Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 384 in window, 133308889 - 133308892, 4 bps 
B D                     Human  ccg-----------g
B D                     Chimp  ccg-----------g
B D                   Gorilla  ccg-----------g
B D                 Orangutan  cct-----------g
B D                    Gibbon  ccg-----------g
B D       Crab-eating macaque  ccg-----------g
B D                    Baboon  ccg-----------g
B D              Green monkey  ccg-----------g
B D                  Marmoset  ccg-----------g
B D                  Bushbaby  ccggcccc------g
           Chinese tree shrew  ccggccccgcctgtg
B D                  Squirrel  ccg-----------g
       Lesser Egyptian jerboa  ccg-----------t
                 Prairie vole  ccg-----------t
               Golden hamster  ccg-----------t
B D                     Mouse  ccg-----------t
B D                       Rat  ccg-----------t
B D            Naked mole-rat  ccg-----------g
B D                Guinea pig  ccg-----------g
                   Chinchilla  ccg-----------g
             Brush-tailed rat  ccg-----------g
B D                       Pig  ccg-----------g
B D                   Dolphin  ccg-----------g
                 Killer whale  ccg-----------g
B D          White rhinoceros  ccg-----------g
               Pacific walrus  ccg-----------g
                 Weddell seal  ccg-----------g
B D                   Megabat  ccg-----------g
                Big brown bat  ccg-----------g
B D                  Microbat  ccg-----------g
B D                  Hedgehog  ccg-----------g
B D                     Shrew  ctg-----------g
B D                  Elephant  ccg-----------g
B D                   Manatee  ccg-----------g
             Cape golden mole  ccg-----------c
                     Aardvark  ccg-----------g
B D                   Opossum  gca-----------a
B D           Tasmanian devil  ccg-----------g
B D                   Wallaby  cca-----------g
B D                  Platypus  cgg-----------g
  D              Saker falcon  --------------g
  D          Peregrine falcon  --------------g
  D       Collared flycatcher  --------------g
B D       Medium ground finch  --------------g
B D               Zebra finch  --------------g
B D        American alligator  --------------g
  D           Green seaturtle  --------------a
  D            Painted turtle  --------------g
  D  Chinese softshell turtle  --------------g
B D                 Tetraodon  ---------------
B D               Stickleback  ---------------
               Domestic goat  ===============
B D                     Sheep  ===============
B D                       Cow  ===============
            Tibetan antelope  ===============
        David's myotis (bat)  ===============
              Bactrian camel  ===============
B D                    Alpaca  ===============
B D                     Panda  ===============
B D                       Dog  ===============
B D           Chinese hamster  ===============
B D                   Ferret   ===============
B D                       Cat  ===============
B D                    Rabbit  ===============
B D                 Armadillo  ===============
B D                    Tenrec  ===============
B D                     Horse  ===============
            Black flying-fox  ===============
         Princess of Burundi  ===============
B D              Nile tilapia  ===============
B D                      Fugu  ===============
      Yellowbelly pufferfish  ===============
                 Zebra mbuna  ===============
B D                Coelacanth  ===============
                 Spotted gar  ===============
    Mexican tetra (cavefish)  ===============
          Southern platyfish  ===============
B D             X. tropicalis  ===============
B D                Budgerigar  ===============
  D             Scarlet macaw  ===============
  D    White-throated sparrow  ===============
B D                    Turkey  ===============
B D                   Chicken  ---------------
B D                    Lizard  ===============
B D           Squirrel monkey  ===============
          Tibetan ground jay  ===============
  D               Rock pigeon  ===============
B D                   Lamprey  ===============
  D              Mallard duck  ===============
B D                    Rhesus  NNNNNNNNNNNNNNN

