatgatgaataccgctgctgcgtcttca-----------ctga--a-aa-atattc
         Chinese tree shrew  atcata-aaatagaagtattgaataatgttgccatatcttca-----------ttt---a-aa-aaatta
                   Squirrel  actctg-aaaa--aaatgacaaatattttgagtgtgccttca-----------ttgg----aa-aaaatc
     Lesser Egyptian jerboa  atcatg-ac----aaataacagacattttgagtattccttcg-----------tttg----c--taattt
               Prairie vole  ataatg-aaaaagaaataacaaatattatgactctgccttca-----------tttg----ta-aaatac
            Chinese hamster  atcatg-aa----aaataacaaatattgtgactgtgccttca-----------attg----ta-aaatcc
             Golden hamster  atcatg-aataagaaataacaaatattgtgactgtgtcttca-----------tttg----ta-aaatcc
                      Mouse  atcatg-aaaaagaagtaacaaatattgtgactgtgccttca-----------cttg----ta-aaatcc
                        Rat  atcatg-aaaaagaagtaacaaatattttgactgtgccttca-----------cttg----ta-aaatcc
             Naked mole-rat  -----a-aaaaaaaagtagcaaatattgcgactgtg-ctttg-----------tttg----aa-aaattc
                 Guinea pig  -------aaaaacaaatagcaaatattgtgactatggattcg-----------tttg----aa-aaattc
                 Chinchilla  aaaaag-aaaaagaaatagcaaatattgtgactgtaccttcg-----------tttg----ca-aaattt
           Brush-tailed rat  aaaaag-aaagagaaatagcaaattttgtggctgtgccttca-----------tttg----aa-aaatta
                     Rabbit  atcatg-aaaaagaaataatgaatatttgaactatgccttca-----------ttt-----aa-aagtgc
                       Pika  atcacg-aactataaaaactgagtgttgggactgtgccttta-----------tttg----aa-aaatgc
                        Pig  atcatg-aaagagaaataacgacaagtgtgactgtgccttga-----------ttacgaa-aa-taattc
                     Alpaca  atcgtg-aa--agaaataatgactattgtgattgtgccttta-----------ttttgaa-aa-gaattc
             Bactrian camel  atcgtg-aa--agaaataatgactattgtgattgtgccttta-----------ttttgaa-aa-gaattc
                    Dolphin  atcatg-aaagagaaat-ataacta-tgtgactgtgccttta-----------ttttgaa-aa-taattc
               Killer whale  atcatg-aaagagaaat-ataacta-tgtgactgtgccttta-----------ttttgaa-aa-taattc
           Tibetan antelope  atcatg-aaagagaaataatgactattgtgactgtgccttta-----------tttggaa-aa-taatta
                        Cow  atcatg-aaagagaaataatgactattgtgactgtgccttta-----------tttggaa-aa-taattc
                      Sheep  atcatg-aaagagaaataatgactattgtgactgtgccttta-----------tttggaa-aa-taatta
              Domestic goat  atcatg-aaagagaaataatgactattgtgactgtgccttta-----------tttggaa-aa-taatta
                      Horse  atcttg--aaaagaaataatgaatattgtggctatgccttta-----------ttttgaa-aa-t-attc
           White rhinoceros  atcatg-aaaaagaaataatgaatattgtgactatgccttta-----------ttttgaa-aa-t-attc
                        Cat  atcgtg-aaaatgaaataatgaatattgtggctgtgccttta-----------ttttgaa-aa-tcatct
                        Dog  atcatg-gaaaagaaataatgaatattgtgac--tgcctgta-----------ttttgaa-aa-taattt
                    Ferret   gtcatg-gaaaggaaatcatgaatattgtggc--tgccttta-----------ttttgaa-aa-tgattg
                      Panda  atcaggaaaaaagaaataatgaatattgtgac--tgctttta-----------ttttgaa-aa-taattg
             Pacific walrus  atcatg-aaaaagaaataattaatattgtgac--tgccttta-----------ttttg---ag-taattg
               Weddell seal  atcatg-aaaaagaaataatgaatattgtgac--tgccttta-----------ttttg---aa-taattg
           Black flying-fox  agaa-----------ataataaaca-tgtgactgtgccttta-----------tttggaa-aa-taactc
                    Megabat  aaaat----------ataataaaca-tgtgactgtgccttta-----------tttggaa-aa-taattc
              Big brown bat  atcatg-aaaaatagataatgaaccttgcaactgtaacttta-----------ttttgaa-aa-ggattc
       David's myotis (bat)  atcatg-aaaaataaataatgaaccttgcgactgtaactata-----------ttttgag-aa-tgattc
                   Microbat  atcatg-aaaaataaataatgaaccttgcgactgtaactata-----------ttttgag-aa-tgattc
                   Hedgehog  atcatg-agaagggaatcatgaacactgtgactgtacctttg-----------tgttgagcaa-gcattt
                      Shrew  atctcg-agaaagacacaatgaatatcacacttgtgccttta-----------ttttgag-aa-tttttg
            Star-nosed mole  atct-g-aaagggaaaaaatgtatcttgcaactgtgccttta-----------ttttgaa-aa-caagtc
                   Elephant  attctg-aaaaagaaataaagaatattgtgacagtgccttca-----------ttttaaa-aa-aa----
        Cape elephant shrew  attctg-aaaa--aaataaaggatattataactgttccttca-----------tcacaga-aacca----
                    Manatee  attctg-aaaaataaataatgaatattgtgactatgccttca-----------ttttaaa-aa-------
           Cape golden mole  aatctg-gaaa-------aaga--aatgtatctgtgccttca-----------tggaaaa-aa-aa---t
                     Tenrec  attcta-aaaa-------tggactagtgtgcccgtgccttcacatttgtttgtttgtttg-aa-ag---c
                   Aardvark  actctg-aaaa----aagatgaatattgtgactgtgccgtga-----------tttaaaa-at-ta----
                  Armadillo  ctcttg-aaaaagaaataatgactattgtgactgtgccttca-----------ttttgaa-aa-aaat-t
                    Opossum  atctta-aaatgaaggtcatgaacctgaggctcttgccatca-----------tttt--g-ga-caatta
                   Platypus  gactat-aagcagagaagaagagt----------------------------------------------
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  a-tttgt
                      Chimp  a-tttgt
                    Gorilla  a-tttgt
                  Orangutan  a-tttgt
                     Gibbon  a-tttgt
                     Rhesus  a-tttgt
        Crab-eating macaque  a-tttgt
                     Baboon  a-tttgt
               Green monkey  a-tttgt
                   Marmoset  a-tttgt
            Squirrel monkey  a-tttgt
                   Bushbaby  a-cttgt
         Chinese tree shrew  a-tttgt
                   Squirrel  a-tttgt
     Lesser Egyptian jerboa  a-tttgt
               Prairie vole  a-tttgc
            Chinese hamster  a-tttgc
             Golden hamster  a-tttgc
                      Mouse  a-tttgc
                        Rat  a-tttgc
             Naked mole-rat  a-ttt-t
                 Guinea pig  a-tttgt
                 Chinchilla  a-tttgt
           Brush-tailed rat  a-tttgc
                     Rabbit  a-tttgg
                       Pika  a-tttgg
                        Pig  a-tttgt
                     Alpaca  a-tttgt
             Bactrian camel  a-tttgt
                    Dolphin  a-tttgt
               Killer whale  a-tttgt
           Tibetan antelope  a-tttgt
                        Cow  a-tttgt
                      Sheep  a-tttgt
              Domestic goat  a-tttgt
                      Horse  a-tttgt
           White rhinoceros  a-tttgt
                        Cat  a-tttgt
                        Dog  a-tttgt
                    Ferret   attttgt
                      Panda  a-tttgt
             Pacific walrus  a-tttgt
               Weddell seal  a-tttgt
           Black flying-fox  a-ttttt
                    Megabat  a-ttttt
              Big brown bat  a-tttgt
       David's myotis (bat)  a-ttcgt
                   Microbat  a-tttgt
                   Hedgehog  a-tttgg
                      Shrew  t-tttgt
            Star-nosed mole  a-tctgt
                   Elephant  --tttat
        Cape elephant shrew  --gtagt
                    Manatee  --attat
           Cape golden mole  gctttgt
                     Tenrec  g-tttgt
                   Aardvark  --tctgt
                  Armadillo  a-tttgt
                    Opossum  a-tcagt
                   Platypus  -------
            Tasmanian devil  =======
         American alligator  =======

Inserts between block 3 and 4 in window
B D                Opossum 339bp

Alignment block 4 of 118 in window, 140710476 - 140710481, 6 bps 
B D                   Human  -attt-t---------------------------------------t
B D                   Chimp  -attt-t---------------------------------------t
B D                 Gorilla  -attt-t---------------------------------------t
B D               Orangutan  -attt-t---------------------------------------t
B D                  Gibbon  -attt-t---------------------------------------t
B D                  Rhesus  -attt-t---------------------------------------t
B D     Crab-eating macaque  -attt-t---------------------------------------t
B D                  Baboon  -attt-t---------------------------------------t
B D            Green monkey  -attt-t---------------------------------------t
B D                Marmoset  -attt-t---------------------------------------t
B D         Squirrel monkey  -attt-t---------------------------------------t
B D                Bushbaby  -gttt-t---------------------------------------g
         Chinese tree shrew  -attt-t---ggacactttatatagaagagagaatgttctcggcact
B D                Squirrel  -atat-t----------------------------------------
     Lesser Egyptian jerboa  -attc-tt---------------------------------------
               Prairie vole  -tttt-t----------------------------------------
B D         Chinese hamster  -tttc-t----------------------------------------
             Golden hamster  -tttt-t----------------------------------------
B D                   Mouse  -tttt-t----------------------------------------
B D                     Rat  -tttt-t----------------------------------------
B D          Naked mole-rat  -gtta-t-t--------------------------------------
B D              Guinea pig  -atta-t-t--------------------------------------
                 Chinchilla  -gtta-t-t--------------------------------------
           Brush-tailed rat  -gtta-t-t--------------------------------------
B D                  Rabbit  -attt-t--c-------------------------------------
B D                    Pika  -gttt-t--t-------------------------------------
B D                     Pig  -atttat----------------------------------------
B D                  Alpaca  -atttgt----------------------------------------
             Bactrian camel  -atttgt----------------------------------------
B D                 Dolphin  -atttgt----------------------------------------
               Killer whale  -atttgt----------------------------------------
           Tibetan antelope  -atttgt----------------------------------------
B D                     Cow  -atttgt----------------------------------------
B D                   Sheep  -atttgt----------------------------------------
              Domestic goat  -atttgt----------------------------------------
B D                   Horse  -atttgt----------------------------------------
B D        White rhinoceros  -atttgt----------------------------------------
B D                     Cat  -ccttgt----------------------------------------
B D                     Dog  -attcat----------------------------------------
B D                 Ferret   -attcat----------------------------------------
B D                   Panda  -attcgt----------------------------------------
             Pacific walrus  -attcat----------------------------------------
               Weddell seal  -attcat----------------------------------------
           Black flying-fox  -atttgt----------------------------------------
B D                 Megabat  -atttgt----------------------------------------
              Big brown bat  -atttat----------------------------------------
       David's myotis (bat)  -atttat----------------------------------------
B D                Microbat  -atttat----------------------------------------
B D                Hedgehog  -acttgg----------------------------------------
B D                   Shrew  -attcgt----------------------------------------
            Star-nosed mole  -gtttgt----------------------------------------
B D                Elephant  -attttg----------------------------------------
        Cape elephant shrew  -atttta----------------------------------------
B D                 Manatee  -agtttt----------------------------------------
           Cape golden mole  -attttt----------------------------------------
B D                  Tenrec  -attttg----------------------------------------
                   Aardvark  -cttttt----------------------------------------
B D               Armadillo  -attttt----------------------------------------
B D                Platypus  tctct------------------------------------------
B D         Tasmanian devil  ===============================================
B D                 Opossum  ===============================================
B D      American alligator  ===============================================

Inserts between block 4 and 5 in window
    Lesser Egyptian jerboa 10bp

Alignment block 5 of 118 in window, 140710482 - 140710511, 30 bps 
B D                   Human  ggacagcgatttatacagtaaagacaagag
B D                   Chimp  ggacagcgatttatacagtaaagacaagag
B D                 Gorilla  ggacagcgatttatacagtaaagacaagag
B D               Orangutan  ggacagcgatttatacagtaaagacaagag
B D                  Gibbon  ggacagcgatttatacagta-----aagag
B D                  Rhesus  ggacagcaatttatacagtaaagac-agag
B D     Crab-eating macaque  ggacagcaatttatacagtaaagac-agag
B D                  Baboon  ggacagcaatttatacagtaaagac-agag
B D            Green monkey  ggacagcaatttatacagtaaagac-agag
B D                Marmoset  ggatagtgatttatacagtaaagac-agaa
B D         Squirrel monkey  ggatagtgatttatacagtaaagac-agaa
B D                Bushbaby  ggtcagcaatttgtagagtaaagac-agaa
         Chinese tree shrew  ggacaacaatttatatagaagag---agaa
B D                Squirrel  agatgtcaatttagatggtaaagac-agaa
               Prairie vole  gcatgtcatgctgtacagtagagat-agaa
B D         Chinese hamster  gcatgtcatgctgtacagtaaagat-agaa
             Golden hamster  gcgtgtcatgctgtacagtaaagat-agaa
B D                   Mouse  gcatgtcatgttgtacaat--cgat-agaa
B D                     Rat  gcatgtcatgttgtacaat--cgat-agaa
B D          Naked mole-rat  gaacatcaatttatacagtaaagcc-aa--
B D              Guinea pig  agatatcaatttatacagcaaagat-aa--
                 Chinchilla  ggatatcactttatacagaaaagac-ag--
           Brush-tailed rat  ggacataaatttatacagtaaagac-aa--
B D                  Rabbit  gaacttcaatttgtgcagtaaaaga-a---
B D                    Pika  ggacgtcattttgtgcagtgaaaga-a---
B D                     Pig  tgacatcaatttttacagtagagac-agaa
B D                  Alpaca  ggacattaatttttacagtaaagac---aa
             Bactrian camel  ggacattaatttttacagtaaagac---aa
B D                 Dolphin  ggacatcaatttttacagtaaagac-agaa
               Killer whale  ggacatcaatttttacagtaaagac-agaa
           Tibetan antelope  ggacatcaatttctacagtaaagac---aa
B D                     Cow  ggacattgatttttacagtaaagac---aa
B D                   Sheep  ggacatcaatttctacagtaaagac---aa
              Domestic goat  ggacatcaatttctacagtaaagac---aa
B D                   Horse  ggatatcaatttgtatagtaaagac-agaa
B D        White rhinoceros  ggacatcaatttgtacagtaaagac-agaa
B D                     Cat  ggacatcaatttgtactgtaaaggc-agaa
B D                     Dog  ggacatcgatttgtacagtaaggac-agaa
B D                 Ferret   ggacatcaattagtgcagtaaaggc-agaa
B D                   Panda  ggacatcaatttgtacagt-aaggc-agaa
             Pacific walrus  ggacatcagtttgtacagtaaaggc-agaa
               Weddell seal  ggacatcaatttgtacagtaaaggc-agaa
           Black flying-fox  gggaatcaatttgtaagataaagac-agaa
B D                 Megabat  gggaatcaatttgtaagataaagac-agaa
              Big brown bat  gggggtcaatttgtacagtaaagat-agaa
       David's myotis (bat)  gggggtcaatttgtacagtaaagat-agaa
B D                Microbat  gggggtcaatttgtacagtaaagat-agaa
B D                Hedgehog  gagcatcaaagtgtacattgaagac-agaa
B D                   Shrew  ggacatcgtggtgtgggataaacgc-agtg
            Star-nosed mole  ggacatcaatttgtagtgtcaagac-agaa
B D                Elephant  gggcatcaatttaaacagaaaagac-agaa
        Cape elephant shrew  ggacatccatggaaacagtagagga-aggc
B D                 Manatee  ggacatcaatttaaatggtaaagac-agaa
           Cape golden mole  ggacctctatttaa-----ataggt-aaga
B D                  Tenrec  ggacatccatggaagcatcacaggc-agga
                   Aardvark  ggacatcaatttaaacagtgaagac-agag
B D               Armadillo  ggacatagatttaaacagtaatgac-agaa
B D                Platypus  ------------------tgagagc-----
    Lesser Egyptian jerboa  ==============================
B D         Tasmanian devil  ==============================
B D                 Opossum  ==============================
B D      American alligator  ==============================

Inserts between block 5 and 6 in window
          Cape golden mole 1bp

Alignment block 6 of 118 in window, 140710512 - 140710573, 62 bps 
B D                   Human  tgttc---tc-ggtgc-ttctttttt----------------------t------------------gaa
B D                   Chimp  tgttc---tc-ggtgc-ttctttttt----------------------t------------------gaa
B D                 Gorilla  tgttc---tc-ggtgc-ttctttttt----------------------t------------------gaa
B D               Orangutan  tgttc---tt-ggtgc-ttctttttt----------------------t------------------gaa
B D                  Gibbon  tgttc---tc-ggtgc-ttctttttt----------------------t------------------gaa
B D                  Rhesus  tgttc---tc-agtgc-ttctttttt----------------------t------------------gaa
B D     Crab-eating macaque  tgttc---tc-agtgc-ttctttttt----------------------t------------------gaa
B D                  Baboon  tgttc---tc-agtgc-ttctttttt----------------------t------------------gaa
B D            Green monkey  tgttc---tc-agtgc-ttctttttt----------------------t------------------gaa
B D                Marmoset  tgttc---tc-agtgc-ttcttttat----------------------t------------------tta
B D         Squirrel monkey  tgttc---tt-ggtgc-ttcttttat----------------------t------------------tta
B D                Bushbaby  tgttcttttc-tggac-ttctttttt----------------------ttttttttt------tttgaat
         Chinese tree shrew  cgttc---tc-ggcac-ttcttattt----------------------t------------------aaa
B D                Squirrel  tgttc---tc-agtgg-ttctttttt--------------------tct------------------aaa
     Lesser Egyptian jerboa  tgttc---tc-agtac-ttcctttaa----------------------t------------------gaa
               Prairie vole  tgttc---tc-ggtgc-ttttttttt------------------ttttt------------------gaa
B D         Chinese hamster  tgttc---tc-ggtgc-tttttttttt-----------ttttttttttt------------------gaa
             Golden hamster  tgttc---tc-gttgc-ttttttttt-------------------------------------------a
B D                   Mouse  tattc---tc-ggtga-ttttcttttcttttcttttctttttctttttt------------------gaa
B D                     Rat  tcttc---tg-gatgc-ttttctttgc-----------------ttttt------------------gaa
B D          Naked mole-rat  tgttc---tt-agtgg-ttttcttct-------------------tttt------------------tga
B D              Guinea pig  tgctc---tt-agtgg-gttttttt---------------------------------------------
                 Chinchilla  tgctc---tt-aatgg-gttctttt---------------------------------------------
           Brush-tailed rat  tgttc---gt-attgg-gatgtttt---------------------------------------------
B D                  Rabbit  tgctc---tt-ggtcc-ttctttttt--------------------tct------------------gaa
B D                    Pika  tgttc---tt-ggttc-ttc---ctt--------------------tct------------------gaa
B D                     Pig  tatta---tc-agc-c-ttctttctt----------------------g------------------gga
B D                  Alpaca  tatta---tc-agtcc-ttctttctt----------------------t------------------gga
             Bactrian camel  tatta---tc-agtcc-ttctttctt----------------------t------------------gga
B D                 Dolphin  tatta---tc-agtgc-tgccttcct----------------------t------------------gga
               Killer whale  tatta---tc-agtgc-tgccttcct----------------------t------------------gga
           Tibetan antelope  tatga---tc-agtgc-ttctttctt----------------------g------------------gga
B D                     Cow  tatga---ta-agtgc-ttctttctt----------------------g------------------gga
B D                   Sheep  tatga---tc-agtgc-ttctttctt----------------------g------------------gga
              Domestic goat  tatga---tc-agtgc-ttctttctt----------------------g------------------gga
B D                   Horse  tattc---tc-agtgctttctttctt----------------------t------------------gaa
B D        White rhinoceros  tagtc---tc-agtgc-ttctttctt----------------------t------------------gaa
B D                     Cat  tattc---tc-agtgc-ctctttatt----------------------t------------------cac
B D                     Dog  tattc---tc-agtgc-ttctttatt----------------------t------------------gag
B D                 Ferret   tattc---tcaagtgc-ttctttatt----------------------t------------------gaa
B D                   Panda  tattc---tc-agtgc-tgctttatt----------------------t------------------gaa
             Pacific walrus  tattc---tc-agtgc-ttctttatt----------------------t------------------gaa
               Weddell seal  tattc---tc-agtgc-ttctttatt----------------------t------------------gta
           Black flying-fox  tattc---tc-agtgt-ttctttctt----------------------t------------------gaa
B D                 Megabat  tattc---tc-agtgt-ttctttctt----------------------t------------------gaa
              Big brown bat  tcttc---tc-agtat-tcctttctt----------------------t------------------gaa
       David's myotis (bat)  tcttc---tt-agtat-tcctttctt----------------------t------------------gaa
B D                Microbat  tcttc---tc-agtat-tcctttctt----------------------t------------------gaa
B D                Hedgehog  taccc---cc-agtgc-ttctttctt----------------------c------------------aaa
B D                   Shrew  tact-------cgtgc-tcctttctt----------------------t------------------ggc
            Star-nosed mole  tattc---tc-cgtgc-ttctttctt----------------------t------------------gga
B D                Elephant  tgttc---tt-gatgt-ttctgtctt----------------------t------------------gaa
        Cape elephant shrew  tggtc---tt-ggtgt-ttctgtctt----------------------t------------------g--
B D                 Manatee  tgttc---tc-ggtgt-ttctgtctt----------------------t------------------gaa
           Cape golden mole  cgatc---tt-ggtgg-gtctgtctt----------------------t------------------gaa
B D                  Tenrec  tgctc---ct-ggtgg-gcctgtctt----------------------t------------------gta
                   Aardvark  tgttt---ct-ggtgt-gtctgtctt----------------------t------------------gaa
B D               Armadillo  cgttc---tc-agtgt-tttttcctt----------------------t------------------gaa
B D                Platypus  --tcg---tc-agtgc-ttttttttt----------------------ttcccttatcaaacacctccaa
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D      American alligator  ======================================================================

                      Human  aagggatg-------tgagatggatagcagagattcttatcaac
                      Chimp  aagggatg-------tgagatggatagcagagattcttatcaac
                    Gorilla  aagggatg-------tgagatggatagcagagattcttatcaac
                  Orangutan  aagggatg-------tgagatggatagcagagattcttatcaac
                     Gibbon  aagggatg-------tgagatggatagcagagattctgatcaac
                     Rhesus  aagagatg-------tgagacagatagcagagattcttatcaac
        Crab-eating macaque  aagagatg-------tgagacagatagcagagattcttatcaac
                     Baboon  aagggatg-------tgagacagatagcagagattcttatcaac
               Green monkey  aagggatg-------tgagacagatagcagagattcttatcaac
                   Marmoset  aagggatg-------taagaaggatagcagggattcttatcaac
            Squirrel monkey  aagggatg-------taagaaggatagcagggattcttatcaac
                   Bushbaby  aaaagatg-------tgagaaagacagcacagatgcctatcaac
         Chinese tree shrew  aaggggaggggagcatgagaaagatagcaaggattcctgtcaac
                   Squirrel  aatggatg-------tgagtagggtagcagagattcctaacaac
     Lesser Egyptian jerboa  aaggaatg-------tgagaat-ttagc--agattcctatggat
               Prairie vole  aaggaatg-------tgagaat-ttagcagagattcctatggat
            Chinese hamster  aaagaatg-------tgagaat-gtagcagagattcctatggac
             Golden hamster  aaggaatg-------tgagaat-------gagattcctatggat
                      Mouse  aaggaatg-------tgagaat-gtagcagagattcctatggat
                        Rat  aaggaatg-------tgagcat-gtagcagagattcctatagat
             Naked mole-rat  aaaggctg-------ggaaaagcatagcagagattcctattgac
                 Guinea pig  -gaggatg-------tgagaaacatagcagagattcctattgac
                 Chinchilla  -aaggatg-------tgagaagcatagc--agattcctgttgac
           Brush-tailed rat  ggaggatg-------tgaaaagcatagc--agattcctattgac
                     Rabbit  gagggatg-------agagaaggatagcagagatgcctctcaac
                       Pika  gaggggtg-------tgagaaggatagcagagattcctgtcaac
                        Pig  aagcgatg-------tggaaaagatagcagagatgcctatcaac
                     Alpaca  aagggatg-------tggaaaagacagcagagattcctatcagc
             Bactrian camel  aagggatg-------tggaaaagacagcagagattcctatcagc
                    Dolphin  aagggatg-------tggaaaagatagc--agattcctatcaac
               Killer whale  aagggatg-------tggaaaagatagc--agattcctatcaac
           Tibetan antelope  aagggatg-------tgaaaaaaaaagc--agattcctatcaac
                        Cow  aagggatg-------tgaaaaaaacagc--agattcctatcaac
                      Sheep  aagggatg-------tgaaaaaaa-agc--agattcctatcaac
              Domestic goat  aagggatg-------tgaaaaaaa-agc--agattcctatcaac
                      Horse  aagggatg-------tgacaaggatagc--agattcctatccac
           White rhinoceros  aggggacg-------tgagaagcgtaac--agattcctatcaac
                        Cat  aagggatg-------gaagaaggataccagagattcttatcaaa
                        Dog  aagggatg-------tgagaaggatagcagagattcctatcaaa
                    Ferret   aagagctc-------tgagaaggatttcagagattcctatcaga
                      Panda  aagggctg-------tgggaaggatcgcagagattcctatcaga
             Pacific walrus  aaggactg-------tgagaaggat-------------------
               Weddell seal  aagggctg-------tgagaaggatagcagagattcctatcaga
           Black flying-fox  aagggatg-------tgagaagggtagcagagattcctatcaac
                    Megabat  aagggatg-------tgagaagggtagcagagattcctatcaac
              Big brown bat  aagggatg-------taagaaggatagcagagattcctatcaac
       David's myotis (bat)  aagggatg-------taagaaggatagcagagattcctatcaac
                   Microbat  aagggatg-------taagaaggatagcagagattcctatcaac
                   Hedgehog  aagaaatg-------tgag--tgttagcatcgatt------gac
                      Shrew  aagggatg-------ggagaaggagagcagagattctaatcaac
            Star-nosed mole  aagggaca-------tggaaaggatcgcagagattcttatcaac
                   Elephant  aagggatg-------tgagaaggatagcagagattcctatcaac
        Cape elephant shrew  ----------------gagaaagagagcggagattgctctccac
                    Manatee  aaggggtg-------tgagaaggatagcagagattcctatcaac
           Cape golden mole  aaggtgtg-------tgggaaggatagcagaggtt-ctgatcac
                     Tenrec  aagt----------------ggggtagcagagctt-ccatcagc
                   Aardvark  aagggatg-------tgagcaggagagaagagaaccctgtcagc
                  Armadillo  aaggggta-------tgagaaggctat--aagattcctatcaac
                   Platypus  agagggtg-------gacaaaggggaggaaggagccccataaat
            Tasmanian devil  ============================================
                    Opossum  ============================================
         American alligator  ============================================

Alignment block 7 of 118 in window, 140710574 - 140710849, 276 bps 
B D                   Human  gaagct-ttaatgtttgtttctgaaacattcctgaaaa----cagagc----------------------
B D                   Chimp  gaagct-ttaatgtttgtttctgaaacattcctgaaaa----cagagc----------------------
B D                 Gorilla  gaagct-ttaatgtttgtttctgaaacattcctgaaaa----cagagc----------------------
B D               Orangutan  gaagct-ttaatgtttgtttctgaaacattcctgaaaa----cagagc----------------------
B D                  Gibbon  gaagct-ttaatgtttgtttctgaaacattcctgaaaatg-tctatgc----------------------
B D                  Rhesus  aaagct-tttatgtttgtttctgaaacattcctgaaaatg-tctatgc----------------------
B D     Crab-eating macaque  aaagct-tttatgtttgtttctgaaacattcctgaaaatg-tctatgc----------------------
B D                  Baboon  aaagct-tttatgtttgtttctgaaacattcctgaaaatg-tctatgc----------------------
B D            Green monkey  aaagct-tt--tgtttgtttctgaaacattcctgaaaatg-tctatgc----------------------
B D                Marmoset  aaagct-ttaatgtttgtttctgaaacagttctgaaaatg-tctatgc----------------------
B D         Squirrel monkey  aaagct-ttaacgtttgcttctgaaacatttctgaaaatg-tctatgc----------------------
B D                Bushbaby  aaagct-tttacgtttacttctgaaatatgtctgaaaatg-tatatgc----------------------
         Chinese tree shrew  accact-cttgcattt-tttctgcaatgtgcctgtaaatg-catgtgc----------------------
B D                Squirrel  acagct-tttatgtttgtt------------------------tatgt----------------------
     Lesser Egyptian jerboa  acagct-cttcagtttttttcag-agtacgactgaaaatg-tatatgc----------------------
               Prairie vole  acaaca-ttt-tgtttgtttctc-aatatctctgaaattg-tgtgtac----------------------
B D         Chinese hamster  acagca-tttctgtttgcttctc-aatatccctgaatttg-tgtgtgc----------------------
             Golden hamster  acagca-tttctgtttgcttctc-aatatccctgaaattc-tgtgtgc----------------------
B D                   Mouse  acagca-tttctgtttgcttctc-aatatccctgaaattg-tgtgtgc----------------------
B D                     Rat  gcagca-tttctgtttgcttctc-aatatccctgaaattg-tgtgtgt----------------------
B D          Naked mole-rat  acacct-tttctgtatgtttctgaaatatgcctggaaatg-cgt-agg----------------------
B D              Guinea pig  ccagct-tttatgtgtgtttctgaaatataccttgaaatg-cat-att----------------------
                 Chinchilla  acagct-tttatgtgtgtttctgaaatatgcttggaaatg-cttattt----------------------
           Brush-tailed rat  acagct-tttatatgtgtttcagaaatatgcctggaaatg-t---ctt----------------------
B D                  Rabbit  aaggct-tctatgtttatttcggaaataagcctgcaaatg-gatatgc----------------------
B D                    Pika  agaggt-tttatgtttatttctgaaataagcctgcaaata-catatgc----------------------
B D                     Pig  aaagct-tttctgtttgttactgaagtgtgcctgaaaatg-gttaggc-ttt-tgtgtctccttttaccg
B D                  Alpaca  agagct-tttatatttgtttctgaactgtgcctgaaaata-tttaagc-ttt-tgtgcctccttttacct
             Bactrian camel  agagct-tttatatttgtttctgaactgtgcttgaaaata-tttaagc-ttt-tgtgcctccttttacct
B D                 Dolphin  aaagct-tttatatttgtttctgaattgtgcctgaaaatg-tttaagc-ttt-tgtgtgtccttttacct
               Killer whale  aaagct-tttatatttgtttctgaattgtgcctgaaaatg-tttaagc-ttt-tgtgtgtccttttacct
           Tibetan antelope  aaagct-tttatatttatttctgaatcatgcctgaaaatg-tttacgc-ttt-agtgtctccttgtacct
B D                     Cow  aaagct-tttatatttgtttctgaatcgtgcctgaaaatg-tttaccc-ttt-agtgtctccttgtacct
B D                   Sheep  aaagct-tttatatttatttctgaatcgtgcctgaaaatg-tttacgc-ttt-agtgtctccttgtacct
              Domestic goat  aaagct-tttatatttatttctgaatcgtgcctgaaaatg-tttacgc-ttt-agtgtctccttgtacct
B D                   Horse  aaagct-tttatgtttgtttctgaaatgtgcctgaaaagg-tgtaagc-tct-tgtatccccttttacct
B D        White rhinoceros  aaagct-tttatgtttgtttctgaaatgtgcctgaaaatg-tgtaagc-ttt-caagtctccttttaccg
B D                     Cat  aaaggt-tttatgtttgtttctgaaaagtgtctgaaaacg-tgtaaga-tgt-tgtgcccccttttacct
B D                     Dog  agagct-tttacgttggtttctgaaatgtgcctgaaaatg-tgtaagc-ttt-tgtgccccctttcacct
B D                 Ferret   aaagct-tttatgtttgttcctgaaatgtgccggaaaatg-cgtaagc-ttt-tgtg-cccctttcacct
B D                   Panda  aaagct-tttatgtttgtttctgaaatgtgcttgaaagtg-cgtaggc-ttt-tgtgcccccttttacct
             Pacific walrus  --agct-tttatgtttgtgtctgaaatgtgcctgaaaatg-cgtaagc-ttt-tgtgccccctttcacct
               Weddell seal  aaagct-tttatgtttgtttctgaaatgtgcctgaaaatg-cgtaagc-ttt-tgtgccccctttcacct
           Black flying-fox  aaagct-ttcctgtttgtttctgaaatgtgcctgaaaatg-tgtaagc-ttc-tgtgtgtccttttatct
B D                 Megabat  aaagct-ttcctgtttgtttctgaaatgtgcctgaaaatg-tgtaagc-ttc-tgtgtgtccttttatct
              Big brown bat  aaagct-gttttgtgtgtttctgaaatgtgtttggaaatg-tgta------t-tatgtttcctgtcccat
       David's myotis (bat)  aaagct-gttttgtatgtt-----------tttgaaaatg-tgta------t-tatgtttcctcttccat
B D                Microbat  aaagct-gttttgtatgtt-----------tttgaaaatg-tgta------t-tatgtttcctgtgccat
B D                Hedgehog  aaagct-tttctggttgttgctgaaatatgcctgagacga-tgtgagc--tt-tgtgtttcctttaactt
B D                   Shrew  aaagct-tctacgtttgtttctgaggagggccagaaaaagatgttagcgttt-tgtgtctctttcagctt
            Star-nosed mole  aaagctgttcatgtttgtttttgataggtgcctgaaaacg-tgcaagt-tct-tgtatcttatttaacct
B D                Elephant  caagct-tttatgtttgtttttgaaatgtgcctgaaaatg-tgtaagc-ctt-tgtgtctccttt-acct
        Cape elephant shrew  caagct-tttatatttgcttttgtaatgttcctgaaaatg-tgtgagc-ttt-tgtgtctccttt-acct
B D                 Manatee  caagct-tttatgtttgtttttgaaatgtgcctgaaaatg-tgtaagc-ttt-tgtgcctccttt-acct
           Cape golden mole  aatgct-tttatgtttgtttttgaagtgtgctggaaaatg-tgtaagc-tttctgtgtctccttt-acct
B D                  Tenrec  aaagat-ttgaggtttgctttttaaatgtgcctgaaaatg-tgtaggc-tgt-ggtgtcgccttt-acct
                   Aardvark  aaagct-gt--ggtttgtttttgaaatgtgtctgcagatg-tctaaga-gtt-cttgtctcctct-acct
B D               Armadillo  aaagat-tt--tgtttgtttctgaaatgtgcctgaaaatg-tgtatgc-ttt-tgtttccctttt-actt
B D                 Opossum  gaagct-ttttagtctgtt---------tacctggagatt-t-----c----------------------
B D                Platypus  taaact-tttaagtttgtttctgaaat-tacctgggaaag-cgggagc-ttt---ttggtctatttgtct
B D         Tasmanian devil  ======================================================================
B D      American alligator  ======================================================================