Inserts between block 1 and 2 in window
      Lesser Egyptian jerboa 1bp
                Prairie vole 1bp
              Golden hamster 1bp
B D                    Mouse 1bp
B D                      Rat 1bp
B D           Naked mole-rat 1bp
B D               Guinea pig 1bp
                  Chinchilla 1bp
            Brush-tailed rat 1bp
B D                  Opossum 4bp
B D          Tasmanian devil 5bp
B D                  Wallaby 7bp
B D                 Platypus 3bp
  D             Saker falcon 6bp
  D         Peregrine falcon 6bp
  D      Collared flycatcher 10bp
B D      Medium ground finch 7bp
B D              Zebra finch 17bp
B D       American alligator 17bp
  D          Green seaturtle 22bp
  D           Painted turtle 24bp
  D Chinese softshell turtle 24bp
B D                Tetraodon 2bp
B D              Stickleback 2bp

Alignment block 2 of 384 in window, 133308893 - 133308894, 2 bps 
B D                     Human  ct-
B D                     Chimp  ct-
B D                   Gorilla  ct-
B D                 Orangutan  ct-
B D                    Gibbon  ct-
B D       Crab-eating macaque  ct-
B D                    Baboon  ct-
B D              Green monkey  ct-
B D                  Marmoset  cc-
B D                  Bushbaby  cc-
           Chinese tree shrew  cc-
B D                  Squirrel  ct-
       Lesser Egyptian jerboa  tt-
                 Prairie vole  cc-
B D           Chinese hamster  cc-
               Golden hamster  cc-
B D                     Mouse  ac-
B D                       Rat  ac-
B D            Naked mole-rat  cc-
B D                Guinea pig  cc-
                   Chinchilla  cc-
             Brush-tailed rat  cc-
B D                       Pig  cc-
B D                   Dolphin  cc-
                 Killer whale  cc-
B D          White rhinoceros  cc-
               Pacific walrus  cc-
                 Weddell seal  cc-
B D                   Megabat  cc-
                Big brown bat  cc-
B D                  Microbat  cc-
B D                  Hedgehog  cc-
B D                     Shrew  cg-
B D                  Elephant  ct-
B D                   Manatee  ct-
             Cape golden mole  ct-
                     Aardvark  ct-
B D                   Opossum  cg-
B D           Tasmanian devil  ca-
B D                   Wallaby  ct-
B D                  Platypus  tt-
  D              Saker falcon  c--
  D          Peregrine falcon  c--
  D       Collared flycatcher  t--
B D       Medium ground finch  c--
B D               Zebra finch  c--
           Tibetan ground jay  c--
B D                    Turkey  t--
B D        American alligator  c--
  D           Green seaturtle  c--
  D            Painted turtle  a--
  D  Chinese softshell turtle  a--
B D                    Lizard  t--
B D                 Tetraodon  -ct
B D               Stickleback  -tt
               Domestic goat  ===
B D                     Sheep  ===
B D                       Cow  ===
            Tibetan antelope  ===
        David's myotis (bat)  ===
              Bactrian camel  ===
B D                    Alpaca  ===
B D                     Panda  ===
B D                       Dog  ===
B D                   Ferret   ===
B D                       Cat  ===
B D                    Rabbit  ===
B D                 Armadillo  ===
B D                    Tenrec  ===
B D                     Horse  ===
            Black flying-fox  ===
         Princess of Burundi  ===
B D              Nile tilapia  ===
B D                      Fugu  ===
      Yellowbelly pufferfish  ===
                 Zebra mbuna  ===
B D                Coelacanth  ===
                 Spotted gar  ===
    Mexican tetra (cavefish)  ===
          Southern platyfish  ===
B D             X. tropicalis  ===
B D                Budgerigar  ===
  D             Scarlet macaw  ===
  D    White-throated sparrow  ===
B D                   Chicken  ---
B D           Squirrel monkey  ===
  D               Rock pigeon  ===
B D                   Lamprey  ===
  D              Mallard duck  ===
B D                    Rhesus  NNN

Inserts between block 2 and 3 in window
B D                      Pig 15bp
B D                  Dolphin 10bp
                Killer whale 10bp
B D         White rhinoceros 10bp
              Pacific walrus 4bp
                Weddell seal 4bp
B D                  Megabat 10bp