                      Human  ---------ttttgtag--------ctctgtttctgca----a---------------gaaaa-------
                      Chimp  ---------ttttgtag--------ctctgtttctgca----a---------------gaaaa-------
                    Gorilla  ---------ttttgtag--------ctctgtttctgca----a---------------gaaaa-------
                  Orangutan  ---------ttttgtag--------ctctgtttctgca----a---------------gaaaa-------
                     Gibbon  ---------ttttgtag--------ctctgtttctgca----a---------------gaaaa-------
                     Rhesus  ---------ttttgtag--------ctctgtttctgca----a---------------gaaaa-------
        Crab-eating macaque  ---------ttttgtag--------ctctgtttctgca----a---------------gaaaa-------
                     Baboon  ---------ttttgtag--------ctctgtttctgca----a---------------gaaaa-------
               Green monkey  ---------ttttgtag--------ctctgtttctgca----a---------------gaaaa-------
                   Marmoset  ---------ttttgtag--------ttctgtttctgcc----a---------------g-----------
            Squirrel monkey  ---------ttttgtag--------ttctgtttctgcc----a---------------gaaaa-------
                   Bushbaby  ---------ttttatag--------ctctgtttctgga----a---------------gagaa-------
         Chinese tree shrew  ---------ttctgcgg--------atccatttctgca----g---------------------------
                   Squirrel  ---------ttttgtag--------actggtttctgcc----a---------------gaaa--------
     Lesser Egyptian jerboa  ---------tcttgtcg--------gttagtttctaca----aaaaaatcaacaaaacaaaaa-------
               Prairie vole  ---------tcttttag--------gttggttactgca----a---------------ggaaa-------
            Chinese hamster  ---------tcttttag--------acttgttactgca----g---------------aaaaa-------
             Golden hamster  ---------tcttttag--------acttgttactgca----g---------------aaaaa-------
                      Mouse  ---------tc-tttat--------gctgcttgctgta----a---------------gaaaa-------
                        Rat  ---------tcttttat--------gctggttcctgta----a---------------gaaaa-------
             Naked mole-rat  ---------ttttatag--------gccagtttcacca----a---------------gaaga-------
                 Guinea pig  ---------attcatag--------gtcagtttcttca----a---------------gaaaa-------
                 Chinchilla  ---------tttcatag--------gtcagtttctgca----a---------------gaaaa-------
           Brush-tailed rat  ---------ttttatag--------gtcagtttcttca----g---------------gaaaa-------
                     Rabbit  ---------ttttgcat--------atctgtttctgaa----a---------------aaaaa-------
                       Pika  ---------ttttgcac--------atctgtttct-----------------------------------
                        Pig  ggagcttgcttttgtag--------ctatgtttctgta----a---------------gaaaa-------
                     Alpaca  ggaaattgcttctgtag--------ctatctttctgca----g---------------gaaaa-------
             Bactrian camel  ggaaattgcttctgtag--------ctatctttctgca----g---------------gaaaa-------
                    Dolphin  ggaaattgcttttgtag--------ataagtttctgca----a---------------gaaaa-------
               Killer whale  ggaaattgcttttgtag--------ataagtttctgca----a---------------gaaaa-------
           Tibetan antelope  ggaaattgctttcgtac--------atacatttctgca----a---------------gaaaa-------
                        Cow  ggaaattgctttagtac--------atacgtttctgca----a---------------gaaaa-------
                      Sheep  ggaaattgctttcgtac--------atacgtttctgca----a---------------gaaaa-------
              Domestic goat  ggaaattgctttcgtac--------atacgtttctgca----a---------------gaaaa-------
                      Horse  ggaacttgcttttgtag--------atctgtttctgca----a---------------gaaa--------
           White rhinoceros  ggaaattgcttttgtag--------atctgtttctgca----a---------------gaaa--------
                        Cat  agaaattgcatttgtag--------atccatttctgca----a---------------gaaaacaaacca
                        Dog  ggaaatcgtatttgtag--------atccatttctgcg----a---------------ggaaaa------
                    Ferret   ggaaagcgcattagtag--------atccatttcggca----a---------------gaaaac------
                      Panda  ggaaattgcattagtgg--------atccatttctgca----a---------------gaa---------
             Pacific walrus  ggaaatcgcattagtag--------atccatttctgca----a---------------gaaa--------
               Weddell seal  ggaaatcacattagtag--------atccatttctgca----a---------------gaaa--------
           Black flying-fox  ggaaattgcttttgtag--------atctatttctgca----a---------------gaaaa-------
                    Megabat  ggaaattgcttttgtag--------atctatttctgca----a---------------gaaaa-------
              Big brown bat  ggaatatgctttcatag--------atctatttctgcaaga-a---------------aaatg-------
       David's myotis (bat)  gaaatttgctttcatag--------atctatttctgcaaaaga---------------aaaag-------
                   Microbat  gaaatttgctttcatag--------atctatttctgcaaa--a---------------aaaag-------
                   Hedgehog  ggaaatcacttttgtagctctgtaaatctgtttctgca----a---------------------------
                      Shrew  ggaaactactttcttag--------agatctctctgca----a---------------ggac--------
            Star-nosed mole  ggatattagtttggt----------agatgtttctgca----a---------------ggga--------
                   Elephant  ggaaattgctttcgtag--------atttgtttcttca----a---------------g-----------
        Cape elephant shrew  ggggattggttttgtag--------atctgtttctgcg----a---------------g-----------
                    Manatee  ggaaattgcttttgtgg--------atctgtttcttca----a---------------g-----------
           Cape golden mole  ggaaattgcttttatag--------atctgtatcttc---------------------------------
                     Tenrec  gcaaattgtctttagag--------gtctgcctctttc----a---------------gaaaa-------
                   Aardvark  gggaatcactcct--ag--------atctgtttcttca--------------------------------
                  Armadillo  ggaagttgcttttgtag--------atctgtttgtgcc----a---------------gaaaa-------
                    Opossum  ---------ttttgtag--------atcagttactgtg----g---------------aaaac-------
                   Platypus  ggaggtttcttttgtag--------atcagttactgaa----g---------------taaac-------
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  --acg-----------------aaaaa----aa-------a----aa--------------gtgaagtg-
                      Chimp  --acg-----------------aaaaa----aa-------a----aa--------------gtgaagtg-
                    Gorilla  --acg-----------------aaaaa----aa-------a----aa--------------gtgaagtg-
                  Orangutan  --atg------------a----aaaaa----aa-------a----aa--------------gtgaagtg-
                     Gibbon  --acga-----------a----aaaaa----aa-------a----aa--------------gtgaagtg-
                     Rhesus  --atgg---aaaaaaaaa----aaaaa----aa-------aaaacaa--------------gtgaagtg-
        Crab-eating macaque  --atggaaaaaaaaaaaa----aaaaa----aa-------aaaacaa--------------gtgaagtg-
                     Baboon  --atggaaaaaaaaaaaaaaacaaaaa----aa-------aaaacaa--------------gtgaagtg-
               Green monkey  --atgg------gggaaa----aaaaa----aa-------aaaacaa--------------gtgaagtg-
                   Marmoset  -----------------------aaaa----aa-------a----aa--------------gtgacgtg-
            Squirrel monkey  ----------------------aaaaa----aa-------a----aa--------------gtgatgtg-
                   Bushbaby  --aa------------------ggaaa----aa-------a----ag--------------gtgaagtt-
         Chinese tree shrew  ----------------------gacaa----aa-------a----tg--------------gtgaagtg-
                   Squirrel  ----------------------aaaaa----at-------g----ta--------------gtgaagtg-
     Lesser Egyptian jerboa  --t-------------------agaca----aa-------t----aa--------------gtaaagtg-
               Prairie vole  --c-------------------agaaa----aa-------g----ag--------------gtgaagtc-
            Chinese hamster  --a-------------------acaga----aa-------g----ag--------------gtgaagtt-
             Golden hamster  --t-------------------agaaa----aa-------g----ag--------------gtgaagtt-
                      Mouse  --c-------------------agaaa----at-------g----ag--------------atgaagtc-
                        Rat  --c-------------------agaaa----aa-------g----aa--------------atgaagtc-
             Naked mole-rat  --a-------------------ggaaa----ag-------c----aa--------------gtgacatg-
                 Guinea pig  --a-------------------a-aa-------------------aa--------------gtatcgtg-
                 Chinchilla  --a-------------------agaa-------------------aa--------------acaagggat
           Brush-tailed rat  --a-------------------agaa-------------------aa--------------gtgatgtg-
                     Rabbit  --a-------------------agaaa----a-------------ag--------------gtaaaatg-
                       Pika  --a-------------------caaaa----c-------------ag--------------gtaaagtg-
                        Pig  --aaaa----------------ggaaa----aaaaaaaaaa----ag--------------ctcaagtg-
                     Alpaca  --aag-------------------aaa----aa-----aaa----ag--------------ctgaagtg-
             Bactrian camel  --aaga----------------aaaaa----aa-----aaa----ag--------------ctgaagtg-
                    Dolphin  --aaga----------------aaaaa----aa-------------g--------------ctgaagtg-
               Killer whale  --aaga----------------aaaaa----aa-------------g--------------ctgaagtg-
           Tibetan antelope  --aaaa----------------gaaaa----aa-------a----aa--------------ctgaagtg-
                        Cow  --aaag----------------agaaa----aa----aaaa----ag--------------ctgaagtg-
                      Sheep  --aaag----------------aaaaa----aa-------a----ag--------------ctgaagtt-
              Domestic goat  --aaaa----------------gaaaa----aa-----ata----ag--------------ctgaagtt-
                      Horse  -----------------------aaag----aa-------a----ag--------------ctgaagtg-
           White rhinoceros  -----------------------aaagaaaaaa-------a----ag--------------gtgaagtg-
                        Cat  aaaaaa----------------aaaaa----aa-------a----aa--------------ctggagca-
                        Dog  --gaaa----------------aaaaa----aa-------a----ag--------------ctgaagtg-
                    Ferret   --aaaa----------------caaaa----ca-------a----aa--------------ctgaggtg-
                      Panda  ------------------------aaa----ga-------a----ag--------------ctgaagtg-
             Pacific walrus  -----------------------taaa----aa-------a----ag--------------cggaa----
               Weddell seal  -----------------------taaa----aa-------g----ag--------------ctgaagtg-
           Black flying-fox  -----------------------aaac----at-------t----ag--------------ctaaagtc-
                    Megabat  -----------------------aaac----at-------t----ag--------------ctaaagtc-
              Big brown bat  -----------------------aaaa----aa-------t----ag--------------ttaaagtg-
       David's myotis (bat)  -----------------------aaaa----aa-------t----ag--------------ttaaagtg-
                   Microbat  -----------------------aaaa----aa-------t----ag--------------ttaaagtg-
                   Hedgehog  ----------------------aaaga----aa-------a----at--------------cagaggtg-
                      Shrew  --cagg----------------aagct----aa-------a----a------------------------
            Star-nosed mole  --aaga----------------aaaaa----aa-------a----aa--------------aaaagctg-
                   Elephant  -----------------------aaaa----aa-------a----ag--------------ttgaagtg-
        Cape elephant shrew  -----------------------agaa----aa-------a----gggggggggagaaaatgtgaattg-
                    Manatee  -----------------------aaaa----aa-------a----ag--------------gtgaagtg-
           Cape golden mole  -----------------------aaga----aa-------a----ag--------------gtgaagtg-
                     Tenrec  --g-------------------aaagg----aa-------a----ag--------------gggaaatg-
                   Aardvark  -----------------------gaaa----aa-------a----ag--------------gggaagtg-
                  Armadillo  --a-------------------aagga----aa-------a----ag--------------gtgaagtg-
                    Opossum  --cagagt--------------aaaac----ag-------c----at--------------tcaaagtg-
                   Platypus  --cacagt--------------aaaac----ag-------c----at--------------tcaaagtc-
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  g-tgg--------------t-----------tt----------------attc--------c-tttgaaa
                      Chimp  g-tga--------------t-----------tt----------------attc--------c-tttgaaa
                    Gorilla  g-tgg--------------t-----------tt----------------attc--------c-tttgaaa
                  Orangutan  g-tgg--------------t-----------tt----------------attt--------c-tttgaaa
                     Gibbon  g-tgg--------------t-----------tt----------------attt--------c-tttgaaa
                     Rhesus  g-ggg--------------t-----------tt----------------attt--------c-tctgaaa
        Crab-eating macaque  g-ggg--------------t-----------tt----------------attt--------c-tctgaaa
                     Baboon  g-ggg--------------t-----------tt----------------attt--------c-tctgaaa
               Green monkey  g-ggg--------------t-----------tt----------------attt--------c-tttgaaa
                   Marmoset  g-tgg--------------t-----------tt----------------attt--------c-tttgaaa
            Squirrel monkey  g-cgg--------------t-----------tt----------------attt--------t-tctgaaa
                   Bushbaby  g-tct--------------t-----------tt----------gta---attt--------c-tctgaaa
         Chinese tree shrew  g-cgc--------------t-----------tt----------taaaattttt--------c-tttgaaa
                   Squirrel  a-tgt--------------t-----------tt----------taaaa-tttt--------c-tttggaa
     Lesser Egyptian jerboa  t-tgt--------------a-----------tt----------tattt-attt--------a-ttt----
               Prairie vole  g-tgt--------------a-----------tt----------ttcaa-tttt--------t-tttaaaa
            Chinese hamster  g-tat-------------aa-----------tt----------tccaa-attt--------c-gttggaa
             Golden hamster  a-tgt--------------a-----------tt----------tccaa-attt--------t-gttggga
                      Mouse  a-tat--------------a-----------at----------tttaa-atgt--------c-ttgggag
                        Rat  a-aat--------------a-----------tt----------tttaa-attt--------c-tttggag
             Naked mole-rat  g-tat--------------t-----------ta----------aaaat-attt--------c-tttggaa
                 Guinea pig  g-ttt--------------t-----------tt----------aaaaa--ttt--------c-tttggaa
                 Chinchilla  g-tat--------------t-----------ta----------aaaaa-attt--------a-tttggaa
           Brush-tailed rat  g-tat--------------t-----------tt----------aaaga-------------c-tttggaa
                     Rabbit  g-tgc--------------t-----------tc----------tttaa--ttt--------c-tttggaa
                       Pika  g-tgg--------------t-----------tc----------tttaa--ttt--------c-tttggaa
                        Pig  c-tat--------------ttttt-------tt----------tttta-attt--------c-ttcgaaa
                     Alpaca  c-tgt--------------ttttg-------tttttgtttttgttttc-attt--------c-tttgcaa
             Bactrian camel  c-tgt--------------ttttg-------tttttgttttttttaaa-attt--------c-tttgcaa
                    Dolphin  c-gtt--------------ttttt-------tt-----------aaaa-attt--------c-tttgaaa
               Killer whale  c-g-t--------------ttttt-------tt-----------aaaa-attt--------c-tttgaaa
           Tibetan antelope  c-tgg--------------gtctt-------tt----------------attt--------c-tctgaaa
                        Cow  c-tgg--------------gtctt-------tt----------------attt--------c-tctgaaa
                      Sheep  c-tgg--------------gtctt-------tt----------------attt--------c-tttgaaa
              Domestic goat  c-tgg--------------gtctt-------tt----------------attt--------c-tttgaaa
                      Horse  g-tgg--------------t-ttt-------tt----------------attt--------c-tttgaaa
           White rhinoceros  g-tag--------------t-ttt-------tt----------------attt--------c-tttgaaa
                        Cat  g----------------------t-------tt----------------attt--------cttttgaaa
                        Dog  g-tgg--------------ccttt-------tt----------------attt--------c-tttgaaa
                    Ferret   g-tgg--------------tcttt-------tt----------------attt--------c-tttgaaa
                      Panda  g-tgg--------------tcttt-------tt----------------attt--------c-tttgaaa
             Pacific walrus  g-tgg--------------tcttt-------tt----------------attt--------c-tttgaaa
               Weddell seal  g-tgg--------------tcttt-------tt----------------attt--------c-tttgaaa
           Black flying-fox  a-tgg--------------t-ttt-------tc----------------attt--------c-tttgaaa
                    Megabat  a-tgg--------------t-ttt-------tc----------------attt--------c-tttgaaa
              Big brown bat  g-tgg--------------c-ttt-------tc----------------attc--------c-tttgaaa
       David's myotis (bat)  g-tgg--------------t-ttt-------tc----------------attc--------c-tttgaaa
                   Microbat  g-tgg--------------t-ttt-------tc----------------attc--------c-tttgaaa
                   Hedgehog  a-tgc--------------ttttaaa-----aa----------------aatt--------c-tctgaaa
                      Shrew  --tgg--------------tttttaa-----ac----------------attt--------c-tcagaaa
            Star-nosed mole  agtggtaggtttttttttttttttaattttttt----------------attt--------c-tctggaa
                   Elephant  g-tgc--------------c-ttt-------tt----------------attt--------c-ttagata
        Cape elephant shrew  g-gaa--------------t-ctg-------tt----------------g--------------tagata
                    Manatee  g-tgg--------------t-ttt-------tt----------------attt--------c-ttagata
           Cape golden mole  c-tgt--------------t-ttt-------at----------------cattt-------c-ttagcta
                     Tenrec  t-tgt--------------t-gcc-------ca----------------cccccccccacac-taagata
                   Aardvark  g-t----------------t-gtt-------tt----------------attt--------c-ttagata
                  Armadillo  g-tgt--------------t-tttatta---tt----------------attt--------c-ttagaac
                    Opossum  g-t-t--------------t-----------tt----------------cttt--------c-ttagaaa
                   Platypus  a-t----------------t-----------tt----------------attt--------c-ttagaaa
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  ttcaaa-------ctggcc--ctt-----ga----acgtg-----agg-----a---aaa-ga-aa----
                      Chimp  ttcaaa-------ctggcc--ctt-----ga----acgtg-----agg-----a---aaa-ga-aa----
                    Gorilla  ttcaaa-------ctggcc--ctt-----ga----acgtg-----agg-----a---aaa-ga-aa----
                  Orangutan  ttcaaa-------ctggcc--ctt-----ga----acgtg-----agg-----a---aaa-ga-aa----
                     Gibbon  ttcaaa-------ctgacc--ctt-----ga----atgtg-----agg-----a---aaa-ga-aa----
                     Rhesus  ttcaaa-------ttgacc--ctt-----ga----acatg-----agg-----a---aaa-ga-aa----
        Crab-eating macaque  ttcaaa-------ttgacc--ctt-----ga----acatg-----agg-----a---aaa-ga-aa----
                     Baboon  ttcaaa-------tggacc--ctt-----ga----acatg-----agg-----a---aaa-ga-aa----
               Green monkey  ttaaaa-------ttgacc--ctt-----ga----acatg-----agg-----a---aaa-ga-aa----
                   Marmoset  ttcaga-------ttgaca--ttt-----ga----acggg-----agg-----a---aaa-ga-aa----
            Squirrel monkey  ttcaga-------ttgacactctt-----ga----acagg-----agg-----a---aaa-ga-aa----
                   Bushbaby  ttcagg-tt-gtcttgacc--ctt-----ga----acaggacggaagg-----a---gaa-aa-aa----
         Chinese tree shrew  ttcaga-tt-gttttgaca--ctt-----ga----actgg-----aag-----a---aag-ga-ga----
                   Squirrel  tttgga-tt-gttttgaca--ctt-----ca----acagg-----agg-----a---aag-ga-ga----
     Lesser Egyptian jerboa  ----------------act--gat-----ga----acaga-----tgt-----g---a---aa-ga----
               Prairie vole  ttcaga-ttggttttgaca--cat-----ga----cccaa-----agg-----g---aag-ag-ga----
            Chinese hamster  ttcagc-taggttttgaca--cgt-----ga----cctga-----aag-----g---aagaaa-aa----
             Golden hamster  ttcaga-ttggttt---------t-----ga----cccga-----aag-----g---aag-aa-aa----
                      Mouse  ttcaca-ttggttttgaca--act-----ga----cccga-----aag-----g---aat-aa-taataa
                        Rat  ttcacc-ttggttttgaca--act-----ga----cctga-----aag-----g---a---aa-aaataa
             Naked mole-rat  ttcaga-tt-gttttgaca--ttt-----ga----atgag-----aag-----a---aag-ca-ga----
                 Guinea pig  tttaga-tt-gttttgaca--ctc-----aa----ac-aa-----gga-----a---gag-ca-ga----
                 Chinchilla  ttcaga-tt-gttttgaca--c-----------------------aag-----a---gag-ca-ga----
           Brush-tailed rat  ttcgta-tt-gatttgaca--c-----------------------aag-----a---gag-tg-ga----
                     Rabbit  ttcagc-tt-gttttgaca--gtt-----ga----acagc-----tga-----a---aag-aa-aa----
                       Pika  tgcaca-tt-gttttgaca--gct-----ga----gcaga-----agg-----a---aag-gc-ga----
                        Pig  tttgga-gt-gttttg--a--cct-----ca----gcagg-----cag-aaagg---aga-aa-aa----
                     Alpaca  ttcaga-tt-gttttg--a--ctt-----ca----acagg-----aagaaaggagagaaa-aa-aa----
             Bactrian camel  ttcaga-tt-gttttg--a--ctt-----aa----acagg-----aagaaaggaga-aaa-aa-aa----
                    Dolphin  ttcaga-tt-gctttg--a--ctt-----ca----acagg-----aagaaaagg---aga-aa-aa----
               Killer whale  ttcaga-tt-gctttg--a--ctt-----ca----acagg-----aagaaaagg---aga-aa-aa----
           Tibetan antelope  ttcaga-tt-gctttg-------t-----ca----atagg-----aagcaaagg---agg-aa-aa----
                        Cow  ttcaga-tt-gctttg-------t-----ca----atagg-----aagcaaagg---agg-ac-aa----
                      Sheep  ttcaga-tt-gctttg-------t-----ca----atagg-----aagcaaagg---agg-aa-aa----
              Domestic goat  ttcaga-tt-gctttg-------t-----ca----atagg-----aagcaaagg---agg-ga-aa----
                      Horse  ttcaga-tt-gttctgaca--ctttcaagaa----gaaga-----aag-----g---aga-aa-aa----
           White rhinoceros  ttcaga-tt-gttttgaca--ctttc---aa----caaga-----aag-----g---aga-aa-ac----
                        Cat  ttcagactc-ttt-tgaca--ctt-----cagcaggaagg-----aag-----g---agg-aa-aa----
                        Dog  ttcagg-tt-gtg-tgtca--ctt-----ca----acagg-----aag-----g---agc-ca-ac----
                    Ferret   tttagg-tt-gtt-ggtcc--ctt-----ca----agggg-----aag-----g---agg-ga-aa----
                      Panda  ttcagg-tt-gtt-tgtcc--ctt-----ca----agagg-----aag-----g---aga-ta-aa----
             Pacific walrus  ttcagg--t-ttt-tgtcc--ctt-----ca----agagg-----acg-----g---aga-aa-aa----
               Weddell seal  ttcagg-tt-ttt-tgtcc--ctt-----ca----agagg-----acg-----g---agg-aa-aa----
           Black flying-fox  ttcaga-tt-gttttgaca--ctt-----ca----acaga-----aag-----a---aaa-ga-ga----
                    Megabat  ttcaga-tt-gttttgaca--ctt-----ca----acagg-----aag-----a---aaa-ga-ga----
              Big brown bat  ttcaga-tt-gttttgaca--ctt-----ca----acagg-----aag-----a---aag-ga-ga----
       David's myotis (bat)  ttcaga-tt-gttttgaca--ctt-----ca----acagg-----aag-----a---aag-ga-ga----
                   Microbat  ttcaga-tt-gttttgaca--ctt-----ca----acagg-----aag-----a---aag-ga-ga----
                   Hedgehog  atcagt-tg-gttttta-a--ctt-----ca----gtagg-----aaa-----g---gag-ag-ga----
                      Shrew  ttcagc-ct-ggtttgaca--ctt-----tg----ctcgg-----gaa-----t---gag-aa-ga----
            Star-nosed mole  gtcagg-tt-gttttgaca--ctt-----ta----atggg-----agg-----a---gag-ga-ga----
                   Elephant  ttcaga-at-gttttgaca--c-------ca----gcagg-----aag-----a---aag-ga-ga----
        Cape elephant shrew  ttaaga-at-gttttgaca--t-------ta----gcgcc-----aag-----a---aaa-ga-ga----
                    Manatee  ttcaga-at-attttgaca--c-------ca----gcagg-----aag-----a---aag-ga-ga----
           Cape golden mole  atcaaa-at-attttgaca--c-------ca---agcagc-----aag-----a---aag-ga-ga----
                     Tenrec  ctcaga-at-ctgtagaca--c-------ca--------------tag-----a---aag-gatgg----
                   Aardvark  ttcaga-ac-atttgcaca--c-------ca----ggagg-----aag-----a---aag-ga-ga----
                  Armadillo  ttcaga-tt-gttttgaca--ctt-----ca----gcagg-----aag-----a---aga-gg-ag----
                    Opossum  ttcaga-tc-gttttgaca--tct-----ca----cctgg-----cag-----g---aaa-gg-aa----
                   Platypus  ttcaga-tt-gttttgact--ctt-----at----gctgg-----cag-----g---tag-ag-ag----
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  -------aat--gata---------------------gataaa---------------taga--t---tt
                      Chimp  -------aat--gata---------------------gataaa---------------taga--t---tt
                    Gorilla  -------aat--gata---------------------gataaa---------------taga--t---tt
                  Orangutan  -------aat--gata---------------------gataaa---------------taga--t---tt
                     Gibbon  -------aat--gata---------------------gataaa---------------taga--t---tt
                     Rhesus  -------aat--gata---------------------gataaa---------------taga--t---tc
        Crab-eating macaque  -------aat--gata---------------------gataaa---------------taga--t---tc
                     Baboon  -------aat--gata---------------------gataaa---------------taga--t---tc
               Green monkey  -------aat--gata---------------------gataaa---------------taga--t---tc
                   Marmoset  -------aat--gaca---------------------gataaa---------------tagg--tagatc
            Squirrel monkey  -------aat--gaca---------------------gataaa---------------tagg--tagatt
                   Bushbaby  -------ggc--aata---------------------gattga---------------tgat--t---t-
         Chinese tree shrew  -------ca----aaa---------------------gctaaa---------------taga--c---t-
                   Squirrel  ------------aaaa---------------------aataga---------------ttgg--a---tt
     Lesser Egyptian jerboa  ------------gaaa---------------------aataaa---------------ctga--t---t-
               Prairie vole  -------aaagggaag---------------------ggaagc---------------tggg--c---t-
            Chinese hamster  -------aagggggaa---------------------ggcaga---------------ttgc--c---t-
             Golden hamster  -------aagggggaa---------------------ggcaga---------------ttgc--c---t-
                      Mouse  taataataataggcta---------------------ggtaga---------------ttgg--c---t-
                        Rat  taataataaaatgata---------------------ggcaga---------------ttgg--c---t-
             Naked mole-rat  -------aa---acaa---------------------aataaa---------------taga--t---t-
                 Guinea pig  -------aa---gcaa---------------------aataaa---------------tagg--t---t-
                 Chinchilla  -------aa---acaa---------------------aataaa---------------taga--t---t-
           Brush-tailed rat  -------aa---acaa---------------------aataaa---------------tacg------t-
                     Rabbit  -------aag--ataa---------------------gattga---------------ttga--t---t-
                       Pika  -------aag--acta---------------------aattga---------------ttga--g---t-
                        Pig  -------a----gata---------------------gataag---------------tcga--t---t-
                     Alpaca  -------a----gcta---------------------gataag---------------taga--t---t-
             Bactrian camel  -------a----gcta---------------------gataag---------------taga--t---t-
                    Dolphin  -------a----gata---------------------gataag---------------taga-tt---t-
               Killer whale  -------a----gata---------------------gataag---------------taga-tt---t-
           Tibetan antelope  -------a----gata---------------------gataag---------------tagattt---t-
                        Cow  -------a----gata---------------------gataag---------------taga-tt---t-
                      Sheep  -------a----gata---------------------gataag---------------tagattt---t-
              Domestic goat  -------a----gata---------------------gataag---------------tagattt---t-
                      Horse  -------a----gtta---------------------gagagg---------------taga--t---t-
           White rhinoceros  -------a----gata---------------------gagagg---------------taga--t---t-
                        Cat  -------a----aaag---------------------catacg---------------taga--t---t-
                        Dog  -------g----a------------------------gatagg---------------taaa--t---t-
                    Ferret   -------a----a---------------------------agg---------------taga--t---t-
                      Panda  -------a----a------------------------gatagg---------------tagc--t---t-
             Pacific walrus  -------a----a--t---------------------gatagg---------------taga--t---t-
               Weddell seal  -------a----a---------------------------agg---------------caga--t---t-
           Black flying-fox  -------a----aaaa---------------------gatagg---------------taga--t---t-
                    Megabat  -------a----aaaa---------------------gatagg---------------taga--t---t-
              Big brown bat  -------a----aaaa---------------------gatata---------------taaa--t---t-
       David's myotis (bat)  -------a----aaaa---------------------gataca---------------taaa--t---t-
                   Microbat  -------a----aaaa---------------------gatata---------------taca--t---t-
                   Hedgehog  -------a----aaaa--------------------------a---------------tatg--t---t-
                      Shrew  -------g----aaaa---------------------gatagg---------------tag---------
            Star-nosed mole  -------a----aaaa---------------------gcgagg---------------cagg--t---g-
                   Elephant  -------a----aaaa-----------atagaaagatgagaga---------------ttta--t---t-
        Cape elephant shrew  ----gggg----aaat-----------acaaatagatgacaca---------------tttc--t---t-
                    Manatee  -------a----aaaatatagatag--acagaaagatgataga---------------ttta--t---t-
           Cape golden mole  -------a----acaatatagatggatagagagatgtcaggtc---------------ttta--t---g-
                     Tenrec  -------g----aaaatatagatagaaacatagagat---gta---------------tttc--t---t-
                   Aardvark  -------a----aaaa--------gagagagaaagatgataga---------------ttta--t---t-
                  Armadillo  -------a----aaaatgtag------gtagatgatcgattga---------------ttta--t---t-
                    Opossum  -------at---aaaa---------------------aacaaaggaggatagctttttcaga--t---t-
                   Platypus  -------a----acaa---------------------aagagg------ctacttttttgga--t---t-
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  cgtttttgagttag-atgacaaagcag-ca-gcaatcaag---gaggaaaa-a-taagaatgaaaaagct
                      Chimp  cgtttttgagttag-atgacaaagcag-ca-gcaatcaaa---gaggaaaa-a-taagaatgaaaaagct
                    Gorilla  cgtttttgagttag-atgacaaagcag-ca-gcaatcaag---gaggaaaa-a-taagaatgaaaaagct
                  Orangutan  agtttttgagttag-atgacaaagcag-ca-gcaatcaag---gaggaaaa-a-taagaatgaaaaagct
                     Gibbon  cgttttcgagttag-atgacaaagcag-ca-gcaatcaag---gaggaaaa-a-taagaatgaaaaagct
                     Rhesus  gattttt-agttag-atgacaaaacag-ca-gcaatcaag---gaggaaaa-a-taagaatgaaaaagct
        Crab-eating macaque  gattttt-agttag-atgacaaaacag-ca-gcaatcaag---gaggaaaa-a-taagaatgaaaaagct
                     Baboon  gattttt-agttag-atgacaaaacag-ca-gcaatcaag---gaggaaaa-a-taagaatgaaaaagct
               Green monkey  gattttt-agttag-atgacaaaacag-ca-gcaatcaaa---gaggaaaa-a-taagaatgaaaaagct
                   Marmoset  ggtttttgagttag-atgacaatgcag-ca-gcaatcaag---aaagaaaa-g-gaagaatgaaaaagct
            Squirrel monkey  ggtttttgagttag-atgacaacgcag-ca-gcaatcaag---gaggaaaa-a-gaagaatgaaaaagct
                   Bushbaby  --ttctggagttag-atgacaa---ag-ca-gaaatcaag---ggtgaaaa-t-taagaatgaaaaagct
         Chinese tree shrew  gatttttgagttag-atgacaa---ag-ta-gcaataaga---gggaaaaa-a-taagaatgaaaaggct
                   Squirrel  gg-attgaagttag-atgaaag---ag-ga-gcaatcaga---g-gaaaaa---taaaaatggaaaagct
     Lesser Egyptian jerboa  ----tttgagttaa-atgacaa---aa-ca-aagatcaaa---gaagaaag---tgatgatgtaaaggcc
               Prairie vole  ----ttcgagttag-ataacaa---aa-cg-aagatcaga---gaggaata---tgagaatgaaaaagct
            Chinese hamster  ----ttggagttagaatgacaa---ag--c-aaggtcaga---gaggaatc---tgaagatgaaaaagct
             Golden hamster  ----ttggagatag-atgacaa---aa-tc-aaaatcaga---gaggagta---tgagaatgataaagct
                      Mouse  ----tttgagctag-atgacaa---aa-ct-gagatcata---ggggaata---tgagcatgaaaaggct
                        Rat  ----tttgagttag-atgacaa---aa-cc-tagattata---gaggaata---tgagcatgaaaaggct
             Naked mole-rat  ----tttgagttag-atggtaa---ag-cg-gcaatcaaa---gaagaaca-g-taaggatgaaaaagct
                 Guinea pig  ----tttgagttag-atgacaa---ag-ca-gcaatcaaa---gaagaaca-a-taagaacgacaaagct
                 Chinchilla  ----tttgagttag-atgacaa---aa-ca-gcaatgaaa---aaagaaca-a-taaggatgaaaaggct
           Brush-tailed rat  ----tttgagttag-atgaaaa---aa-ta-gcactcaaa---acagaaca-g-taagcctgaaaaggct
                     Rabbit  ----ttg-agttag-atgagaa---ag-ca-gcaatcaga---gaaa-aca---tgagaatgaagtagct
                       Pika  ----ttgaagttac-atgacaa---ag-ca-acagtaaga---gaaagaca---taagaataaagtaact
                        Pig  ----tttgagttag-atgccaa---aa-ta-gtaatcagg---aaggaaaa-a-gaagagtgaaatagct
                     Alpaca  ----tttgagtttg-atgacaa---aa-ta-gcaatcagg---gaggtaaa-a-taagaatgaaatcgct
             Bactrian camel  ----tttgagtttg-atgccaa---aa-ta-gtaatcagg---gaggtaaa-a-taagaatgaaatcgct
                    Dolphin  ----tttgagttag-atgccaa---aa-ta-gcaatcagg---gaggaaaa-a-taagaatgaaatagct
               Killer whale  ----tttgagttag-atgccaa---aa-ta-gcaatcagg---gaggaaaa-a-taagaatgaaatagct
           Tibetan antelope  ----tttgagttag-atgccaa---aatta-gcagtcagg---gagaaaaaga-taagaatgaaatagct
                        Cow  ----tttgagttag-atgccaa---aa-ta-gcagccaag---gaggaaaaga-taagaatgaaatagct
                      Sheep  ----tttgagttag-atgccaa---aacta-gcagtcagg---gaggaaaaga-taagaatgaaatagct
              Domestic goat  ----tttgagttag-atgccaa---aatta-gcagtcagg---gaggaaaaga-taagaatgaaatagct
                      Horse  ----tttgagttag-acgacaa---aa-ca-acaatcagc---gagggaaa-a-taagaatg-aaaagct
           White rhinoceros  ----tttgacttag-atgacaa---aa-ca-gcagtcagc---gaggaaaa-a-taagaatg-aaaagct
                        Cat  ----tgtgagttag-atgacaa---a--ca-gcgatcaag---gaggaaac-g-taagaaag-aaaagct
                        Dog  ----tttgagtgag-atgacag---g--caggcagtggag---gaggaaaa-a-taagaagg-aagagat
                    Ferret   ----tttgagttag-atgacaa---a--ca-gcaatcaag---aagggaaa-a-gaagaagg-aaacgct
                      Panda  ----tttgagttag-atgaaga---a------caatcagg---gaggaaga-a-taagaagg-aaacgct
             Pacific walrus  ----tttgagttag-atgacaa---a--ca-gcaatcaag---gaggaaaa-a-taagaagg-aaacgct
               Weddell seal  ----tttgagttag-atgacaa---a--ca-gcaatcaag---gaggaaaa-a-taagaagg-aaacgct
           Black flying-fox  ----attgagttgg-atgacaa---aa-ca-gtaatccaggaccaaaaaaa-a-tgagatagaaaaagct
                    Megabat  ----attgagttgg-atgacaa---aa-ca-gtaatccaggaccaaaaaaa-a-tgagatagaaaaagct
              Big brown bat  ----ttcgagctag-atgacaa---ag-ca-tcaatccag---taagaaaa-a-taagaatgaaaaagct
       David's myotis (bat)  ----ttcaagctag-atgacaa---ag-ca-tcaatccag---taggaaaa-a-taagaatgaaaaagct
                   Microbat  ----ttcaagctag-atgacaa---ag-ca-tcaatccag---taagaaaa-a-taagaatgaaaaagct
                   Hedgehog  ----tctgagttag-atggcaa---aa-ca-gcaatcaga---gaagaaaa-a-taagaatgaattaact
                      Shrew  ----------------------------------------------------------------------
            Star-nosed mole  ----tttcggtgag-atgacaa---ag-ca-gcaatcagg---gaggaaaa-a-taagactgaaaatatt
                   Elephant  ----tttaactcag-ataacaa---ag-ta-gcaatcaag---gaggaaaa-a-taagaatgaaaactct
        Cape elephant shrew  ----ttctaattaa-ataacaa---ag-ta-gtaatcag----------------aagagtgaaaaatct
                    Manatee  ----tttaagtcag-ataacaa---ag-ta-gcaatcagg---gaggaaaa-a-taagaatgaaaaatct
           Cape golden mole  ----tttaagttag-ataagaa---ag-ta-gtaatccgg---gagaaaaa-a-gaggaatgaaaaatct
                     Tenrec  ----tttaagttgg-aggacag---ag-ta-gtaaggagg---ggggcaag-a--agaaatg---aatct
                   Aardvark  ----tttaagggag-atgacag---ag-ta-gtaatcagg---gaaaaaaa-aaaaagaatgaaaaatct
                  Armadillo  ----tttgcgttag-atgacaa---ag-ca-gaaatcagg---gaggaaaa-g-aaagaatgaagaagct
                    Opossum  ----tttcaattag-atgaaag---ag-ca-gcaacctgg---gaagaaac-a-taagaaggcaaaatct
                   Platypus  ----tttgagttag-atgaaag---ca-ca-actgcctca---aagggaaa-a-taagaa---gaaatct
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  t---aaaagaaagt-------------------------cctcaag----atgggc---ca---ttttcc
                      Chimp  t---aaaagaaagt-------------------------cctcaag----atgggc---ca---ttttcc
                    Gorilla  t---aaaagaaagt-------------------------cctcaag----atgggc---ca---ttttcc
                  Orangutan  t---aaaagaaagt-------------------------cctcaag----atgggc---ca---ttttcc
                     Gibbon  t---aaaagaaagt-------------------------cctcaag----atgggc---ca---ttttcc
                     Rhesus  t---aaaagaaagt-----------------------------------------c---ca---ttttcc
        Crab-eating macaque  t---aaaagaaagt-----------------------------------------c---ca---ttttcc
                     Baboon  t---aaaagaaagt-------------------------cctcagg----atgggc---ca---ttttcc
               Green monkey  t---aaaagaaagt-------------------------cctcaag----atgggc---ca----tttcc
                   Marmoset  t---aaaagaaagt-------------------------ccacagg----atgggc---ca---ttttcc
            Squirrel monkey  t---aaaagaaagt-------------------------ccacagg----atgggc---ca---ttttcc
                   Bushbaby  t---agaagcaagt-------------------------ccacaag----aggggc---ca---cgttcc
         Chinese tree shrew  tgaaaaaaaaaagt-------------------------ctgca-g----atgggt---ca---tttccc
                   Squirrel  t---attagaaagt-------------------------ctacaaa----acaggt---tc----tttcg
     Lesser Egyptian jerboa  t---gttagaaagt-------------------------ca--gaag---gtaagc---ca----tttcc
               Prairie vole  t---atttgaaagt-------------------------ctctgaag---ataaac---ca----ttccc
            Chinese hamster  t---attggaaact-------------------------cttcaaag---ggaagc---ca----ttgca
             Golden hamster  t---attcgaaact-------------------------cttcaaag---ataagc---ca----ttcca
                      Mouse  t---att--agagt-------------------------cattgaaa---ataagc---ca----ttccc
                        Rat  t---attacaaaat-------------------------cgttgaag---ataagc---ca----ttcct
             Naked mole-rat  t---tttggaaagt-------------------------gtatgac----atgggc---ca----cttcc
                 Guinea pig  t---gctggaaagt-------------------------atatgac----ctgggc---ca----cttcc
                 Chinchilla  t---gttggaaagt-------------------------atacacc----atgggt---ca----cttcc
           Brush-tailed rat  g---gctggaaagt-------------------------gtacaac----gggggt---ca----ctttc
                     Rabbit  t---a----aaaga-------------------------acatccagaatatgggc---ca---tttttc
                       Pika  t--------aaagt-------------------------ccacccag-----gggc---cg---ttttcc
                        Pig  t---aaaagaaagt-------------------------tgacaag----atgggc---ca---tttttc
                     Alpaca  t---taaagaaagt-------------------------tgacaag----atgggc---ca---tttttc
             Bactrian camel  t---taaagaaagt-------------------------tgacaag----atgggc---ca---tttttc
                    Dolphin  t---taaagaaagt-------------------------tgacaaa----atgggc---ca---tttttt
               Killer whale  t---taaagaaagt-------------------------tgacaaa----atgggc---ca---tttttt
           Tibetan antelope  t---taaagaaagt-------------------------tggtaag----aggggc---ca---tttttt
                        Cow  t---taaagaaagt-------------------------tggtaag----aggggc---ca---tttttt
                      Sheep  t---taaagaaagt-------------------------tggtaag----aggggc---ca---tttttt
              Domestic goat  t---taaagaaagt-------------------------tggtaag----aggggc---ca---tttttt
                      Horse  t---aaaagaaagt-------------------------ccagaag----atgggc---tg---tttttc
           White rhinoceros  t---aaaagaaagt-------------------------ccagaag----atgggc---ca---tttttc
                        Cat  t---taaagaaaac-------------------------ccacaag----atgggc---ca---tttttc
                        Dog  t---aaaagaaagc-------------------------tcacaag----atgggc---ca---tttttc
                    Ferret   t---aaaagaaagc-------------------------tctcaag----atgggc---ca---tttttc
                      Panda  t---taaagaaagc-------------------------tcgca--------gggc---ca---tttttc
             Pacific walrus  t---aaaagaaagc-------------------------tcgcaag----atgggc---ca----ttttc
               Weddell seal  t---aaaagaaagc-------------------------tcacaag----atgggc---ca----ttttc
           Black flying-fox  t---aaaa-aaagt-------------------------ccacaaa----atagac---cattttttttt
                    Megabat  t---aaaagaaagt-------------------------ccacaaa----atggac---ca-tttttttt
              Big brown bat  t---caaagaaagt-------------------------ccacaag----atggac---ca--ttttttt
       David's myotis (bat)  t---caaagaaagt-------------------------ccacaag----atggac---ca---tttttt
                   Microbat  t---caaagaaagt-------------------------ccacaag----atggac---ca---tttttt
                   Hedgehog  t---gagaggaaat-------------------------gcacaag----ataggc---ca---tttttc
                      Shrew  --------------------------------------------------ctaggc---ca-tttttttc
            Star-nosed mole  t---aaaagaaagt-------------------------ccgtcac----atgggc---ca---tttttc
                   Elephant  t---aaaagaaagt-------------------------ccacatg----atggacagttt--ttttttc
        Cape elephant shrew  t---taaagaacat-------------------------ccacagg----atgga----tt--gtttttc
                    Manatee  t---aaaaagaagt-------------------------ccacaag----atggac---ca--ttttttc
           Cape golden mole  t---aaaagaaagt-------------------------ctacaag----atggac---ca---tttttc
                     Tenrec  t---aaaagaaaga-------------------------ccaccag----atggac---ca--ttttttc
                   Aardvark  t---aaaagaaatt-------------------------ccacaag----gtggac---ca---tttttc
                  Armadillo  t---agaagatggt-------------------------cctcaag----atggtc---ca-----tttc
                    Opossum  t---gaaagaaagtcagctctggttattactgtgccgttcctcagg----atgtag---ca---tttatc
                   Platypus  t---gaaagaaagt------------------------------ga----atgggc---ta---tttgtg
            Tasmanian devil  ======================================================================
         American alligator  ======================================================================

                      Human  -caagttg-----------aacatgtctgc---t
                      Chimp  -caagttg-----------aacatgtctgc---t
                    Gorilla  -caagttg-----------aacatgtctgc---t
                  Orangutan  -caagttg-----------aacatgtctgc---t
                     Gibbon  -caagttg-----------aacatgtctgc---t
                     Rhesus  -caagttg-----------aacatgtctgc---t
        Crab-eating macaque  -caagttg-----------aacatgtctgc---t
                     Baboon  -caagttg-----------aacatgtctgc---t
               Green monkey  -caagttg-----------aacatgtctgc---t
                   Marmoset  -caagttg-----------aacatgtctgc---t
            Squirrel monkey  -caagttg-----------aacatgtctgc---t
                   Bushbaby  -caagttg-----------aacatgtctgc---t
         Chinese tree shrew  -taagttg-----------aacatgtctgc---t
                   Squirrel  -caagttg-----------aacatgtctgc---t
     Lesser Egyptian jerboa  -taagttg-----------aacatgtctgc---t
               Prairie vole  -caaatta-----------aacatgtctgc---t
            Chinese hamster  -cagattg-----------aacatgtctgc---t
             Golden hamster  -caaattg-----------aacatgtctgc---t
                      Mouse  -caagttg-----------aacatgtctgc---t
                        Rat  -caagttg-----------aacatgtctgc---t
             Naked mole-rat  -taagttg-----------aacatgtctga---t
                 Guinea pig  -taagttg-----------aacatgtctgc---a
                 Chinchilla  -taagttg-----------aacatgtctgc---t
           Brush-tailed rat  -taagttg-----------agtgtgtctgc---t
                     Rabbit  -aaagttg-----------aatatgtctgc---t
                       Pika  -taagttg-----------aacatgtctgc---t
                        Pig  ccaagctg-----------aaaatgtctgc---t
                     Alpaca  -caagctg-----------aaaatgtctgc---t
             Bactrian camel  -caagctg-----------aaaatgtctgc---t
                    Dolphin  -caagctg-----------aaaatgtctgc---t
               Killer whale  -caagctg-----------aaaatgtctgc---t
           Tibetan antelope  ccaagctg-----------aaaatgtctgc---t
                        Cow  ccaagctg-----------aaaatgtctgc---t
                      Sheep  ccaagctg-----------aaaatgtctgc---t
              Domestic goat  ccaagctg-----------aaaatgtctgc---t
                      Horse  -caagctg-----------aaaatgtctgc---t
           White rhinoceros  -taagctg-----------aaaatgtctgc---t
                        Cat  -caagctg-----------aaaatgtccgc---t
                        Dog  -caagcca-----------aaaatgtctgc---g
                    Ferret   -caagcca-----------aaaatgtctgc---g
                      Panda  -caagcca-----------aaaatgtctgc---g
             Pacific walrus  -caagcca-----------gaaatgtctgc---g
               Weddell seal  -caagcca-----------gaaatgtctac---g
           Black flying-fox  -caagctg-----------aaaatgtctgc---t
                    Megabat  -caagctg-----------aaaatgtctgc---t
              Big brown bat  -cagtcta-----------aaaatgtctgc---t
       David's myotis (bat)  -cagtctg-----------aaaatgtctgc---t
                   Microbat  -cagtctg-----------aaaatgtctgc---t
                   Hedgehog  -taaactg-----------aaaatgtctgc---t
                      Shrew  -caaatgg-----------aaaatgtctgc---t
            Star-nosed mole  -caagctg-----------aaaatgtctgc---t
                   Elephant  -caggctg-----------atcatgtctgc---t
        Cape elephant shrew  -caggatg-----------aacatgcctgcggtt
                    Manatee  -caggctg-----------aacatgtctgc---t
           Cape golden mole  -caggttg-----------aacaagcctgc---t
                     Tenrec  -cctactg-----------agtaggtgtgc---t
                   Aardvark  -caggttg-----------agcatgtctgc---t
                  Armadillo  -c-------------------caagtctgc---t
                    Opossum  -catg---------------acatttttcc---t
                   Platypus  -taagttgcatcaccttctgaggcctctac---t
            Tasmanian devil  ==================================
         American alligator  ==================================

Inserts between block 7 and 8 in window
B D                Opossum 57630bp

Alignment block 8 of 118 in window, 140710850 - 140710900, 51 bps 
B D                   Human  ggtagcatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D                   Chimp  ggtagcatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D                 Gorilla  ggtagcatgttttgcag----atg-----ga------a-aggga---gagaacatactggaggc------
B D               Orangutan  ggtaacatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D                  Gibbon  ggtagcatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D                  Rhesus  ggtagcatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D     Crab-eating macaque  ggtagcatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D                  Baboon  ggtagcatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D            Green monkey  ggtagcatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D                Marmoset  ggtagcatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D         Squirrel monkey  ggtagcatgttttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
B D                Bushbaby  ggtagcatgtcttgcag----agg-----ga------a-aggga---gagaacatactggaggc------
         Chinese tree shrew  ggcagcatgt-ttgctg----gag-----ga------a-aggga---gagagcatgtcgaaggc------
B D                Squirrel  ggtagcatgttttgcag-----gg-----ga------a-aggga---gagagtgtattgaaggc------
     Lesser Egyptian jerboa  gggggcatgttttgcag-----ag-----ga------a-aggga---gagaacatgttgaaggt------
               Prairie vole  ggggtcatagttttcag------g-----ga------a-aggga---gcctgcatgatgaaggt------
B D         Chinese hamster  gggggcat-gtttgcag------g-----ga------g-aggga---g-ctgcatggtg-aggt------
             Golden hamster  gggggcat-acttgcag------g-----ga------a-aggga---g-ctgcatgacgaagat------
B D                   Mouse  gggggtatgttttgca-------g-----ga------a-aggga---a-cagcgtgtt----ga------
B D                     Rat  -ggggtatgttttgcag------g-----ga------a-aggga---a-cagcatgtt--aaga------
B D          Naked mole-rat  ggtagcatgttttacag-----gg-----aa------c-aggga---gagagcatggtgaaggc------
B D              Guinea pig  ggtagcgtgttttgcag-----gg-----ga------c-aggga---gagagcatgttgaaggc------
                 Chinchilla  ggtagcatgttctgcag-----gg-----ga------c-aggga---gagagcatgttaaaggc------
           Brush-tailed rat  ggtaacagtttttgtag-----gg-----ga------c-aggaa---aagaatatgttgaagga------
B D                  Rabbit  ggtagcatgttttgcag----ggg-----ag------a-aggga---gagagtatgttgaaggc------
B D                    Pika  ggtagcatgttttgcag----ggg-----ga------a-aggga---gagcgtatgttgaaggc------
B D                     Pig  ggtggcatgttttgtgg----gag-----aa---------------------------------------
B D                  Alpaca  ggtggcatgttttgcag----gag-----aa------a-ggggg---gagagcaggaggaaggc------
             Bactrian camel  ggtggcatgttttgcag----gag-----aa------a-ggggg---gagagcaggatgaaggc------
B D                 Dolphin  ggtggcatgttttgcag----gag-----ga------a-aaggg---gggagcatgatgcaggc------
               Killer whale  ggtggcatgttttgcag----gag-----ga------a-aaggg---gggagcatgatgcaggc------
           Tibetan antelope  ggtggcatgttttgcag----gag-----gt------g-gtggg---gagagtgtgatgaagca------
B D                     Cow  ggtggcatgttttgcag----gag-----gt------g-gtggg---gagagtgtgatgaagcc------
B D                   Sheep  ggtggcatgttttgcag----gag-----gt------g-gtggg---gagattgtgatgaagca------
              Domestic goat  ggtggcatgttttgcag----gag-----gt------g-gtggg---gagagtgtgatgaagca------
B D                   Horse  ggtagcctgttttgca-----ggg-----ga------a-atggg---gagagcatgttgaaggc------
B D        White rhinoceros  ggtggcatgttttgcag----ggg-----ga------a-agggg---gacagcatgttgaaggc------
B D                     Cat  ggtggcatattttgcac----ggg-----ga------g-taggg---gagagcgtgccgaaggc------
B D                     Dog  ggtggcatgttttgcaa----ggg-----ggacggggg-ggggg---gtgaatttgttccaagc------
B D                 Ferret   ggtggcatgttttgcag----ggg-----gtgc--tgg-tgggg---gagagtgtgttaaaggc------
B D                   Panda  ggtagcatgttttgcag----ggg-----gt------g-tgggg---gagagcatgttaaaggc------
             Pacific walrus  ggtagcatgttttgcag----ggg-----ga------g-tgggg---gagagctggctaaatgc------
               Weddell seal  ggtagcatgttttgcag----ggg-----ga------g-tgggg---gaaagcttgctaaatgc------
           Black flying-fox  gatagcatgttttgcag----ggg-----ga------a-aaggg---gagaacatgttgaaggc------
B D                 Megabat  gatagcatgttttgcag----ggg-----ga------a-aaggg---gagagcatgttgaaggc------
              Big brown bat  ggtagcatgttttgcag----gag-----aa------a-agggg---gagagtgtgttgaaggc------
       David's myotis (bat)  ggtagcatattttgcag----ggg-----ga------a-agggg---gagagtgtgttgaaggc------
B D                Microbat  ggtagcatattttgcag----ggg-----ga------a-agggg---gagagtgtgttgaaggc------
B D                Hedgehog  ggtggtatgttttgcag----gag-----ga----gat-ctgtg--agggagcatgttgacagc------
B D                   Shrew  gatggcgtctttttcgg----ggg-----gg--------ctgcg---gggagca----------------
            Star-nosed mole  ggcagcgtgtcttgcag----gga-----ag----------ggg---gagagcatgttgacgcc------
B D                Elephant  ggtagcatgttttgcag----ggg-----ga------a-ggggg---gaaagcatgctgatggc------
        Cape elephant shrew  ggtggcaggttttgctt----gag-----gg------a--gggg---gccagcaaactaaaagcgtcgtg
B D                 Manatee  ggtagcatgttttgcag----gag-----gg------gaggggg---gaaagcgtgctgatggc------
           Cape golden mole  ggtggtatgatttgcag----gga-----ag------a-agggg---gaaagcgcactggag--------
B D                  Tenrec  ggtggcatgttttgccg-gatgga-----gg------g-ggggg---ggcagtgggctgaag--------
                   Aardvark  ggtggcatgttttgcaggggtggg-----gg------t-gggggacagagagcaggcagaaggc------
B D               Armadillo  ggtagcatgttttgcag----ggg-----ct------a-ggtgg---ggaagcaggttgaaggc------
B D                Platypus  ggtggtagtggttatgg----aaaactctgc------t-tggaa---aaaaaaaaactgtaaca------
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D      American alligator  ======================================================================

                      Human  -a------aaggg
                      Chimp  -a------aaggg
                    Gorilla  -a------aaggg
                  Orangutan  -a------aaggg
                     Gibbon  -a------aaggg
                     Rhesus  -a------aaggg
        Crab-eating macaque  -a------aaggg
                     Baboon  -a------aaggg
               Green monkey  -a------aaggg
                   Marmoset  -a------aaggg
            Squirrel monkey  -a------aaggg
                   Bushbaby  -t------ggggg
         Chinese tree shrew  -a------aaggg
                   Squirrel  -a------gggag
     Lesser Egyptian jerboa  -a------gaggg
               Prairie vole  -gtgtggtggggg
            Chinese hamster  -a------gaggg
             Golden hamster  -a------gaggg
                      Mouse  -a------ggggg
                        Rat  -g------ggggg
             Naked mole-rat  -a------gaggg
                 Guinea pig  -a------gaggg
                 Chinchilla  -a------gaggg
           Brush-tailed rat  -a------gaggg
                     Rabbit  -a------aaggg
                       Pika  -a------aaggg
                        Pig  ---aa---gaggg
                     Alpaca  -atag---gaggg
             Bactrian camel  -atag---gaggg
                    Dolphin  -atag---gaggg
               Killer whale  -atag---gaggg
           Tibetan antelope  -atag---gaggg
                        Cow  -atag---gaggg
                      Sheep  -atag---gaggg
              Domestic goat  -atag---gaggg
                      Horse  -a------gagag
           White rhinoceros  -a------aaggg
                        Cat  -a------gaggg
                        Dog  -c------aaagg
                    Ferret   -a------aaggg
                      Panda  -a------aaggg
             Pacific walrus  -a------aaggg
               Weddell seal  -a------aaggg
           Black flying-fox  -a------aaggg
                    Megabat  -a------aaggg
              Big brown bat  -a------aaggg
       David's myotis (bat)  -a------aagag
                   Microbat  -a------aaggg
                   Hedgehog  -a------aaggg
                      Shrew  --------aaggt
            Star-nosed mole  -g------gaggg
                   Elephant  -a------gaggg
        Cape elephant shrew  tg------tgggg
                    Manatee  -a------gaggg
           Cape golden mole  -g------ggggt
                     Tenrec  -g------ggagg
                   Aardvark  -a------gaggg
                  Armadillo  -a------aagag
                   Platypus  -g------gaggg
            Tasmanian devil  =============
                    Opossum  =============
         American alligator  =============

Inserts between block 8 and 9 in window
B D               Platypus 18857bp

Alignment block 9 of 118 in window, 140710901 - 140711158, 258 bps 
B D                   Human  ag-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D                   Chimp  ag-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D                 Gorilla  ag-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D               Orangutan  ag-ggggcgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D                  Gibbon  ag-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D                  Rhesus  ag-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D     Crab-eating macaque  ag-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D                  Baboon  ag-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D            Green monkey  ag-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D                Marmoset  ag-ggggtgctg--aac--a--gagca----ctgcg-gcaaagcgagt-actgacgcatccagggacatg
B D         Squirrel monkey  ag-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D                Bushbaby  gg-ggggtgttg--aac--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
         Chinese tree shrew  ag-ggggcgttg--agc--a--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D                Squirrel  gg-g-ggcatc---agc--a--gagca----ctgcg-gcaaagagagtgactgacgcatctagggacatg
     Lesser Egyptian jerboa  ag-g-ggtgtc---agc--t--gagca----ctgcg-gcaaagag--tgactgacgcatccaaggacatg
               Prairie vole  gg-gggacatc---agg--a--gagca----ctgcg-gcaaaggg--tgactgacgcatccagggacatg
B D         Chinese hamster  ag-ggggcatc---agc--a--cagca----ctgcg-gcaaagag--ggactgacgcatccaaggacatg
             Golden hamster  ag-ggggcatc---agc--a--gagca----ctgcg-gcaaagac--tgactgacgcatccagggacatg
B D                   Mouse  gg-ggggcatc---agc--a--aagca----ctgcg-gcaaagag--tgactgacgcatccagggacatg
B D                     Rat  gg-gtggcatc---agc--a--aggca----ctgcg-gcaaagag------tgacgcatccagggacatg
B D          Naked mole-rat  ag-ggggcatc---agc--a--gagca----ctgcg-gctaagagagtgactgacgcatctagagacatg
B D              Guinea pig  ag-ggggcgtc---agc--a--gagca----ctgcg-gcaaagagactgactgatgcatctagggacatg
                 Chinchilla  tg-ggggcatc---agc--a--gggca----ctgca-gcaaagagagcgactgatgcatctggggacatg
           Brush-tailed rat  ag-gggggatg---agc--a--gagca----ctgcg-gcaaagagagtcactgatgcatctagggacatg
B D                  Rabbit  a--ggggcatca--agc--a--cagca----ctgcg-gcaaagag----agtgacgcatccagggacatg
B D                    Pika  ag-ggggcgtca--agc--a--taaca----ctgcg-gc--agag----agtgatgcatccagggacatg
B D                     Pig  agggggccgttg--aac--a--cagca----ctgcg-gcaaagagaatgactgacgcgtccagggacatg
B D                  Alpaca  aggggggcgtt-------------gca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
             Bactrian camel  aggggggcgtt-------------gca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
B D                 Dolphin  aggggggcgttg--aac--a--gagca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
               Killer whale  aggggggcgttg--aac--a--gagca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
           Tibetan antelope  aggggggcttcg--aac--a--gagca----ctgcg-gcaaagaggatgactgacatatccagggacacg
B D                     Cow  aggggggcttcg--aac--a--gagca----ctgcg-gcaaagaggatgactgacacatccagggacacg
B D                   Sheep  aggggggcttcg--aac--a--gagca----ctgcg-gcaaagaggatgactgacacatccagggacacg
              Domestic goat  aggggggcttcg--aac--a--gagca----ctgcg-gcaaagaggatgactgacacatccagggacacg
B D                   Horse  agtggggggttg--aac--a--gagca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
B D        White rhinoceros  agtgggaggttg--aac--a--gagca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
B D                     Cat  aggggggcattg--aac--t--gagca----ctgcg-gcagagagaatgactgacgcatcctgggacatg
B D                     Dog  aggggggcattg--cac--tgagagca----ctgcg-gcagagagaatgactggcgcatccagggacatg
B D                 Ferret   aggggggcattg--gac--g--gagca----ctgcg-gcaaagagagtgactgacgcatccagggacatg
B D                   Panda  aggggggcattg--aac--t--gagca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
             Pacific walrus  agggggaagttg--aac--t--gagca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
               Weddell seal  agggggaagttg--aac--t--gagca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
           Black flying-fox  ag-ggggtgttg--aacaga--gagca----ctgcg-gcaaagagaataactgacgcatccggggacatg
B D                 Megabat  ag-ggggtgttg--aacaga--gagca----ctgcg-gcaaagagaataactgacgcatccggggacatg
              Big brown bat  cg-gcagtgttg--aac--a--gagca----ctgcg-gcaaagagaatgactgacgcatccaggaacatg
       David's myotis (bat)  ag-gcagtgttg--aac--a--gagca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
B D                Microbat  ag-gcagtgttg--aac--a--gaaca----ctgcg-gcaaagagaatgactgacgcatccagggacatg
B D                Hedgehog  ag-ggggtgttgatcac--a--gagca----ctgcg-gcaaagaggatgactgacgcatctagggacatg
B D                   Shrew  gg-agtgtgttg--tgc--a--gagca----ctgcg-gcaaagagaatgactgacgcatccaggaacacg
            Star-nosed mole  ag-ggt-tgctg---ac--a--gagcg----ctgcg-gc--agagaatgactgacgcatccggagacatg
B D                Elephant  aggggggcgttg--agc--a--gagca----ctgcaagcaaagagaatgactgatgcatccagggacacg
        Cape elephant shrew  tggggggttgta--agt--a--gagcaagcgctgcg---acagagaatgactgacacatccag-------
B D                 Manatee  aggggggcgttg--agc--a--gagca----ctgcg-gcaaagagaatgactgacacatccacggacatg
           Cape golden mole  gggggggtgttg--agc--a--gagaa----ctgcg-gcaaagagaa----tgacacatctggggccatg
B D                  Tenrec  gagggagcgttg--agc--a--aagca----ctgcg-gcagagagagtgactgacgcatccagggacatg
                   Aardvark  ggggaggcgttg--agt--g--gagca----ctgcg-gcagagagaatgactgacgcatcccg-gacatg
B D               Armadillo  tgggggacaagg--aga--a--gagtt----ctgca-gcataaagaatgactgatgcatccaaggacatg
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D                Platypus  ======================================================================
B D      American alligator  ======================================================================

                      Human  tgaccattctctggtgtagcgaag-aaaatttgccaggactccatcttgtataagacattctatacatac
                      Chimp  tgaccattctctggtgtagcgaag-aaaatttgccaggactccatcttgtataagacattctatacatac
                    Gorilla  tgaccattctctggtgtagcgaag-aaaatttgccaggactccatcttgtataagacattctatacatac
                  Orangutan  tgaccattctctggtgtagcgaag-aaaatttgccaggactccatcttgtataagacattctatacatac
                     Gibbon  tgaccattctctggtgtagtgaag-aaaatttgccaggactccatcttgtataagacattctatacatac
                     Rhesus  tgaccattctctggtgtagcgaag-aaaatttgccaggactccatcttgtataagaaattctatacatac
        Crab-eating macaque  tgaccattctctggtgtagcgaag-aaaatttgccaggactccatcttgtataagaaattctatacatac
                     Baboon  tgaccattctctggtgtagcgaag-aaaatttgccaggactccatcttgtataagaaattctatacatac
               Green monkey  tgaccattctctggtgtagcgaag-aaaatttgccaggactccatcttgtataagaaattctatacatcc
                   Marmoset  tgaccattctctggtgtggcgaag-aaaatttgccaggactccatcttgtataagaaattctatacatac
            Squirrel monkey  tgaccattctctggtgtggcgaag-aaaatttgccaggactccatcttgtataagaaattctatacatac
                   Bushbaby  tgacggttctctggtgtagtgaag-aaaattttccatgactccatcttgtagaagaaatcctatacatac
         Chinese tree shrew  tgactgctctctggtgtagtgaag-aaaattttccaggactccatcttgtagaagaaattctatacatac
                   Squirrel  tgactgttctctggtgtagtgaag-aaaaatttccaggactccatcttgtataagaaattctatacatac
     Lesser Egyptian jerboa  tgaccattctcccgtgtagtgaag-aaaaatttccatgactccatcttgtatgagaaattctatacatac
               Prairie vole  tgaccattctctggtgtagtgaag-aaaaattttcaggactccatcttgtataagaaattctatacatcc
            Chinese hamster  tgaccattctctgattgagtgaag-aaaaatttccaggactccatcttgtataaggaattctatacatcc
             Golden hamster  tgaccattctctgatgtagtgaag-aaaaatttccaggactccatcttgtataagaaattctatacatcc
                      Mouse  tgatcattctctggtgtagtgaag-aaaaatttccaggactccatcttgtataagaaattctatacattc
                        Rat  tgactgttctgtggtgtagtgaag-aaaaatttccaggactccatcttgtataagaaattctgtacatct
             Naked mole-rat  tgaccactctctggtgtagccaag-aaaaatttccaggactccatcttgtataagaaattctatacatac
                 Guinea pig  tgacgactctctggtgtagccaag-aaaaatttccaggactccatcttgtataaggaattccatacatat
                 Chinchilla  tgaccactctctggtgtagccaag-aaaaatttccaggactccatcttgtataagaaattgtatacatac
           Brush-tailed rat  tgaccactctctggtgtagccaag-aaaaatttccagggctccatcttgtataagaaattctatacgtac
                     Rabbit  tgaccattctctggtgtagtgaag-aaaattttccaggactccatcttgtataagaaattctatcttcat
                       Pika  tgaccattctctggtgtagtgaag-aaaattttccaggactccatcttgtataagaaattctatgcttat
                        Pig  tgaccgtcctctggggtagcgaag-cgaattttccaggagtccatcttgtataagacatcctgtacctac
                     Alpaca  tgaccatcctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgtacctat
             Bactrian camel  tgaccatcctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgtacctac
                    Dolphin  tgaccatcttctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgtacctat
               Killer whale  tgaccatcttctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgtacctat
           Tibetan antelope  tgaccatcctctgctgtagtgaag-aaaattttccaggagtccatcttgtataagaaattgtgtacctat
                        Cow  tgaccatcctctgctgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgtacctac
                      Sheep  tgaccatcctctgctgtagtgaag-aaaattttccaggagtccatcttgtataaaaaattgtgtacctac
              Domestic goat  tgaccatcctctgctgtagtgaag-aaaattttccaggagtccatcttgtataagaaattgtgtacctac
                      Horse  tgaccattctccggtgtagtgaag-gaaattttccaggagtccatcttgtataagaaattctgtacctac
           White rhinoceros  tgaccattctctggtgtagcgaag-gaaattttctaggagtccatcttgtataagaaattctctacctac
                        Cat  tgaccgttctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctacacctac
                        Dog  tgaccattctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgtacctgt
                    Ferret   tgactattctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgt------
                      Panda  tgactattctctggtgtagtgaag-gaaattttccaggagtccatcttgtgtaagaaattctgtacctgc
             Pacific walrus  tgactattctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgtacctgc
               Weddell seal  tgactattctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgtacctgc
           Black flying-fox  tgaccattctctggtgtagtgagg-aaaaatttccaggagtccatcttgcataagaaattctgtacccac
                    Megabat  tgaccattctctggtgtagtgagg-aaaaatttccaggagtccatcttgcataagaaattctgtacccac
              Big brown bat  tgaccattctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattctgtaccaat
       David's myotis (bat)  tgaccattctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattccgtaccaac
                   Microbat  tgaccattctctggtgtagtgaag-aaaattttccaggagtccatcttgtataagaaattccgtaccaac
                   Hedgehog  tgatcattctctggtgtag-gaag-aaaaattttcaggagtccatcttgtataagaccttctaca--tac
                      Shrew  tgacc-tgttttggcgtggtgaagtaaaattttccaggagtccatcttgtatgagaaattttatatgtac
            Star-nosed mole  tgactgttctctggtgtagtgaag-aaaattttccaggagtccatcttgtggaagacattccgcacctac
                   Elephant  tgaccattctctggtgta--gaag-acaaattttcaggtctccatcttgtataggaaattctatacctat
        Cape elephant shrew  -----------tggagt---gaaa-agaaaatgtcgtgtctccatcttgtttacaaagtgctatactcac
                    Manatee  tgaccgttctctggtgtagtgaag-aaacattttcaggtctccatcttgtataagaaattctatacctat
           Cape golden mole  tgaccattctttggtgttctgaag-aaaatgtttaaggtctccatcttgtataagaaattctctagctac
                     Tenrec  tgaccatccttggggacggtggag-aaatatgctaaggtctccatcttgtaccagaaatgctctacctac
                   Aardvark  tgaccgttctctgatggagtgaag-aaaaattttcaggtctccatcttgtataagaaattgtatacctac
                  Armadillo  tgatcattctctggtttagtgaag-aaaattttccaggtctccatcttgtataaggaactctatatcta-
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  tgaca----tgcaaataa---tgcta-taatctttctgt----ag------tacataatga---g-ct-c
                      Chimp  tgaca----tgcaaataa---tgcta-taatctttctgt----ag------tacataatga---g-ct-c
                    Gorilla  tgaca----tgcaaataa---tgcta-taatctttctgt----ag------tacataatga---g-ct-c
                  Orangutan  tgaca----tgcaaataa---tgcta-taatctttctgt----ag------tacataatga---g-ct-c
                     Gibbon  tgaca----tgcaaataa---tgcta-gaatctttctgt----ag------tacataatga---g-ct-c
                     Rhesus  tgaca----tgcaaataa---tgcta-taatctttctgt----ag------tacataatga---g-ct-c
        Crab-eating macaque  tgaca----tgcaaataa---tgcta-taatctttctgt----ag------tacataatga---g-ct-c
                     Baboon  tgaca----tgcaaataa---tgcta-taatctttctgt----ag------tacataatga---g-ct-c
               Green monkey  tgaca----tgcaaataa---tgcta-taatcttcctgt----ag------tacataatga---g-ct-c
                   Marmoset  tagca----tgcaaataa---tgcta-tgatctttctgt----ag------tacataatga---g-tt-c
            Squirrel monkey  tagaa----tgcaaataa---tgcta-taatctttctgt----ag------tacataatga---g-tt-c
                   Bushbaby  taacg----tgaaaataatctttctc-gaatctttctgc----ag------tgcgtaatgc---g-tt-t
         Chinese tree shrew  tacca----tagaaatac---cgctg-tcagctttatgt----gc------tacgcgaaga---g-tg-t
                   Squirrel  taaca----cacaaatga---tgctg-tcatcttgctgt----gg------cgcatagtga---g-tt-c
     Lesser Egyptian jerboa  taaca----tgcaaatga---tgctg-taatcatgctgt----gc------tcaataatga---g-tc-c
               Prairie vole  taaca----tgcaaataa---tgctg-gaatcatgctgt----gg------tagatcatga---g-tt-a
            Chinese hamster  taaca----tgcaaataa---tgctg-gaatcgtgctgt----gg------tggagaatga---a-tt-c
             Golden hamster  taaca----tgcaaataa---tgctg-ggatcacgctgt----ga------tggataatga---a-tt-a
                      Mouse  taaca----tgcaaataa---tgctg-gaatcatgctgt----gg------tgaataaaga---g-tt-a
                        Rat  aaaca----tgcaaagaa---tgctg-tagtcatgctgt----gg------tggatga--a---g-tt-a
             Naked mole-rat  taaca----tgcaaataa---tgctg-taatctcgctgt----gg------tactgaa-ga---a-tt-c
                 Guinea pig  caaca----tgc-aataa---tgctg-tcatcttgctgt----ga------tccataatta---g--t-c
                 Chinchilla  caaca----tgcaaataa---tgcta-taatcttgctgc----gg------aacgtaatga---g-tt-c
           Brush-tailed rat  caaca----tgtaaacaa---tgctg-agatcttgttgt----gg------aacagattgt---a-tt-c
                     Rabbit  taaca----taaaaataa---tgctg-tagtcaatcttt----ag-------acttaatga---g-ct-c
                       Pika  taaca----tagaaataa---tgctg-tggtgattctgt----ag-----gtgcctgatga---g-tc-c
                        Pig  tgaca----tacaaataa---tactg-taatctttgtgt----ag------cacatgccga---g-tt-t
                     Alpaca  taaca----tacaaacaa---tactg-tca-ccttacat----ag------tacatattga---g-tt-t
             Bactrian camel  taaca----tacaaacaa---tactg-tca-ccttacat----ag------tacatattga---g-tt-t
                    Dolphin  taaca----tacaaataa---tactg-taatctttacgt----ag------tacatactga---g-tt-t
               Killer whale  taaca----tacaaataa---tactg-taatctttacgt----ag------tacatactga---g-tt-t
           Tibetan antelope  taaca----tataaatac---tacta-taatctttacat----aa------cacatcttga---g-tt-t
                        Cow  taacg----tacaaatat---gacta-taatctttacat----aa------cacatcttga---g-tt-t
                      Sheep  taaca----tataaatac---tacta-taatctttacat----aa------cacatcttga---g-tt-t
              Domestic goat  taaca----tataaatac---tacta-taatctttacat----aa------cacatcttga---g-tt-t
                      Horse  taaca----tgcgaataa---tactg-caatctttatgt----ag------gacatactga---g-tt-t
           White rhinoceros  taaca----tgcaaataa---tacca-taatctttatgt----ag------tacataggga---g-tt-t
                        Cat  taacc----tgaaaataa---tactg-taatcttcttgt----aa------ctcacactga---g-tt-t
                        Dog  tcaaa----tgcacataa---tactg-tgatcttcatgt----ag------tacatac--------tt-t
                    Ferret   -------------aatga---tgctg-taatcttcatgt----ag------tctgcactgc---g-tg-t
                      Panda  taaca----tgcaaataa---tactg-taatcttcatgt----ag------taagtactga---g-tt-t
             Pacific walrus  taaca----tgcaaataa---tactg-taatcttcatgt----ag------tacgtactga---g-tt-t
               Weddell seal  taata----tgcaaataa---tactg-taattttcatgt----aa------tacgtactga---g-tt-t
           Black flying-fox  taata----tgcaaataa---tattg-taatctttctat----ag------gacacactga---gttt-t
                    Megabat  taata----tgcaaataa---tattc-taatctttctat----ag------gacacactga---gttt-t
              Big brown bat  taaca----tgcaaataa---tacca-taatttgtatgt----ag------tacatactaa---g-tt-t
       David's myotis (bat)  taaca----tgca---aa---tacca-taatttgtatgt----ag------tacatagtaa---g-tt-t
                   Microbat  taaca----tgcaaataa---tacca-taatttgtatgt----ag------tacatagtaa---g-tt-t
                   Hedgehog  taaga----tgcaaataa---cacta-tcatgtttatgt----gg------tacatagtaa---g-tt-g
                      Shrew  gaacg----tgcaaatag---gaccg-caattttgatat----aa------ttcatactga---g-tt-t
            Star-nosed mole  taaca----cgcagctca---caccg-tgatctttacgc----agccccccccccccccgactcg-tt-t
                   Elephant  aaaca----ggcaaataa---tgcta-taacctttagatatatag------tatatactga---g-ct-c
        Cape elephant shrew  aaata----ggcaaatga---tgtcactggtctggctgtatgcag------cacagactcg---g-ctcc
                    Manatee  aaaca----ggcaaataa---tgcca-taatttttatgtatgtag------tacatactga---g-ct-c
           Cape golden mole  aaaca----gccaaatga---ggtca-cagtctgcatgc----ag------ttcacaatga---g-ct-c
                     Tenrec  aaccaaatgggcaaaggc---tttcc-taatctggctgtttggag------tacat-acga---g-ct-c
                   Aardvark  agaca----gacgaa-ga---tgttg-tggtctttatgt----tg------tacacactga---g-ct-c
                  Armadillo  ---------cccaaataa---tgcca-tagactttatgt----aa------tatataagga---g-tt-c
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  gttttgcgtgatcctc----------cactggtgtat------a-ttgg--tatt---------------
                      Chimp  gttttgcgtgatcctc----------cactggtgtat------a-ttgg--tatt---------------
                    Gorilla  gttttgcgtgatcctc----------cactggtgtat------a-ttgg--tatt---------------
                  Orangutan  gttttgcgtgatcctc----------cactggtgtat------a-ttgg--tatt---------------
                     Gibbon  attttgcgtgatcctc----------cactggtgtat------g-ttgg--tatt---------------
                     Rhesus  gttttgcgtgatcctc----------cgctggcctat------a-ctgg--tatt---------------
        Crab-eating macaque  gttttgcgtgatcctc----------cgctggcctat------a-ctgg--tatt---------------
                     Baboon  gttttgcgtgatcctc----------cgctggcctat------a-ctgg--tatt---------------
               Green monkey  gttttgcgtgatcctc----------tgctggcctat------a-ctgg--tatt---------------
                   Marmoset  attttgcgggatcctc----------tactggtatat------a-ttgg--tatt---------------
            Squirrel monkey  attttgcgtgatcctc----------tactggtatat------a-ttgg--tatt---------------
                   Bushbaby  gctttcc--agtcctc----------cgttggtctgc------g-ttgg--catttaatctttg-ctt--
         Chinese tree shrew  gatttgtgagatcctc----------catccgtcttc------a-gtgg--tctttcgtctttg-ttt--
                   Squirrel  atgttgtgtaatcttc----------cattggttgac------a-ttgg--tgcttaatctttg-c----
     Lesser Egyptian jerboa  actgcatgtgatcttccccggtaccacattgg-------------------ggtttactctttg-c----
               Prairie vole  attttgtgtaatgttc----------cattgct----------a-tt----tatttaattctta-ctt--
            Chinese hamster  gtcttgtgtcatcttc----------cattgc-------------------tatttaatctttg-cct--
             Golden hamster  atctagtataatcgtc----------catcgct----------a-tt----tatttaatctttg-ctt--
                      Mouse  atcgtgtgtaatcttc----------cattgc-------------------tatttaatctttg-ctt--
                        Rat  atcatgtgtaatctgg----------cattgc-------------------tatttaatttttg-ctt--
             Naked mole-rat  atcttgcatcatctac----------cgttgggctat------a-ttgg--tatttaatctttg-ctttt
                 Guinea pig  atcttgcataagcttc----------caatggtctac------a-ttgg--tatttaatctttg-ctt--
                 Chinchilla  ttcttgcataatcttc----------cattggtctac------g-ttgg--tttttaatc-ttg-ctt--
           Brush-tailed rat  atattgcacaatcttc----------cattggtctaactttaga-ttgg--tatttaatctttg-ctt--
                     Rabbit  attttgcatgatcttc----------cattagtttac------a-gtgg--taggt----tttg-ttt--
                       Pika  atttttcatgatcttc----------cattagtatac------a-ttgt--tag--------tt-ttt--
                        Pig  gttttgcttgatcctc----------tgttgaggtac------actgggcaccgttactcttcg-ctt--
                     Alpaca  gcttggctcgatgctc----------cattgatacac------a-tcggcacatttactctttg-ctc--
             Bactrian camel  gcttggcttgatgctc----------cgttgatacac------a-tcggcacatttactctttg-ctc--
                    Dolphin  gtttggtttgatcctc----------cgttgatatac------a-ttggcacatgtactc------tt--
               Killer whale  gtttggtttgatcctc----------cgttgatatac------a-ttggcacatgtactct-----tt--
           Tibetan antelope  atctggtttgctccac----------cgttgataaac------a-tgggcagatttactctttg-ctt--
                        Cow  atctggtttgctccat----------tgttgataaac------a-tggacagatatactctttg-ctt--
                      Sheep  atctggtttgctccac----------cgttgataaac------a-tgggcagatttactctttg-ctt--
              Domestic goat  atctggtttgctccaa----------cgttgataaac------a-tgggcagatttactctttg-ctt--
                      Horse  gttttgcttgctcctc----------tgttggtagac------g-tgggtacatttagtctttg-ctt--
           White rhinoceros  gttttgcttgatcctc----------tgttggtatac------g-tggacacatttagtctttg-ctt--
                        Cat  gttttcctggatctcc----------ccctggc--cc------g-taggtacatttaggctttg--tt--
                        Dog  gttttgctggatcctc----------cattgcc--at------a-taggtacatttaggctttggttt--
                    Ferret   gtcttgctggctcctc----------cactgtt--aa------a-tcagtgcagtcaggctttg--tt--
                      Panda  g----gctggatcctc----------cattggt--ac------a-taggtacatttaggc--tg--at--
             Pacific walrus  gctttgctgggtcctc----------cattgat--ac------c-taggtacatttaggc--tg--tt--
               Weddell seal  gctttgctgggtcctc----------cattggt--ac------a-taggtacatttaggc--tg--tt--
           Black flying-fox  gttttgcttgatcctc----------tgtcagtatac------a-ttggtacatttagtctttg-c-t--
                    Megabat  gttttgcttgatcctc----------tgtcagtatac------a-ttggtacatttagtctttg-c-t--
              Big brown bat  gttttgcttgatgctc----------tgtcagtgtac------a-ttagtacatttagtctttg-ctt--
       David's myotis (bat)  gttttgcctgatgctc----------tgtcagtgtac------a-ttagtacatttagtctttg-ctt--
                   Microbat  gttttgcttgatgctc----------tgtcagtgtac------a-ttagtacatttagtctttg-cct--
                   Hedgehog  gttttgcttgctcttt----------ctttggtattc------a-gtggtccatctaaaccttg-ctt--
                      Shrew  atgttgtttgatgctc----------cattggcatgc------g-tcggtccacctagtcaggg-ctt--
            Star-nosed mole  ctcttccttg----------------cgttgctgtcc------t-tcggtgcattcagtctttg-ctt--
                   Elephant  gtttgacttgatccta----------ttttgatttat------a-ttgatacgtttagtcttca-ctt--
        Cape elephant shrew  gtttttcctgctcctc----------gtttgatatgt------c-ttg--------------tg-ctt--
                    Manatee  ttttgatttgatccta----------ttttggtatat------a-ttggtacgtttagtcttta-ctt--
           Cape golden mole  gct-ttctcaatcttg----------tttgggtagtt------a-tgggtacactgagtctttg-cct--
                     Tenrec  actgggcttgatccta----------cttcggtatct------a-cgggcatcttccatcttc--tct--
                   Aardvark  atgtgacttgatccta----------ctt-ggtaggt------a-ttgggacatttcgtct---------
                  Armadillo  gttttgcttgatccac----------ccttggtatac------g-ttggtgcatttattct--g-ttt--
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ------tt----gtct--------ttgcttctacgc-ct--tc--------------ctc-tctgtgctt
                      Chimp  ------tt----gtct--------ttgcttctacgc-ct--tc--------------ctc-tctgtgctt
                    Gorilla  ------tt----gtct--------ttgcttctacgc-ct--tc--------------ctc-tctgtgctt
                  Orangutan  ------tt----gtct--------ttgcttctacac-ct--tc--------------ctc-tctgtgctt
                     Gibbon  ------tt----gtct--------ttgcttctacac-tt--tc--------------ctc-tctgtgctt
                     Rhesus  ------tt----gtct--------ttgcttctacac-cc--tc--------------ctc-tctgtgctt
        Crab-eating macaque  ------tt----gtct--------ttgcttctacac-cc--tc--------------ctc-tctgtgctt
                     Baboon  ------tt----gtct--------ttgcttctaca--cc--tc--------------ctc-tctgtgctt
               Green monkey  ------tt----gtct--------ttgcttctacac-cc--tc--------------ctc-tctgtgctt
                   Marmoset  ------tt----gtct--------ttgcatctacac-ct--tc--------------ctc-tctgtgctt
            Squirrel monkey  ------tt----gtct--------ttgcgtctacac-ct--tc--------------ctc-tctgtgctt
                   Bushbaby  --tttatt----gtct--------ttgttcctagac-tt--tc--------------ttc-tctgcgctc
         Chinese tree shrew  --tta-tt----gtct--------ttgttcctagac-tt--tc--------------gtc-tctgtgctt
                   Squirrel  --tatatt----gtct--------ttgttcctagac-tt--tt--------------ttc-tctgcactt
     Lesser Egyptian jerboa  ---ttgtt----gtct--------ttgttcctagac-tt--tc--------------tgc-tctgcttgc
               Prairie vole  --tttatt----gtct--------ttgttcctagac-tt--tc--------------ttt-tccgcaatc
            Chinese hamster  --tttatt----gtct--------ttgttcctacac-tt--tc--------------ttc-tctgcactc
             Golden hamster  --tttatt----gtct--------ttgttcctagac-tg--ac--------------ttc-tctgcactc
                      Mouse  --tttatt----gtct--------ttgttcctagac-tt--aa--------------ttc-tctgcattc
                        Rat  --tttatt----gtct--------ttgttcttagacttt--ct--------------ttc-tctgcattc
             Naked mole-rat  tatttatt----gtct--------ttgttcctagac-tt--tc--------------atc-tctgtactc
                 Guinea pig  --tttatt----gtct--------ttgttcctagac-tt--tc--------------ttc-tctgtattc
                 Chinchilla  --tttatt----gtct--------ttgttcctagac-ct--tc--------------ttt-tctgtgctc
           Brush-tailed rat  --tttatt----gtct--------ttgttcctagac-tt--tt--------------tttctctttgctc
                     Rabbit  --actgtt----gtct--------ttgttcctagac-tt--tc--------------att-tctgta-tg
                       Pika  --attatt----gtct--------ttgttgctagac-tt--tc--------------atc-tgtgta-tc
                        Pig  --tttatt----gtct--------ctattgctagac-ttgctt--------------ttt-tctctcctc
                     Alpaca  --tttatt----gttt--------ttatgcctcgac-tt--tc--------------ttt-tctgtactc
             Bactrian camel  --tttatt----gttt--------ttatgcctcgac-tt--tc--------------ttt-tctgtactc
                    Dolphin  --tttatt----gtct--------cttttcctagac-tt--tc--------------ttt-tctgtactc
               Killer whale  --tttatt----gtct--------cttttcctagac-tt--tc--------------ttt-tctgtactc
           Tibetan antelope  --tttatt----gtct--------ctaatcccagac-tt--tc--------------ttt-tccatactc
                        Cow  --tctaat----gtct--------ctaatcccagac-tt--tc--------------ttt-tccatactc
                      Sheep  --tttatt----gtct--------ctaatcccagac-tt--tc--------------ttt-tccatactc
              Domestic goat  --tttatt----gtct--------ctaatcccagac-tt--tc--------------ttt-tccatactc
                      Horse  --tttatt----gtct--------ttattcctagac-tt--gc--------------tct-tctgtgctc
           White rhinoceros  --tttatc----gtct--------ttattcctagac-tt--tc--------------ttt-tctgtgctc
                        Cat  --ttgctt----gtct--------ttatccctagac-tt--tc--------------ttt-tctgtgctc
                        Dog  --tttatt----gtct--------ttctgcctagac-tt--tc--------------ttt-tctgtgctc
                    Ferret   --tttact----gtct--------ttattcctagac-tt--tc--------------ttc-tctgtgctc
                      Panda  --tttatt----gcct--------ttattcctagac-tt--tc--------------tta-tctgtgctc
             Pacific walrus  --tttatt----ctct--------ttattcctagac-t-------------------tta-tttgtgctc
               Weddell seal  --tttatt----ctct--------ttattcctagac-t-------------------tta-tct-tgctc
           Black flying-fox  --ttgatt----gtct--------ttattccaagac-ac--tc--------------ttt-tcggagctc
                    Megabat  --ttgatt----gtct--------ttattccaagac-tt--tc--------------ttt-tcggagctc
              Big brown bat  --tttatt----gtct--------tcattttaagac-tt--tc---------------tc-tctgtgctt
       David's myotis (bat)  --tttatt----gtct--------tcattctaagac-tt--tc---------------tt-tctgtgctt
                   Microbat  --tttatt----gtct--------tcattctaagac-tt--tc---------------tt-tctgtgctt
                   Hedgehog  --ttactt----gaca--------agatttctggac-tt--tctt------------tcc-tgtgttccc
                      Shrew  --cttatttctagtctagtgcttcttatctcttgcc-ac--tctttctagacgtt--tcc-tctgtgctc
            Star-nosed mole  --ttggct----gtct--------ttattcctaacc---------------cgctgctcc-cctttgctc
                   Elephant  --ttcatt----gtc---------ttgttcctagaa-tt--tc--------------ttc-tctgtgctc
        Cape elephant shrew  --ttc-tt----tcg---------ttgtccctacac-tt--tc--------------ttc-tc--tgctc
                    Manatee  --ttcatg----gtct--------ttgttcctagac-tt--tc--------------ttc-tctgtgctc
           Cape golden mole  --ttcatt----ct----------ttgttcccagac-tt--tc--------------ttc-tctgtgctc
                     Tenrec  --gtcact----tt----------ttgttcctggac-gt--tc--------------ttc-tctgtgttc
                   Aardvark  ------------------------gtgttcctaggc-tt--tc--------------ttc-t--gtgctc
                  Armadillo  --ttcata----atcc--------tttttcatagaa-tt--tc--------------ttg-tctgtgcta
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ccagtgctttta-ta
                      Chimp  ccagtgctttta-ta
                    Gorilla  ccagtgctttta-ta
                  Orangutan  ccagtgctttta-ta
                     Gibbon  cccgtgctttta-ta
                     Rhesus  ccggtgctttta-ta
        Crab-eating macaque  ccggtgctttta-ta
                     Baboon  ccggtgctttta-ta
               Green monkey  ccggtgctttta-ca
                   Marmoset  catgtgctttta-ta
            Squirrel monkey  catgtgttttta-ta
                   Bushbaby  ccagtgctttca-ca
         Chinese tree shrew  ccagtgctttta-ta
                   Squirrel  ccagagatttta-ta
     Lesser Egyptian jerboa  ttggtgctta---ta
               Prairie vole  tcagagctttcc-ta
            Chinese hamster  tcagagctttcc-tg
             Golden hamster  tcagagctttcc-ta
                      Mouse  tcagagcttttaata
                        Rat  tcagagcttttcata
             Naked mole-rat  ccagtgctttta-ta
                 Guinea pig  ccagtgaattta-ta
                 Chinchilla  ccagtgattt---ta
           Brush-tailed rat  tcagtgatttta-ta
                     Rabbit  ccagtgctttta-ta
                       Pika  ccagtgatttta-ag
                        Pig  tcaccacttttg-ca
                     Alpaca  tcaccactttca-ta
             Bactrian camel  tcaccactttca-ta
                    Dolphin  tcaccactttta-ta
               Killer whale  tcaccactttta-ta
           Tibetan antelope  tcatccctttta-ta
                        Cow  tcatccctttta-ta
                      Sheep  tcatccctttta-ca
              Domestic goat  tcatccctttta-ta
                      Horse  ccactgctttta-ta
           White rhinoceros  ccaccgctttta-ta
                        Cat  ccactgctttta-ta
                        Dog  ccactgctttta-ga
                    Ferret   ccactgctttta-ta
                      Panda  ctactgctttta-ta
             Pacific walrus  ccactgcttttc-ta
               Weddell seal  ccactgcttttc-ta
           Black flying-fox  ccaccgctttta-ta
                    Megabat  ccaccgctttta-ta
              Big brown bat  ccaccactttta-ta
       David's myotis (bat)  ccaccgctttta-ta
                   Microbat  ccaccgctttta-ta
                   Hedgehog  ctg------------
                      Shrew  ctg------------
            Star-nosed mole  cta------------
                   Elephant  ccactgctttta-ta
        Cape elephant shrew  tcactgagttca-ca
                    Manatee  ccactgctttta-ca
           Cape golden mole  ccactgc-ttca-tg
                     Tenrec  ctaccacgtgga-ca
                   Aardvark  ccaccactttta-ta
                  Armadillo  ccaccgctttta-ta
            Tasmanian devil  ===============
                    Opossum  ===============
                   Platypus  ===============
         American alligator  ===============

Inserts between block 9 and 10 in window
B D                    Pig 1bp
B D                 Alpaca 1bp
            Bactrian camel 1bp
B D                Dolphin 220bp
              Killer whale 1bp
          Tibetan antelope 1bp
B D                    Cow 1bp
B D                  Sheep 1bp
             Domestic goat 1bp
B D                  Horse 1bp
B D       White rhinoceros 1bp
B D                    Cat 1bp
B D                    Dog 1bp
B D                Ferret  1bp
B D                  Panda 1bp
            Pacific walrus 1bp
              Weddell seal 1bp
          Black flying-fox 1bp
B D                Megabat 1bp
             Big brown bat 1bp
      David's myotis (bat) 1bp
B D               Microbat 1bp
B D               Hedgehog 10bp
B D                  Shrew 11bp
           Star-nosed mole 3bp
B D               Elephant 1bp
       Cape elephant shrew 1bp
B D                Manatee 1bp
          Cape golden mole 1bp
B D                 Tenrec 1bp
                  Aardvark 1bp
B D              Armadillo 1bp

Alignment block 10 of 118 in window, 140711159 - 140711160, 2 bps 
B D                   Human  ca
B D                   Chimp  ca
B D                 Gorilla  ca
B D               Orangutan  ca
B D                  Gibbon  ca
B D                  Rhesus  ta
B D     Crab-eating macaque  ta
B D                  Baboon  ta
B D            Green monkey  ta
B D                Marmoset  ca
B D         Squirrel monkey  ca
B D                Bushbaby  ca
         Chinese tree shrew  tg
B D                Squirrel  tg
     Lesser Egyptian jerboa  tg
               Prairie vole  tg
B D         Chinese hamster  tg
             Golden hamster  tg
B D                   Mouse  tg
B D                     Rat  tg
B D          Naked mole-rat  ta
B D              Guinea pig  tg
                 Chinchilla  tg
           Brush-tailed rat  tg
B D                  Rabbit  cg
B D                    Pika  t-
B D                     Pig  ta
B D                  Alpaca  ca
             Bactrian camel  ca
B D                 Dolphin  ca
               Killer whale  ca
           Tibetan antelope  cc
B D                     Cow  cc
B D                   Sheep  cc
              Domestic goat  cc
B D                   Horse  ca
B D        White rhinoceros  ca
B D                     Cat  ca
B D                     Dog  ca
B D                 Ferret   cc
B D                   Panda  ca
             Pacific walrus  ca
               Weddell seal  ca
           Black flying-fox  ta
B D                 Megabat  ta
              Big brown bat  ca
       David's myotis (bat)  ca
B D                Microbat  ca
B D                Hedgehog  ta
B D                   Shrew  ca
            Star-nosed mole  ca
B D                Elephant  ca
        Cape elephant shrew  ca
B D                 Manatee  ca
           Cape golden mole  ta
B D                  Tenrec  cg
                   Aardvark  ca
B D               Armadillo  ca
B D         Tasmanian devil  ==
B D                 Opossum  ==
B D                Platypus  ==
B D      American alligator  ==