               Big brown bat 5bp
B D                 Microbat 5bp

Alignment block 3 of 384 in window, 133308895 - 133308912, 18 bps 
B D                     Human  c-------ggctcgcg-----------gacggtggc
B D                     Chimp  c-------ggctcgcg-----------gacggtggc
B D                   Gorilla  c-------ggctcgcg-----------gacggtggc
B D                 Orangutan  c-------ggatcgcg-----------gacggtggc
B D                    Gibbon  c-------ggctcgtg-----------gacggtggc
B D       Crab-eating macaque  c-------ggctggcg-----------gacggtggc
B D                    Baboon  c-------ggctggcg-----------gacggtggc
B D              Green monkey  c-------ggctggcg-----------gacggtggc
B D                  Marmoset  c-------ggctggcg-----------gacggtggc
B D                  Bushbaby  c-------ggctcatg-----------gacggtggc
           Chinese tree shrew  c-------gactctcg-----------gacggtggc
B D                  Squirrel  c-------cgcctgcg-----------gatggtggc
       Lesser Egyptian jerboa  c-------gccctgcg-----------gacggtggc
                 Prairie vole  c-------gccccgcc-----------gacggtggc
B D           Chinese hamster  c-------gccccgcc-----------gacggtggc
               Golden hamster  c-------gccccgcg-----------gacggtggc
B D                     Mouse  c-------acccctcc-----------gacggtggc
B D                       Rat  c-------acccctcc-----------gacggtggc
B D            Naked mole-rat  c-------gccccgcg-----------gacggtggc
B D                Guinea pig  c-------gccccccg-----------aacggcggc
                   Chinchilla  c-------g-cccgcg-----------agctcctgc
             Brush-tailed rat  g-------t-ggtggg-----------gacggcggc
B D                       Pig  c-------gacgtgcg-----------gacggtggc
B D                   Dolphin  c-------ggctggcg-----------gacggtggc
                 Killer whale  c-------ggctggcg-----------gacggtggc
B D          White rhinoceros  c-------ggcccaca-----------gaccttggc
B D                     Panda  c-------ggctcgcg-----------gacggtggc
               Pacific walrus  c-------cgctcgcg-----------gacggcggc
                 Weddell seal  c-------cgctcgca-----------gacggtggc
B D                   Megabat  g-------ggctcgcg-----------gacggtggc
                Big brown bat  c-------agctcgtg-----------gacggtggc
B D                  Microbat  a-------agctcgtg-----------gacggtggc
B D                  Hedgehog  c-------cgctttgg-----------gacgggggc
B D                     Shrew  t-------cacttccg-----------gccggg---
B D                  Elephant  -------------ccg-----------gacggtggc
B D                   Manatee  -------------ccg-----------gacggtggc
             Cape golden mole  -------------ccg-----------gacggtggc
                     Aardvark  -------------ccg-----------gccggcggc
B D                   Opossum  cgcctcaaggctgggg-----------gggggattt
B D           Tasmanian devil  c-------aacccgga-----------agcggttct
B D                   Wallaby  g-------ggcggtgg-----------gggggtgct
B D                  Platypus  c-------ggggcctt-----------gaagggggc
  D              Saker falcon  -------------cca-----------ccccagtgc
  D          Peregrine falcon  -------------cca-----------ccccagtgc
  D       Collared flycatcher  -------------gcc-----------ccccggctc
B D       Medium ground finch  -------------cct-----------gtccggtgc
B D               Zebra finch  -------------ccg-----------cgcaggcgc
           Tibetan ground jay  -------------cca-----------ttccgtccc
B D                    Turkey  -------------gcg-----------gtctgggtc
B D        American alligator  -------------ctc-----------tccccgccc
  D           Green seaturtle  -------------tct-----------ccccggctc
  D            Painted turtle  -------------tcttcccgttc---ccctggccc
  D  Chinese softshell turtle  -------------tct----gatc---ccccgg---
B D                    Lizard  -------------ctt-----------ttccgtctc
B D                 Tetraodon  --------------cg-----------gacaaggtg
B D               Stickleback  --------------cg----ggttcccggcgaagag
               Domestic goat  ====================================
B D                     Sheep  ====================================
B D                       Cow  ====================================
            Tibetan antelope  ====================================
        David's myotis (bat)  ====================================
              Bactrian camel  ====================================