Inserts between block 10 and 11 in window
B D               Marmoset 309bp

Alignment block 11 of 118 in window, 140711161 - 140711731, 571 bps 
B D                   Human  cttac-taaaat----a-----ttaaaa----atgat-gt-tttccccttt-a-ttat-aaaaat-atc-
B D                   Chimp  cttac-taaaat----a-----ttaaaa----atgat-gt-tttccccttt-a-ttat-aaaaat-atc-
B D                 Gorilla  cttac-taaaat----a-----ttaaaa----atgat-gt-cttccccttt-a-ttat-aaaaat-atc-
B D               Orangutan  cttac-taaaat----a-----ttaaaa----atgat-gt-tttccccttt-a-ttat-aaaaat-atc-
B D                  Gibbon  cttac-taaaat----a-----ttaaaa----atgat-gt-tttccccttt-a-ttat-aaaaat-atc-
B D                  Rhesus  cttac-taaaat----a-----ttaaaa----atgat-gt-tttccccttt-a-ttat-aaaaat-atc-
B D     Crab-eating macaque  cttac-taaaat----a-----ttaaaa----atgat-gt-tttccccttt-a-ttat-aaaaat-atc-
B D                  Baboon  cttac-taaaat----a-----ttaaaa----atgat-gt-tttccccttt-a-ttat-aaaaat-atc-
B D            Green monkey  ctcac-taaaat----a-----ttaaaa----atgat-gt-tttccccttt-a-ttat-aaaaat-atc-
B D                Marmoset  cttac-taaaat----gt----ttaaaa----atgaa-gc-tttccccttt-a-ttat-aaaaat-atc-
B D         Squirrel monkey  cttac-taaaac----gt----ttaaaa----atgat-tc-tttcctcttt-a-ttat-aaaaat-atc-
B D                Bushbaby  cttac-taaagt----attttattaaaa----ataatggt-tttctcctcc-a-taat-acaaat-atc-
         Chinese tree shrew  tttag-taaact----atctttttaaaa----atgct-gt-tttccctttt-a-tcac-aacaat-atc-
B D                Squirrel  cttgt-taaaat----------------------gct-gt-tttgcctttt-a-ttat-aaaaat---a-
     Lesser Egyptian jerboa  cttag-taaagg----agctcatg-aaa----aag--------cttgcttt-a-ttat-aaagct-aca-
               Prairie vole  tttat-taaagt----atctcatt-ata----gtgtt-gg-ctcttccttt-a-ttat-aaaaag-aca-
B D         Chinese hamster  tttat-t-aaat----atttcatt-atc----atgtt-gg-ttctcctttt-a-ttac-aaaaat-aca-
             Golden hamster  tttat-taaaat----atttcatt-ata----gtttt-gg-ttctcctttt-a-ttac-aaaaat---a-
B D                   Mouse  tttat-taaaat----atcttttt-aaa----atgtt-ag-ttctcccttt-a-ttac-aaaaac-aca-
B D                     Rat  tttat-taaaat----atctcatt-aaa----atgtt-ag-ttctcccttt-a-tgat-caaaac-aca-
B D          Naked mole-rat  actgt-tgaaat----atcttatcaaaa----a---t-gt-ttccctcttt-a-tgat-aaaaat-aaa-
B D              Guinea pig  attat-tgaaat----atcttaccaaaa----atgtt-gc-tttccccttt-a-ttat-aaaatt-aca-
                 Chinchilla  attat-tgaaat----ctcttaccaaaa----aagtt-ct-tttcctcttt-a-ttat-caaaat-ata-
           Brush-tailed rat  attat-tgaaat----atcttacc-aaa----aagtt-gt-tttccctttt-a-ttat-aaaaat-atat
B D                  Rabbit  cgtgt-taaaat----atgtt----aag----attat-gt-tttccctatt-a-ttat-aaaatc-atc-
B D                    Pika  ---------agc----ttatt----aaa----atgac-gt-tctacctgat-a-ttat-gaaat--atc-
B D                     Pig  tttat-tccaat----atcttgttaaaa----atgcc-gtcttcccccttt-a-ttat-aaaaac-atca
B D                  Alpaca  cttac-taaaat----atcatgttaaaa-----tgtc-atctttcccattt-a-taag-aaacat-atca
             Bactrian camel  cttac-taaaat----atcatgttaaaa-----tgtc-atctttcccattt-a-ttag-aaacat-atca
B D                 Dolphin  cttat-taaaat----atcttgttaaaa-----tgcc-atctttccccttt-a-ttat-aaaaat--tca
               Killer whale  cttat-taaaat----atcttgttaaaa-----tgcc-atctttccccttt-a-ttat-aaaaat--tca
           Tibetan antelope  cttat-taaaatca--atcttattaaaatatcttgcc-gtctttccccttt-a-ttat-aaaaat--tca
B D                     Cow  attat-taaaatcaatatcttattaaaatatcttgcc-atctttccccttt-a-ttat-aaaaat--tca
B D                   Sheep  cttat-taaaatca--atcttattaaaatatcttgcc-gtctttccccttt-a-ttat-aaaaat--tca
              Domestic goat  cttat-taaaatca--atcgtattaaaatatcttgcc-gtctttccccttt-a-ttat-aaaaat--tca
B D                   Horse  cttac-taaaac----atcttgttaaaa----atgct-ctttttctccttt-a-ttat-aaaaat-attg
B D        White rhinoceros  cttac-caaaac----atcttgttaaaa----atgct-gtctttctccttt-a-ttat-aaaaat-atca
B D                     Cat  gtcat-gaaaat----a------------------ct-gtctttccccttt-a-tgat-aaaaat-tttg
B D                     Dog  cttat-taaaat----agcttattaaaa----atccc-acctttccccttt-c-ttgt-aaaaaa-gtca
B D                 Ferret   cttgt-taaagt----agcttcttaaaa----atggt-atcttaccccttt-a-tcataaaaaaa-ccca
B D                   Panda  cttat-taaaat----agcttcttaaaa----atgcc-atctttccccttt-a-tcat-aaaaaa-atca
             Pacific walrus  cttat-taaagt----agcttcttaaaa----aggct-atctttccccttt-a-tcat-aaaaaa-atca
               Weddell seal  cttat-taaagt----agcttcttaaaa----aggct-atctttccccttt-a-tcataaaaaaa-atca
           Black flying-fox  tttat-taaaat----atcttgttaaaa----atgcc-atcttttcccttt-aattat-aaaaat-atca
B D                 Megabat  tttat-taaaat----atcttgttaaaa----atgcc-atcttttcccttt-aattat-aaaaat-atca
              Big brown bat  cttat-taaagt----atcttgttaaaa----atggt-atctttcaccttt-attcat-aaaaat-atca
       David's myotis (bat)  cttat-taaaat----atcttgttaaaa----atg-----ctttctccttt-agtcat-aaaaat-ctca
B D                Microbat  cttat-taaagt----atcttgttaaaa----atgct-atctttcaccttt-agtcat-aaaaat-ctca
B D                Hedgehog  catct-ccaagt----attttgttgaaa----acact-atcttttcccctt-a-taac-aaaaat-atca
B D                   Shrew  cttgt-taaaaa----ttgttgttaaaa----tagat-atctgtccccttt-a-gagt-aaaa---atca
            Star-nosed mole  cttcc-tagaac----gttttgttacaa----t-gct-gtcttttccctttca-ctgt-aaaggc-atta
B D                Elephant  ctttt-taaaat----atcttgttagaa----atttt-ctttcc--ccttt-t-taat-aaaaat-atca
        Cape elephant shrew  cttct-tgaaat----atcttattagac----attct-gctttcttccctt-t-gcgt-gaaaat-ac--
B D                 Manatee  cttaa-taaaat----atc--gttagaa----attct-ctctttccccttt-t-taat-aaaaat-atca
           Cape golden mole  tttaactaaact----atcttgttagaa----attgt-tttttcccccctt-t-agat-taaaaacatca
B D                  Tenrec  ctcaa-taaacg----atctcattagaa----actct-gttctccccattt-t-aaat-caaaag-atca
                   Aardvark  atcat-taaagt----atctcattagaa----attct-gtttctcctcttt-t-ttat-aaaaat-aaca
B D               Armadillo  cgtat-tcaaag----atcttgcttaaa----atgct-gttaac--ctttt-a-ttat-aaaaat-atga
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D                Platypus  ======================================================================
B D      American alligator  ======================================================================

                      Human  -atagt----------cattgtagtaaat-tt-----------t-g-a-at-aatgta-aagatgattat
                      Chimp  -atagt----------cattgtagtaaat-tt-----------t-g-a-at-aattta-aagatgactat
                    Gorilla  -atagt----------catcgtagtaaat-tt-----------t-g-a-at-aattta-aagatgactat
                  Orangutan  -atagt----------cattgtcgtaaat-tt-----------t-g-a-at-aattta-aagatgactat
                     Gibbon  ---agt----------cattgtagtaaat-tt-----------t-g-a-at-aattta-aagatgagtat
                     Rhesus  -atagt----------cattgtagtaaat-tt-----------t-g-a-at-aattta-aagatgactat
        Crab-eating macaque  -atagt----------cattgtagtaaat-tt-----------t-g-a-at-aattta-aagatgactat
                     Baboon  -atagt----------cattgtagtaaat-tt-----------t-g-a-at-aattta-aagatgactat
               Green monkey  -atagt----------cattgtagtaaat-tt-----------t-g-a-at-aattta-aagatgactat
                   Marmoset  -atagt----------ta-tgtagaaaat-tt-----------t-g-a-at-aattta-aagatgactat
            Squirrel monkey  -atagt----------tattgtagaaaat-tt-----------t-g-a-at-aattta-aagatgactat
                   Bushbaby  -ac---------------ctttagaaaat-gg-----------a-g-a-aa-aacata-aagatggctat
         Chinese tree shrew  -ttatt----------cattgtagaaaat-tt-----------g-g-a-ga-aatccg-aagatgaccat
                   Squirrel  -----t----------ttttgtagaaaat-tt-----------g-g-a-aa-aatata-aag---actat
     Lesser Egyptian jerboa  -----aatgtaatggctatcata-aaaat-tt-----------g-g-a-at-gatcta-aagattactat
               Prairie vole  -----g----------tattgtacagaac-tt-----------g-g-a-aa-aattaa-aagatgactat
            Chinese hamster  -----g----------tattgtacagaat-tt-----------g-g-a-at-aattca-aaagtgaatat
             Golden hamster  -----g----------tgttatgcagaat-tt-----------g-g-a-aa-aattta-aaggtgactgt
                      Mouse  -----g----------tattgtacagaat-tt-----------g-g-g-aa-aattta-aaggtgactat
                        Rat  -----g----------tattgtacagaat-tt-----------g-g-g-aa-aattta-aaggtgattgc
             Naked mole-rat  -----c----------tactgcagaaaat-tg-----------g-g-a-ca-ggtgta-cagatgactat
                 Guinea pig  -ctatt----------tacagtagaatat-tt-----------a-g-a-aa-ggtata-cagataactat
                 Chinchilla  -ctgtt----------tgctgtggaatat-tt-----------g-g-a-aa-ggcgtc-cagatgagtat
           Brush-tailed rat  gttatc----------tactgtagaatat-tt-----------g-g-a-aa-ggtgta-cagatgatgct
                     Rabbit  -atgct----------aattgtagaaaat-tt-----------gtg-a-aa-aatctc----atga-tat
                       Pika  -atgtt----------agttatagaaaat-tt-----------gag-a-aa-aatagtaaagatga-tat
                        Pig  gatatt----------tattgtagaaaat-tg-----------g-g-a-aa-aatcta-aagatgactgt
                     Alpaca  catact----------tactgtag-aaat-tg-----------g-g-g-aa-aatcta-aagatgagtag
             Bactrian camel  catatt----------tattgtag-aaat-tg-----------g-g-g-aa-aatcta-aagatgagtag
                    Dolphin  cacatt----------tattgtagtaaat-tg-----------g-g-g-aa-aatcta-aagatgactat
               Killer whale  cacatt----------tattgtagtaaat-tg-----------g-g-g-aa-aatcta-aagatgactat
           Tibetan antelope  catatt----------tgttgtagaaaat-tg-----------g-g-g-aa-aaccta-aagatgcctat
                        Cow  catatt----------tgttgtagaaaat-tg-----------g-g-g-aa-aaccta-aagatgcctat
                      Sheep  catatt----------ggtcgtagaaaat-tg-----------g-g-g-aa-aaccta-aagatgcctat
              Domestic goat  catatt----------ggtcgtagaaaat-tg-----------g-g-g-aa-aaccta-aagatgcctat
                      Horse  cgtatt----------cattgtagaaaat-tt-----------g-g-a-aa-aatcta-aagatgactat
           White rhinoceros  catatt----------cattgtagaaaat-tt-----------g-g-a-aa-aatcta-aagatgactat
                        Cat  catatt----------aattgtttaacat-tt-----------g-c-a----------------------
                        Dog  catatt----------cattgtttaaaat-ac-----------g-g-a----------------------
                    Ferret   cacatt----------aattgtttaaaat-tt-----------g-g-a----------------------
                      Panda  catact----------aattgtttaaaat-tc-----------g-g-a----------------------
             Pacific walrus  tacatt----------aattgtttaaaat-tt-----------g-g-a----------------------
               Weddell seal  cacatt----------aattgtttaaaat-tt-----------g-g-a----------------------
           Black flying-fox  tatatt----------cattgtagaaaac-tt-----------g-g-a-aa-aatcta-aagatgactat
                    Megabat  tatatt----------cattgtagaaaac-tt-----------g-g-a-aa-aatcta-aagatgactat
              Big brown bat  tatagt----------cattgcagaaaat-ta-----------g-g-a-aa-aatcta-aa-atgactat
       David's myotis (bat)  tatagt----------cattgcagaatat-tt-----------g-g-a-aa-aatcaa-aa-atgactat
                   Microbat  tatagt----------cattgcagaaaat-tt-----------g-gaa-aa-aatcaa-aa-atgactat
                   Hedgehog  catatt----------cattgcaggacatatt-----------g-a-agaa-aatctt-agtatgactct
                      Shrew  aatgtt----------cattgtagaaaac-tt-----------g-a-a-aa-gatcta-aagataactgt
            Star-nosed mole  catttt----------ccctgtagaaaat-tt-----------g-g-a-aa-atttga-aaggtaactag
                   Elephant  catatt----------cattgtagaaaat-tt----------ga-a-a-aa-aatcta-aagatgactat
        Cape elephant shrew  catact----------ctttgcagaaaat-tg----------gg-g-g-ag-agtcta-aagggcactag
                    Manatee  catatt----------cattgtagaaaat-tt----------gg-a-a-aa-aaact-------------
           Cape golden mole  catatt----------cattgtagaaaat-tt-----------g-g-a-aa-aatcta-acgatggctat
                     Tenrec  c--act----------ccctgtatggaat-ttgaggtggggggg-g-g-ga-gaagta-aaaatggctgt
                   Aardvark  catatt----------catcgtagagaat-tt----------gg-a-a-aacaatctg-aaga---ctgt
                  Armadillo  catatt----------tactgtagaaaat-tt-----------g-g-a-aa-attcta-aagatgatcat
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  aaaaattacccataatccc----g-taa------------------------------------------
                      Chimp  aaaaattacccataattcc----g-taa------------------------------------------
                    Gorilla  aaaaattacccataatccc----g-taa------------------------------------------
                  Orangutan  aaaaattacccataatccc----a-taa------------------------------------------
                     Gibbon  aaaaattatgcataatccc----a-taa------------------------------------------
                     Rhesus  aaaaattacccataatccc----a-taa------------------------------------------
        Crab-eating macaque  aaaaattacccataatccc----a-taa------------------------------------------
                     Baboon  aaaaattacccataatccc----a-taa------------------------------------------
               Green monkey  aaaaattacccataatccc----a-taa------------------------------------------
                   Marmoset  aaaaattacccacaatccc----a-taa------------------------------------------
            Squirrel monkey  aaaaattacccacaatccc----attaa------------------------------------------
                   Bushbaby  gaaacttacccataatccc----a-caa------------------------------------------
         Chinese tree shrew  aaaaattacccacaatcct----a-taa------------------------------------------
                   Squirrel  aagaagtaccccaaatcct----a-tag------------------------------------------
     Lesser Egyptian jerboa  aaagaaaatccacaatgcc----a-taa------------------------------------------
               Prairie vole  aaagattatgcacaatgcc----a-taa------------------------------------------
            Chinese hamster  aactattatgcacaatgcc----a-taa------------------------------------------
             Golden hamster  aagtattatgtacaatgcc----a-taa------------------------------------------
                      Mouse  aaagcttatgtacaatgccttata-taa------------------------------------------
                        Rat  aaagattatgttcaacgcc----a-tta------------------------------------------
             Naked mole-rat  aaaaattatccctaatccc----a-taa------------------------------------------
                 Guinea pig  aaaaatcacacataatccc----a-taa------------------------------------------
                 Chinchilla  aaaaattgccccaaatccc----a-aac------------------------------------------
           Brush-tailed rat  aaaaactacccataatccc----a-tta------------------------------------------
                     Rabbit  agaaattacccataaccct----a-gaa------------------------------------------
                       Pika  gggaattactcataacccc----t-gag------------------------------------------
                        Pig  gaaaattacccatactcct----a-taa------------------------------------------
                     Alpaca  aaaaattacccataatccc----a-taa------------------------------------------
             Bactrian camel  aaaaattacccataatccc----a-taa------------------------------------------
                    Dolphin  aaaaattacccataatcct----a-taa------------------------------------------
               Killer whale  aaaaattacccataatcct----a-taa------------------------------------------
           Tibetan antelope  acaaattacccataatcct----a-taa------------------------------------------
                        Cow  acaaattacttataatcct----a-taa------------------------------------------
                      Sheep  acaaattacccataatcct----a-taa------------------------------------------
              Domestic goat  acaaattatccataatcct----a-taa------------------------------------------
                      Horse  aaaaattacccatagttct----a-taa------------------------------------------
           White rhinoceros  -aaaattacccatagttcc----a-taa------------------------------------------
                        Cat  -aaaattaccc-----------------------------------------------------------
                        Dog  -aggattactc-----------------------------------------------------------
                    Ferret   -aaaatgac-------------------------------------------------------------
                      Panda  -aaaactactc-----------------------------------------------------------
             Pacific walrus  -aaaattac-------------------------------------------------------------
               Weddell seal  -aaaattactt-----------------------------------------------------------
           Black flying-fox  aaaaattacccataatccc----a-taa------------------------------------------
                    Megabat  aaaaattacccataatccc----a-taa------------------------------------------
              Big brown bat  aaaaattacccataatact----a-taa------------------------------------------
       David's myotis (bat)  aaaaattacccataattct----a-taa------------------------------------------
                   Microbat  aaaaattacccataattct----a-taa------------------------------------------
                   Hedgehog  -aacatcacccacaattcc----a-gaa------------------------------------------
                      Shrew  -aaaa------aatgttcc----a-taa------------------------------------------
            Star-nosed mole  -aaaattggccacggtggc----a-tga------------------------------------------
                   Elephant  aaaacttatccatagtgcc----a-tag----gggataattgagccctggtggggtagtagttaagagct
        Cape elephant shrew  aacaatcaccca----------------------------------------------------------
                    Manatee  -------atctataatccc----a-tagtttagggataatggagcc------------------------
           Cape golden mole  aaagattacccatggtgcc----a-tgg------------------------------------------
                     Tenrec  aaatattacccaccat-ct----a-taa------------------------------------------
                   Aardvark  aa---ttacccataatccc----a-tag------------------------------------------
                  Armadillo  aa-aattacccataatccc----a-taa------------------------------------------
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ---------------------------c-t----------------------------------------
                      Chimp  ---------------------------c-t----------------------------------------
                    Gorilla  ---------------------------c-t----------------------------------------
                  Orangutan  ---------------------------c-t----------------------------------------
                     Gibbon  ---------------------------c-t----------------------------------------
                     Rhesus  ---------------------------ctt----------------------------------------
        Crab-eating macaque  ---------------------------ctt----------------------------------------
                     Baboon  ---------------------------ctt----------------------------------------
               Green monkey  ---------------------------ctt----------------------------------------
                   Marmoset  ---------------------------c-t----------------------------------------
            Squirrel monkey  ---------------------------c-t----------------------------------------
                   Bushbaby  ---------------------------c------------------------------------------
         Chinese tree shrew  ---------------------------c-c----------------------------------------
                   Squirrel  ---------------------------c-c----------------------------------------
     Lesser Egyptian jerboa  ---------------------------c-c----------------------------------------
               Prairie vole  ---------------------------c-c----------------------------------------
            Chinese hamster  ---------------------------c-c----------------------------------------
             Golden hamster  ---------------------------c-c----------------------------------------
                      Mouse  ---------------------------c-c----------------------------------------
                        Rat  ---------------------------c-c----------------------------------------
             Naked mole-rat  ---------------------------c-c----------------------------------------
                 Guinea pig  ---------------------------c-c----------------------------------------
                 Chinchilla  ---------------------------g-c----------------------------------------
           Brush-tailed rat  ---------------------------c-c----------------------------------------
                     Rabbit  ---------------------------c-t----------------------------------------
                       Pika  ---------------------------g-t----------------------------------------
                        Pig  ---------------------------c-c----------------------------------------
                     Alpaca  ---------------------------c-c----------------------------------------
             Bactrian camel  ---------------------------c-c----------------------------------------
                    Dolphin  ---------------------------c-c----------------------------------------
               Killer whale  ---------------------------c-c----------------------------------------
           Tibetan antelope  ---------------------------c-c----------------------------------------
                        Cow  ---------------------------c-c----------------------------------------
                      Sheep  ---------------------------c-c----------------------------------------
              Domestic goat  ---------------------------c-c----------------------------------------
                      Horse  ---------------------------c-c----------------------------------------
           White rhinoceros  ---------------------------c-c----------------------------------------
                        Cat  ----------------------------------------------------------------------
                        Dog  ----------------------------------------------------------------------
                    Ferret   ----------------------------------------------------------------------
                      Panda  ----------------------------------------------------------------------
             Pacific walrus  ----------------------------------------------------------------------
               Weddell seal  ----------------------------------------------------------------------
           Black flying-fox  ---------------------------c-c----------------------------------------
                    Megabat  ---------------------------c-c----------------------------------------
              Big brown bat  ---------------------------t-g----------------------------------------
       David's myotis (bat)  ---------------------------t-g----------------------------------------
                   Microbat  ---------------------------t-g----------------------------------------
                   Hedgehog  ---------------------------c-a----------------------------------------
                      Shrew  ---------------------------t-c----------------------------------------
            Star-nosed mole  ---------------------------c-c----------------------------------------
                   Elephant  tggttggtaaccaaaagatgggcagttc-aaatccatcagccgcttcttggaaaccctgtggggcagttc
        Cape elephant shrew  ---------------------------c-aaatcttacagac----------------------------
                    Manatee  ---------------------------c-tggtggcgtagta----------------------------
           Cape golden mole  ---------------------------c-t----------------------------------------
                     Tenrec  ---------------------------c-c----------------------------------------
                   Aardvark  ---------------------------c-c----------------------------------------
                  Armadillo  ---------------------------c-c----------------------------------------
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ----------------------------------------------------------------------
                      Chimp  ----------------------------------------------------------------------
                    Gorilla  ----------------------------------------------------------------------
                  Orangutan  ----------------------------------------------------------------------
                     Gibbon  ----------------------------------------------------------------------
                     Rhesus  ----------------------------------------------------------------------
        Crab-eating macaque  ----------------------------------------------------------------------
                     Baboon  ----------------------------------------------------------------------
               Green monkey  ----------------------------------------------------------------------
                   Marmoset  ----------------------------------------------------------------------
            Squirrel monkey  ----------------------------------------------------------------------
                   Bushbaby  ----------------------------------------------------------------------
         Chinese tree shrew  ----------------------------------------------------------------------
                   Squirrel  ----------------------------------------------------------------------
     Lesser Egyptian jerboa  ----------------------------------------------------------------------
               Prairie vole  ----------------------------------------------------------------------
            Chinese hamster  ----------------------------------------------------------------------
             Golden hamster  ----------------------------------------------------------------------
                      Mouse  ----------------------------------------------------------------------
                        Rat  ----------------------------------------------------------------------
             Naked mole-rat  ----------------------------------------------------------------------
                 Guinea pig  ----------------------------------------------------------------------
                 Chinchilla  ----------------------------------------------------------------------
           Brush-tailed rat  ----------------------------------------------------------------------
                     Rabbit  ----------------------------------------------------------------------
                       Pika  ----------------------------------------------------------------------
                        Pig  ----------------------------------------------------------------------
                     Alpaca  ----------------------------------------------------------------------
             Bactrian camel  ----------------------------------------------------------------------
                    Dolphin  ----------------------------------------------------------------------
               Killer whale  ----------------------------------------------------------------------
           Tibetan antelope  ----------------------------------------------------------------------
                        Cow  ----------------------------------------------------------------------
                      Sheep  ----------------------------------------------------------------------
              Domestic goat  ----------------------------------------------------------------------
                      Horse  ----------------------------------------------------------------------
           White rhinoceros  ----------------------------------------------------------------------
                        Cat  ----------------------------------------------------------------------
                        Dog  ----------------------------------------------------------------------
                    Ferret   ----------------------------------------------------------------------
                      Panda  ----------------------------------------------------------------------
             Pacific walrus  ----------------------------------------------------------------------
               Weddell seal  ----------------------------------------------------------------------
           Black flying-fox  ----------------------------------------------------------------------
                    Megabat  ----------------------------------------------------------------------
              Big brown bat  ----------------------------------------------------------------------
       David's myotis (bat)  ----------------------------------------------------------------------
                   Microbat  ----------------------------------------------------------------------
                   Hedgehog  ----------------------------------------------------------------------
                      Shrew  ----------------------------------------------------------------------
            Star-nosed mole  ----------------------------------------------------------------------
                   Elephant  taccctttctggtagggtcgctatgagttgggactgactcgacggtat----------------------
        Cape elephant shrew  ----------------------------------------------------------------------
                    Manatee  -------------------------------------------gttaagagcttggctgctaaccaaaag
           Cape golden mole  ----------------------------------------------------------------------
                     Tenrec  ----------------------------------------------------------------------
                   Aardvark  ----------------------------------------------------------------------
                  Armadillo  ----------------------------------------------------------------------
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ----------------------------------------------------------------------
                      Chimp  ----------------------------------------------------------------------
                    Gorilla  ----------------------------------------------------------------------
                  Orangutan  ----------------------------------------------------------------------
                     Gibbon  ----------------------------------------------------------------------
                     Rhesus  ----------------------------------------------------------------------
        Crab-eating macaque  ----------------------------------------------------------------------
                     Baboon  ----------------------------------------------------------------------
               Green monkey  ----------------------------------------------------------------------
                   Marmoset  ----------------------------------------------------------------------
            Squirrel monkey  ----------------------------------------------------------------------
                   Bushbaby  ----------------------------------------------------------------------
         Chinese tree shrew  ----------------------------------------------------------------------
                   Squirrel  ----------------------------------------------------------------------
     Lesser Egyptian jerboa  ----------------------------------------------------------------------
               Prairie vole  ----------------------------------------------------------------------
            Chinese hamster  ----------------------------------------------------------------------
             Golden hamster  ----------------------------------------------------------------------
                      Mouse  ----------------------------------------------------------------------
                        Rat  ----------------------------------------------------------------------
             Naked mole-rat  ----------------------------------------------------------------------
                 Guinea pig  ----------------------------------------------------------------------
                 Chinchilla  ----------------------------------------------------------------------
           Brush-tailed rat  ----------------------------------------------------------------------
                     Rabbit  ----------------------------------------------------------------------
                       Pika  ----------------------------------------------------------------------
                        Pig  ----------------------------------------------------------------------
                     Alpaca  ----------------------------------------------------------------------
             Bactrian camel  ----------------------------------------------------------------------
                    Dolphin  ----------------------------------------------------------------------
               Killer whale  ----------------------------------------------------------------------
           Tibetan antelope  ----------------------------------------------------------------------
                        Cow  ----------------------------------------------------------------------
                      Sheep  ----------------------------------------------------------------------
              Domestic goat  ----------------------------------------------------------------------
                      Horse  ----------------------------------------------------------------------
           White rhinoceros  ----------------------------------------------------------------------
                        Cat  ----------------------------------------------------------------------
                        Dog  ----------------------------------------------------------------------
                    Ferret   ----------------------------------------------------------------------
                      Panda  ----------------------------------------------------------------------
             Pacific walrus  ----------------------------------------------------------------------
               Weddell seal  ----------------------------------------------------------------------
           Black flying-fox  ----------------------------------------------------------------------
                    Megabat  ----------------------------------------------------------------------
              Big brown bat  ----------------------------------------------------------------------
       David's myotis (bat)  ----------------------------------------------------------------------
                   Microbat  ----------------------------------------------------------------------
                   Hedgehog  ----------------------------------------------------------------------
                      Shrew  ----------------------------------------------------------------------
            Star-nosed mole  ----------------------------------------------------------------------
                   Elephant  ----------------------------------------------------------------------
        Cape elephant shrew  ----------------------------------------------------------------------
                    Manatee  gtcagcagttcaaatccaccagccgctccttggaaactctatggggcagttctactctgtcctgtggggt
           Cape golden mole  ----------------------------------------------------------------------
                     Tenrec  ----------------------------------------------------------------------
                   Aardvark  ----------------------------------------------------------------------
                  Armadillo  ----------------------------------------------------------------------
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ----------------------------------------------tag-agata-------attactat
                      Chimp  ----------------------------------------------tag-agata-------attactat
                    Gorilla  ----------------------------------------------tag-agata-------attactat
                  Orangutan  ----------------------------------------------tag-agata-------attactat
                     Gibbon  ----------------------------------------------taa-agata-------attactat
                     Rhesus  ----------------------------------------------tag-agata-------attactgt
        Crab-eating macaque  ----------------------------------------------tag-agata-------attactgt
                     Baboon  ----------------------------------------------tag-agata-------attactgt
               Green monkey  ----------------------------------------------tag-agata-------attactgt
                   Marmoset  ----------------------------------------------tag-agata-------attactac
            Squirrel monkey  ----------------------------------------------tag-agata-------attgctac
                   Bushbaby  -----------------------------------------------ac-agata-------atttctat
         Chinese tree shrew  ----------------------------------------------cag-agaaa-------attactgc
                   Squirrel  ----------------------------------------------caa-aggta-------atttctat
     Lesser Egyptian jerboa  ---------------------------------------------------------------------c
               Prairie vole  ---------------------------------------------------------------------t
            Chinese hamster  ---------------------------------------------------------------------g
             Golden hamster  ---------------------------------------------------------------------g
                      Mouse  ---------------------------------------------------------------------t
                        Rat  ---------------------------------------------------------------------t
             Naked mole-rat  ----------------------------------------------cag-agata-------atcactgt
                 Guinea pig  ----------------------------------------------caa-agata-------atcacttt
                 Chinchilla  ----------------------------------------------cag-agata-------atcactat
           Brush-tailed rat  ----------------------------------------------tag-agata-------atcactat
                     Rabbit  ----------------------------------------------gag-ata-----------------
                       Pika  ----------------------------------------------cag-aga-----------------
                        Pig  ----------------------------------------------cag-agata-------attactat
                     Alpaca  ----------------------------------------------cag--gata-------att-ctat
             Bactrian camel  ----------------------------------------------cag--gata-------att-ctat
                    Dolphin  ----------------------------------------------cag-agata-------attactat
               Killer whale  ----------------------------------------------cag-agata-------attactat
           Tibetan antelope  ----------------------------------------------aag-agcta-------attgctgt
                        Cow  ----------------------------------------------aag-agcta-------attgctgt
                      Sheep  ----------------------------------------------aag-agcta-------attgctgt
              Domestic goat  ----------------------------------------------aag-agcta-------attgctgt
                      Horse  ----------------------------------------------tag-ggata-------attactag
           White rhinoceros  ----------------------------------------------tag-aggta-------attactat
                        Cat  ----------------------------------------------------------------------
                        Dog  ----------------------------------------------------------------------
                    Ferret   ----------------------------------------------------------------------
                      Panda  ----------------------------------------------------------------------
             Pacific walrus  ----------------------------------------------------------------------
               Weddell seal  ----------------------------------------------------------------------
           Black flying-fox  ----------------------------------------------tag-agata-------atcattat
                    Megabat  ----------------------------------------------tag-agata-------atcattat
              Big brown bat  ----------------------------------------------tag-agata-------attactat
       David's myotis (bat)  ----------------------------------------------tag-agata-------attactat
                   Microbat  ----------------------------------------------tag-aggta-------attactat
                   Hedgehog  ----------------------------------------------cag-agatt-------attactgt
                      Shrew  ----------------------------------------------tagtaatttagagtgaattactaa
            Star-nosed mole  ----------------------------------------------tggaagact-------gttactat
                   Elephant  ------------------------------ctaacaacaacaacgacag-ggata--------ttact--
        Cape elephant shrew  ----------------------------------------------tag-agata-------gttact--
                    Manatee  tgctaggagtcgggacagactcaacggcacctaacaacaacaacaacag-ggata-------attact--
           Cape golden mole  ----------------------------------------------tag-caata-------at---t--
                     Tenrec  ----------------------------------------------tag-ggaaa-------a-------
                   Aardvark  ----------------------------------------------tag-ggaca-------atcact--
                  Armadillo  ----------------------------------------------tag-atata-------attactat
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  taatcttattactgtcagtctcttttctctgaa-tatatgcaaataaatgcatagaaatatata-t-tt-
                      Chimp  taatcttattactgtcagtctcttttctctgaa-tatatgcaaataaatgcatagaaatata------t-
                    Gorilla  taatcttattactgtcagtctcttttctctgaa-tatatgcaaataaatgcatagaaatatata-t-tt-
                  Orangutan  taatcttattactgtcagtctcttttctctgaa-tatatgcaaataaatgcatagaaatatata-t-tt-
                     Gibbon  taatcttattactgtcagtctcttttctctgaa-tatatgcaaataaatgcatagaaatatata-t-tt-
                     Rhesus  taatcttattactgtcagtctcttttctctgaa-tatatgcaaataaatgcatagaaatatata-t-tt-
        Crab-eating macaque  taatcttattactgtcagtctcttttctctgaa-tatatgcaaataaatgcatagaaatatata-t-tt-
                     Baboon  taatcttattactgtcagtctcttttctctgaa-tatatgcaaataaatgcatagaaatatata-t-tt-
               Green monkey  taatcttattactgtcagtctcttttctctgaa-tatatgcaaataaatgcatagaaatatata-t-tt-
                   Marmoset  tgatctaattactgccaatctctttactctgaa-tatatgcaaataaatgcatagaaatatata-t-at-
            Squirrel monkey  taatctaattactgccaatctctttactctgaa-tatatgcaaataaatgcatagaaatagata-t-at-
                   Bushbaby  taacataattactgtcaggctcttccctctgca-tatatgtaaataaatgcata-agatatat--t-tt-
         Chinese tree shrew  tgaca----tactgtcagcctcttctctctgaattttatagaaataaatgcatataaatataca-tgtt-
                   Squirrel  taacctaattactgtcag----ttttctct-----------aaatatatacatagaaatgtata-t-tt-
     Lesser Egyptian jerboa  agacataaatactgccggtctctattctctgaa-tctatacacagttatgtataaaaat--ata-t-tt-
               Prairie vole  tagcat-attgctgtcagtcacttttctctgta-tatatacaaatatatgcacagaaatgcata-t-tt-
            Chinese hamster  tagctt-attgctgtcagtctcttttctctgca-tatatgcaaatatatgcata-aaatgtata-t-tt-
             Golden hamster  tagcat-attgctgtcagtcatttttctttgca-tatatgcaaatatatgcata-aaatatata-t-tt-
                      Mouse  tagcctaattgctatcagtcccttttctctgta-tatacacaaagatatgcagagaaatgtata-t-tt-
                        Rat  tagcataattgctgtcagtctcttgtctctgca-taggtacaaagatatgcagagaaatgtata-t-tt-
             Naked mole-rat  aaacataattactatcagtctttttcctctgaa-tatatgcaaatatatgcatagagagatata-t-tt-
                 Guinea pig  aaacacaattactatcaatctcttttctctgaa-catatgcaaatatatgcatagggatatata-t-tt-
                 Chinchilla  aaacataattactatccgtctcttttctctcaa-catatgcaaatatatgcatagggatatata-t-tt-
           Brush-tailed rat  gaacataattactatcaatctcttttctctgaa-catatgcaaatatatgcatagggatatata-t-tt-
                     Rabbit  -------attactgtaagtc---tttccttgag-catatgcaaataaatgaataaagat-tatatt-tt-
                       Pika  ---------tactgtccatc---tttatttgaa-tatatgcaaatgaatgggtagaaat-tgtg-t-tt-
                        Pig  taatataatgactgtcagccccccttctctcaa-tggatgcacatcgaggcac-aaaatagaga-t-tta
                     Alpaca  taatatagttactgccagtccctcttttctgaa-gacatgcaaatctatgcattaaaatatata-t-tca
             Bactrian camel  taatatagttactgccaatccctcttttctgaa-gacatgcaaatctatgcattaaaatatata-t-tca
                    Dolphin  taatataat------tagtcccccttctctgaa-tacatgcaaa-ctatgcataaaaatatata-t-tta
               Killer whale  taatataat------tagtcccccttctctgaa-tacatgcaaa-ctatgcataaaaatatata-t-tta
           Tibetan antelope  taatatagt------cagtccctcttctctgaa--acatgcaaatctatgcat-aaaatatg--------
                        Cow  taatatagt------cagtccctcttctctgaa--acatgcaaatctatgcat-aaaatatgta-t-tta
                      Sheep  taatatagt------cagtccctcttctctgaa--acatgcaaatctatgcat-aaaatatgta-t-tta
              Domestic goat  taatatagt------cagtccctcttctctgaa--acatgcaaatctatgcat-aaaatatgta-t-tta
                      Horse  taacataattactatcagtctctcttctctgaa-tacatgcaaataaatgcat-aaaatgtata-t-ttg
           White rhinoceros  taacataatgactgtcagtctgtcttctctgaa-tacatgcaaataaatgcataaaaatatcta-t-tta
                        Cat  --------------tcagttcctctttcctgaa-tatgtacaaatgaatgtgtagaaatgtata-t-ttg
                        Dog  --------------tcggtccctcgcccctgaa-aacatacagataaatgcatataagtagatc-c-tta
                    Ferret   --------------tctgtccctctttcctgaa-tacatgcaaagaaatgc-cagagatatata-c-tta
                      Panda  --------------tcagtccctctttccttaa-tacctacaaataaatgcatagaaatatata-t-tta
             Pacific walrus  ------------------tctctctttcctgaa-tacatacaaataaatgcatagaaatatata-t-tta
               Weddell seal  --------------tcagtccctctttcctgaa-tacatacaaataaatgcatagaaatataca-t-tta
           Black flying-fox  taccccaattactgtcagtctctcttctctgaa-tacatgcagataaatgcatagaagtacata-t-tta
                    Megabat  taccccaattactgtcagtctctcttctctgaa-tacatgcagataaatgcatagaagtacata-t-tta
              Big brown bat  taacataattactgttagtctctcttctgtgaa-tgcatgcaaataaatgcatagtaa-atata-t-tta
       David's myotis (bat)  taaca----tactgtcagtctctcttcagtgaa-tgcatgcaaataaatgtatagtaa-atgtg-t-tta
                   Microbat  taacatacttactgtcagtcgctcttcagtgaa-tgcatgcaaataaatgcatagtaa-atatg-t-tta
                   Hedgehog  tggtataattgctccatgtccctcttctctgag-catgtacaaatagatacttagaaatatatc-t-tca
                      Shrew  tgacgtaattactttgagtccctcttctctgga-tatatacaaagaaatacatagaaatttata-t-ata
            Star-nosed mole  taacatcattgccggcagctcctcttc-ccgag-gacatgcgaacaattgcatagaaatagata-c-tta
                   Elephant  -------attactttcagtcccttttctctgaa-tatatgcaagtaaatgcatagaaatatgta-c-tta
        Cape elephant shrew  -------attacttgcagttcccttgctctg----atgtgcaggtaagtgcac-----------------
                    Manatee  -------attactttcagtcccttttatctgaa-tgtatgcaagtaaatgcatagaaatatata-c-tta
           Cape golden mole  -------gttactttcagtcccttttctctgaa-tatatccgaatcagtgcatagagaaatga-----ta
                     Tenrec  --------ttactcacagcgctttttctctgaa-ggtatgcaggtaagtgtatagaaatttaaa-c-ttg
                   Aardvark  -------attactttctatcccttttccttgaa-tatatccaagtaaatgtacaaaaatctata-c-tta
                  Armadillo  tagcataattattttcagtcctttttccatgaa-catatgcaaataagtgcatagacatattt----tta
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  t-atac--a-------------aaatgaagat--------------------------------------
                      Chimp  t-atac--a-------------aaatgaagat--------------------------------------
                    Gorilla  t-atac--a-------------aaatgaagat--------------------------------------
                  Orangutan  t-atac--a-------------aaatgaagat--------------------------------------
                     Gibbon  t-atac--a-------------aaatgaagat--------------------------------------
                     Rhesus  t-ata---a-------------aaatgaagat--------------------------------------
        Crab-eating macaque  t-ata---a-------------aaatgaagat--------------------------------------
                     Baboon  t-ata---a-------------aaatgaagat--------------------------------------
               Green monkey  t-ata---a-------------aaatgaagat--------------------------------------
                   Marmoset  t-atac--a-------------aaatgaagat--------------------------------------
            Squirrel monkey  c-atac--a-------------aaatgaaaat--------------------------------------
                   Bushbaby  t-atat--a-------------aaatgaagat--------------------------------------
         Chinese tree shrew  t-gtac--a-------------aaattatgat--------------------------------------
                   Squirrel  t-atat--a-------------agatgaagac--------------------------------------
     Lesser Egyptian jerboa  t-ata---g-------------aaatgaagat--------------------------------------
               Prairie vole  a-atac--a-------------aaataatgat--------------------------------------
            Chinese hamster  c-atac--a-------------aaataaagat--------------------------------------
             Golden hamster  a-atac--a-------------aaataaagat--------------------------------------
                      Mouse  a-atac--a-------------aaataaagat--------------------------------------
                        Rat  c-atac--a-------------atctaaagat--------------------------------------
             Naked mole-rat  t-atac--a-------------aaaggaagat--------------------------------------
                 Guinea pig  t-atac--a-------------aatgaag-at--------------------------------------
                 Chinchilla  t-gtac--g-------------aaaggagcat--------------------------------------
           Brush-tailed rat  t-atag--a-------------aaaggaccat--------------------------------------
                     Rabbit  t-atgg--a-------------aaatgaagat--------------------------------------
                       Pika  t-atgc--a-------------aaatgaacat--------------------------------------
                        Pig  taatac--a-------------aaatcaagtt--------------------------------------
                     Alpaca  t-gtac--a-------------aaatgaagat--------------------------------------
             Bactrian camel  t-gtac--a-------------aaatgaagat--------------------------------------
                    Dolphin  t-atac--a-------------aaatgaagat--------------------------------------
               Killer whale  t-atac--a-------------aaatgaagat--------------------------------------
           Tibetan antelope  ---tat--a-------------aaatgaagat--------------------------------------
                        Cow  t-atat--a-------------aaatgaagat--------------------------------------
                      Sheep  t-atat--a-------------aaatgaagat--------------------------------------
              Domestic goat  t-atat--a-------------aaatgaagat--------------------------------------
                      Horse  g-ttac--a-------------aaatgaagat--------------------------------------
           White rhinoceros  t-atac--a-------------aaatgaagat--------------------------------------
                        Cat  t-atag--g-------------aaatgaaaat--------------------------------------
                        Dog  t-atataga-------------aaatgaaaat--------------------------------------
                    Ferret   t-atac--a-------------aaatgaaaattttatatatatatatatataaataaaactacatatatg
                      Panda  t-atac--a-------------gaatgaaaat--------------------------------------
             Pacific walrus  t-atac--a-------------aaatgaaaat--------------------------------------
               Weddell seal  t-atac--a-------------aaatgaaaat--------------------------------------
           Black flying-fox  t-atac--a-------------aaatgtaggt--------------------------------------
                    Megabat  t-atac--a-------------aaatgtaggt--------------------------------------
              Big brown bat  t-atac--a-------------aaatgaaaat--------------------------------------
       David's myotis (bat)  t-atat--a-------------aaatgaaaac--------------------------------------
                   Microbat  t-atat--a-------------aaatgaaaat--------------------------------------
                   Hedgehog  g-atac--a-------------aagtgaaaat--------------------------------------
                      Shrew  t-gtat--acgtatgcatatgtatatgaactt--------------------------------------
            Star-nosed mole  c-atac--a-------------aaatgaagct--------------------------------------
                   Elephant  t-ac----a-------------aaatgaggat--------------------------------------
        Cape elephant shrew  -----------------------aatgaggat--------------------------------------
                    Manatee  t-atag--a-------------aaatgaggat--------------------------------------
           Cape golden mole  c-atac--a-------------aaataaggat--------------------------------------
                     Tenrec  t-gtat--a-------------aaatgaggat--------------------------------------
                   Aardvark  t-atac--a-------------gagtgaggtt--------------------------------------
                  Armadillo  t-atag--a-------------aaatgtgggt--------------------------------------
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ---------------------------cacatgtacatac------------------------------
                      Chimp  ---------------------------cacatgtacatac------------------------------
                    Gorilla  ---------------------------cacatgtacatac------------------------------
                  Orangutan  ---------------------------cacatgtacatac------------------------------
                     Gibbon  ---------------------------cacatgtacatac------------------------------
                     Rhesus  ---------------------------cacatgtacatac------------------------------
        Crab-eating macaque  ---------------------------cacatgtacatac------------------------------
                     Baboon  ---------------------------cacatgtacatac------------------------------
               Green monkey  ---------------------------cacatgtacatac------------------------------
                   Marmoset  ---------------------------cacatgtacatat------------------------------
            Squirrel monkey  ---------------------------cacatgtacatac------------------------------
                   Bushbaby  ---------------------------cctatgtatatac------------------------------
         Chinese tree shrew  ---------------------------catatgtacatac------------------------------
                   Squirrel  ---------------------------tgtgtgtacatgc------------------------------
     Lesser Egyptian jerboa  ---------------------------catatg----tac------------------------------
               Prairie vole  ---------------------------cagatg----tga------------------------------
            Chinese hamster  ---------------------------cagatg----tga------------------------------
             Golden hamster  ---------------------------cagata----tga------------------------------
                      Mouse  ---------------------------tagatg-------------------------------------
                        Rat  ---------------------------cacatg-------------------------------------
             Naked mole-rat  ---------------------------catatgtacatac------------------------------
                 Guinea pig  ---------------------------catatgtatatac------------------------------
                 Chinchilla  ---------------------------catatgtacatac------------------------------
           Brush-tailed rat  ---------------------------catatgtacatac------------------------------
                     Rabbit  ---------------------------catatgtatatgt------------------------------
                       Pika  ---------------------------catatgtgcatat------------------------------
                        Pig  ---------------------------tatatatatatatatgtatgtgtatatatatatatatatgtgt
                     Alpaca  ---------------------------catatgtacatat------------------------------
             Bactrian camel  ---------------------------catatgtacatat------------------------------
                    Dolphin  ---------------------------catatgtacatat------------------------------
               Killer whale  ---------------------------catatgtacatat------------------------------
           Tibetan antelope  ---------------------------cctacacacatat------------------------------
                        Cow  ---------------------------cctacgcacatat------------------------------
                      Sheep  ---------------------------cctacacacatat------------------------------
              Domestic goat  ---------------------------cctacacacatat------------------------------
                      Horse  ---------------------------cacatgtacatgt------------------------------
           White rhinoceros  ---------------------------tatatgtacatat------------------------------
                        Cat  ---------------------------catatgtgcatac------------------------------
                        Dog  ---------------------------catatgtacatac------------------------------
                    Ferret   acgtgtgtgtgtatatatatatatatatatatatatatat------------------------------
                      Panda  ---------------------------tatatgtacatat------------------------------
             Pacific walrus  ---------------------------tgtatgtacatgt------------------------------
               Weddell seal  ---------------------------tatatgtacatgt------------------------------
           Black flying-fox  ---------------------------catatgtacatat------------------------------
                    Megabat  ---------------------------catatgtacatat------------------------------
              Big brown bat  ---------------------------cataggtacatat------------------------------
       David's myotis (bat)  ---------------------------cataggtacatat------------------------------
                   Microbat  ---------------------------tataggtacatat------------------------------
                   Hedgehog  ---------------------------aacacatacatat------------------------------
                      Shrew  ---------------------------caagtaaatatca------------------------------
            Star-nosed mole  ---------------------------c----aaacggcc------------------------------
                   Elephant  ---------------------------catatgtacatac------------------------------
        Cape elephant shrew  ---------------------------tatatttacatac------------------------------
                    Manatee  ---------------------------catatgtacatat------------------------------
           Cape golden mole  ---------------------------catttgtgcctac------------------------------
                     Tenrec  ---------------------------cctgtgtacacat------------------------------
                   Aardvark  ---------------------------catatttacatac------------------------------
                  Armadillo  ---------------------------cataagtatatac------------------------------
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  -------aatttt-t-agcctgtttga---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
                      Chimp  -------aatttt-t-agcctgtttga---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
                    Gorilla  -------aatttt-t-agcctgtttga---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
                  Orangutan  -------aatttt-t-agcctgtttta---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
                     Gibbon  -------aatttt-t-agcctgtttta---tcc-attaaata-ta-t--attg--gcagcaattcct-ca
                     Rhesus  -------aatttt-t-agcctgtttta---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
        Crab-eating macaque  -------aatttt-t-agcctgtttta---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
                     Baboon  -------aatttt-t-agcctgtttta---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
               Green monkey  -------aatttt-t-agcctgtttta---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
                   Marmoset  -------aatttt-t-agcctgtttta---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
            Squirrel monkey  -------aatttt-t-agctggtttta---tcc-attaaata-ta-t--attg--ggagcaattccc-ca
                   Bushbaby  -------agtttt-t-aacctgcagta---ttc-atcaaaca-ta-c--attc--ggagcaattctc-ca
         Chinese tree shrew  -------actttt-t-cacctgttata---ttc-atcaaata-ta-t--atcg--ggagcgattccc-ta
                   Squirrel  -------aggttt-t-attctggttta---ttc-attaaata-ta-t--cttg--ggagcaattccc-ca
     Lesser Egyptian jerboa  -------agt-------------ttta---ttc-aagaagta-gg----------------acttta-ta
               Prairie vole  -------agtctt-t-attctgcttta---ttc-attacacg-tatt--ttta--taaataatttttata
            Chinese hamster  -------a-tctt-t-attttgcttta---ttc-attacata-ta-t--ttca--gagacaatttct-ca
             Golden hamster  -------agtctt-t-attctgcttta---ttc-attaaata-ta-t--ttta--gaaacaatttct-ca
                      Mouse  -------agtctt-t-attttgctttg---ttc-attaatta-ta-t--attg--aaaacagtttct-ta
                        Rat  -------agtttt-t-attctgctttg---ttc-attaagta-tg-t--attg--gaaacaatttct-ca
             Naked mole-rat  -------agtttt-taattttgcctca---ttc-attaagca-ga-c--tttg--gaaggaattcct-ca
                 Guinea pig  -------aatttt-t-attttgcctta---ttc-attagaca-ta-t--acta--gaaggaattcct-c-
                 Chinchilla  -------catttt-t-atttggccgta---ttc-attaaaca-ta-t--atta--gaaggaattcct-ca
           Brush-tailed rat  -------aatttt-t-attttgtctta---ttc-attaaaca-ta-t--attg--aaagtaattcct-ca
                     Rabbit  -------aatgtt-t-aactg----tg---tta-attaaaca-ta-t--a-------agcaatttcc-ta
                       Pika  -------tatgtt-t-cactgattttg---ttc-attaagca-ta-c--attg--ggatcaattcta-ta
                        Pig  gtgtgtgtagttt-c-aaccagcttta---atc-cttaaacaaca-t--attg--ggggcaattcat-ta
                     Alpaca  -------agtttt-c-aactggcttta---atc-attcaacagta-t--attg--gcaacaattccc-ca
             Bactrian camel  -------agtttt-c-aactggcttta---atc-attcaacacta-t--attg--gcaacaattccc-ca
                    Dolphin  -------cgtttt-c-aacctgcttta---atc-actaaacaaaa-t--attg--gtagcaattccc-ca
               Killer whale  -------cgtttt-c-aacctgcttta---atc-actaaacaaaa-t--attg--gtagcaattccc-ca
           Tibetan antelope  -------cctttt-c-aatctgcttta---atc-actaagcaata-t--attg--agagaaattctc-ca
                        Cow  -------cctttt-c-aatctgcttta---atc-actaagcaata-t--attg--agagaaattctc-ca
                      Sheep  -------cctttt-c-aatctgcttta---atc-actaagcaata-t--attg--agagaaattctc-ca
              Domestic goat  -------cctttt-c-aatctgcttta---atc-actaagcaata-t--attg--agagaatttctc-ca
                      Horse  -------ggtttt-c-aacctgcttta---atc-attaaataata-t--attg--ggagcaattctc-ca
           White rhinoceros  -------agtttt-t-aacctgcttta---atc-attaaacaata-t--attg--ggagcaattccc-ca
                        Cat  -------agttttgc-aacttgctttaatcatc-attaaacaaca-t--atgg--agagcgattcgt-ca
                        Dog  -------agtttt-c-gacttgctttaataatc-attaagcaata-t--attg--ggagcagttcct-ca
                    Ferret   -------agtttt-c-agcttgctttaataatc-attcaacatta-t--attg--aaaataattcct-ca
                      Panda  -------agtttt-c-agcttgctttaataatc-attcaacaata-t--attg--ggagcaattcct-ta
             Pacific walrus  -------agtttc-c-agcttgctttaataatc-attcaacaata-t--attg--ggagcaattcct-ca
               Weddell seal  -------agtttt-c-agcttgctttaataatc-attcaacaata-t--attg--ggagcaattcct-ca
           Black flying-fox  -------agtttt-c-aacctgcttta---atc-attaaacaaca-t--attg--gaagaggtttct-ca
                    Megabat  -------agtttt-c-aacctgcttta---atc-attaaacgaca-t--attg--gaagaggtttct-ca
              Big brown bat  -------agtttc-t-gacctgcttta---atc-ataaaatgaca-t--attg--gaagaaattccc-ca
       David's myotis (bat)  -------agtttt-c-aacctgtttta---aac-ataaaataaca-t--attg--aaagaaattccc-ca
                   Microbat  -------agtttt-t-gacctgtttta---atc-ataaaataaca-t--attg--aaagaaattccc-ca
                   Hedgehog  -------agtttt---gatctgcctta---atc-attaagtgata-t--attg--ggagcaatttct-ta
                      Shrew  -------tgtgta---aatgtgcttt----tta-actggatttaa-taatttg--ggagtaattcct-ca
            Star-nosed mole  -------cgag--------------------------aggtttgg-t--ttgg--ggagccattctc-ca
                   Elephant  -------agtttt-t-aacctgcttta---ttc-attaaacagtg-t--aatg--ggagca--tctt-ta
        Cape elephant shrew  -------agtttg-t-aacctgcctta---ctc-atgaaacaatg-t--aataatggagtc--tctc-ta
                    Manatee  -------agtttt-t-aacctgcttta---ttc-attaaacagta-t--aatg--ggggca--tctc-ta
           Cape golden mole  -------cgtttt-t--acttgtttta---ttc-atcaaacagta-t--aatg--ggagca--tctc-tg
                     Tenrec  -------gggtgt-g-aacctgctcga---ttt-atgaaatagaa-t--aatg--ggagca--gctc-tc
                   Aardvark  -------agtttt-t-aacctgcttta---ttc-actaaacagta-t--aagg--gaagca--tctc-tc
                  Armadillo  -------ggtttt-t--acatacttta---cttaattaaccaata-t--attg--ggagcaattccc-ca
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ta-ttttaaaatattccacaagaatgtggt---gtttt--gtggatgtat-aattttctatcata----t
                      Chimp  ta-ttttaaaatattccacaagaatgtgat---gtttt--gtggatgtat-aattttctatcata----t
                    Gorilla  ta-ttttaaaatattccacaagaatgtgat---gtttt--gtggatgtat-aattttctgtcata----t
                  Orangutan  ta-ttttaaaatattccacaa-aatgtgat---gtttt--gtggatgtat-aattttctatcata----t
                     Gibbon  ta-ttttaaaatattccacaagaatgtgat---gtttt--gtggatgtat-aattttctatcaca----t
                     Rhesus  ta-ttttaaaatatttcacaagaatatgat---gtttt--gtggatgtgt-aattttctatcata----t
        Crab-eating macaque  ta-ttttaaaatatttcacaagaatatgat---gtttt--gtggatgtgt-aattttctatcata----t
                     Baboon  ta-ttttaaaatatttcacaagaatatgat---gtttt--gtggatgtgt-aattttctatcata----t
               Green monkey  ta-ttttaaaatatttcacaagaatgtgat---gtttt--gtggatgtat-aattttctatcata----t
                   Marmoset  ta-ttttaaaatattccacaagaatgtgat---atttt--gtggatgtat-aattttctatcatt----t
            Squirrel monkey  ta-ttttaaaatattccacaagaatgtgat---atttt--gtggatgtat-aattttctatcatt----t
                   Bushbaby  tg-ttttaaaatattccacaagaatgttgt---g-ttt--gtggatgcat-aatttctcaacata----g
         Chinese tree shrew  ta-ttttcaaatagtccacaagaatgtgat---gtttt--gtggatgcat-aattttcaatcata----g
                   Squirrel  ta-ttttaaaatatccctcaagagtgtgacgtcgttt-----ggatgcct-aatttgg-atcata----a
     Lesser Egyptian jerboa  tg-tttaaaaatatcccacaggaatgt------gtctc--agg-atatat-aattttctatcata----t
               Prairie vole  ---ttttaaagtatctcacaagaatgt------gtttc--aggaatacat-aatttttgatctca----t
            Chinese hamster  ---ttttgaaatatctcacaggaatgt------gttta--gggaatgcat-aatttttgatcaca----t
             Golden hamster  ---ttttaaaatatctcacaggaatgc------gttta--gggaatgcat-aattttt-atcaca----t
                      Mouse  tc-ttttaagacatcccacaggaatgt------gctta--gggaatgtgt-agtttt--atcata----t
                        Rat  tc-ttttaagatatctcacaggaatgt------gttta--ggagatgcat-agtttt--atcaca----t
             Naked mole-rat  ta-ttttaaaatacctcacatgaatgt------aattattttggatgaat-aatttttgattata----c
                 Guinea pig  -a-ttttaaaacacct-atgagaatgt------aattattttggatgcat-aatttttgatag-------
                 Chinchilla  ta-tgttaaaatactccataagaatga------aattattttggatgcat-aattttttatcg-------
           Brush-tailed rat  ta-ttttaaaatagctcacaagaat---------attattttacatgcat-aatttttcatca-------
                     Rabbit  ta-ttttcca-tatttcacaagaatg-------ttttg-----agtgcat-aacttttaattata----t
                       Pika  ca-tttgtag-tatttt-----aatgt------ttttt-----tgtgtgt-aattttagatcata----c
                        Pig  ta-tttttaaatattccacaagaatgtgat---gtctt--atgggtgctt-aattttcaaccata----c
                     Alpaca  ta-ttttaaaatattccacaagaatgtgac---gtttt--gtggatgctt-aattttcgatcata----t
             Bactrian camel  ta-ttttaaaatattccacaagaatgtgac---gtttt--gtggatgctt-aattttcgatcata----t
                    Dolphin  ta-ttttaaaatagtccacaagaatatgat---gtttt--atagatgctt-agttttcaatcata----t
               Killer whale  ta-ttttaaaatagtccacaagaatatgat---gtttt--atagatgctt-agttttcaatcata----t
           Tibetan antelope  ta-ttttaaaatatcccacaagaatgcgat---gtttt--gtggatgctt-aattttcgatcatc----t
                        Cow  ta-ttttaacatatcccacaagaatgtgat---gtttt--gtggatgctt-aattttcgatcata----t
                      Sheep  ta-ttttaaaatatcccacaagaatgtgat---gtttt--gtggatgctt-aattttcgatcata----t
              Domestic goat  ta-ttttaaaatatcccacaagaatgtgat---gtttt--gtggatgctt-aattttcgatcata----t
                      Horse  ta-tttttaaatattccacaagaatgtgat---gtttt--gtggatgctt-aatttttgatcaca----t
           White rhinoceros  ta-tttttaaatattctacaagaatctgat---gtttt--gtggatgctt-aattttcgatcata----t
                        Cat  t--tttctaaacattccataagaatgcagg---gttct--atggatgcat-aatttctgatcact----t
                        Dog  ta-tttttaaacattccgcaagaaggcaac---gttct--ctggctgcat-aatttctgatcata----t
                    Ferret   ta-tttttaaacattccacaagaagtcagt---gtttc--gcggatgcat-aatttctgatcata----g
                      Panda  tattttttaaacattctaccaggaggcaat---gtttc--gtggatgcat-aatttctgattgta----g
             Pacific walrus  ta-tttttaaacattccacaagaaggcaat---gtttt--gtggatgcat-aatttctgatcata----g
               Weddell seal  ta-tttttaagcattccacaagaaggcaat---gtttc--gtagatgcat-aatttctgatcata----g
           Black flying-fox  tg-tttttaaatattccactagaatgtgat---atttt--gtggaggcat-aattttcgatcata----t
                    Megabat  tg-tttttaaatattccactagaatgtgat---atttt--gtggaggcat-aattttcgatcata----t
              Big brown bat  ta-ttttta---atttcacaagaatgtgat---atttt--gtggaggcat-aattttctatcaga----t
       David's myotis (bat)  ta-tttttaaatattccataagaatgtgat---atttt--gtggaggcat-agttttcaatcata----t
                   Microbat  ta--ttttaaacattccataagaatgtgat---atttt--gtggaggcat-aattttcaatcata----t
                   Hedgehog  ta-tttctgaatatttcacaagaattagat---g-tta--gtaaatatagaatttttttatcaca----t
                      Shrew  ta-tttaaaaaatttaacta-gagtgtgat---atctt--gttgatgc----------------------
            Star-nosed mole  ta-ttttgaaatatttcctaggaatgtgat---gctcg--gtggatgcat-gctttcccatcaca----c
                   Elephant  ta-tttttaaatattccacatgaatgcctt---atttt--gtgcctgcat-aatttttgatcata----t
        Cape elephant shrew  ta-tccgtaaaca-tccacaagga----------------------------------gactgta----t
                    Manatee  ta-tttttaagtattccacatgaatgcctt---atgtt--gtggctgcat-aatttttgatcata----t
           Cape golden mole  ta-tttgtaagtattccccaagtatgcctt---atttt--gtgtctgcat-attttcttattgtacaggt
                     Tenrec  ta--ttaaaaatattccataagaatgcatt---ttttt--gtggctgcag-aatttttgatcata----t
                   Aardvark  ta-tttttaaatatcccacaagaatgcctt---ctttt--gtggttgcat-aatttttgatcaca----c
                  Armadillo  ta-ttttaaaatattccacaaaagtgtcat---g---t--atgactgcat-acttttcgaccatc----t
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  agatgtcccactaaat-----------gtc-c-aattattgaatgttt----atatgtg-cattattttt
                      Chimp  agatgtcccactaaat-----------gtc-c-gattattgaatgttt----atatgtg-cattattttt
                    Gorilla  agatgtcccactaaat-----------gtc-c-gattattgaatgttt----atatgtg-cattattttt
                  Orangutan  agatgtcccactaaat-----------gtc-t-aattattgaatgttt----atatgtg-cattattttt
                     Gibbon  agatgtcccactaaat-----------gtc-t-gattattgaatgttt----atatgtg-cattattttt
                     Rhesus  agatgtcccactaaat-----------gtc-t-gattattgaatgttt----atatgta-cattattttt
        Crab-eating macaque  agatgtcccactaaat-----------gtc-t-gattattgaatgttt----atatgta-cattattttt
                     Baboon  agatgtcccactaaat-----------gtc-t-gattatttaatgttt----atatgta-cattattttt
               Green monkey  agatgtcccactaaat-----------gtc-t-gattattgaatgttt----atatgta-cattattttt
                   Marmoset  agatgtcccactaaat-----------gtc-t-gattattgaatgttt----atatgtg-ccttattttt
            Squirrel monkey  agatgtcccactaaat-----------gtc-t-gattattgaatgttt----atatttg-cattattttt
                   Bushbaby  aggtatccccttaaat-----------gtc-t-aattattaaatgttt----atatatt-ca--attttt
         Chinese tree shrew  aagtgtcccactaaat-----------gtc-caaagtatcgaatgttt----aaatgtg-c---attttt
                   Squirrel  aggagtctcactaaat------------at-c-caatgttgaatgtat----atgtgtgcat--tatttt
     Lesser Egyptian jerboa  aggaatctttctaaat------------gcat-aattaataagtatat----atatatt-tc--catttt
               Prairie vole  ggcagtg--atcacat------------tc-c-aaataataaatgtat----aaatgtg-----cttttt
            Chinese hamster  gggagtattactaaac------------tc-c-aaataatgaatgtgt----aattatg-----attttt
             Golden hamster  gtgagtattagaaaac------------tc-c-aaataatgtatgtat----aattatg-----attttt
                      Mouse  -ggagtattactgaac------------tc-c-aaataatgaaggtat----aaatgtg-gt--tttttt
                        Rat  gggagtattactaaac------------tc-c-aaataatgaaggtat----aaatgtgctt--tttttt
             Naked mole-rat  agcagtctcactaaat-----------gtt-c-aattattgaatgcat----atatgtg-ca--gttttt
                 Guinea pig  ---aatctcactaaat-----------gtc-c-aattatcaaatgtac----atttgtg-ca--a-tttt
                 Chinchilla  ---aatctcactaaat-----------gtc-c-tattattgaatgcat----atatgtg-ca--gttttt
           Brush-tailed rat  ---aatctcactaaaa-----------gtc-c-tattattgaatgtat----atatgtg-ca--gttttt
                     Rabbit  --gtgtc---ttaact-----------ctc-c-cattattgactattt----atatgta-ta--attttt
                       Pika  aggtgtc---ctaaat-----------gtc-c-agttattgactgttt----atatgtg-ta--a-tttt
                        Pig  gggaggcccacttattacatatgggaggtc-c-aattattgaatgttt----ctatgtg-ca--attctt
                     Alpaca  aggtgtcccacttagt-----------gtc-c-aattattgaatgttt----ctatgtg-ca--attttt
             Bactrian camel  aggcgtcccacttact-----------gtc-c-aattattgaatgttt----ctatgtg-ca--attttt
                    Dolphin  aggtgccccgctaaat-----------gtc-c-aattattgaatgctt----ctatgtg-ta--attttt
               Killer whale  aggtgccccgctaaat-----------gtc-c-aattattgaatgctt----ctatgtg-ta--attttt
           Tibetan antelope  aagtgttccactaaat-----------gtc-c-aattattgaaagttt----ctaggtg-ca--attttt
                        Cow  aagtgttccactaaat-----------gtc-c-aattattgaaagttt----ctatgtg-ca--attttt
                      Sheep  aagtgttccactaaat-----------gtc-c-aattattgaaagttt----ctacgtg-ca--attttt
              Domestic goat  aagtgttccactaaat-----------gtc-c-aattattgaaagttt----ctacgtg-ca--attttt
                      Horse  aggtgtcccgctaaat-----------gtt-c-cattactggatgttt----atatgtg-ca--attttt
           White rhinoceros  aggtgtcccactaaat-----------gtt-c-aattactgaatgttt----atatgtg-cg--atttgt
                        Cat  aagtgtcccactaaat-----------gtc-t-agttgtccaatgttt----ataggtg-ca--gttttt
                        Dog  aggtgtctcactaaat-----------gtc-c-tgttattgaatgcat----atatgtg-ca--attttt
                    Ferret   aggtgtcccactaaat-----------gtc-c-agttactgaatgttt----atatgtg-ca--gtcttt
                      Panda  aggtgtcccactaaat-----------gtt-c-agttattgagtgttt----atatgtg-ca--attttt
             Pacific walrus  agttgtctcactaaat-----------gtc-c-agttattgaatattta---atatgtg-ca--attttt
               Weddell seal  agttgtcccactaaat-----------gtc-c-agttattgaatgttta---atatgtg-ca--attttt
           Black flying-fox  aggtgacccactaaat-----------gtc-c-aattattgagtgtgtgtttatatgtg-ta--attttt
                    Megabat  aggtgacccactaaat-----------gtc-c-aattattgagtgtgtgtttatatgtg-ta--attttt
              Big brown bat  aggtgttccactaatt-----------gtc-c-aattattgagtgtttgtgtatatgtg-ca--actttt
       David's myotis (bat)  aggtgtcccactaatt-----------gtc-c-aattattgagtgtttatgtatatgta-ca--attttt
                   Microbat  aggtgtcccactaatt-----------gtc-c-aattattgagtgtttatgtatatgta-ca--attttt
                   Hedgehog  tggtatcccactaa-t-----------gtt-c-atagattgaatatgt----atatgta-ta--gtcttt
                      Shrew  --------------------------------------ataaatattt----atatatg-ca--gttttt
            Star-nosed mole  aggtgtctgactac-----------------------aatgaaagttt----gaatgta-cg--attttt
                   Elephant  aagtgtcccactaaat----gcccaatgtc-c-agttatcgaatgttt----agatgtg-tat-cttttt
        Cape elephant shrew  agctgtcactcttggt----ttccaagacc-t-aattattaaat-ttt----gtatgtt-ta--ccttct
                    Manatee  aagtgtcctactaaat----gcccaatgtc-c-aattattgaatgttt----atttgtg-tatctttttt
           Cape golden mole  aggtgtccatttaaat----gtccaatgtc-c-aactaattaatgtgt----atatgtg-ta--tctttg
                     Tenrec  aggtgttccaatagat----gcccaacgtc-c-aattcttgaatgtat----aggtgtg-tgatcttttt
                   Aardvark  agatgtcccac-aagt----gcccaatgtg-c-aattactgaatgctt----acatgtg-tat-ctcttt
                  Armadillo  agctgtcccactaaat----gctcaatgtc-c-aattattgaatgctt----gt---tg-tat-tttttt
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  gctgttataaataactgaaggaata-tctttccatataaatatctgtgtgcttttct-g---------gt
                      Chimp  gctgttataaataactgaaggaata-tctttccatataaatatctgtgtgcttttct-g---------gt
                    Gorilla  gctgttataaataactgaaggaata-tctttccatataaatatctgtgtgcttttct-g---------gt
                  Orangutan  gctgttataaataactgaaggaata-tctgtccgtataaatatctgtgtgcttttct-g---------gt
                     Gibbon  gctgtgataaataactgaatgaata-tctttccatataaatgtctgtgtgcttttct-g---------tt
                     Rhesus  gctgttataaataactgaaggaata-tctttccatataaatctctatgtgcttttct-g---------gt
        Crab-eating macaque  gctgttataaataactgaaggaata-tctttccatataaatctctatgtgcttttct-g---------gt
                     Baboon  gctgttataaataactgaaggaata-tcttttcatataaatctctatgtgcttttct-g---------gt
               Green monkey  gctgttataaataactgaaggaata-tctttccatataaatctctatgtgcttttct-g---------gt
                   Marmoset  gctgttataaataactgaaggaata-tctttccaaataaatctctgtgtgcttttct-g---------gt
            Squirrel monkey  gctgttataaataactgaaggaata-tctttccatataagtatctgtgtgcttttct-g---------gt
                   Bushbaby  gctgttataaataatttaaggaata-tctttccatataaatgtctgtgtgcttttct-g---------gt
         Chinese tree shrew  gctgtcgtaaataatttaaagagta-tctttccatataaatctatgtatgcttttct-g---------gt
                   Squirrel  gctgttgcaaataatttaaggaacatttttttcatataaatctctgtgtgcttttct-g---------tt
     Lesser Egyptian jerboa  gtaattataagtgatttaaagaata-tattcccatataaatctctgtgtgctttttt-g---------tt
               Prairie vole  gctat----aatgatttaaggaata-tatttctacataaatctttgtgcacccttct-g---------tt
            Chinese hamster  gctat----aatgatttaagaaaca-cctttgcatataaatctttgtctgcccttct-g---------tt
             Golden hamster  gctat----a---ttttaagaaata-tctttccatataaatctttgtgtgcccttct-g---------tt
                      Mouse  gctattataaatgatttaagaaatc-tgtttccatataaatctttgtatgcccttct-g---------tt
                        Rat  gctattataaatgatttgagaaatc-tgtttccatataaatctttgtgtgcccttct-g---------tt
             Naked mole-rat  gatgttataaataatttaagaaata-tctttccatataaatttctgtgtgcttttct-g---------gt
                 Guinea pig  gatgctataaataatttaagaaata-tctttccatataaatctctgtgtgtttttct-g-----------
                 Chinchilla  gatgttataaataatctaacaaata-cctttccatataaatctctgtatgctttttt-gttt------tt
           Brush-tailed rat  gatgctatgaataatttaagacata-tcgtcccatataaatctctgtgtgctttttt-g---------gt
                     Rabbit  actgttataaataattaaaggtata-tctttccatatacatctctgaatgtttttct-g-----------
                       Pika  gctcctataaatgattaaaggtata-ttttctcatgtaaa--tctgagtgattttct-a-----------
                        Pig  gctgttatag----tttaaggaata-tctttccatataaacctctgtgtgcttttct-gtttca----tt
                     Alpaca  tctgttataa----ttgaaggaata-tctttccatataaacctctgtgtgcttttct-gt--------tt
             Bactrian camel  gctgttataa----ttgaaggaata-tctttccatataaacctctgtgtgcttttct-gttttttgtgtt
                    Dolphin  gctgttataa----tttaaggaata-tctttccatgtaaatctctgtgtgcttttct-g---------gt
               Killer whale  gctgttataa----tttaaggaata-tctttccatgtaaatctctgtgtgcttttct-g---------tt
           Tibetan antelope  gctgttataa----tttaaggaatattttttccatataaacctcagtgagctttttt-g---------tt
                        Cow  gctgttataa----tttaaggaata-tctttccatataaacctcagtgagctttttt-gt--------tt
                      Sheep  gctgttataa----tttaaggaata-tttttccatataaacctcagtgagctttttt-g---------tt
              Domestic goat  gctgttataa----tttaaggaata-tttttccatataaacctcagtgagctttttt-g---------tt
                      Horse  tctgtc-taa------taaggaata-tctttccatataaatctctgtgtgcttttct-g---------tt
           White rhinoceros  gctgttatga----tttaaggaata-tctatccatataaatctctgtgtgcttttct-g---------tt
                        Cat  gctgttatca----tttaaagaata-tctttccatataaatctctgtgtgcttttct-g---------gt
                        Dog  gctgttatag----tttaaggaata-tctttccatataaacctctgtgtgcttttct-g---------tt
                    Ferret   gctgttacaa----tttaaggaata-tctttccatataaacctctgtgtacttttct-g---------tt
                      Panda  gctgttataa----tttaaggaata-tctttccatataaacctctgtgtgcttttct-g---------tt
             Pacific walrus  gctgttataa----tttaaggaata-tctttccatataaacctctgtgtgcttttct-g---------tt
               Weddell seal  gctgttataa----tttaaggaata-tctttccatagaaacctctgtgtgcttttct-g---------tt
           Black flying-fox  actgttataa----ctcaaagaata-tcttttcatataaatctctgtgtgcttttct-g---------tt
                    Megabat  actgttataa----ctcaaagaata-tcttttcatataaatctctgtgtgcttttct-g---------tt
              Big brown bat  gctgttataa----cttaaggaata-tttttccatataaatatatttttgcttttct-g---------tt
       David's myotis (bat)  gctattgtaa----cttaaggaata-tctttccatataaatatatttgtgcttttct-g---------tt
                   Microbat  gctattataa----cttaaggaata-tctttccatataaatatatttgtgcttttct-g---------tt
                   Hedgehog  gctgtttcaa----tttaagaaatg-tttctgcatataaatctatatgtgc-----------------tt
                      Shrew  gctgttataa----ttcaagatatg-tatttctatataaatctctgtgtgcttttct-g---------tt
            Star-nosed mole  gctgttttaa----cttaaggaatg-tctttccttataaatctctgtgtgctcttct-ggttt-----tc
                   Elephant  gccgttataaataatttaagaacta-tccttccatataaatctctgtgtgcttttct-----------tg
        Cape elephant shrew  gctgttatcaataat-----aacta-tccttccatataaatatctctgtgtttctct-g---------tt
                    Manatee  gctgttataaataatttaagaacta-tccttccatataaatctctgtgtgcttttctgg---------tt
           Cape golden mole  gctgttataaataattcaaaaacta-tgcttccatataaatctctatgtgcttttct-g---------gt
                     Tenrec  gttatcaaaagcaatttaaggacta-cccttccatataaacctttgtgtgcttttct-g---------tt
                   Aardvark  gctgttagaaataatttacaaactg-tccttctatgtaaatctctgtgtgcttttct-g---------gt
                  Armadillo  gctgtta----taatttaagaaata-tccttccatataaa--tctgtgtgcttttct-g---------gt
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  t-t--------------t--ttc----------tccc-tagg-aaaaattcgtagacatggaattcctgg
                      Chimp  t-t--------------t--ttc----------tccc-tagg-aaaaattcgtagacatggaattcctgg
                    Gorilla  t-t--------------t--ttc----------tccc-tagg-aaaaattcgtagacatggaattcctgg
                  Orangutan  t-t--------------t--ttc----------tccc-tagg-aaaaattcgtagacatggaattcctgg
                     Gibbon  t-t--------------t--ttc----------tccc-tagg-aaaaattcgtagacatggaattcctgg
                     Rhesus  t-t--------------t--ttc----------tccc-tagg-aaaaattcatagacatggaattcgtgg
        Crab-eating macaque  t-t--------------t--ttc----------tccc-tagg-aaaaattcatagacatggaattcgtgg
                     Baboon  t-t--------------t--ttc----------tccc-tagg-aaaaattcatagacatggaattcctgg
               Green monkey  t-t--------------t--ttc----------tccc-tagg-aaaaattcatagacatggaattcctgg
                   Marmoset  t-t--------------tc-tcc----------cccc-tagg-ataaattcgtagatgtggaattcctgg
            Squirrel monkey  t-t--------------tc-tcc----------cccc-tagg-ataaattcgtagacgtggaattcctgg
                   Bushbaby  t-t--------------tctttc----------cccc-tagg-ataaattcacagacatggaattcctgg
         Chinese tree shrew  t-t--------------t--ttc----------ctcc-tagg-ataaattcgtagatgtggaattcctgg
                   Squirrel  --t--------------t--ttt----------cccc-tagg-ataaatt--cagatgtggaattcctgg
     Lesser Egyptian jerboa  t-t-------------at--ttc----------tccc-tagg-ataaattaatagacatggaattcctgg
               Prairie vole  c-t--------------t--tcc----------cccc-taggaaaaaatt--cagatgtggatttcatgg
            Chinese hamster  c-t--------------t--tcc----------cccc-agggaaaaaatt--cagacatggagttcgtgg
             Golden hamster  ctt--------------t--ttc----------ccct-agggaaaaaatt--cagacatggagttcgtgg
                      Mouse  c-t--------------t--ttc----------cttc-tagg-aaaaaat--cagacatggaattcatgg
                        Rat  c-t--------------t--ttc----------ctcc-tagg-aaaaatt--gagacgtggaatttgtgg
             Naked mole-rat  --t--------------t--ttc----------tccc-tagg-ataaattcggaaatgtggaattcatgg
                 Guinea pig  -----------------t--cct----------cccc-cagg-ataaattcatagatgcggaattcatgg
                 Chinchilla  --t--------------t--ttt----------cccc-cagg-ataaattcgtagacgtggaattcatgg
           Brush-tailed rat  --t--------------t--ttc----------ccca-tagg-ataaattcgtagacgtggaattcgtgg
                     Rabbit  --t--------------t--ttt----------cccc-cagg-ataaattcatagacatggaattcctgg
                       Pika  --t--------------t--tcc----------ccccacagg-ataaattcataggcatggcgttcctgg
                        Pig  t-t-------------gt--ttt----------ctcc-tagg-ataaattcgcagacgtggaattcctgg
                     Alpaca  t-t-------------tt--ttt----------ctcg-tagg-ataaattcatagacgtggaattcctgg
             Bactrian camel  t-t-------------tt--ttt----------ctcg-tagg-ataaattcatagacgtggaattcctgg
                    Dolphin  t-t--------------t--ttt----------ctcc-tagg-gtaaattcgtagacgtggaattcctgg
               Killer whale  t-t--------------t--ttt----------ctcc-tagg-gtaaattcgtagacgtggaattcctgg
           Tibetan antelope  t-t--------------t--ttt----------ctcc-tagg-ataaattcatagctgtgaaagtcctgg
                        Cow  t-t-------------tt--ttt----------ctcc-tagg-ataaattcatggctgtgaaattcctgg
                      Sheep  t-t-------------gt--ttt----------ctcc-tagg-ataaattcatagctgtgaaagtcctgg
              Domestic goat  t-t-------------gt--ttt----------ctcc-tagg-ataaattcatagctgtgaaagtcctgg
                      Horse  t-t-------------tt--t------------cctc-tagg-ataaatgcttagacgtggaattcctgg
           White rhinoceros  t-t-------------tt--t------------cccc-tagg-ataaattcttaaacgtggaattcctgg
                        Cat  t-t-------------tt--gtt----------tccc-tagg-ataaatttgtagacgtggaatttccgg
                        Dog  t-t-------------tt--ttttttttttacccccc-tagg-atcaattcatagacgtggaatttctgg
                    Ferret   t-t-------------tt--tttttt-----tttccc-tagg-ataaattcgtagatgtggaatttctgg
                      Panda  t-t-------------tt--ttt----------tccc-tagg-ataaattcgtagacgtggaatttctgg
             Pacific walrus  t-t-------------tt--ttttt------cccccc-tagg-ataaattcgtagacgtggaatttctgg
               Weddell seal  t-t-------------tt--ttttt--------cccc-tagg-ataaattcgtagacgtggaatttctgg
           Black flying-fox  t-c-------------ct--c------------cccc-cagg-ataaatttgtaggcgtggaattcctgg
                    Megabat  t-c-------------ct--c------------cccc-cagg-ataaatttgtaggcgtggaattcctgg
              Big brown bat  t----------------t--t------------ccct-tagg-ataagtttttagatgtgaaatttctgg
       David's myotis (bat)  t----------------t--t------------tcct-tagg-ataaatttttagatgtggaatttctgg
                   Microbat  t----------------t--t------------ccct-tagg-ataaatttttagatgtggaatttctgg
                   Hedgehog  t-t-------------tt--tttt---------cc---tagg-atatactcatagatgtggaattcctgg
                      Shrew  t-c-------------tt--tttt---------ccct-taga-gtaaattcgtagctgtggaattcttgg
            Star-nosed mole  t-t-------------tt--tttt---------cctt-cagg-ataaattcatagacgtggaattcctgg
                   Elephant  t-t--------------t--ctc----------cccc-cagg-acaaatgtgtagctgtggaattcctgg
        Cape elephant shrew  t-t--------------t--ctc----------tccc-tagg-gtaaatttgtcgatgtggaatccctgc
                    Manatee  t-t--------------t--cac----------cccc-tagg-ataaattcgtagacgtggaattcctgg
           Cape golden mole  t-t--------------t--ctc----------ctca-tagg-ataaattcatagacgtggatttcctgg
                     Tenrec  t-ttcctacaccccacct--ccc----------ctcc-caga-ataaatttgtagacgtggaattcctgg
                   Aardvark  t-t------------------tt----------cccc-tagg-ataaattcgtagccgtggaatttctgg
                  Armadillo  t-t------ctcccccac--ccc----------ctcc-cagg-ataaattcgtagacgtggaattcctgg
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  at-c-aaat-ggtatgaaacaatttaaggttt-----ct-tc-cc-c------------ccaacac-c--
                      Chimp  at-c-aaat-ggtatgaaacagtttaaggttt-----ct-tc-cc-c------------ccaacac-c--
                    Gorilla  at-c-aatt-ggtatgaaacagtttaaggttt-----ct-tc-cc-c------------ccaacac-c--
                  Orangutan  at-c-aaat-ggtatgaaacagtttaaggttt-----ct-tc-cc-c------------ccaacac-c--
                     Gibbon  at-c-aaat-ggtatgaaacagtttaagtttt-----ct-tc-cc-c------------ccaacac-c--
                     Rhesus  at-c-aaat-ggtatgaatcagtttgaggttt-----ct-tc-ct-c------------ccaacac-c--
        Crab-eating macaque  at-c-aaat-ggtatgaatcagtttgaggttt-----ct-tc-ct-c------------ccaacac-c--
                     Baboon  at-c-aaat-ggtatgaatcagtttgaggttt-----ct-tc-ct-c------------ccaacac-c--
               Green monkey  at-c-aaat-ggtatgaatcagtttgaggttt-----ct-tc-ct-c------------ccaacac-c--
                   Marmoset  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-tc-tt-c------------aaaacac-c--
            Squirrel monkey  at-c-aaat-ggtatgaaccagtttaaggt--------t-tc-tt-c------------aaaacac-c--
                   Bushbaby  ac-c-aaat-ggtacgaaccagtttaagcatt-----tt-tc-at-c------------cccatat-g--
         Chinese tree shrew  at-c-aaat-ggtatgaaccagtttaaggt-t-----cc-cc-tg-c------------ccaatac-a--
                   Squirrel  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-tctcc-t-g--------acccaagac-a--
     Lesser Egyptian jerboa  at-c-aaat-ggtatgaatcacttcaaggttt-----ctctt-tc-t-g--------tcccaaaac-a--
               Prairie vole  at-c-atatgggtatggatcagtttcaggttt-----ct-tctct-t-g--------t--caaaac-a--
            Chinese hamster  at-c-aaat-ggtatgaatcagtttcaggttt-----ct-tc-cc-t-g--------t--caacac-a--
             Golden hamster  ac-c-aaat-ggtatgaatcagtctccggttt-----ct-tc-cc-t-g--------t--caagac-a--
                      Mouse  at-t-aact-ggtatgaatcagtttcaagttt-----ct-tc-cc-t-----------------------
                        Rat  at-t-aaat-ggtatgaatcagtttcaagtat-----c--tc-cc-t-----------------------
             Naked mole-rat  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-cc-cc-cag--------tctcaagac-a--
                 Guinea pig  at-c-aaat-ggtatgaaccagtttaagtttt-----tc-cc-cc-cag--------tctcaagac-a--
                 Chinchilla  at-c-aaat-ggtatgaaccattttaaggttt-----ct-cc-cc-cag--------acccaagac-a--
           Brush-tailed rat  at-c-aaac-ggtatgaaccagtttaaggttt-----ct-tc-cc-t-g--------tcccaagac-a--
                     Rabbit  at-c-aaat-ggtatgaagcagtttaaggttt-----ct-cc-ct-ttg--------ccccaatac-a--
                       Pika  at-c-aaat-ggtatgaagcagtttaaggttt-----ct-tc-cc-tta--------cccaaatac-att
                        Pig  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-cc-cc-c-cgct-----accctatac-a--
                     Alpaca  at-caaaat-ggtatgaaccagtttaaggttt-----ct-ct-cc-c-tg-------actccttac-a--
             Bactrian camel  at-caaaat-ggtatgaaccagtttaaggttt-----ct-ct-cc-c-tg-------accccttac-a--
                    Dolphin  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-cc-cc-a-tc-------accccatac-a--
               Killer whale  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-cc-cc-a-tc-------accccatac-a--
           Tibetan antelope  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-cc-tc-t-accccgccaagcccatacaa--
                        Cow  at-c-aaat-ggtatgaaccagtttaaggttt-----tt-cc-cc-t-accccgccaaccccatacaa--
                      Sheep  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-cc-cc-t-accccgccaaccccatacaa--
              Domestic goat  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-cc-cc-t-accccgccaaccccatacaa--
                      Horse  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-cc-cctc-accccc---accccatgc-a--
           White rhinoceros  at-c-aaat-ggtatgaaccagtttaaggttt-----ct-cc-tcct-actccc---actccatgc-g--
                        Cat  at-c-aaat-ggtatgaaccagtttaagattt-----gt-cc-tc-c-accgcc---tccttaaac-ac-
                        Dog  at-c-aaat-ggtatgaaccagtttaagattt-----ct-cc-tc-c-accacc---accttatac-at-
                    Ferret   at-c-aaat-ggtatgaaccagtttaagattt-----ct-cc-tt-c-acctcc---accttatac-at-
                      Panda  at-t-aaat-ggtatgaaccagtttaagatttctc--ct-cc-tc-c-accacc---accttacgc-at-
             Pacific walrus  at-c-aaat-ggtatgaaccagtttaagattt-----ct-cc-tc-c-accacc---accttatac-at-
               Weddell seal  at-c-aaat-ggtatgaaccagtttaagattt-----ct-cc-tc-c-accacc---accttatac-at-
           Black flying-fox  at-c-aaat-ggtatgacacagtttacggttt-----ct-cc-cccc-acccgca--accccttac-a--
                    Megabat  at-c-aaat-ggtatgacacagtttacggttt-----ct-cc-cccc-acccgca--accccttac-a--
              Big brown bat  at-c-aaat-ggtatgaaccaattt---tttt-----ct-tc-ccct-atcccca--atcccatac-a--
       David's myotis (bat)  at-c-taat-ggtatgaaccaattt---gttt-----ct-tc-ccct-accccca--accgcatac-a--
                   Microbat  at-c-taat-ggtatgaatcaattt---gtat-----ct-cc-ccct-gtcccca--accgcatac-a--
                   Hedgehog  agaa-aaat-ggtatgaaccagtttaaggttt-----ct-cc-tc-c----ccc---atcacataa-a--
                      Shrew  at-c-aaat-ggtatgagccattttaaggctt-----ct-cc-tc-c-accctc---tccccatgc-a--
            Star-nosed mole  at-c-aaat-ggtatgaaccgatgtaaggttt-----ct-cc-cc-c-a--ctt---ccgccatac-a--
                   Elephant  at-c-aaat-ggtatgaatcagtttaaggtccc---gcc-cc-cc-c---------------atac-a--
        Cape elephant shrew  at-c-aaat-ggtatgagcctatttaaggtc------ct-cc-tt-c---------------atac-a--
                    Manatee  at-c-aaat-ggtatgaaccagtttaaggtcc-----cc-tc-gc-c---------------atat-g--
           Cape golden mole  at-c-aact-ggtatgaactagtttaagggccccattcc-gc-tc-c---------------atac-a--
                     Tenrec  ag-c-aaat-ggtaagacccagcttcagtttcccaccca-ct-tc-c---------------atgc-a--
                   Aardvark  at-c-aaat-ggtatgaaccagtttaaggtccccc--tt-cc-tc-c---------------atac-a--
                  Armadillo  at-c-aaat-ggtatgaatcggtttaaggttattgccct-cc-cc-c---------------atac-a--
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  tatcacctaattta-tttattatatgtgg---tataa-a-catta
                      Chimp  tatcacctaattta-tttattatacgtgg---tataa-a-catta
                    Gorilla  tatcacctaattta-tttattatatgtgg---tataa-a-catta
                  Orangutan  tgtcacctaattta-tttattatatgtgg---tataa-a-catta
                     Gibbon  tatcacctaattta-tttattatatgtgg---tataa-a-catta
                     Rhesus  tatcatctaattca-tttattatatgtgg---tataa-a-catta
        Crab-eating macaque  tatcatctaattca-tttattatatgtgg---tataa-a-catta
                     Baboon  tatcatctaattca-tttattatatgtgg---tataa-a-catta
               Green monkey  tatcatctaattca-tttattatatgtgg---tataa-a-catta
                   Marmoset  ta---------tca-tttattatatgtgg---taaaa-a-tatta
            Squirrel monkey  tctcacctaattca-tttattatatgtgg---tagaa-a----ta
                   Bushbaby  tatcacctcatttg-tttatcgtatgtgg---taaaa-g-catca
         Chinese tree shrew  tatcgcctaattta-tctatcatatgtgg---taaaa-a-catta
                   Squirrel  tattgcctaatttt-tatatca--tgtgg---caaaa-a-catta
     Lesser Egyptian jerboa  tattcctgaattta-attttcatatgtgg---caaaa-a-tatta
               Prairie vole  tcttgcttagtttg-tttaaaatatgtga---t---t-a-aaaca
            Chinese hamster  tcttgtttaatt------------tgtga---t-aaa-a-aaaca
             Golden hamster  tcttgcttaatt------------tgtga---t--aa-a-aaaca
                      Mouse  tcttgcttaatttg-tttatcatatgtga---taaag-a-catca
                        Rat  tcttgcttaatttg-ttgatcatatgtga---taaaa-a-catca
             Naked mole-rat  tatcacctaattta-tttatcatatgtgg---tcaca-a-cactt
                 Guinea pig  tatcacttaattta-tttatcatctgtgg---taaca-a-cgtta
                 Chinchilla  tatcgcctaatt-t-tttatcatctttgg---gaaca-a-catta
           Brush-tailed rat  tatcacctaattct-tttatcatttgtgg---taata-a-catta
                     Rabbit  tatcacttgatttt-taaatcatgtgtga---taaaa-a-tatta
                       Pika  tatcatataattta-aaaactatatgtag---tataa-a-tatta
                        Pig  tagcgcctaattta-tttaccgtatgtgg---taaaagg-catta
                     Alpaca  tagcacctaattta-tttattatatgtgg---taaaa-g-catta
             Bactrian camel  tagcacctaatttt-tttattatatgtgg---taaaa-g-catta
                    Dolphin  tatcgccta----a-tttatcatatgtgg---t-aaa-g-cgtta
               Killer whale  tatcgccta----a-tttatcatatgtgg---t-aaa-g-cgtta
           Tibetan antelope  tatcgcctcattta-tttatcatatgtgg---taaaa-g-catta
                        Cow  tatcgcctcattta-tttatcatatgtgg---taaaa-g-catta
                      Sheep  tatcgcctcattta-tttatcatatgtgg---taaaa-g-catta
              Domestic goat  tatcgcctcattta-tttatcatatgtgg---taaaa-g-catta
                      Horse  tatcacctaattta-tttatcatatatgg---taaaa-a-catta
           White rhinoceros  tatcacctaattta-tctatcatatatgg---taaaa-a-catta
                        Cat  tatcgcctaattta-tttatcatatgtgg---tgaca-a-catta
                        Dog  tatcacctaattta-tttatcatatgtgg---taaaa-a-catta
                    Ferret   tatcacctaattag-tttatcatatgtgg---taaaa-a-catta
                      Panda  tatcacctaattta-tttaccgtatgtgg---taaaa-a-catta
             Pacific walrus  tatcacctaattta-tttatcatatgtgg---taaaa-a-catta
               Weddell seal  tatcacctaattta-tttatcatatgtgg---taaaa-a-catta
           Black flying-fox  tatcgcctaatttt-tttatcatatgtgg---taaaa-c-catta
                    Megabat  tatcgcctaatttt-tttatcatatgtgg---taaaa-c-catta
              Big brown bat  tattgcctaattta-tttatcatatgtga---tacaa-a-catta
       David's myotis (bat)  tattgcctaattca-tttatcatatgtga---tacaa-a-catta
                   Microbat  tattgcctaattta-tttatcatatgtga---tacaa-a-catta
                   Hedgehog  tattgcccaatgtt-tgtatgatatgtag---taaaa-a-cattc
                      Shrew  tatc----acttta-tttatcacatatgg---t--aa-a-tgtta
            Star-nosed mole  catcgcctacttta-tttatcatatatgg---taaaa-a-cacta
                   Elephant  tatcac---gtttt-ttacttatatgtggttttataa-a-catta
        Cape elephant shrew  ta-------attca-ctaatcatatgtgg-tttataa-a-catta
                    Manatee  tattgcctaattta-cttatcatatgtggttttataa-a-catta
           Cape golden mole  tactgcctaattta-cgtatcatatgtggttttacag-a-taaca
                     Tenrec  tactatctgattca-cttatcata---------------------
                   Aardvark  tattgcctaattta-cttgtcatatgtgcttttatag-a-catta
                  Armadillo  tattgcctaatttattttatcatctgtgattaaaaaa-atcatta
            Tasmanian devil  =============================================
                    Opossum  =============================================
                   Platypus  =============================================
         American alligator  =============================================

Alignment block 12 of 118 in window, 140711732 - 140712102, 371 bps 
B D                   Human  ttttccagcca--------ttg-ttttcctattaa---tttt-----t-----a---------------c
B D                   Chimp  ttttctagcca--------ttg-ttttcctattaa---tttt-----t-----a---------------c
B D                 Gorilla  ttttccagcca--------ttg-ttttcctattaa---tttt-----t-----a---------------c
B D               Orangutan  ttttccagcca--------ttg-ttttcctattaa---tttt-----t-----a---------------c
B D                  Gibbon  ttttccagcca--------ttg-ttttcctattaa---tttt-----t-----a---------------c
B D                  Rhesus  ttttccagcca--------ttg-ttttcctattaa---tttt-----t-----a---------------c
B D     Crab-eating macaque  ttttccagcca--------ttg-ttttcctattaa---tttt-----t-----a---------------c
B D                  Baboon  ttttccagcca--------ttg-ttttcctattaa---tttt-----t-----a---------------c
B D            Green monkey  ttttccagcca--------ttg-ttttcccattaa---tttt-----t-----a---------------c
B D                Marmoset  ttttctagcca--------ttg-tttgcctattga---tttt-----t-----a---------------t
B D         Squirrel monkey  ttttttagcca--------ttg-tttgcctattga---tttt-----t-----a---------------t
B D                Bushbaby  ttttccagttg--------ttg-tttgcccattga---tttc-----t-----g---------------t
         Chinese tree shrew  ttttccagttg--------tct-tttgcctgttga--ttttt-----t-----a---------------c
B D                Squirrel  ttttccagtca--------ttg-tttgttcattga---tttc-----t-----a---------------t
     Lesser Egyptian jerboa  ttttccagtca--------ctg-tttccattttta---tttc-----t-----a---------------t
               Prairie vole  ctctcaagtca--------tta-tttgcatatata---gttt-----t-----g---------------t
B D         Chinese hamster  ttttaaagtaa--------tta-tcaacctattta---gctt-----t-----g---------------t
             Golden hamster  ttttaaagtat--------tta-tcaacctattta---gttt-----t-----g---------------t
B D                   Mouse  ttttcaagtca--------tta-tttgattattta---gttt-----t-----g---------------t
B D                     Rat  ttttcaagtca--------tta-tttgactattta---gttt-----t-----g---------------t
B D          Naked mole-rat  ttttctagtca--------ttg-tttgcctgttga---tttt-----c-----a---------------t
B D              Guinea pig  ttttctagtca--------ttg-tttgcctattga---tttt-----c-----a---------------t
                 Chinchilla  ttttctaatca--------tta-cttgcctattga---tgtt-----c-----a---------------t
           Brush-tailed rat  ttttctaatca--------ttg-ttcacctctcta---tttt-----c-----a---------------t
B D                  Rabbit  tgttccag-----------ctg-tttgcctattgg---ttgt-----t-----t---------------t
B D                    Pika  ttttgcag-----------ttg-attgcttattga---gtgg-----t-----t---------------t
B D                     Pig  ttttccagttg--------tgt-tttgcctattcg--tgttt-----t-----a---------------t
B D                  Alpaca  ttttccagttg--------ttt-tttgcctattcatttattt-----t-----a---------------t
             Bactrian camel  ttttccagttg--------ttt-tttgcctattcatttattt-----t-----a---------------t
B D                 Dolphin  tttttcagttg--------tttttttgcctattca-tttttt-----t-----a---------------t
               Killer whale  tttttcagttg--------tttttttgcctattca-tttttt-----t-----a---------------t
           Tibetan antelope  ttttcca---g--------tttatttgcctattta--tgttt-----t-----a---------------t
B D                     Cow  tttttca---g--------tttatttgcctatttc--tgttt-----t-----a---------------t
B D                   Sheep  ttttcca---g--------tttatttgcctattta--tgttt-----t-----a---------------t
              Domestic goat  ttttcca---g--------tttatttgcctattta--tgttt-----t-----a---------------t
B D                   Horse  ttttccggttg--------tcg-tttgcctactga--ttttt-----t-----t---------------t
B D        White rhinoceros  ttttccagttg--------ttg-tttgcctatttg--ttttt-----t-----t---------------t
B D                     Cat  tttcccagttg--------ttg-tttgcctattga--ttttg-----t-----a---------------c
B D                     Dog  tttcccagttg--------ttg-tttgcctattga--ttttg-----t-----a---------------c
B D                 Ferret   tttcccagttg--------ttg-tttgcctattga--ttttg-----t-----a---------------t
B D                   Panda  tttcccagttg--------ttg-tttgcctattga--ttttg-----t-----a---------------t
             Pacific walrus  tttccca---g--------tgg-tttgcctattca--ttttg-----t-----a---------------t
               Weddell seal  tttccca---g--------tgg-tttgcctattga--ttttg-----t-----a---------------t
           Black flying-fox  tatcccagttg--------tta-tttgcctgttga--ttttt-----tttttaa---------------t
B D                 Megabat  tatcccagttg--------tta-tttgcctgttga--ttttt-----ttttaaa---------------t
              Big brown bat  ttttccagttgttgtttttttt-tttgcctgttga--ttttt-----tt----a---------------t
       David's myotis (bat)  ttttccagttg-------tttt-tttgcctgttga--ctttt-----tt----a---------------t
B D                Microbat  ttttccagttg-------tttt-tttgcctgttga--ctttt-----tt----a---------------t
B D                Hedgehog  ttttctgattc--------ctg-tttgcacattga--tc-tt-----c-----a---------------t
B D                   Shrew  ttttccagttc--------tca-tttgact--taa--ttgtt-----t-----a---------------t
            Star-nosed mole  tctcctggttc--------ctg-tcttcctactgg--tttct-----t-----t---------------t
        Cape elephant shrew  cttctcatttg--------cta-tttgtctattgt---tttc--tt-c-----atcctgtatactgagtt
B D                 Manatee  tttctcagttg-------------ttgtctattgc---tttt--tt-t-----a----------aaaaat
           Cape golden mole  ttttccaactg--------ttg-tttgtctattgc---tatt--gt-t-----t----------taaaat
B D                  Tenrec  ------aatag--------ttg-tttgtctattgc---ttttcagtgt-----g----------tatgct
                   Aardvark  tttctcagtta--------ttg-tttgtctattgc---tttt-----t-----a-----------aaaat
B D               Armadillo  tttcccactgg--------ttg-tttgatttttat---catt-----t-----a---------------t
B D                Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D                Platypus  ======================================================================
B D      American alligator  ======================================================================

                      Human  c-------atttatggtg-----------gtg------------a----------tttttt---gatatt
                      Chimp  c-------atttatggtg-----------gtg------------at---------tttttt---gatatt
                    Gorilla  c-------atttatggtg-----------gtg------------a----------tttttt---gatatt
                  Orangutan  c-------atttatggtg-----------gtg------------at---------tttttt---gatatt
                     Gibbon  c-------acttatggtg-----------gtg------------t----------tttttt---gatatt
                     Rhesus  c-------atttatggtg-----------gtg------------at---------tttttt---gatatt
        Crab-eating macaque  c-------atttatggtg-----------gtg------------at---------tttttt---gatatt
                     Baboon  c-------atttatggtg-----------gtg------------at---------tttttt---gatatt
               Green monkey  c-------atttatggtg-----------gtg------------at---------tttttt---gatatt
                   Marmoset  c-------atttatagtt-----------gtg------------a----------tttttt---aatatg
            Squirrel monkey  c-------atttatagtt-----------gtg------------a-----------ttttt---aatatg
                   Bushbaby  c-------atttatggtg-----------gtg------------ac---------attttt---gacatt
         Chinese tree shrew  c-------atttatggtataatagttattttg------------tt---------gttttt---tacatt
                   Squirrel  c-------atttattgtg-----------gtt------------gt---------ttttgg-----catt
     Lesser Egyptian jerboa  c-------att-----tg-----------atg------------tt---------tttgg------catt
               Prairie vole  c-------acttataatg-----------gca------------at---------tttggg---gacaca
            Chinese hamster  c-------acttatggtg-----------gtg------------at---------tttggg---gacact
             Golden hamster  c-------acgtatgatg-----------gtg------------at---------tttggg---tatact
                      Mouse  c-------acctatgata-----------ctg------------at---------tttggg---agcatt
                        Rat  c-------acttattata-----------ctg------------at---------tttggg---agcatt
             Naked mole-rat  c-------attgatggtg-----------gtg------------at---------gatttt---ggcgtt
                 Guinea pig  c-------attgatggtg-----------gtg------------at---------gtttgg---agcatt
                 Chinchilla  c-------attgatggtg-----------gtg------------at---------gttttg---ggcatt
           Brush-tailed rat  c-------gtggatggta-----------gtg------------at---------gttttg---ggcatt
                     Rabbit  t-------acttatggtg-----------atg------------tt---------ttgttt---tatatt
                       Pika  c-------acttatgatt-----------gtgt-----------tt---------ttgttt---tgtgct
                        Pig  c-------atttatggtg-----------ggt------------tt---------tcctaa---gacatg
                     Alpaca  c-------atttatggtg-----------ggt------------tt---------tcttaa----acatg
             Bactrian camel  c-------atttatggtg-----------ggt------------tt---------tcttaa----acatg
                    Dolphin  c-------atttatggtg-----------ggt------------tt---------tcttaa----acaaa
               Killer whale  c-------atttatggtg-----------ggt------------tt---------tcttaa----acaaa
           Tibetan antelope  c-------atttatggtg-----------agt------------tt---------tcttaa----acgtg
                        Cow  c-------atttatggtg-----------agt------------tt---------tcttaa----acgtg
                      Sheep  c-------atttatggtg-----------agt------------tt---------tcttaa----acgtg
              Domestic goat  c-------atttatggtg-----------agt------------tt---------tcttaa----acgtg
                      Horse  tttttatcatttatggtg-----------ggg------------tt---------tttttttttaacatg
           White rhinoceros  ttt-----atttatgatg-----------ggt------------tt---------tttttt----acatg
                        Cat  c-------attcatgcag-----------cttt-----------tt---------ttttttctccccatg
                        Dog  c-------atttatgctg-----------gg------------------------ttttttttttacatg
                    Ferret   c-------atttatgctg-----------gggtc----------tt---------ttttttttttacatg
                      Panda  c-------atttatgctg-----------ggttg----------tt---------ttttttttttacatg
             Pacific walrus  c-------atttatgctg-----------gg-------------tt---------ttttttttttacacg
               Weddell seal  c-------atttatgctg-----------ggt------------tt---------ttttttttttacatg
           Black flying-fox  c-------atttttggtg-----------ggg------------tt---------attttt----acacg
                    Megabat  c-------atttttggtg-----------ggg------------tt---------attttt----acacg
              Big brown bat  a-------atttatggtg-----------ggt------------tt---------attttt----acatg
       David's myotis (bat)  c-------atttatggtg-----------ggc------------tt---------attttt----acatg
                   Microbat  c-------atttatggtg-----------ggt------------tt---------attttt----acgtg
                   Hedgehog  t-------gtctatggtg-----------ggttgttttggcttatt---------tttttt---aacatg
                      Shrew  c-------atttttggtg-----------gagtgc---------tt---------tctttt-----catt
            Star-nosed mole  c-------atttctggtg-----------ggttg-------------------------tt-----taaa
        Cape elephant shrew  t-------gattgc--tt-----------tgt------------ttgtctgagggtctttt---tatgtc
                    Manatee  c-------atttat--gg-----------tgt------------tt---------tttttt---tacatt
           Cape golden mole  t-------gtgta----------------ggt------------ct---------gttttc---tacatt
                     Tenrec  t-------atgcg----------------ggt------------tt---------ttgggt---gacatt
                   Aardvark  c-------attta----------------tgt------------tt---------tttttt---ttgat-
                  Armadillo  c-------gtgtgc--tt-----------ttt------------tt---------tttttt---gacatt
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ttacagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aag-tgttgtga-tttttt
                      Chimp  ttacagt-tttaca--tgttagatttcc----atatctgaccatc---tt-aag-tgttgtga-tttttt
                    Gorilla  ttacagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aag-tgttgtga-tttttt
                  Orangutan  ttacagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aag-tgttgtga-tttttt
                     Gibbon  ttacagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aag-tgtcgtga-tttttt
                     Rhesus  tcacagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aag-tgttgtga-tttttt
        Crab-eating macaque  tcacagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aag-tgttgtga-tttttt
                     Baboon  ttacagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aaa-tgttgtga-tttttt
               Green monkey  ttacagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aag-tgttgtgattttttt
                   Marmoset  ttatagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aag-tgttgtgattttttt
            Squirrel monkey  ttatagt-tttaca--tgttagatttcc----atatctgaccatt---tt-aag-tgttgtga-tttttt
                   Bushbaby  ttgcagc-tttgcc-tttttaaatattc----acatctg-caact---tt-gga-ttttgtga-tttgtt
         Chinese tree shrew  ttgcagc-tttaca-ctttcacattgacaattacatctgtcaatt---tt-aa--ttttgtga-tttgtt
                   Squirrel  ttgcagcttttatg-gttttagatttct----acatctgtcaatt---gt-tga-tttggtga-gttgtt
     Lesser Egyptian jerboa  tcacagc-tttgta-cttttatatatct----acatctgtcaattgacga-t---ttttgt---------
               Prairie vole  ttactgc-cttatc-tttt-aaatacct----ctgcccgtcagtt---ta-t---ttttatgt-tttctt
            Chinese hamster  ttaatgc-tttata-ttttaaaatgcct----acatctgtcagtt---ta-t---ttttgtgt-tttctt
             Golden hamster  ttactgc-tttata-ttttaaaatacct----acatctatcagtt---ta-t---ttttgtgt-tttctt
                      Mouse  ttattgc-ctttta-ttttaaaatatct----acatctgtcggtt---ga-t---ttttgtgt-tttct-
                        Rat  ttactgc-tttata-ttttaaaatatct----acatctgtcagtt---ga-t---ttttgtgt-tttct-
             Naked mole-rat  ttgcagc-tttata-tttttagatatct----acatctgtcagct---at-tga-ttttgtga-aatttt
                 Guinea pig  tggaagc-tttata-tttttagatatct----acatctatcagct---gt-tga-ttttgtga-tttttt
                 Chinchilla  ttgaagc-tttata-tttttagatatct----acatatgtcagct---gt-tga-ttttgtga-tttttt
           Brush-tailed rat  ttgatgc-tttata-tttttagatatct----acatctgtcagct---gt-tga-ttttggga-tttctt
                     Rabbit  ttgcagt-tttata-tttttaactatca----acatctgtcaatt---tt-tga-tattgtga-t-----
                       Pika  ttgtagt-tttgta-ttttgaaatatcc----aca--tgtcaatt---tt-tga-ttttatga-t-----
                        Pig  ttgcagc-tttacg-tttttagatatcc----acaactatcaatt---tt-tga-tttcgtga-tttctt
                     Alpaca  ttgcagc-tttaca-tttttagatatcc----acaactatcactt---tt-tga-ttttgtga-tttctt
             Bactrian camel  gtgcagc-tttaca-tttttagatatcc----acaactatcactt---tt-tga-ttttgtga-tttctt
                    Dolphin  ttgcagc-tttaca-tttttagatatcc----acaactataaatt---tt-tga-ttttgtga-tttctt
               Killer whale  ttgcagc-tttaca-tttttagatatcc----acaactataaatt---tt-tga-ttttgtga-tttctt
           Tibetan antelope  ttgtagc-tttaca-tttttagacatcc----ataactatcaagt---tt-tga-ttttgtga-tttctt
                        Cow  ttgcagc-tttaca-tttttagacgt-c----ataactatcaagt---tt-tga-ttttgtga-tgtctt
                      Sheep  ttgtagc-tttaca-tttttagacatcc----ataactatcaagt---tt-tga-ttttgtga-tttctt
              Domestic goat  ttgtagc-tttaca-tttttagacatcc----ataagtatcaagt---tt-tga-ttttgtga-tttctt
                      Horse  ttgtaga-tttgta-tttttagatatct----acagctatcaatt---tt-tgg-ttttgtga-----ct
           White rhinoceros  ttgcagc-tttata-tttttaggtatct----acagctatcaatt---tt-tga-tttcatga-tttctt
                        Cat  ttgcggc-cttata-gttttagatatcc----acagctatcaatt---ttctga-tttgggga-tttatt
                        Dog  atgcagc-tttaca-tttttagatatcc----tcagctatcagtt---tt-tga-ttttatga-tttatt
                    Ferret   ttacagc-tttata-tttttagatatct----gtagctatcaatt---tt-tga-ttttatga-tttatt
                      Panda  tcacagc-tttaca-tttttagatagcc----acggttatcgatt---tt-tga-ttttataa-tttatt
             Pacific walrus  ttgcagc-tttaca-tttttagatatcc----acagctatcaatt---tt-tga-ttttatga-tttatt
               Weddell seal  ttgcagc-tttaca-tttttagatatcc----acagctatcaatt---tt-tga-ctttatga-tttatt
           Black flying-fox  tcgcagc-tttaca-tttttaaatatcc----acaactatcaatt---tt-tga-tttcgtga-ttta-c
                    Megabat  tcgcagc-tttaca-tttttaaatatcc----acaactatcaatt---tt-tga-tttcgtga-ttta-c
              Big brown bat  tcacaca-tgtaca-tttttaattatcc----acaactagtaaat---gt-tgg-ttttgtga-ttta-t
       David's myotis (bat)  tcattgg-tgtaca-tttttaattattc----acaactagtaaat---gt-tggtttttgtga-ttta-t
                   Microbat  tcattgg-tgtaca-tttttaaatattc----acaactagtaaat---gt-tggtttttgtga-ttta-t
                   Hedgehog  ttgctgc-ttgaca-ttttcagatatcc----acaggtatcagtt---tt-tga-ttatatga-tctgtt
                      Shrew  ttgcagc-tttgca-ttttcagatatcc----acaggtattaatt---tt-gga-ttctgtga-tttctt
            Star-nosed mole  acgtagc-tttaca-tttatagatatcc----acagccatcaatt---tt-tga-tt-tgtga-tttctt
        Cape elephant shrew  tttcagg-tttata-ttttcagatatcc----acaactatcaatt---ct-tga-ttctgtcc-tttgtt
                    Manatee  tttcagg-tttatg-tttttagatatcc----acaactatcactt---tt-tga-ttttgtca-tttgtt
           Cape golden mole  gtacagt-tttaca-cctttagatgttc----gcaactgtcaggt---tt-tga-ttttgtca-tttgtt
                     Tenrec  ttgcagt-tgtaca-tgtttagatcttc----acacctatcagtt---gt-tga------tca-tttgtc
                   Aardvark  -----at-tttata-actttgcacatct----acaactatcaagt---tt-tga-ttttgtca-tttgtt
                  Armadillo  ttgcagc-tttacattttttaggtatct----gcatctcttaatt---tt-tga-ttttgtga-tt----
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  tctt-tcctttgattagtgt----------------------attcac---ctgta-----t--t-----
                      Chimp  tctt-tcctttgattagtgt----------------------attcac---ctgta-----t--t-----
                    Gorilla  tctt-tcctttgattagtgt----------------------attcac---ctgta-----t--t-----
                  Orangutan  tctt-tcctttgattagtgt----------------------attcac---ctgta---t-t--t-----
                     Gibbon  tctt-tcctttgattagtgt----------------------attcac---ctgta-----t--t-----
                     Rhesus  tctt-tcctttgattagtgt----------------------attcac---ctgta--------t-----
        Crab-eating macaque  tctt-tcctttgattagtgt----------------------attcac---ctgta--------t-----
                     Baboon  tctt-tcctttgattagtgt----------------------attcac---ctgta--------t-----
               Green monkey  tctt-tcctttgattagtgt----------------------attcac---ctgta--------t-----
                   Marmoset  tctt-tcctttgattagtgt----------------------attcac---ctgta--------t-----
            Squirrel monkey  tctt-tcctttgattagtgt----------------------attcac---ctgta--------t-----
                   Bushbaby  t------ctttgataagcat----------------------attcac---ctgca-----t--t-----
         Chinese tree shrew  tctt-tcttttggcaagcat----------------------acgcac---ctata---tat--t-----
                   Squirrel  t----cctgtgaagcattca-------cctgtatacgt----atctac---ctgta----ct--t-----
     Lesser Egyptian jerboa  -----ggcttgaagtattctgtgcatatatgtatatat----aattac---ctgta--------t-----
               Prairie vole  tct--tttttgaggtattcc-------tccacataaac----attcac---ctgta--------t-----
            Chinese hamster  tct--tttttaaggtattcc-------tccatatatac----attcac---ctgta--------t-----
             Golden hamster  tc---tttttaaggtattcc-------tccatataaac----attcat---ctgta--------t-----
                      Mouse  -----tttttagggtatttc-------tccacatatat----attcac---ctgta--------t-----
                        Rat  -----tttttagggtattcc-------tccacatatac----attcac---ctgta--------t-----
             Naked mole-rat  tt---cctttaaaatattta-------cctgtatatgggaatattcac---ctgta--------t-----
                 Guinea pig  tttt-ccttttaagtattta-------tttatatacgg----atacac---ctgta--------t-----
                 Chinchilla  t----cctttgaaatattta-------cctatatacgg----attcat---ctgta--------t-----
           Brush-tailed rat  tttccccttggaagtaatta-------actatat--gg----attcac---ctgta--------c-----
                     Rabbit  -----ctgtttatttgctct-------gctgagcat------agtcacatgttttt--------t-----
                       Pika  -----tcgttcatatgcttt-------gctgagaat------attcac-----cct--------g-----
                        Pig  tctt-tcttccgatgaatat----------------------attcac---ctgca--------t-----
                     Alpaca  tctt-tt----gatgagtat----------------------attcac---ctgta--tttt--t-----
             Bactrian camel  tctt-tt----gatgagtat----------------------attcac---ctgtatttttt--t-----
                    Dolphin  tctt-tcttttgaggagtat----------------------gttcac---atgca--------t-----
               Killer whale  tctt-tcttttgaggagtat----------------------gttcac---atgca--------t-----
           Tibetan antelope  tctt-tt-----atgaatat----------------------attcac---ctgca--------t-----
                        Cow  tctt-tt-----atgagtgt----------------------attcac---ctgca--------t-----
                      Sheep  tctt-tt-----atgagtat----------------------attcac---ctgca--------t-----
              Domestic goat  tctt-tt-----atgagtat----------------------attcac---ctgca--------t-----
                      Horse  tgtt-tcctttgatgagtat----------------------atttac---ctgta---ttt--t-----
           White rhinoceros  tctt-tcctttgatgagtat----------------------attcac---ctgta---ttt--t-----
                        Cat  tctt-ttcattgatgagtac----------------------actcac---ctgcc-----t--t-----
                        Dog  tctt-tcctttgatgagtat----------------------attgac---ctgta--------t-----
                    Ferret   tctt-tcctttagtgagtat----------------------attgac---ttgta--------t-----
                      Panda  tctt-tcctttgatgagtat----------------------attgac---ctgta----tt--t-----
             Pacific walrus  tctt-tccttggatgagtat----------------------attggc---ctgta-----t--t-----
               Weddell seal  tctt-tcctttgatgagtat----------------------attgac---ctgta-----t--t-----
           Black flying-fox  tttt-tcctttgatgagtat----------------------attcac---ctgta----gt--t-----
                    Megabat  tttt-tcctttgatgagtat----------------------attcac---ctgta----gt--t-----
              Big brown bat  tctt-ttctttgatgagtat----------------------attcac---ctgta-----t--t-----
       David's myotis (bat)  tctt-tcatttgatgagtat----------------------attcac---ctgta-----t--t-----
                   Microbat  tctt-tcgtttgatgagtat----------------------attcac---ctgta-----t--t-----
                   Hedgehog  tc------tttgacaagtat----------------------atctct---ctgca--------t-----
                      Shrew  tct-----tttgatgaatat----------------------gttcac---ctgta--------tatata
            Star-nosed mole  tctt-tcctttgctgagtct----------------------gttcac---ctgta--------t-----
        Cape elephant shrew  tctt-tcctttggtaagcat----------------------attcac---ctgta----tttat-----
                    Manatee  tctt-tcctttgatgagcat----------------------attcat---ctgta----tt--t-----
           Cape golden mole  tctt-tcttttgatgaacat----------------------tttcac---ctgta----at--t-----
                     Tenrec  tgtc-tccttccacgagcat----------------------attcac----------------------
                   Aardvark  tgtt-tcctttgacgagtgt----------------------attcac---ccgta----tt--t-----
                  Armadillo  tctt-tcctttgatgagcat----------------------atacat----------------t-----
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ----tt--tttc-tag-----------------ttattt-aattgc--ttca---ttt----ttt-----
                      Chimp  ----tt--tttc-tag-----------------ttattt-aattgc--ttca---ttt----ttt-----
                    Gorilla  ----tt--tttc-tag-----------------ttattt-aattgc--ttca---ttt----ttt-----
                  Orangutan  ----tt--tttc-tag-----------------ttattt-aattgc--ttca---ttt----ttt-----
                     Gibbon  ----tt--tttc-tag-----------------ttattt-aattgc--ttca---ttt----ttt-----
                     Rhesus  ----tt--tttc-tag-----------------ttattt-aattgc--ttca--tttt----ttt-----
        Crab-eating macaque  ----tt--tttc-tag-----------------ttattt-aattgc--ttct--tttt----ttt-----
                     Baboon  ----tt--tttc-tag-----------------ttattt-aattgc--ttca--tttt----ttt-----
               Green monkey  ----tt--tttc-tag-----------------ttattt-aattgc--ttca--tttt----ttt-----
                   Marmoset  ----tt--ttcc-tag-----------------ttattt-aattgc--ttca---ttt----ttt-----
            Squirrel monkey  ----tt--ttcc-taa-----------------ttattt-aattgc--ttca---ttt----ttt-----
                   Bushbaby  ----tt--tttc-caa-----------------tcatgt-aattgc--ttca---ttt----ttt-----
         Chinese tree shrew  ----tt--ctct-tag-----------------tcattt-aattgc--ttca---ctt----ttt-----
                   Squirrel  ----tt--cccc-tag-----------------taactc-aatttc--ttca---tgt----ttt-----
     Lesser Egyptian jerboa  ----tt--ttcc-tag-----------------taactt-aattcc--ttta---ttt-----tt-----
               Prairie vole  ----tt--tctc-tgg-----------------aaattt-aattaa--ttaa---ttt--ctttt-----
            Chinese hamster  ----tt--tctc-tag-----------------aaattt-aattga--ttcc---ttt--ctttt-----
             Golden hamster  ----tt--tctc-tag-----------------acattt-aattaa--ttca---tt----tttt-----
                      Mouse  ----tt--tctc-tag-----------------aaattt-aatcaa--ttta---tttttttttt-----
                        Rat  ----tt--tttc-tag-----------------aaattt-attta-----------tttattttt-----
             Naked mole-rat  ----tt--tcccctag-----------------tgattt-cactcc--ttca---ttt------------
                 Guinea pig  ----tt--tcccttag-----------------gaactt-cattcc--ttca---ttt------------
                 Chinchilla  ----tt--ccccccac-----------------taacgt-cattct--ttca---ttt------------
           Brush-tailed rat  ----gt--tcccccag-----------------ttctttccattcc--ttca---ttt------------
                     Rabbit  ----tt--tctc-tag-----------------tcatgt-aattgt--ttca---ttt----ttt-----
                       Pika  ----tt--ttcc-tag-----------------tcactt-aattgt--ttcg---ttt----ttt-----
                        Pig  ----ttt-ctcc-tcg-----------------tcattt-cattgc--ttca---ttt----ttt-----
                     Alpaca  ----tt--ttca-tag-----------------ccattt-cattgc--ttca---ttt----tta-----
             Bactrian camel  ----tt--ttca-tag-----------------ccattt-cattgc--ttca---ttt----tta-----
                    Dolphin  ----tttcttcc-tag-----------------tcattt-cattgc--ttcg---ttt----ttt-----
               Killer whale  ----tttcttcc-tag-----------------tcattt-cattgc--ttcg---ttt----ttt-----
           Tibetan antelope  ----tt--ttcc-tag-----------------tcattt-acttgt--ttca---ttc----ttt-----
                        Cow  ----tt--ttcc-tag-----------------tcattt-acttgt--ttca---ttc----ttt-----
                      Sheep  ----tt--ttcc-tag-----------------tcattt-acctgt--ttca---ttc----ttt-----
              Domestic goat  ----tt--ttcc-tag-----------------tcattt-acctgt--ttca---ttc----ttt-----
                      Horse  ----tt--ttat-tag-----------------tcattt-ctttgc--ttca---ttt----ttt-----
           White rhinoceros  ----tt--ttct-tag-----------------tcattt-ctttgc--ttca---ttt----ttt-----
                        Cat  ----gt--tttc-c---------------------attc-cgttgc--ttca---ttt----ttt-----
                        Dog  ----tt--tttc-tag-----------------ttattt-cattgc--ttca-ttttt----ttt-----
                    Ferret   ----tt--tttc-tag-----------------ttattt-cattgc--ttca--tttt----ttt-----
                      Panda  ----tt--tttc-tag-----------------ttattt-tattgc--ttca---ttt----ttt-----
             Pacific walrus  ----tt--tttc-tag-----------------ttattt-cattgc--ttca---ttt----ttt-----
               Weddell seal  ----tt--tttt-cag-----------------ttattt-cattgc--ttca---ttt----ttt-----
           Black flying-fox  ----tt--cccc-tag-----------------tcattt-catcgc--ttcatttttt----ttt-----
                    Megabat  ----tt--cccc-tag-----------------tcattt-catcgc--ttca-ttttt----ttt-----
              Big brown bat  ----tt--tcac-tag-----------------tcattt-cattgt--ttca---ttt----tct-----
       David's myotis (bat)  ----tt--tccc-tag-----------------tcattt-aattgt--ttca---ttt----tct-----
                   Microbat  ----tt--tccc-tag-----------------tcattt-aattgt--ttca---ttt----tct-----
                   Hedgehog  ----tt--ttac-tgg-----------------tcattt-cattattttaca---ttt----ttcttatg
                      Shrew  tatttt--ttta-taaaaaaagtttcactgttttcattt-cattgcctttcc---ttt----ttc-----
            Star-nosed mole  --tttt--ttcc-tag-----------------tcattt-cattgc--ttta---ttt----ttt-----
        Cape elephant shrew  ----tt--tccc-tag-----------------tcattt-tattgt--ttaa---ctt----tgg-----
                    Manatee  ----tt--ttcc-tag-----------------tcattt-cattgt--ttaa---ttt----ttg-----
           Cape golden mole  ----tt--ttcc-tag-----------------tcattt-cagtgt--ttga---ttt----ttg-----
                     Tenrec  --------------------------------------------gt--ttg----ttt----tgg-----
                   Aardvark  ----tt--ttcc-tag-----------------tcattt-aattgt--ttca---ttt----ttg-----
                  Armadillo  ----tt--tccc-taa-----------------tcattt-cattac--ttta--tttt----ttt-----
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  -----acaattaactcctt---aatccacctagaattcattt----t-g-atatatggta------taca
                      Chimp  -----acaattaactcttt---aatccacctagaattcattt----t-g-atatatggta------taca
                    Gorilla  -----acaattaactcttt---aatccacctagaattcattt----t-g-atacatggta------taca
                  Orangutan  -----acaattaactcttt---aatccacctagaattcattt----t-g-atatatggta------taca
                     Gibbon  -----acaattaactcttt---aatccacctagaattcattt----t-g-atatatggta------taca
                     Rhesus  -----acaattaactcttt---aatccacctagaattcattt----t-g-atatatggta------taca
        Crab-eating macaque  -----acaattaactcttt---aatccacctagaattcattt----t-a-atatatggta------taca
                     Baboon  -----acaattaactcttt---aatccacctagaattcattt----t-g-atatatggta------taca
               Green monkey  -----acaattaactcttt---aatccacctagaattcattt----t-g-atatatggta------taca
                   Marmoset  -----acagttaactcttt---aatcctcctataattcattt----t-g-atttatgata------taca
            Squirrel monkey  -----acagctaactcttt---aatcctcctataattcattt----t-g-atttgtggta------taca
                   Bushbaby  -----acaattaactactt---a-----tctagaattcattt----t-g-gtagatgata------taag
         Chinese tree shrew  -----acaatgaactctcc---aatccttctagatttcattt----t-g-gaatatggca------taaa
                   Squirrel  -----acaatcaagtcttt---aatccatctgtaattcattt----t-g-ataaatggta------taaa
     Lesser Egyptian jerboa  -----gcaattaactcttt---gacccagctagaactcattt----t-g-atgtatacta------taaa
               Prairie vole  -----acaattaactctgt---aatctgtatagtattcattt----taa-atgtgtagta------taaa
            Chinese hamster  -----ataattaactctgt---aatctgcatagtgtttgttt----taa-atgtatgaca------taa-
             Golden hamster  -----ataattaactctgc---aatctgtaaagcatttattt----taa-atgtctgata------taa-
                      Mouse  -----acaattaactctga---aatttgtatagaattcattt----taa-atgtatggta------taaa
                        Rat  -----ataattaaccctgc---aatttgtatagaattaattt----aaa-atgtatggta------taaa
             Naked mole-rat  -----gcaattaatttctt---aatccatctaaaattgattt----t-g-atgtgtgatg------caaa
                 Guinea pig  -----gtaattgacctctt---aatccatctaaaattgattgtgcat-g-gtgtgtggtg------caaa
                 Chinchilla  -----gtaattgatttctt---aatgcagctaaaattgattt----t-g-atgtgtgatg------caaa
           Brush-tailed rat  -----gtaattgattgcat---aatccatctaaagttgattt----t-g-atgtgtgatg------caaa
                     Rabbit  -----acagttaactcttg---aatctatttagcattaattt----t-g-gtatatggta------taaa
                       Pika  -----aaaatgaactcttatttaatctatttagaagtcactt----t-g-atgtttagta------taaa
                        Pig  -----gcaatgaactcc-----aattcacctagaattcattt----t-g-gcctacggta------tgaa
                     Alpaca  -----ccaattaactct-----aaatcatctggatttcgttt----c-g-gcatatggca------tgaa
             Bactrian camel  -----ccaattaactct-----aaatcatctggatttcgttt----c-g-gcatatggca------tgaa
                    Dolphin  -----acaattaactca-----aattcatttaaaattcattt----t-g-gcatatggta------tgaa
               Killer whale  -----acaattaactca-----aattcatctaaaattcattt----t-g-gcatatggta------tgaa
           Tibetan antelope  -----gcaattaactct-----aattcatctagaattcattt----t-g-gcatatgata------tgaa
                        Cow  -----gcaattaactct-----aattcatctagaattcattt----t-g-gcatatgata------tgaa
                      Sheep  -----gcaattaactct-----aattcatccagaattcattt----t-g-gcatatgata------tgaa
              Domestic goat  -----gcaattaactct-----aattcatctagaattcattt----t-g-gcatatgata------tgaa
                      Horse  -----acaattaactct-----aa-ccatctggaattcattt----t-g-gtatatggta------tgaa
           White rhinoceros  -----acaattaactct-----aattcatctgaaattcattt----t-g-gtatatggta------tgaa
                        Cat  -----acagttaactct-----gattcatctggaattcattt----t-g-gtgtatggtatgaatttgaa
                        Dog  -----atgattaactct-----gattcatctggaattcattt----t-g-gtatatggtatgaatatgaa
                    Ferret   -----tttactaactct-----aattcatctggaattcattt----t-g-gtatgtggtatgaatatgaa
                      Panda  -----acaattaactct-----aattcatctggaattgattt----t-g-ttatgtggtatgaatatgaa
             Pacific walrus  -----acaattaactct-----gattcatctggaattcattt----t-g-gtatgtggtatgaatatgaa
               Weddell seal  -----acaaataactct-----gattcatctggaattcattt----t-g-gtatgtggtatgaatatgaa
           Black flying-fox  -----acaattaactct-----ag-tcatctggaattccttt----t-g-gtatatggtg------tgaa
                    Megabat  -----acaattaactct-----ag-tcatctggaattccttt----t-g-gtatatggtg------tgaa
              Big brown bat  -----acaattaacttt-----aa-tcatctggaatttattt----t-g-gtatatgttc------agaa
       David's myotis (bat)  -----acaa-----ttt-----aa-ttatct-gaatttattt----t-g-gtatatgttt------ggaa
                   Microbat  -----acaattaacttt-----aa-ttatct-gaatttattt----t-g-gtatatgttt------ggaa
                   Hedgehog  ttcttgcaattcaattc-----aatccatataatatt-agtt----g-g-gtatattgtc------tgaa
                      Shrew  -----acaattaactta-----aattcatctggaattaattt----g-a-gcatgtggta------tgaa
            Star-nosed mole  -----atagttaactct-----aactcatctggaattcattt----t-g-gtatatggta------tgaa
        Cape elephant shrew  -----gccattgactctgt---aatgcacttttaattcatta----t-g-gtatataata------tgat
                    Manatee  -----acaattagctgttt---aatccatctggaattcattt----t-g-gtttatggta------tgaa
           Cape golden mole  -----gcaattaacttttt---aatccatatggaattcattt----t-gaatttattgtc------tgaa
                     Tenrec  -----ataattaactcttt---aaggcatctggaattcactt----t-g-ctgtatggta------tgaa
                   Aardvark  -----aaaattaactcttt---catccctctcaaatgccttt----t-g-gtatatggta------tgaa
                  Armadillo  -----acgattatctcctt---aatccatccagcatctattt----t-g-gtatatggta------tgaa
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  gtaggatttaa------------------ttt--t------------tt----ttccccctaataggtca
                      Chimp  gtaggatttaa-------------------tt--t------------tt----ttaaacctaataggtca
                    Gorilla  gtaggatttaa------------------ttt--t------------tt----ttccccctaataggtca
                  Orangutan  gtaggatttaa------------------ttt--t------------tt----tcccccctaataggtca
                     Gibbon  gtaggatttaa------------------ttt--t------------tt----ttccccctaataggtca
                     Rhesus  gtaggattaaa------------------ttt--t------------tt----ttccccctaataggtca
        Crab-eating macaque  gtaggattaaa------------------ttt--t------------tt----ttccccctaataggtca
                     Baboon  gtaggattaaa------------------ttt--t------------tt----ttccccctaataggtca
               Green monkey  gtaggattaaa------------------ttt--t------------tt----ttccccc-aataggtca
                   Marmoset  gaaggaattaa------------------tgt--g------------tt----tt-cccctaataggtca
            Squirrel monkey  gaaggaattaa------------------tgt--g------------tt----tt-cccctaataagtca
                   Bushbaby  gtaagatctaa-----ttttgttttttgtttt--t------------tt----tttttccaaataggtca
         Chinese tree shrew  gtggaatctaa------------------ttttgt------------gt----tttttccaaataggtca
                   Squirrel  gtagggtctaa------------------ttt--tg--------t--tt----cttttccaaataggtcg
     Lesser Egyptian jerboa  gtaggatcatt------------------ttt--tg--------t--gtgttttttccccaaatagatca
               Prairie vole  atagaatctaa------------------ttt--tg--------t--gc----cttttccagataggttg
            Chinese hamster  ----gatctaa------------------tta--tg--------t--gt----tttttccaaataggtca
             Golden hamster  ----gatctaa------------------ttg--tg--------t--gtg---tttttccaaataggtca
                      Mouse  ataggatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
                        Rat  ataggatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
             Naked mole-rat  gtgggatctaa------------------ttt--ta------------t----tttttctaaataggtca
                 Guinea pig  gtaggatctaa------------------ttt--tg-----------tt----ttttcctaaataggtca
                 Chinchilla  gtaggatctaa------------------ttt--tg--------t--tt----tttttctaaataggtca
           Brush-tailed rat  gtaggatctaa------------------ttt--tg-----------tt----ttattctaaataggtca
                     Rabbit  gtagtatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
                       Pika  gtaggatgtaa------------------ttt--tg--------t--cc----tccttccaaataggtca
                        Pig  gtaggatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
                     Alpaca  gtaggatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
             Bactrian camel  gtaggatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
                    Dolphin  gtaggatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
               Killer whale  gtaggatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
           Tibetan antelope  gta-gatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
                        Cow  gta-gatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
                      Sheep  gta-gatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
              Domestic goat  gta-gatctaa------------------ttt--tg--------t--gt----tttttccaaataggtca
                      Horse  gtaggatctaa------------------ttt--tg--------t--tt----tttttccaaataggtca
           White rhinoceros  gtaggatctaa------------------ctt--tg--------t--tt----tttttccaaataggtca
                        Cat  ggaggatctaa------------------tgt--tg--------t--tt----tttttccaaataggtca
                        Dog  gtaggatctaa------------------ttt--tg--------t--tt----tttttccaaataggtca
                    Ferret   gtaggatctaa------------------ttt--tg--------t--tt----tttttccaaataggtca
                      Panda  gtaggatctaa------------------ttt--tg--------t--tt----tttttccaaataggtca
             Pacific walrus  gtaggatctaa------------------ttt--tg--------t--tt----tttttccaaataggtca
               Weddell seal  gtaggatctaa------------------ttt--tg--------t--tt----tttttccaaataggtca
           Black flying-fox  gtaggatctaa------------------ttt--ta--------t--tt----tttttccaatcaggtca
                    Megabat  gtaggatctaa------------------ttt--ta--------t--tt----tttttccaatcaggtca
              Big brown bat  gtagggtctaa------------------ttt--tgtgttgttgttgtt----ttttttcaaataggtca
       David's myotis (bat)  gtagggtctaa------------------ttt--tgtgttgttat--tt----ttttttcaaataggtca
                   Microbat  gtagggtctaa------------------ttt--tgtgttat--t--tt----ttttttcaaataggtca
                   Hedgehog  gtaggatctaa------------------tgt--t---------t--tt----tttttccaaataggtca
                      Shrew  gtaggatctaa------------------ttt--tg--------t--ct----ttcttctaaataggtca
            Star-nosed mole  gtaggatctaa------------------ttt--tg--------t--tt----tttttccaaataggtca
        Cape elephant shrew  gcaggatctaa-------------tttttttt--ta--------t--tt----tttccccaaacaggtca
                    Manatee  gtaggatctaa------------------ttt--tg--------t--tt----tttttccaaataggtca
           Cape golden mole  acagtatctaatttgttttttgtgtctttttt--gt--------t--tt----tttttccgaatagatca
                     Tenrec  gtaggatctaa------------------------a--------t--tt----tttctccaaataggttg
                   Aardvark  ataggatctaa------------------tct--tg--------t--tt----tttttcctaataggtca
                  Armadillo  gtaggatctaa------------------ttt--tg--------t--tt----tttttccaaataggtca
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ccgattgtttcagcatcacttattgaataatccaac--------------------------gcaacaac
                      Chimp  ccgattgtttcagcatcacttattgaataatccaac--------------------------gcaacaac
                    Gorilla  ccgattgtttcagcatcacttattgaataatccaac--------------------------gcaacaac
                  Orangutan  ccgattgtttcagcatcacttattgaataatccaac--------------------------gcaacaac
                     Gibbon  ccaattgtttcagcatcacttattgaataatccaac--------------------------gcaacaac
                     Rhesus  ccgattgtttcagcatcacttattgaataatccaac--------------------------gcaacaac
        Crab-eating macaque  ccgattgtttcagcatcacttattgaataatccaac--------------------------gcaacaac
                     Baboon  ccgattgtttcagcatcacttattgaataatccaac--------------------------gcaacaac
               Green monkey  ccgattgtttcagcatcacttattgaataatacaac--------------------------gcaacaac
                   Marmoset  ccaattgcttcagcatcacttattgaaaaatccaac--------------------------gcaacaac
            Squirrel monkey  ccaattttttcagcatcacttattgaaaaatccaac--------------------------gcaacaac
                   Bushbaby  tcaattgtttgcgcatcatttcttgagtaatccaacct----tcttccactgatctgaaatggcaacgac
         Chinese tree shrew  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactgatatgaaatgacaacaac
                   Squirrel  ccagttgtctcagcattatttattgaataatccaacct----tcttccactgatttgatatagcaacagc
     Lesser Egyptian jerboa  tcaagtgtttcagcattgcttattgaataaccccacct----tcctctactaatgtgcaatctcaacagc
               Prairie vole  ccaatggtttcagcattgtgaactgaataacacaacct----tcttccactgatgtgatgtgtcaacagc
            Chinese hamster  ccaattgtttcagcattacgtattgagtaatacagcct----tcttccactgatgtgaagtgtcaacagc
             Golden hamster  ccaattgcttcagcattacgtattgagtaatacagcct----tcttccaccgatgtgaagtgtcaacagc
                      Mouse  ccaattgtttcagcattgcgtattgaataatacaacct----tcttccactgccgtgaaatgtcaacagc
                        Rat  ccaattgtttcagcattgcgtattgaataatacaacct----tcttccactgccgtgaaatgtcaacagc
             Naked mole-rat  ccaattgtttcagcattacttattgagtaatccaagctggcttcttccactgatttgaaatggcaacagc
                 Guinea pig  ccaattgtttcagcattgcttattgaataagccaagcttgcttcttccagtgatttgcaacagcaacagc
                 Chinchilla  ccaattgtttgagcattacttattgaataattcaagctttcctcttccactgatttgaaacggcaacagc
           Brush-tailed rat  ccaattgttttggcattacttattgaataatccaagcttgcttcttccactgatttgaaa--acaacaac
                     Rabbit  ccaattgtatcagcatcatttattgaataatccaatct----tcttccactgatttgaaatggcaacaac
                       Pika  a----tgtttcagcatcgttcactgagtaatgtaa-------tcttccagtgatttcaaatggcaacaac
                        Pig  ccaattgtttcagcatcatttattgaataatcc-acct----tcctccactgatttgaaatgacaagaac
                     Alpaca  ccaattgtttcagcataatttattgaataatccaacct----tcttccactgatctgaaatggcaagaac
             Bactrian camel  ccaattgtttcagcataatttattgaataatccaacct----tcttccactgatctgaaatggcaagaac
                    Dolphin  ccaattgtttcagcatcatttattgaataatccaacct----ccttccactgatttgaaatggcaagaac
               Killer whale  ccaattgtttcagcatcatttattgaataatccaacct----ccttccactgatttgaaatggcaagaac
           Tibetan antelope  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactgatatgagatggcaagaac
                        Cow  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactgatttgaaatggcaagaac
                      Sheep  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactgatatgagatggcaagaac
              Domestic goat  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactgatatgagatggcaagaac
                      Horse  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactgatttgaaatggcaacaac
           White rhinoceros  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactgatttgaaatggcaacaac
                        Cat  ccaattgtttcagcatcatttattgaataatccaacct----ccttccactgatttcaaatggcaacaac
                        Dog  ccaattgtttcagcatcatttattgaataatccaacct-----cttccactgatttgaaatggcaacaac
                    Ferret   ccaattgtttcagcatcatttattgaataattcaacct----tcttccactgatatgaaatggcaacaac
                      Panda  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactggtttgaaatggcaacaac
             Pacific walrus  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactgatttgaaatggcaacaac
               Weddell seal  ccaattgtttcagcatcatttattgaataatccaactt----ccctccactgatttgaaatggcaacaac
           Black flying-fox  ccaattgtttcagcatcatttattgaataatccaatct----tcttccactgatttgaaatggcaacaac
                    Megabat  ccaattgtttcagcatcatttattgaataatccaatct----tcttccactgatttgaaatggcaacaac
              Big brown bat  ccatttgtttctgcatcatttattgaataatccagcgt----tcttccactgatttgaaatggcaacaac
       David's myotis (bat)  ccaattgtttctgcatcatttattgaataatccagcct----tcttccactgatttgaagtggcaacaac
                   Microbat  ccaattgtttctgcatcatttattgaataatccagcct----tcttccactgatttgaaatggcaacaac
                   Hedgehog  tcaattgtttcagcatcatttgttgaattacctaacct----tcctccactgatgtgaaatcacaa---c
                      Shrew  ccaattgtttcagcaacatttattgaataatccaac-------cttccactgatttgaaatgacatcagc
            Star-nosed mole  ccaattgtttcagcatcatttattgaataatccaacat----tcttccactgatttgaaatggcaacagc
        Cape elephant shrew  ctaataccttccgcatcatttattgaataattcaacct----tcttccactgattcaaaatggcgacaac
                    Manatee  ccaattgtttcagcatcatttattgaataatccaacct----tcttccactgatttgaaatggcaagaac
           Cape golden mole  ccaattgtttcaacaccatttcttgaataatccaatct----tcctccactgatttgaaatggcaacagc
                     Tenrec  tcaattgtttcagcatcatttattgaataatccaa-ct----ctcttcagtgatttgaaatggcaaccat
                   Aardvark  ccacttgtttcaacatcatttattgaataatccaacct----tcttccactggtttgaaatggcaacagc
                  Armadillo  ccaattgtttcagcatcatttattgaataatccaacct----ccttccactggtttgaaatgacaacaac
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  tgttcttccattagatagggt-gtagctttccacaggtcggccatttt-ctctttacc---caag-----
                      Chimp  tgttcttccattagatagggt-gtagctttccacaggtcggccatttt-ctctttacc---caag-----
                    Gorilla  tgttcttccattagatagggt-gtagctttccacaggtcggccatttt-ctctttacc---caag-----
                  Orangutan  tgttcttccattagatggggt-gtagctttccacaggtcggccatttt-ctctttacc---caag-----
                     Gibbon  tgttcttccattagatagggt-gtagctttccacaggtcggccatttt-ctctttacc---caag-----
                     Rhesus  tgtttttccattagatagggt-gtagctttccacaggtcggccatttt-ctctttacc---caag-----
        Crab-eating macaque  tgtttttccattagatagggt-gtagctttccacaggtcggccatttt-ctctttacc---caag-----
                     Baboon  tgtttttccattagatagggt-gtagctttccacaggtcggccatttt-ctctttacc---caag-----
               Green monkey  tgtttttccattagatagggt-gtagcttttcacaggtcggccatttt-ctctttacc---caag-----
                   Marmoset  tgttcttccattagatagggt-gtagctttacacaggtcggccattt---tctttacc---caag-----
            Squirrel monkey  tgttcttccattagatagggt-gtagctttacacaggtcggccattt---tctttaca---caag-----
                   Bushbaby  tattctcctattagacagggt-gtagctttccacaggtcggccatttt-ctctttact---caag-----
         Chinese tree shrew  tgttctcccatta----gggt-gttgttctccacaggtctgccatttt-ctccctacc---caag-----
                   Squirrel  tgttctcccattagatagggt-gtagctttccacaggtcggccatttt-ctctcaacc---caag-----
     Lesser Egyptian jerboa  tgttttaccattacatagggt-gtagctttccacaggtcggccatctt-ctctctacc---caag-----
               Prairie vole  tgttctcccattagataaggt-gtagctttccaaaggtcggccatttt-ctctctact---caag-----
            Chinese hamster  tgttctcccattagatagggt-gtagcgttccacaggtcagccatttt-ctctctgctacgtaagagtaa
             Golden hamster  tgatctcccattagatagggt-gtagctttccacaggtcagccatttt-ctctctactatataag-----
                      Mouse  tgctctcccactagatagggc-gtagctttccacaggtcggccatttt-ctttctatt---caag-----
                        Rat  tgctctcccactagatagggc-gtagctttccacaggtcggccatttt-ctttctatt---caag-----
             Naked mole-rat  tgttctcccattagatagggt-gtagcttgccacaggttggccattttcctctttacc---caag-----
                 Guinea pig  tgttctcccattagctagggt-gcagcttgccacaggtcggccatttt-ctctccacc---caag-----
                 Chinchilla  tgttctcccattagctagggt-gtagctttccacaggtcagccatttt-ctctctacc---caaa-----
           Brush-tailed rat  tgttctcccgttagctagggt-gtagctttccacaggtcagccatttt-ctctcca-c---caag-----
                     Rabbit  tgttcccttattagatatggt-gtagctttccacgagtcggccatttt-ctctctacc---caag-----
                       Pika  tcttctc-cattagataaggt-gtagctttccacaagtcggccatttt-ctgtctacc---caag-----
                        Pig  tgtgctcccgctagatagggg-gtagctttccccaggtcagccatttt-ctctccacc---caag-----
                     Alpaca  -gccccacccccagatagggt-gtagctttccacaggtcggccatttt---ctctacc---caag-----
             Bactrian camel  -gccccacccccagatagggt-gtagctttccacaggtcggccatttt---ctctacc---caag-----
                    Dolphin  tgtcctcccactagatagggt-gtagctttccacaggtcagccattttcctctttacc---cgag-----
               Killer whale  tgtcctcccactagatagggt-gtagctttccacaggtcagccattttcctctttacc---cgag-----
           Tibetan antelope  tgtcctcccactagatagggt-gtagctttccacaggtcggccatttt-ctctctacc---caag-----
                        Cow  tgtcctcccactagatagggt-gtagctttccacaggtcggccatttt-ctctctacc---caag-----
                      Sheep  tgtcctcccactagatagggt-gtagctttccacaggtcggccatttt-ctctctacc---caag-----
              Domestic goat  tgtcctcccactagatagggt-gtagctttccacaggtcggccatttt-ctctctacc---caag-----
                      Horse  tgctctcccattagatagggt-gtagctttccacaggtcggccatttt-ctctctacc---caag-----
           White rhinoceros  tgctctcccattagatagggt-gtagctttccacaggtcggccatttt-ctctctacc---caag-----
                        Cat  ttctctcccgttagctagggcaatag-tgtccacaggtcggccatttt-ctttctgcc---ccag-----
                        Dog  tgctgtcccattagctagggt-atag-tgtccacagataagccatgtt-ctttctacc---taag-----
                    Ferret   tgctctccctttagctagggt-atag-tgtccacaggttggccatttt-ctttctacc---cgag-----
                      Panda  tgctctcccattagctagggt-ataa-tgtccacaggtcggccatttt-ctttctacc---caag-----
             Pacific walrus  tgctctcccattagctagggt-atag-tgtccacaggtcggccatttt-ctctctacc---caag-----
               Weddell seal  tgctctcccattagctagggt-atag-tgtccacaggtcggccatttt-ctttctacc---caag-----
           Black flying-fox  tgttctctcatt-gatagggg-gtagctttccacaggtcggccatttt-ctctctacc---taag-----
                    Megabat  tgttctctcatt-gatagggg-gtagctttccacaggtcggccatttt-ctctctacc---taag-----
              Big brown bat  tgttctcttgttaggtagggt-gtagctttccacaggtcggccatttt-ctttctacc---taag-----
       David's myotis (bat)  tgttctcttgttaggtagggt-gtaactttccacaggtcagccatttt-ctttctacc---taat-----
                   Microbat  tgttctcttgttaggtagggt-gtaactttccacaggtcagccatttt-ctttctacc---taag-----
                   Hedgehog  tattctctccttagagagggt-gtagttttctgcaagtcagccatttt-ctccctacc---aaaa-----
                      Shrew  tgttctgccattaaagagggc-gtagctttgcaccagtcagccatttt-cttgttacg---cagg-----
            Star-nosed mole  tgttctcccgttagggcgggt-gtagcttcccaccagccggccatttt-ctctctgcc---cgag-----
        Cape elephant shrew  ccttctcccactgagtaggat-gtggctttccacaggtcagccatttt-ctctctacc---taag-----
                    Manatee  tgttctcccattagatagggt-atagctttccacaggtcggccatttt-ctctctacc---taag-----
           Cape golden mole  tcttcccttattagacagggt-gtagctttcctctggtctgccatttt-ttctttccc---taac-----
                     Tenrec  tgctctcccattagataggac-acagctttccaggggttggccatttt-ctctccacc---taag-----
                   Aardvark  tgttctcccatt----agggt-gtagcttcccacagg-cggccatttt-ctctggacc---taag-----
                  Armadillo  tgttctctcattagatagggt-gtagcttcccacaggtcggccatttt-ccctccacc---caaa-----
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  -----------atg
                      Chimp  -----------atg
                    Gorilla  -----------atg
                  Orangutan  -----------atg
                     Gibbon  -----------atg
                     Rhesus  -----------atg
        Crab-eating macaque  -----------atg
                     Baboon  -----------atg
               Green monkey  -----------atg
                   Marmoset  -----------atg
            Squirrel monkey  -----------atg
                   Bushbaby  -----------atg
         Chinese tree shrew  -----------atg
                   Squirrel  -----------atg
     Lesser Egyptian jerboa  -----------atg
               Prairie vole  -----------atg
            Chinese hamster  gatggttacatatg
             Golden hamster  -----------atg
                      Mouse  -----------atg
                        Rat  -----------atg
             Naked mole-rat  -----------atg
                 Guinea pig  -----------atg
                 Chinchilla  -----------atg
           Brush-tailed rat  -----------atg
                     Rabbit  -----------atg
                       Pika  -----------atg
                        Pig  -----------aag
                     Alpaca  -----------aag
             Bactrian camel  -----------aag
                    Dolphin  -----------gag
               Killer whale  -----------gag
           Tibetan antelope  -----------aag
                        Cow  -----------aag
                      Sheep  -----------aag
              Domestic goat  -----------aag
                      Horse  -----------ac-
           White rhinoceros  -----------atg
                        Cat  -----------gtg
                        Dog  -----------atg
                    Ferret   -----------atg
                      Panda  -----------atg
             Pacific walrus  -----------gtg
               Weddell seal  -----------atg
           Black flying-fox  -----------atg
                    Megabat  -----------atg
              Big brown bat  -----------atg
       David's myotis (bat)  -----------gtg
                   Microbat  -----------atg
                   Hedgehog  -----------att
                      Shrew  -----------agg
            Star-nosed mole  -----------atg
        Cape elephant shrew  -----------atg
                    Manatee  -----------atg
           Cape golden mole  -----------ctg
                     Tenrec  -----------atg
                   Aardvark  -----------atg
                  Armadillo  -----------ttg
                   Elephant  NNNNNNNNNNNNNN
            Tasmanian devil  ==============
                    Opossum  ==============
                   Platypus  ==============
         American alligator  ==============

Inserts between block 12 and 13 in window
B D             Guinea pig 198bp

Alignment block 13 of 118 in window, 140712103 - 140712186, 84 bps 
B D                   Human  gttacattttgcaatg-gtactcctaccttcct-gcagcttct----------gacagcatactagagca
B D                   Chimp  gttacattttgcaatg-gtactcctaccttcct-gcagcttct----------gacagcatactagagca
B D                 Gorilla  gttacattttgcaatg-gtactcctaccttcct-gcagcttct----------gacagcatactagagca
B D               Orangutan  gttacatttcgcaatg-gtactcctaccttcct-gcagcttct----------gacagcatactagagca
B D                  Gibbon  gttacatttcgcaatg-gtactcctaccttcct-gcagcttct----------gacagcatactagagca
B D                  Rhesus  gttacatttctcaata-gtgctcctaccttcct-gcagcttct----------gacagcatactagagca
B D     Crab-eating macaque  gttacatttctcaata-gtgctcctaccttcct-gcagcttct----------gacagcatactagagca
B D                  Baboon  gttacatttcgcaata-gtgctcctaccttcct-gcagcttct----------gacagcatactagagca
B D            Green monkey  gttacatttcgcaata-gtactcctaccttcct-gcagcttct----------gacagcatactagagca
B D                Marmoset  attacattttgcaata-gtactcctaccttcct-gcagcttct----------gacagcatactagagca
B D         Squirrel monkey  gttacatttcgcaata-gtactcctaccttctt-gcagcttct----------gacagcatactagagca
B D                Bushbaby  gttacattccgtaata-gtctccctaccttctt-gcagcttct----------ggaagcacactaaaaca
         Chinese tree shrew  gttgcattccgcaata-gtactcctatctcctt-gcagcttct----------ggcagcatactaaagtg
B D                Squirrel  gttaccatccacagt--gtattcgtaccttccc-atagcgcct----------ggcagcatactaaagca
     Lesser Egyptian jerboa  gctaaattccacagta-gtactcaga---tctt-gccagattt----------gggagcctgctaaagca
               Prairie vole  gttacattccattata-gtacttttaccttctt-gctacatcc----------attagcctgctaaagca
B D         Chinese hamster  gttacattccataaat-gtacttttgccttctt-gtcatattc----------agaagcctgctatagca
             Golden hamster  gttacatttcataaaa-gtacttttgccgtctt-gtcatattc----------agcagcctgctaaagca
B D                   Mouse  gttacattccacaata-gtacttttaccttctt-gccacatca----------tgcagcctgctaaacca
B D                     Rat  gttacattccacaata-gtacttttaccttctt-gccacatcc----------cacagcctgataagcca
B D          Naked mole-rat  gttacattccgcagtt-gtactctccccttctg-gcagcatct----------ggcagcatgctagagca
                 Chinchilla  gttacattccacaatc-atactcttaccttctg-gcagcatctggcagcatccggcagcatgctaaagca
           Brush-tailed rat  gttgcattccacaaca-gtactctttccctctg-gcagcacct----------ggcattgtgctaaagca
B D                  Rabbit  gtgacattccacaata-gtactcctaccttctt-caagcgtgtg---------ggcatcatgctaaagca
B D                    Pika  gtg--------caaca-atgcgcataccctctt-gaagtatgtg---------ggcagcatgctaaaaca
B D                     Pig  gttacatcccacagta-gcgctcctaccttctt-gcagcttct----------ggcagcattctctagca
B D                  Alpaca  gttaaattccacaata-gggctcctaccttctc-gcagcttcc----------ggcagcatcctaaagca
             Bactrian camel  gttaaattccacaata-gggctcctaccttctc-gcagcttcc----------ggcagcatcctaaagca
B D                 Dolphin  gttacatcccacagta-gtgctcctaccttctt-gcagcttct----------ggcggcattctatagca
               Killer whale  gttacatcccacagta-gtgctcctaccttctt-gcagcttct----------ggcggcattctatagca
           Tibetan antelope  gttacatccaacaata-gcactggtaccttctt-gcagcttct----------gacagctttctatacta
B D                     Cow  gttacatccaacaata-gcactggtaccttctt-gcagcttct----------gacagctttctatacta
B D                   Sheep  gttacatccaacaata-gcactggtaccttctt-gcagcttct----------gacagctttttatacta
              Domestic goat  gttacatccaacaata-gcactggtaccttctt-gcagcttct----------gacagctttttatacta
B D                   Horse  gttacattccacaata-ctgctcgtaccttctt-gcagcttct----------ggcagcattctaaagca
B D        White rhinoceros  gttacattccacaata-gtacttgtaccttctt-gcagcttct----------gggagcattctaaagca
B D                     Cat  gtccctttccgcaata-gtatttgtaccttctt-gcagcttcc----------ggtagcattctaaagca
B D                     Dog  gtcacattccacaata-gcactcttaccttctt-gcagctt--------------caacatgctaaaaca
B D                 Ferret   gtcacattcctcaata-gcactcctaccttctt-gcagcttct----------ggcagctttctaaaaca
B D                   Panda  gtcacattccacaata-gcattcctaccttctt-gcagcttct----------ggcagcattctaaaaca
             Pacific walrus  gtcacattccacaata-gcactcctaccttctt-gcggcttct----------ggcagccttctaaaaca
               Weddell seal  gtcacattccacaata-gcactcctaccttctt-gcagcttct----------ggcagcattctaaaaca
           Black flying-fox  gttacattccacaata-gtacccctaccttctt-gcagcttct----------ggaagcattctaaagcg
B D                 Megabat  gttacattccacaata-gtacccctaccttctt-gcagcttct----------ggaagcattctaaagcg
              Big brown bat  gttacattccacaata-gtactcctaccttcttaacagcttct----------gaaagcattccaaagtg
       David's myotis (bat)  gttacattccacaata-gcactcctaccttcttagcagcttct----------gaaagcattccaaagtg
B D                Microbat  gttacattccacaata-gcactcctaccttcttagcagcttct----------gaaagcatttcaaagtg
B D                Hedgehog  attatattccacagta------------ttctt-acagctcct----------ggccacattctagagca
B D                   Shrew  gttacatttcacaata-gtactcctacagtctt-gcagctatc----------agcagctttaggaggca
            Star-nosed mole  gttacatgccac--ta-gtccgcctgctttctt-acagctttt----------ggcagcgtcccaaagca
        Cape elephant shrew  gtcccattctgcaataagcacttcagccttctt-atgcttcct----------g-------------gca
B D                 Manatee  gttacatttcacaataagcactcctaccttctt-gcactttct----------gacagcatactaaagca
           Cape golden mole  attaca------------------------------------t----------tacagcatactaaaaca
B D                  Tenrec  gctacggagtacaatctgtacccggaccttctg-gcactttct----------ggcagctcacaaacaca
                   Aardvark  gtcacactccgcaataagtgtacc-accttctt-gccctttct----------ggcagc-cactaaagca
B D               Armadillo  gtt--attcttcaata-gtattcccatcttctt-gcagctcct----------ggcagtgtattaaagca
B D              Guinea pig  ======================================================================
B D                Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D                Platypus  ======================================================================
B D      American alligator  ======================================================================

                      Human  cca-----tgtttgtgc-ttgtgcgtttcaaa
                      Chimp  cca-----tgtttgtgc-ttgtgcgtttcaaa
                    Gorilla  cca-----tgtttgtgc-ttgtgcgtttcaaa
                  Orangutan  cca-----tgtttgtgc-ttgtgcgtttcaaa
                     Gibbon  cca-----tgtttgtgc-ttgtgcgtttcaaa
                     Rhesus  cca-----tgtttgtgc-atgtgcctttcaaa
        Crab-eating macaque  cca-----tgtttgtgc-atgtgcctttcaaa
                     Baboon  cca-----tgtttgtgc-atgtgcctttcaaa
               Green monkey  cca-----tgtttgtgc-acgtgcctttcaaa
                   Marmoset  cca-----tgtttgtgc-------ctttcaaa
            Squirrel monkey  cca-----tgtttgtgc-ttgtgtctttcaaa
                   Bushbaby  tca-----cgtttgtgc-ttatgcatttcaaa
         Chinese tree shrew  tcg-----tgttcctgc-ttatgcctttcaag
                   Squirrel  aca-----cgtttgtgc--tctgcctttcaag
     Lesser Egyptian jerboa  cta-----tgtttgtac-ttttgcatttcaag
               Prairie vole  ctg-----tgtttatat-ttttgcctttcaag
            Chinese hamster  ttt-----tg----tac-ttctaactttcaaa
             Golden hamster  ttt-----tgtttatac-ttttgcttttcaag
                      Mouse  ttg-----tgtttatatattttacctttcaag
                        Rat  atg-----tgtttatacattttgcctttcaag
             Naked mole-rat  tca-----tgtttgtgc---------------
                 Chinchilla  tca-----tgtttgtgc-ctctgcctttcagg
           Brush-tailed rat  cca-----tgtttgttc-ttctgccttgtaag
                     Rabbit  tca-----tgtttgtgc-ttatgcctttctag
                       Pika  tgc-----t-tttttgc--tacacctttctag
                        Pig  cca-----tgttcctgc-tgatagctttcgcg
                     Alpaca  cca-----tgttctggc-tgatgcgttcc-ca
             Bactrian camel  cca-----tgttccggc-tgatgcgttcc-ca
                    Dolphin  tca-----tgttcttgc-tgatgcctttcacg
               Killer whale  tca-----tgttcttgc-tgatgcctttcacg
           Tibetan antelope  tagc----catggttgc-tgatgcctttcaca
                        Cow  tagcatcacgttcttgc-tgatgcctttcaca
                      Sheep  tagc----catggttgc-tgatgcctttctca
              Domestic goat  tagc----catggttgc-tgatgcctttctca
                      Horse  tca-----tgttcgtgc-taatgcctttcgag
           White rhinoceros  tca-----tgtttgtgc-tgatacctttcaag
                        Cat  tca-----cgttcgtgc-ttatgcctttcaag
                        Dog  tca-----tgttcgtgc-tcatgcctttcaag
                    Ferret   tca-----tgttcgtgt-tcatgcctttcaag
                      Panda  tca-----tgtttgtgc-tcatgcctttcaag
             Pacific walrus  tca-----tgttcgtgc-tcatgcctttcaag
               Weddell seal  tca-----tgttcgtgc-tcatgcctttcagg
           Black flying-fox  cca-----tgttcatat-ttatacccttcaag
                    Megabat  cca-----tgttcatat-ttatacccttcaag
              Big brown bat  tca-----tggtcatgc-ttatgcacttcaag
       David's myotis (bat)  tca-----tggtcatgc-ttatgctcttcaag
                   Microbat  tca-----tggtcatgc-ttatgctcttcaag
                   Hedgehog  ttc-----cacctatgc-tcatacctctcaag
                      Shrew  tca-----tgttggtac-taatgtctttcaag
            Star-nosed mole  tcc-----tggtcgtgc-tcatacctttcaag
        Cape elephant shrew  tca-----tgtttgtgt-atagggctttcaag
                    Manatee  tca-----tgttcgtgc-ttatggctttcaag
           Cape golden mole  tca-----tcttcgtgc-ttacggcttttcag
                     Tenrec  ttc-----gatccatgc-ttatggctttcaaa
                   Aardvark  tca-----cgtatgtgc-ttatagctttcaag
                  Armadillo  ttc-----tcttt-tat-taatgcctttcaag
                 Guinea pig  ================================
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ================================
                    Opossum  ================================
                   Platypus  ================================
         American alligator  ================================

Alignment block 14 of 118 in window, 140712187 - 140712238, 52 bps 
B D                   Human  aatccta--ggcacatgcagat-tagggcagta---t--tttaaacaggat-------------------
B D                   Chimp  aatccta--ggcacatgcagat-tagggcagta---t--tttaaacaggac-------------------
B D                 Gorilla  aatccta--ggcacatgcagat-tagggcagta---t--tttaaacaggat-------------------
B D               Orangutan  aatccta--ggcacatgcagat-tagggcagta---t--tttaaacaggat-------------------
B D                  Gibbon  aatccta--ggcacatgcagat-tagggcaata---t--tttaaacaggat-------------------
B D                  Rhesus  aatccta--ggcacatgcagat-tagggcagta---t--tttaagcagga--------------------
B D     Crab-eating macaque  aatccta--ggcacatgcagat-tagggcagta---t--tttaagcagga--------------------
B D                  Baboon  aatccta--ggcacatgcagat-tagggcagta---t--tttaagcaggat-------------------
B D            Green monkey  aatccta--ggcacatgcagat-tagggcagta---t--tttaagcaggat-------------------
B D                Marmoset  aatccta--ggcacatgcagat-tagggcagtggt-t--ttgaaacaggat-------------------
B D         Squirrel monkey  aatccta--ggcacatgcagat-tagggaagtggt-t--tttaaacaggat-------------------
B D                Bushbaby  aattcca--agtacatacagtt-taggccaggg---t--tttgaa-acaat-------------------
         Chinese tree shrew  aatgcta--ggcacatacagtc-caggatagtaga-t--ttcaaacaagat-------------------
B D                Squirrel  accccta--ggcacttgcagtt-gtggacagtggt-t--ttcaaacaggat-------------------
               Prairie vole  aatccta--gttctatgtagtt-tagaacaggtat-t--ttcaaacaggttatatatgta-atgc-----
B D         Chinese hamster  aatcctt--gct----------------------------------------------------------
             Golden hamster  aatccta--actgtatatagtt-tagaacagttat-t--ttcaaata-gttatttccaaa-atg------
B D                   Mouse  aatccta--gctgtatacagtt-tagaacagtaat-t--ttcaaatagggtatatatatatatatatatg
B D                     Rat  agtctta--gctgcatacagtt-tagtacagtgaa-t--ctcaaacagaatatatatatatatat-----
B D          Naked mole-rat  ------------------agtg-aaagac--tggt-t--tttgaacagaaa-------------------
                 Chinchilla  agtccta--ggcctgtacagtc-aaatatagtggt-t--ttcaaacacgaa-------------------
           Brush-tailed rat  agtccca--ggcatatgtagttaaaagactgtggt-t--ttcaaacagaaa-------------------
B D                  Rabbit  aatccta--ggcacatgcagtt-tagcttagtggt-t--tacaaaaatgga-------------------
B D                    Pika  a----------cacttggagtt-tagagcagtgat-t--taccagaaagga-------------------
B D                     Pig  aattcta--ggcacacgcagtt-tggggcattggt-t--ttcaaaccggat-------------------
B D                  Alpaca  aattcta--ggcacatgcagtt-tagggaggtggt-t--tgcaaacaggat-------------------
             Bactrian camel  aattcta--ggcacatgcagtt-tagggaggtggt-t--tgcaaacaggat-------------------
B D                 Dolphin  acttcta--gacacaaccagtt-tagggcagtggt-t--ttcaaacaggat-------------------
               Killer whale  acttcta--gacacaaccagtt-tagggcagtggt-t--ttcaaacaggat-------------------
           Tibetan antelope  aattcag--ggcacacacagtt-tagggcagtggt-t--ttcaaacaggat-------------------
B D                     Cow  aattcag--ggcacacacagtt-tagggcagtggt-t--ttcaaacaggat-------------------
B D                   Sheep  aattcag--ggcacacacagtt-tagggcagtggt-t--ttcaaacaggat-------------------
              Domestic goat  aattcag--ggcacacacagtt-tagggcagtggt-t--ttcaaacaggat-------------------
B D                   Horse  aattcta--ggcacatgcagtt-tagggcagtggt-t--ttcaaataggat-------------------
B D        White rhinoceros  aattata--ggcacatgcagtt-tagggcagtggt-t--ttcaaacaggat-------------------
B D                     Cat  gattcta--gacacatgcagta-tagctcagtggt-t--ttcagacaggat-------------------
B D                     Dog  aattcta--ggcacatgcggtt-tagggtagtggt-t--ttcaaacaggat-------------------
B D                 Ferret   gattcta--ggcacatgtggtt-tagggcagtggt-t--ttcaaacaggat-------------------
B D                   Panda  aattcta--ggcacatgcagtt-cagggcagtggt-t--ttcaaacaggat-------------------
             Pacific walrus  aattcta--ggcacatgcagtt-tagggcagtggt-t--ttcaaacaggat-------------------
               Weddell seal  aattcta--ggcacatgcagtt-tagggcagtggt-t--ttcaaacaggat-------------------
           Black flying-fox  aattcta--ggcacttgtagtt-ttggacagtggt-t--ttcaaacaggat-------------------
B D                 Megabat  aattcta--ggcacttgtagtt-ttggacagtggt-t--ttcaaacaggat-------------------
              Big brown bat  aattcta--ggcacattcagtt-tcaggcagatgt-t--ttcaaacagaat-------------------
       David's myotis (bat)  aattcta--ggcacattcagtt-tcaggcagatgt-t--ttcaaacaggat-------------------
B D                Microbat  aattcta--ggcacattcagtt-tcaggcagatgt-t--ttcaaacaggat-------------------
B D                Hedgehog  ga-tcta--ggcacatgcactt-tgggacaagggt-t--tttaaccaagat-------------------
B D                   Shrew  aattcta--ggcacacacag-t-caggacagtgtt-t--tgcaaccag----------------------
            Star-nosed mole  aattcta--ggtacatgcagtt-tagggtgatggt-t--tccaaaaggga--------------------
        Cape elephant shrew  aattcta--ggcacgggcattt-ggggactgtgatat--ttcaagtacgat-------------------
B D                 Manatee  aattcta--ggcacatgcactt-taggacagtggt-t--ttcaatcagcat-------------------
           Cape golden mole  aattcta--ggcacatgcattt-taggacaggggt-c--ttgaaaccggat-------------------
B D                  Tenrec  ggtgctaatggcacgtgtattt-------gggtgt-catttcaaacagaat-------------------
                   Aardvark  aaatcta--ggcatgtgggttt-taggacagtggc-t--ttcaaatagcag-------------------
B D               Armadillo  aatccta--ggcacatgcattt-taaggcagtggt-t--ttctatcagcat-------------------
    Lesser Egyptian jerboa  ----------------------------------------------------------------------
B D              Guinea pig  ======================================================================
B D                Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D                Platypus  ======================================================================
B D      American alligator  ======================================================================

                      Human  ----------------------------------------------------------------------
                      Chimp  ----------------------------------------------------------------------
                    Gorilla  ----------------------------------------------------------------------
                  Orangutan  ----------------------------------------------------------------------
                     Gibbon  ----------------------------------------------------------------------
                     Rhesus  ----------------------------------------------------------------------
        Crab-eating macaque  ----------------------------------------------------------------------
                     Baboon  ----------------------------------------------------------------------
               Green monkey  ----------------------------------------------------------------------
                   Marmoset  ----------------------------------------------------------------------
            Squirrel monkey  ----------------------------------------------------------------------
                   Bushbaby  ----------------------------------------------------------------------
         Chinese tree shrew  ----------------------------------------------------------------------
                   Squirrel  ----------------------------------------------------------------------
               Prairie vole  --------atatatgtt-----------atgtgtgtt------tgtgtgtgtgtgtg-------------
            Chinese hamster  ----------------------------------------------------------------------
             Golden hamster  -----------------------------tgtgtgtt----------------tgta-------------
                      Mouse  aacataatatatttattcttaagcaagtatatatcttatataaaacttaaatatatagaactc--atata
                        Rat  ---------------ttcttaagcaa--aaatatcttaaataaaacttaaatatatagaactcagacata
             Naked mole-rat  ----------------------------------------------------------------------
                 Chinchilla  ----------------------------------------------------------------------
           Brush-tailed rat  ----------------------------------------------------------------------
                     Rabbit  ----------------------------------------------------------------------
                       Pika  ----------------------------------------------------------------------
                        Pig  ----------------------------------------------------------------------
                     Alpaca  ----------------------------------------------------------------------
             Bactrian camel  ----------------------------------------------------------------------
                    Dolphin  ----------------------------------------------------------------------
               Killer whale  ----------------------------------------------------------------------
           Tibetan antelope  ----------------------------------------------------------------------
                        Cow  ----------------------------------------------------------------------
                      Sheep  ----------------------------------------------------------------------
              Domestic goat  ----------------------------------------------------------------------
                      Horse  ----------------------------------------------------------------------
           White rhinoceros  ----------------------------------------------------------------------
                        Cat  ----------------------------------------------------------------------
                        Dog  ----------------------------------------------------------------------
                    Ferret   ----------------------------------------------------------------------
                      Panda  ----------------------------------------------------------------------
             Pacific walrus  ----------------------------------------------------------------------
               Weddell seal  ----------------------------------------------------------------------
           Black flying-fox  ----------------------------------------------------------------------
                    Megabat  ----------------------------------------------------------------------
              Big brown bat  ----------------------------------------------------------------------
       David's myotis (bat)  ----------------------------------------------------------------------
                   Microbat  ----------------------------------------------------------------------
                   Hedgehog  ----------------------------------------------------------------------
                      Shrew  ----------------------------------------------------------------------
            Star-nosed mole  ----------------------------------------------------------------------
        Cape elephant shrew  ----------------------------------------------------------------------
                    Manatee  ----------------------------------------------------------------------
           Cape golden mole  ----------------------------------------------------------------------
                     Tenrec  ----------------------------------------------------------------------
                   Aardvark  ----------------------------------------------------------------------
                  Armadillo  ----------------------------------------------------------------------
     Lesser Egyptian jerboa  ----------------------------------------------------------------------
                 Guinea pig  ======================================================================
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ------ttt-----tttttt
                      Chimp  ------ttt-----tttttt
                    Gorilla  ------ttt-----tttttt
                  Orangutan  ------ttt-----tttttt
                     Gibbon  ------ttt-----tttttt
                     Rhesus  ------ttt-----ttttt-
        Crab-eating macaque  ------ttt-----ttttt-
                     Baboon  ------ttt-----ttttt-
               Green monkey  ------ttt-----ttttt-
                   Marmoset  ------ttt-----gttttt
            Squirrel monkey  ------ttt-----gttttt
                   Bushbaby  ------ttt-----tttt--
         Chinese tree shrew  ------tttgaaaacttta-
                   Squirrel  ------ttc-----ttttt-
               Prairie vole  ------tgt-----gtgta-
            Chinese hamster  --------------------
             Golden hamster  ------tat-----atata-
                      Mouse  tacatatat-----gtata-
                        Rat  tacatatat-----gtata-
             Naked mole-rat  ---------------tttt-
                 Chinchilla  ----------------ttt-
           Brush-tailed rat  ----------------ttt-
                     Rabbit  ------tac------tttt-
                       Pika  ------tgc-----ttttt-
                        Pig  ------ttta----------
                     Alpaca  ------tttaaaatgttca-
             Bactrian camel  ------tttaaaatgttca-
                    Dolphin  ------tttaaaattttaa-
               Killer whale  ------tttaaaattttaa-
           Tibetan antelope  ------ttaaacattttaa-
                        Cow  ------ttaaac--------
                      Sheep  ------ttaaacattttaa-
              Domestic goat  ------ttaaacattttaa-
                      Horse  ------tttaaaattttaa-
           White rhinoceros  ------ttaaaatttttaa-
                        Cat  ------ttttaaattttaa-
                        Dog  ------ttttagattttaa-
                    Ferret   ------ttataaatttaaa-
                      Panda  ------ttttaaattttaa-
             Pacific walrus  ------ttttaaattttaa-
               Weddell seal  ------ttttaaattttaa-
           Black flying-fox  ------ttaaaatttttaa-
                    Megabat  ------ttaaaatttttaa-
              Big brown bat  ------tttaa------aa-
       David's myotis (bat)  ------tttaaa--attaa-
                   Microbat  ------tttaaa--attaa-
                   Hedgehog  ------tttgatgttttac-
                      Shrew  ---------aaagttttt--
            Star-nosed mole  ------ttcaacattttta-
        Cape elephant shrew  ------tttaa---------
                    Manatee  ------tttta---------
           Cape golden mole  ------tgcta---------
                     Tenrec  ------ggtta---------
                   Aardvark  ------ttttc---------
                  Armadillo  ------tattt---------
     Lesser Egyptian jerboa  --------------------
                 Guinea pig  ====================
                   Elephant  NNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ====================
                    Opossum  ====================
                   Platypus  ====================
         American alligator  ====================

Inserts between block 14 and 15 in window
B D               Marmoset 8bp
B D        Squirrel monkey 1bp
        Chinese tree shrew 1bp
B D                 Alpaca 1bp
            Bactrian camel 1bp
B D                Dolphin 1bp
              Killer whale 1bp
          Tibetan antelope 1bp
B D                    Cow 1bp
B D                  Sheep 1bp
             Domestic goat 1bp
B D                  Horse 1bp
B D       White rhinoceros 1bp
B D                    Cat 1bp
B D                    Dog 1bp
B D                Ferret  1bp
B D                  Panda 1bp
            Pacific walrus 1bp
              Weddell seal 1bp
          Black flying-fox 1bp
B D                Megabat 1bp
             Big brown bat 1bp
      David's myotis (bat) 1bp
B D               Microbat 1bp
B D               Hedgehog 1bp
           Star-nosed mole 1bp

Alignment block 15 of 118 in window, 140712239 - 140712255, 17 bps 
B D                   Human  ---------ca-ttttaaatat--g--ttaa
B D                   Chimp  ---------ca-ttttaaatat--g--ttaa
B D               Orangutan  ---------ca-ttttaaatat--g--ttac
B D                  Gibbon  ---------ca-ttttaaatat--g--ttac
B D                  Rhesus  ---------ca-ttttaactgt--g--ttac
B D     Crab-eating macaque  ---------ca-ttttaactgt--g--ttac
B D                  Baboon  ---------ca-ttttaactgt--g--ttac
B D            Green monkey  ---------ca-ttttaactat--g--ttac
B D                Marmoset  ---------tt-tttcaaatat---------
B D         Squirrel monkey  ---------ca-ttttaaatat---------
B D                Bushbaby  ---------ca-ttttaaatat--t--taaa
         Chinese tree shrew  ---------at-atttaaaggt--t--ttat
B D                Squirrel  ---------ca-ttttaaatat--t--ttaa
               Prairie vole  ---------ta-tgttaaatag--t--taaa
             Golden hamster  ---------ta-tgttaaatag-----taga
B D                   Mouse  ---------ta-tttaagagag--ttataga
B D                     Rat  ---------ta-tttaagatat--ttataaa
B D          Naked mole-rat  ---------ta-tggaaaatat--t--tgaa
                 Chinchilla  ---------ta-tttgaaatat--t--tgaa
           Brush-tailed rat  ---------ta-ggttaaatat--t--tgaa
B D                  Rabbit  ---------ca-ttttaaatgt-----ttaa
B D                    Pika  ---------ct-ttttaaatgt-----tcga
B D                     Pig  ----------------aaa------------
B D                  Alpaca  ---------ta-tttaaaattt--t--tac-
             Bactrian camel  ---------ta-tttaaaattt--t--tac-
B D                 Dolphin  ---------ca-tttaaaa-at--t--taa-
               Killer whale  ---------ca-tttaaaa-at--t--taa-
           Tibetan antelope  ---------ta-gtcaaaa-aa--t--tat-
B D                     Cow  ---------ta-gtcaaaa-aa--t--tat-
B D                   Sheep  ---------ta-gtc-aaa-aa--t--tat-
              Domestic goat  ---------ta-gtc-aaa-aa--t--tat-
B D                   Horse  ---------ta-cttgaaaatt--t--tat-
B D        White rhinoceros  ---------ta-cttaaaaatt--t--tat-
B D                     Cat  ---------ta-ctcccaaact--g--tac-
B D                     Dog  ---------ta-ttccaaaatt--a--tat-
B D                 Ferret   ---------tt-ttccaaaatt--g--tat-
B D                   Panda  ---------tt-ttccaaaatt--a--ta--
             Pacific walrus  ---------tt-ttccaaaatt--g--tat-
               Weddell seal  ---------tt-ttccaaaatt--a--tat-
           Black flying-fox  ---------ta-tttaaaaatt--t--tat-
B D                 Megabat  ---------ta-tttaaaaatt--t--tat-
              Big brown bat  ---------ta-tttaaa----------at-
       David's myotis (bat)  ---------ta-ttcaaaattt--t--tat-
B D                Microbat  ---------ta-tttaaatttt--t--tat-
B D                Hedgehog  ------------tgctaaaactcat--tat-
B D                   Shrew  ------------tttaaaaatt--g--aaa-
            Star-nosed mole  ---------ttgttttaaaatt--t--tat-
        Cape elephant shrew  aattttaaata-ttgtaagatt--t--tct-
B D                 Manatee  cattttaaata-tttaaaattt--t--tat-
           Cape golden mole  gattgaaaata-tttcaacatt--t--tct-
B D                  Tenrec  tatttacaata-tt--aaaaat--t--tcc-
                   Aardvark  cattttaaata-ttcttaaatt--t--tat-
B D               Armadillo  aattttaaata-tt--taaatt--t--tta-
B D         Chinese hamster  -------------------------------
    Lesser Egyptian jerboa  -------------------------------
B D              Guinea pig  ===============================
B D                Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D         Tasmanian devil  ===============================
B D                 Opossum  ===============================
B D                Platypus  ===============================
B D      American alligator  ===============================

Inserts between block 15 and 16 in window
B D                 Rhesus 1bp
B D    Crab-eating macaque 1bp
B D                 Baboon 1bp
B D               Bushbaby 8bp
B D               Squirrel 8bp
              Prairie vole 15bp
            Golden hamster 8bp
B D                  Mouse 19bp
B D                    Rat 15bp
B D         Naked mole-rat 8bp
                Chinchilla 8bp
          Brush-tailed rat 8bp
B D                 Rabbit 10bp
B D                   Pika 8bp

Alignment block 16 of 118 in window, 140712256 - 140712315, 60 bps 
B D                   Human  gtttgtcacattc-t-t-gttgc-aaattaaaa-tt---aa-ggaatc--caaatatat-gaaaccacg-
B D               Orangutan  atttgtcacattc-t-t-gttgc-------aaa-tg---aa-ggaatc--caaatatat-gaaaccacg-
B D                  Gibbon  gtttgtcacattc-t-t-gttgc-aaattaaaa-tt---aa-ggaatc--caaatatat-gaaaccacg-
B D                  Rhesus  gtttgtcacattc-t-t-gttgc-aaattaaaa-tt---aa-ggaatc--caaatacag-gaaaccacg-
B D     Crab-eating macaque  gtttgtcacattc-t-t-gttgc-aaattaaaa-tt---aa-ggaatc--caaatacag-gaaaccacg-
B D                  Baboon  gtttgtcacattc-t-t-gttgc-aaattaaaa-tt---aa-ggaatc--caaatacag-gaaaccacg-
B D            Green monkey  gtttgtcacattc-t-t-gttgc-aaattaaaa-tt---aa-ggaatc--caaatacag-gaaaccacg-
B D                Marmoset  gtttgccacatgc-t-t-gatac-aaattaaaa-tt---aa-ggaatc--caaatatat-gaaaccact-
B D         Squirrel monkey  gtttgtcacatgc-t-t-gttac-aaactaaaa-tt---aa-ggaatc--caaatatat-gaaaccact-
B D                Bushbaby  ttttcttgcatgc-t-t-gatac-aaattaaaa-tt---ga-ggaatt--caaatatgtaaaaaccact-
         Chinese tree shrew  ttttgttatgtgc-a-t-tttgtaaaattaaca-tt---ga-ggaatc--caagtacat--aaaccact-
B D                Squirrel  ctttgtcacatgttt-t-ttttt-acattaaaaatt---ga-ggaatc--cagttatat-aaaaccact-
               Prairie vole  --------------t-t-tttac-gaattagaagtt---aa-ggagtc--caatgacat-agaa-tact-
B D         Chinese hamster  -----------------------------------------------------tgatac-agaa-ttct-
             Golden hamster  --------------t-t-tttac-aaattagaagtt---gg-ggaatt--caatgatac-agaa-taca-
B D                   Mouse  ttatct---atttat-t-tttac-aaattagaagtt---gg-gaaatc--caatgacat-agaa-cact-
B D                     Rat  ctttct---atttat-t-tttac-aaattagaagtt---gg-ggaatc--caatgacat-ggaa-cact-
B D          Naked mole-rat  ttttgtcact----t-t-tctac-aaattaaaa--t---tg-agaaac--tgactatag-aaaaccact-
                 Chinchilla  ttttgtcact----t-t-tttac-aaattaaaa--t---tg-agaaac--tgactatag-aaaaccatt-
           Brush-tailed rat  tttggtcaa-----t-t-tttat-gaagtagag--t---tg-aaaaac--tgactacag-aaaaccatt-
B D                  Rabbit  ctttgtcgtgtgttt-t--ttac-aaattaaat--g---aa-gaaata--caaatacat-aaaacttct-
B D                    Pika  cgttgtcatatgctt-t-attcc-aactaaaat--g---ga-taaatt--aaaatatat-aaaaccact-
B D                  Alpaca  ttttatcagatac-t-t-tttac-aaattaaaa-tg---gacagaatc--ctaatatat-aaaaccact-
             Bactrian camel  ttttatcagatac-t-t-tttac-aaattaaaa-tg---gacggaatc--ctaatatat-aaaaccagt-
B D                 Dolphin  ttttatcagatgc-t-t-tttac-aaatgaaaa-tt---ga-ggaatc--ctgatgtat-aaaaccact-
               Killer whale  ttttatcagatgc-t-t-tttac-aaatgaaaa-tt---ga-ggaatc--ctgatgtat-aaaaccact-
           Tibetan antelope  ctttctgagatgc-g-t-tttac-aagtgaaaa-tc---ga-ggaatc--ctgatctat-taaaccact-
B D                     Cow  ctttctgagatgc-g-t-tttac-aagtgaaaa-tc---ga-ggaatc--ctgatatat-gaaaccact-
B D                   Sheep  ctttctgagatgc-g-t-tttac-aagtgaaaa-tc---ga-ggaatc--ctgatatat-taaaccact-
              Domestic goat  ctttctgaggtgc-g-t-tttac-aagtgaaaa-tc---ga-ggaatc--ctgatatat-taaaccact-
B D                   Horse  ttttatcagatgc-c-t-tttac-aaattaaga-tt---ga-ggaatc--tgaatatat-aaaacctct-
B D        White rhinoceros  ttttatcagatgc-t-t-tttac-aaattaaaa-tt---ga-ggaatc--tgaatatat-aaaaccact-
B D                     Cat  ttttatcagatgc-t-t-tttac-aaattaaaa-ct---ga-gggaag--tgaatatat-aaaaccact-
B D                     Dog  ttttatcagatgc-t-t-tttac-aaattaaaa-tc---ga-ggaatc--cgagtatat-aaaaccact-
B D                 Ferret   ttttatcggatgc-t-t-ttcac-aaattaaaa-tt---ga-ggaatc--tgaatatag-aaaaccact-
B D                   Panda  ttttatcagacgc-t-t-tttac-aaattaaaa-tt---gg-ggaatc--cgactatat-aaaaccact-
             Pacific walrus  ttttatcagatgc-t-t-tttac-aaattaaaa-tt---ga-ggaatc--cgaatatat-agaaccact-
               Weddell seal  ttttatcagatgc-t-t-tttac-aaattaaaa-tt---ga-ggaatc--cgaatatat-agaatcact-
           Black flying-fox  tttcgtcagatgt-t---tttac-taattaaaa-tt---ga-agaatc--caaa-aaat-aaaaccact-
B D                 Megabat  tttcatcagacgt-t---tttac-taattaaaa-tt---ga-agaatc--caaa-aaat-aaaaccact-
              Big brown bat  ttttatcagatgt-t-tttttac-aaattaaaa-tt---ga-gaaatc--tgaatatat-aaaaccact-
       David's myotis (bat)  ttttatcagatgt-t-tgtttac-aaattaaaa-tt---ga-gaaatc--tgaatatat--aaaccact-
B D                Microbat  ttttatcaaat-t-t-tttttac-aaattaaaa-tt---ga-gaaatc--tgaatatat-aaaaccact-
B D                Hedgehog  ttttaccagatgc-t-t-tgaaa-aaattcaaa------ag-ggactg--tgaatatat-atatatatat
B D                   Shrew  ttttacgaggtgc-t-g-tgtac-agattaaaa-tc---aa-ggaatc--caaatgtat-tgaaccatg-
            Star-nosed mole  tttcctctgtcat-t-t-tttac-aaattaaaa-tt---ga-ggaatc--cagatataa-gaactcatg-
        Cape elephant shrew  ctttagcagatat-a-t-cttac-aaatgaaaa-tg---ga-ggaatatgtagatacat-aaaaccact-
B D                 Manatee  atttagcagattt-gtt-tttac-aaatgaaaa-ct---ga-ggaatc--caaatatat-aaaaccact-
           Cape golden mole  gtttagcgatgct-t-t-tctcc-aaaccaaca-ct---ga-ggaatg--caaatacgt-aaaaccact-
B D                  Tenrec  ttttaggaaaggc-t-t-ttgac-aaatgaaac-tc---at-ggaata--taaatatat-aaaaccact-
                   Aardvark  ttttagcagatgc-t-t-gt-----aatgcaga-ctgagga-ggaatc--catatatat-gaaaacact-
B D               Armadillo  ttttagcagacgc-t-t-tttac-aaattaaaa-ct---ga-agaat---caaacatat-aaaaccgct-
    Lesser Egyptian jerboa  ----------------------------------------------------------------------
B D              Guinea pig  ======================================================================
B D                Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Pig  ----------------------------------------------------------------------
B D                   Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D                Platypus  ======================================================================
B D      American alligator  ======================================================================

                      Human  ----------------------------------------------------------------------
                  Orangutan  ----------------------------------------------------------------------
                     Gibbon  ----------------------------------------------------------------------
                     Rhesus  ----------------------------------------------------------------------
        Crab-eating macaque  ----------------------------------------------------------------------
                     Baboon  ----------------------------------------------------------------------
               Green monkey  ----------------------------------------------------------------------
                   Marmoset  ----------------------------------------------------------------------
            Squirrel monkey  ----------------------------------------------------------------------
                   Bushbaby  ----------------------------------------------------------------------
         Chinese tree shrew  ----------------------------------------------------------------------
                   Squirrel  ----------------------------------------------------------------------
               Prairie vole  ----------------------------------------------------------------------
            Chinese hamster  ----------------------------------------------------------------------
             Golden hamster  ----------------------------------------------------------------------
                      Mouse  ----------------------------------------------------------------------
                        Rat  ----------------------------------------------------------------------
             Naked mole-rat  ----------------------------------------------------------------------
                 Chinchilla  ----------------------------------------------------------------------
           Brush-tailed rat  ----------------------------------------------------------------------
                     Rabbit  ----------------------------------------------------------------------
                       Pika  ----------------------------------------------------------------------
                     Alpaca  ----------------------------------------------------------------------
             Bactrian camel  ----------------------------------------------------------------------
                    Dolphin  ----------------------------------------------------------------------
               Killer whale  ----------------------------------------------------------------------
           Tibetan antelope  ----------------------------------------------------------------------
                        Cow  ----------------------------------------------------------------------
                      Sheep  ----------------------------------------------------------------------
              Domestic goat  ----------------------------------------------------------------------
                      Horse  ----------------------------------------------------------------------
           White rhinoceros  ----------------------------------------------------------------------
                        Cat  ----------------------------------------------------------------------
                        Dog  ----------------------------------------------------------------------
                    Ferret   ----------------------------------------------------------------------
                      Panda  ----------------------------------------------------------------------
             Pacific walrus  ----------------------------------------------------------------------
               Weddell seal  ----------------------------------------------------------------------
           Black flying-fox  ----------------------------------------------------------------------
                    Megabat  ----------------------------------------------------------------------
              Big brown bat  ----------------------------------------------------------------------
       David's myotis (bat)  ----------------------------------------------------------------------
                   Microbat  ----------------------------------------------------------------------
                   Hedgehog  atatatatatgtgtgtgtgtgtgtgtgtgtgtgtatgtatatagatatatgtgtatatacacacacacac
                      Shrew  ----------------------------------------------------------------------
            Star-nosed mole  ----------------------------------------------------------------------
        Cape elephant shrew  ----------------------------------------------------------------------
                    Manatee  ----------------------------------------------------------------------
           Cape golden mole  ----------------------------------------------------------------------
                     Tenrec  ----------------------------------------------------------------------
                   Aardvark  ----------------------------------------------------------------------
                  Armadillo  ----------------------------------------------------------------------
     Lesser Egyptian jerboa  ----------------------------------------------------------------------
                 Guinea pig  ======================================================================
                   Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                    Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Pig  ----------------------------------------------------------------------
                      Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ======================================================================
                    Opossum  ======================================================================
                   Platypus  ======================================================================
         American alligator  ======================================================================

                      Human  ---------gtt
                  Orangutan  ---------gtt
                     Gibbon  ---------gtt
                     Rhesus  ---------gtt
        Crab-eating macaque  ---------gtt
                     Baboon  ---------gtt
               Green monkey  ---------gtt
                   Marmoset  ---------gtt
            Squirrel monkey  ---------gtt
                   Bushbaby  ---------ctt
         Chinese tree shrew  ---------gtc
                   Squirrel  ---------gct
               Prairie vole  ---------gct
            Chinese hamster  ---------gtt
             Golden hamster  ---------gtt
                      Mouse  ---------gtt
                        Rat  ---------gtt
             Naked mole-rat  ---------gcc
                 Chinchilla  ---------gtt
           Brush-tailed rat  ---------gct
                     Rabbit  ---------gtt
                       Pika  ---------gtt
                     Alpaca  ---------gtt
             Bactrian camel  ---------gtt
                    Dolphin  ---------gtt
               Killer whale  ---------gtt
           Tibetan antelope  ---------gtt
                        Cow  ---------gtt
                      Sheep  ---------gtt
              Domestic goat  ---------gtt
                      Horse  ---------gtt
           White rhinoceros  ---------ctt
                        Cat  ---------gtc
                        Dog  ---------gtt
                    Ferret   ---------gtt
                      Panda  ---------gtt
             Pacific walrus  ---------gtt
               Weddell seal  ---------gtt
           Black flying-fox  ---------gat
                    Megabat  ---------gat
              Big brown bat  ---------gac
       David's myotis (bat)  ---------gat
                   Microbat  ---------gat
                   Hedgehog  acacactgcttc
                      Shrew  ---------ctt
            Star-nosed mole  ---------atg
        Cape elephant shrew  ---------gtt
                    Manatee  ---------gtt
           Cape golden mole  ---------gct
                     Tenrec  ---------gcc
                   Aardvark  ---------gtt
                  Armadillo  ---------ttt
     Lesser Egyptian jerboa  ------------
                 Guinea pig  ============
                   Elephant  NNNNNNNNNNNN
                    Gorilla  NNNNNNNNNNNN
                        Pig  ------------
                      Chimp  NNNNNNNNNNNN
            Tasmanian devil  ============
                    Opossum  ============
                   Platypus  ============
         American alligator  ============

Alignment block 17 of 118 in window, 140712316 - 140712352, 37 bps 
B D                   Human  tcaggtgtgctattc--------ctcttag--gcgcacctgatatcc
B D               Orangutan  tcaggtgtgctattc--------ctcttgg--gcacacctgatatcc
B D                  Gibbon  tcaggtgtgctattc--------ctcttgg--gcacacctgatatcc
B D                  Rhesus  tcaggtgtgctattc--------ctcttgg--gcacacctgatatcc
B D     Crab-eating macaque  tcaggtgtgctattc--------ctcttgg--gcacacctgatatcc
B D                  Baboon  tcaggtgtgctattc--------ctcttgg--gcacacctgatatcc
B D            Green monkey  tcaggtgtgctatta--------ctcttgg--gcacacctgatatcc
B D                Marmoset  tgaggtgtgctattc--------ctcttgg--gcacacctgatatcc
B D         Squirrel monkey  tgaggtgtgctattc--------ctcttgg--g--cacctgatatcc
B D                Bushbaby  ccagatgtgccattc--------ctctcgg--acacacctgacatct
         Chinese tree shrew  ccagatgtgttcttc--------ctcttgg--acacaccagacctct
B D                Squirrel  ctagatgtgctagt---------cccttgg--acacaactaacaacc
               Prairie vole  ccagatggtattc----------cttttgg--atgctcttgacattc
B D         Chinese hamster  ccagatgtgattt----------cttttgg--atgctcctgatattc
             Golden hamster  ccagatgttat-------------ttttgg--atgctcctgacattc
B D                   Mouse  ccaggtgttaactgtttttttttttttttg--atgattctgacattc
B D                     Rat  tcaggtgttaactg---------tttttgg--atgcttttaacattt
B D          Naked mole-rat  ccagatgtggtattc--------ctcttgg--acaca-gtgagggcc
B D              Guinea pig  tcagatgtggtattc----------tctgg--acacatgtgagggcc
                 Chinchilla  ccacatgtggtattc--------cttttgg--acacaagtaagggcc
           Brush-tailed rat  ccagatgtggtgttc--------gtcttag--acacacatgagatcc
B D                  Rabbit  ccagatgtgttattc--------ctcttag--acacagctgacactc
B D                    Pika  -cagatgtgttattc--------ctcatag--acacagctgatacct
B D                     Pig  -----tgtgctgttc--------ctcgcag--acccagctgacagcc
B D                  Alpaca  ccaggtgtgctatgc--------ctcttgg--acacagctgacatct
             Bactrian camel  ccaggtgtgctatgc--------ctcttgg--acacagctgacatct
B D                 Dolphin  ccagatgtactattc--------cacttgc--acacagctgacagcc
               Killer whale  ccagatgtactattc--------cacttgc--acacagctgacagcc
           Tibetan antelope  ccagatgtgctattc--------ctcctag--acacagctgacagcc
B D                     Cow  ccagatgtgctattc--------ctcctag--acacagctgacagcc
B D                   Sheep  ccagatgtgctattc--------ctcctag--acacagctgacagcc
              Domestic goat  ccagatgtgcaattc--------ctcctag--acacagctgacagcc
B D                   Horse  ccagatgggctattc--------ctcttgg--acacacttgacatcc
B D        White rhinoceros  ccagatgtgctattc--------ctcttgg--acacacctgacatcc
B D                     Cat  ccagatgtcctattc--------cccttgg--acacagttggcatcc
B D                     Dog  ccagatatgctattc--------ctcttgg--acacagttggcatcc
B D                 Ferret   ccagatgtgctattc--------ctcttgg--acacagctggcattc
B D                   Panda  ccagatgtgctattc--------ctcttga--acacagttggcatcc
             Pacific walrus  ccagatgtgctattc--------ctcttgg--acacagttggcatcc
               Weddell seal  ccagatgtgctattc--------ctcttgg--acacagttggcatcc
           Black flying-fox  ccagatgtgctgttc--------ctcttag--acacaccagacattc
B D                 Megabat  ccagatgtgctgttc--------ctcttag--acacaccagacattc
              Big brown bat  ccagatgtgctattc--------ctcttag--acacacctga-attc
       David's myotis (bat)  ccagacgtgctactc--------ctcttag--acacacctga-attc
B D                Microbat  ccagacgtgctattc----------cttag--acacacctga-attc
B D                Hedgehog  ccagatgtgctagtc--------accttggacacaaatctgatatcc
B D                   Shrew  cccgaggtgctgttc--------ctcttgg--acaaacctgacaccc
            Star-nosed mole  ccagatgtgctgt----------------------------------
        Cape elephant shrew  ttcaagctgctg-cc--------ctcgtgg--atacacctggcatgg
B D                 Manatee  cttgatttgctg-tc--------ttt-tgg--gcacagctgacatga
           Cape golden mole  ctcaatttgctg-ct--------gtc-t-------------------
B D                  Tenrec  ctcaatttgctc-cc--------ctg-tag--acgcacttgatgtga
                   Aardvark  gttggttctctg-cc--------ctcttgg--acacaactgacgtga
B D               Armadillo  ccagatatgctcttc--------ctcttgg--acacacctgacatcc
    Lesser Egyptian jerboa  -----------------------------------------------
B D                Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D         Tasmanian devil  ===============================================
B D                 Opossum  ===============================================
B D                Platypus  ===============================================
B D      American alligator  ===============================================

Alignment block 18 of 118 in window, 140712353 - 140712390, 38 bps 
B D                   Human  caatt-gtgtg-tt--aaa------------aa------aaaaaa--tac-cc-----------ccggg-
B D               Orangutan  caatt-gtgtgttt--aaa------------aa------aaaaaa--tac-cc-----------cc-gg-
B D                  Gibbon  caatt-gtatg-ttaaaaa------------aa------aaaaaa--tac-cc-----------ccggg-
B D                  Rhesus  caatc-gtgtg-tt--aaa------------aa------aaaaaa--tgc-cc-----------ccggg-
B D     Crab-eating macaque  caatc-gtgcg-tt-aaaa------------aa------aaaaaa--tgc-cc-----------ccggg-
B D                  Baboon  caatt-gtgtg-tt----a------------aa------aaaaaa--tgc-cc-----------ccggg-
B D            Green monkey  caatt-gtgtg-tt----a------------aa------aaaaaa--tgc-cc-----------ccggg-
B D                Marmoset  caaat-gtgtg-tt------------------t------aaaaaa--tgc-cc-----------ccagg-
B D         Squirrel monkey  caatt-gtgtgttt------------------t------aaaaaa--tgc-cc-----------ccagg-
B D                Bushbaby  caatt-atgtg-tt----t------------aa------aaaaga--tat-tc-----------cccag-
         Chinese tree shrew  caatc-atgta-tt-----------------tt------aaaaaa--tac-cc-----------cccag-
B D                Squirrel  caatt-gtgtg-tt----t------------aa------aaagaaataac-tc-----------catgt-
     Lesser Egyptian jerboa  caatt-gtgtg-ct----t------------aa------aatgaaat-at-cc-----------cagga-
               Prairie vole  cagtt-gtgcg-tt----t------------aa------aaagta----c-tt-----------caggg-
B D         Chinese hamster  cagtt-gtatg-tt----t------------aa------aaagta----t-tt-----------caggg-
             Golden hamster  caatt-ttgag-tt----t------------aa------gaagta----c-tt-----------gaggg-
B D                   Mouse  cagtt-gtgta-tt----t------------aa------aaggaagt-ac-tg-----------aaggg-
B D                     Rat  cagtt-gtgtg-tt----t------------aa------aaagga----------------------ag-
B D          Naked mole-rat  caact-gtgtg-tt----t------------aa------aagggg------ac-----------tggtg-
B D              Guinea pig  cagct-gttta-tt----t------------aa------aagggg------ac-----------tagtg-
                 Chinchilla  cagct-ttttg-tt----t------------aa------aagggg------ac-----------tagtg-
           Brush-tailed rat  cagct-gtttg-tt----t------------aa------aaagag------ac-----------tagcg-
B D                  Rabbit  caaat-atgtg-tt----t------------aa------aacaga--tat-cc-----------caggg-
B D                    Pika  caaat-atgtg-tt----t------------ta------aacaaa--tat-cc-----------caggg-
B D                     Pig  tagtt-gcgta-gt----c------------aa------ataaga----cgcc-----------ccagg-
B D                  Alpaca  taat-------------------------------------aatg----c-cc-----------tcagg-
             Bactrian camel  taat-------------------------------------aatg----c-cc-----------tcagg-
B D                 Dolphin  taagt-gtgtg-tt----c------------aa------ataata----c-tc-----------ccggg-
               Killer whale  taagt-gtgtg-tt----c------------aa------ataata----c-tc-----------ccggg-
           Tibetan antelope  taatt-gtgta-gt----c------------aa------acaata----c-tc-----------ctggg-
B D                     Cow  taatt-gtgta-gt----c------------aa------acaata----c-tc-----------ctggg-
B D                   Sheep  taatt-gtgta-gt----c------------aa------acaata----c-tc-----------ctggg-
              Domestic goat  taatt-gtgta-gt----c------------aa------acaata----c-tc-----------ctggg-
B D                   Horse  taatt-gtgtg-tt----c------------ga------aactca----c-cc-----------ccagg-
B D        White rhinoceros  taatt-gtgtg-tt----c------------aa------aactta----c-cc-----------ccagg-
B D                     Cat  taatt-gtggg-tt----c------------aa------aacata----c-cccccacccc---ccggg-
B D                     Dog  taatt-gtatg-tt----c------------ga------aatccc----c-ccccccccccacaccagg-
B D                 Ferret   taatt-gtgtg-tt----c------------aa------aactta----c-cc-----------ccaggg
B D                   Panda  taatt-gtgtg-tt--------------------------agtaa----c-cc-----------cccgg-
             Pacific walrus  taatt-gtgtg-tt----t------------aa------aactta----c-cc-----------ctggg-
               Weddell seal  taatt-gtgtg-tt----t------------aa------aacttc----c-cc-----------ccggg-
           Black flying-fox  taatt-gtgtg-tt----c--------a---aa------aaagta----c-cc-----------ccagg-
B D                 Megabat  taatt-gtgtg-tt----c--------a---aa------aaaata----c-cc-----------ccagg-
              Big brown bat  taatt-ttgtg-tt----a--------a---aa------aaaata----c-cc-----------cttgg-
       David's myotis (bat)  taatt-tcgtg-tt----c--------a---aa------aaaata----c-cc-----------cttgg-
B D                Microbat  taatt-ttgtg-tt----c--------a---aa------aaaata----c-cc-----------cttgg-
B D                Hedgehog  acatt-gtgta-tt----c------------caaacgg-aaatgg----c-tc-----------ctggg-
B D                   Shrew  tcact-gtgtg-tt----a------------aaatctagaaaaga----t-cc-----------ctggg-
            Star-nosed mole  ----t-gtgtg-tt----g------------ca------aaaaat----g-cc-----------tccag-
        Cape elephant shrew  tggtt-ttgta-tt----attaacgaca---gt------aaaagc----a-ct-----------ctggg-
B D                 Manatee  caatt-gtgta-tt----accaccaaca---ac------agaaat----a-cc-----------ctggg-
           Cape golden mole  ------------tt----acctccaccaccacc------caaaat----a-tc-----------ctggg-
B D                  Tenrec  tggttcatgta-tt----accgacataac--cc------ccaaat----g-cc-----------ccggg-
                   Aardvark  ccatt-gcgta-tt----agcaacagtg---ac------agaaat----g-tc-----------ctggg-
B D               Armadillo  tgata-gtgtg-tt----a--------------------aaaaaa----a-tt-----------ccgtg-
B D                Elephant  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Chimp  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D         Tasmanian devil  ======================================================================
B D                 Opossum  ======================================================================
B D                Platypus  ======================================================================
B D      American alligator  ======================================================================

                      Human  ---gttaa------------
                  Orangutan  ---gttaa------------
                     Gibbon  ---gttaa------------
                     Rhesus  ---gttaa------------
        Crab-eating macaque  ---gttaa------------
                     Baboon  ---gttaa------------
               Green monkey  ---gttaa------------
                   Marmoset  ---gttaa------------
            Squirrel monkey  ---gttaa------------
                   Bushbaby  ---gtgag------------
         Chinese tree shrew  ---gttag------------
                   Squirrel  ---gtggg------------
     Lesser Egyptian jerboa  ---gttaa------------
               Prairie vole  ---attaa------------
            Chinese hamster  ---gctaa------------
             Golden hamster  ---gttaa------------
                      Mouse  ---gttaa------------
                        Rat  ---gttaa------------
             Naked mole-rat  ---gcctt------------
                 Guinea pig  ---gccat------------
                 Chinchilla  ---gccat------------
           Brush-tailed rat  ---gccat------------
                     Rabbit  ---atcag------------
                       Pika  ---atcaa------------
                        Pig  ---gttag------------
                     Alpaca  ---gttag------------
             Bactrian camel  ---gttag------------
                    Dolphin  ---gttcg------------
               Killer whale  ---gttcg------------
           Tibetan antelope  ---gttag------------
                        Cow  ---gttag------------
                      Sheep  ---gttag------------
              Domestic goat  ---gttag------------
                      Horse  ---gttag------------
           White rhinoceros  ---gttag------------
                        Cat  ---gttag------------
                        Dog  ---gttag------------
                    Ferret   tcagttag------------
                      Panda  ---gttag------------
             Pacific walrus  ---gttag------------
               Weddell seal  ---gttag------------
           Black flying-fox  ---gttag------------
                    Megabat  ---gttag------------
              Big brown bat  ---gttag------------
       David's myotis (bat)  ---gttag------------
                   Microbat  ---gttag------------
                   Hedgehog  ---attag------------
                      Shrew  ---gttag------------
            Star-nosed mole  ---gttag------------
        Cape elephant shrew  ---cctagtgatagcccaga
                    Manatee  ----ttagcactagccctaa
           Cape golden mole  ---gttagcgctagccctca
                     Tenrec  ---gttagcactagccctaa
                   Aardvark  ---gtaagcgctagccatac
                  Armadillo  ---gttagtgctagccacaa
                   Elephant  NNNNNNNNNNNNNNNNNNNN
                    Gorilla  NNNNNNNNNNNNNNNNNNNN
                      Chimp  NNNNNNNNNNNNNNNNNNNN
            Tasmanian devil  ====================
                    Opossum  ====================
                   Platypus  ====================
         American alligator  ====================

Inserts between block 18 and 19 in window
B D               Squirrel 12bp
B D                  Mouse 7bp
B D         Naked mole-rat 5bp
B D             Guinea pig 6bp
                Chinchilla 5bp
          Brush-tailed rat 5bp
B D                 Rabbit 12bp
B D                   Pika 13bp

Alignment block 19 of 118 in window, 140712391 - 140712391, 1 bps 
B D                   Human  -a
B D               Orangutan  -a
B D                  Gibbon  -a
B D                  Rhesus  -a
B D     Crab-eating macaque  -a
B D                  Baboon  -a
B D            Green monkey  -a
B D                Marmoset  -a
B D         Squirrel monkey  -a
B D                Bushbaby  -t
         Chinese tree shrew  -t
B D                Squirrel  -t
     Lesser Egyptian jerboa  -t
               Prairie vole  -t
B D         Chinese hamster  -t
             Golden hamster  -t
B D          Naked mole-rat  -g
B D              Guinea pig  -a
                 Chinchilla  -g
           Brush-tailed rat  -g
B D                  Rabbit  -g
B D                    Pika  -g
B D                     Pig  -g
B D                  Alpaca  -t
             Bactrian camel  -t
B D                 Dolphin  -t
               Killer whale  -t
           Tibetan antelope  -t
B D                     Cow  -t
B D                   Sheep  -t
              Domestic goat  -t
B D                   Horse  -t
B D        White rhinoceros  -t
B D                     Cat  -t
B D                     Dog  -t
B D                 Ferret   -t
B D                   Panda  -t
             Pacific walrus  -t
               Weddell seal  -t
           Black flying-fox  -t
B D                 Megabat  -t
              Big brown bat  -t
       David's myotis (bat)  -t
B D                Microbat  -t
B D                Hedgehog  -t
B D                   Shrew  -t
            Star-nosed mole  -t
        Cape elephant shrew  a-
B D                 Manatee  g-
           Cape golden mole  a-
B D                  Tenrec  a-
                   Aardvark  a-
B D               Armadillo  g-
B D                     Rat  --
B D                   Mouse  ==
B D                Elephant  NN
B D                 Gorilla  NN
B D                   Chimp  NN
B D         Tasmanian devil  ==
B D                 Opossum  ==
B D                Platypus  ==
B D      American alligator  ==

Inserts between block 19 and 20 in window
B D        Squirrel monkey 108bp
B D               Bushbaby 12bp
        Chinese tree shrew 12bp
B D                    Dog 3bp
B D                 Tenrec 1bp

Alignment block 20 of 118 in window, 140712392 - 140712406, 15 bps 
B D                   Human  gttcctcct----------tcaacc
B D               Orangutan  gttcctcct----------tcaacc
B D                  Gibbon  gttcctcct----------tcaacc
B D                  Rhesus  gttcctcct----------tcaacc
B D     Crab-eating macaque  gttcctcct----------tcaacc
B D                  Baboon  gttcctcct----------tcaacc
B D            Green monkey  gttcctcct----------tcaacc
B D                Marmoset  gtttctcct----------tcaacc
B D                Bushbaby  cttcctcct----------tcatcc
         Chinese tree shrew  gttcctcct----------tcaatc
B D                Squirrel  gttagtcct----------------
     Lesser Egyptian jerboa  gttagtcct----------------
               Prairie vole  gcttgtcct----------------
B D         Chinese hamster  gcttgtcct----------------
             Golden hamster  gcttgtcct----------------
B D                     Rat  -----tgca----------------
B D          Naked mole-rat  gctcctctt----------tcaacc
B D              Guinea pig  gctcctc-t----------tcaacc
                 Chinchilla  gctcctctt----------tcaacc
           Brush-tailed rat  gctcctctt----------tcaacc
B D                  Rabbit  gttcctcct----------tcaacc
B D                    Pika  attcttcct----------tcaacc
B D                     Pig  gttattctt----------aaagtt
B D                  Alpaca  gttattcct----------aaaatt
             Bactrian camel  gttattcct----------aaagtt
B D                 Dolphin  gttattcctaacactattgaaagtt
               Killer whale  gttattcctaacactattgaaagtt
           Tibetan antelope  gttattcct----------aaagtt
B D                     Cow  gttattcct----------aaagtt
B D                   Sheep  gttattcct----------aaagtt
              Domestic goat  gttattcct----------aaagtt
B D                   Horse  gttacttct----------aaggtt
B D        White rhinoceros  gttactcc---------------tt
B D                     Cat  gttactggt----------aaggtt
B D                     Dog  gttactcct----------aaggtt
B D                 Ferret   gttactcct----------atgatt
B D                   Panda  gttactcct----------aaggtt
             Pacific walrus  gttactcct----------aaggtt
               Weddell seal  gttactcct----------aaggtt
           Black flying-fox  attactcct----------aaggtt
B D                 Megabat  attactcct----------aaggtt
              Big brown bat  gttactctt----------aaggtt
       David's myotis (bat)  gttactcct----------aaggtt
B D                Microbat  gttactcct----------aaggtt
B D                Hedgehog  gtcactcct----------aaaact
B D                   Shrew  gttattcct----------caggtt
            Star-nosed mole  gtttctgct----------aaggtt
        Cape elephant shrew  gttcctcct----------gcagcc
B D                 Manatee  gttcctctt----------taaacc
           Cape golden mole  gttcctcct----------tcaaat
B D                  Tenrec  gttcctctg----------tcagcc
                   Aardvark  gctccttct----------tcatcc
B D               Armadillo  gttctccct----------tcaacc
B D                   Mouse  =========================
B D                Elephant  NNNNNNNNNNNNNNNNNNNNNNNNN
B D         Squirrel monkey  =========================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNN
B D                   Chimp  NNNNNNNNNNNNNNNNNNNNNNNNN
B D         Tasmanian devil  =========================
B D                 Opossum  =========================
B D                Platypus  =========================
B D      American alligator  =========================

Inserts between block 20 and 21 in window
B D               Squirrel 21bp
    Lesser Egyptian jerboa 26bp
              Prairie vole 4bp
B D        Chinese hamster 4bp
            Golden hamster 4bp
B D                    Rat 2bp

Alignment block 21 of 118 in window, 140712407 - 140712419, 13 bps 
B D                   Human  tc------------------ttttttttttt
B D               Orangutan  tcttttttttttttttttttttttttttttt
B D                  Gibbon  tc-------------------------tttt
B D                  Rhesus  tc----------------------------t
B D     Crab-eating macaque  tc----------------------------t
B D                  Baboon  tc----------------------------t
B D            Green monkey  tc----------------------------t
B D                Marmoset  ----------------------tcttttttt
B D         Squirrel monkey  ------------------ttttttttttttt
B D                Bushbaby  -----------------------------tc
         Chinese tree shrew  -----------------------------tc
B D          Naked mole-rat  -------------------------tctttt
B D              Guinea pig  -------------------------tctttt
                 Chinchilla  -------------------------tctttt
           Brush-tailed rat  -------------------------tctttt
B D                  Rabbit  -------------------------tc----
B D                    Pika  -------------------------tg----
B D                     Pig  -----------------------cttccttc
B D                  Alpaca  -----------------------cctccttc
             Bactrian camel  -----------------------cctccttc
B D                 Dolphin  -----------------------cctccttc
               Killer whale  -----------------------cctccttc
           Tibetan antelope  -----------------------cttccttc
B D                     Cow  -----------------------cctccttc
B D                   Sheep  -----------------------cctccttc
              Domestic goat  -----------------------cctccttc
B D                   Horse  -----------------------cttccttc
B D        White rhinoceros  -----------------------actccttc
B D                     Cat  -----------------------cctccttc
B D                     Dog  -----------------------cctccttc
B D                 Ferret   -----------------------ccttcttc
B D                   Panda  -----------------------cctccttc
             Pacific walrus  -----------------------cctccttc
               Weddell seal  -----------------------cctccttc
           Black flying-fox  -----------------------ctttcttc
B D                 Megabat  -----------------------ctttcttc
              Big brown bat  -----------------------cttccttc
       David's myotis (bat)  -----------------------cttccttc
B D                Microbat  -----------------------cttccttc
B D                Hedgehog  -----------------------attccttc
B D                   Shrew  -----------------------a---cttc
            Star-nosed mole  -----------------------a---ctcc
        Cape elephant shrew  -----------------------------tc
B D                 Manatee  -----------------------------tc
           Cape golden mole  -----------------------------tc
B D                  Tenrec  -----------------------------tc
                   Aardvark  -----------------------------tc
B D               Armadillo  -----------------------------tc
B D                     Rat  ===============================
            Golden hamster  ===============================
B