B D                    Alpaca  ====================================
B D                       Dog  ====================================
B D                   Ferret   ====================================
B D                       Cat  ====================================
B D                    Rabbit  ====================================
B D                 Armadillo  ====================================
B D                    Tenrec  ====================================
B D                     Horse  ====================================
            Black flying-fox  ====================================
         Princess of Burundi  ====================================
B D              Nile tilapia  ====================================
B D                      Fugu  ====================================
      Yellowbelly pufferfish  ====================================
                 Zebra mbuna  ====================================
B D                Coelacanth  ====================================
                 Spotted gar  ====================================
    Mexican tetra (cavefish)  ====================================
          Southern platyfish  ====================================
B D             X. tropicalis  ====================================
B D                Budgerigar  ====================================
  D             Scarlet macaw  ====================================
  D    White-throated sparrow  ====================================
B D                   Chicken  ------------------------------------
B D           Squirrel monkey  ====================================
  D               Rock pigeon  ====================================
B D                   Lamprey  ====================================
  D              Mallard duck  ====================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 3 and 4 in window
B D                    Shrew 27bp
B D                  Opossum 4bp
B D          Tasmanian devil 4bp
B D                  Wallaby 5bp
  D             Saker falcon 1bp
  D         Peregrine falcon 1bp
  D      Collared flycatcher 1bp
B D      Medium ground finch 1bp
  D          Green seaturtle 1bp
  D           Painted turtle 1bp
B D                   Lizard 1bp

Alignment block 4 of 384 in window, 133308913 - 133308919, 7 bps 
B D                     Human  --cgacagg
B D                     Chimp  --cgacaag
B D                   Gorilla  --cgacagg
B D                 Orangutan  --cgacagg
B D                    Gibbon  --cgacagg
B D       Crab-eating macaque  --cgacagg
B D                    Baboon  --cgacagg
B D              Green monkey  --cgacagg
B D                  Marmoset  --cgactgg
B D                  Bushbaby  --ctgcgg-
           Chinese tree shrew  --cgacagg
B D                  Squirrel  --cgacggg
       Lesser Egyptian jerboa  --cgatcag
                 Prairie vole  --cgaaggg
B D           Chinese hamster  --cgaaggg
               Golden hamster  --cgaaggg
B D                     Mouse  --cgaaggg
B D                       Rat  --cgaaggg
B D            Naked mole-rat  --tgacagg
B D                Guinea pig  --tgacggg
                   Chinchilla  --agacggg
             Brush-tailed rat  --cggcagg
B D                       Pig  --cgacagg
B D                   Dolphin  --cgacagg
                 Killer whale  --cgaccgg
B D          White rhinoceros  --tgacagg
B D                   Ferret   --cgacagg
B D                     Panda  --ccgcagg
               Pacific walrus  --cggcctg
                 Weddell seal  --cggcagg
B D                   Megabat  --cggcggg
                Big brown bat  --cgacagg
B D                  Microbat  --cgacagg
B D                  Hedgehog  --gcacaga
B D                  Elephant  --cggcagg
B D                   Manatee  --cggcagg
             Cape golden mole  --cgacagg
                     Aardvark  --cagcaga
B D                   Opossum  -----gggg
B D           Tasmanian devil  -----cagg
B D                   Wallaby  -----gagg
B D                  Platypus  --tgggagg
  D              Saker falcon  -------ga
  D          Peregrine falcon  -------ga
  D       Collared flycatcher  -------tc
B D       Medium ground finch  -------ac
B D               Zebra finch  --------a
           Tibetan ground jay  --------a
  D           Green seaturtle  --ggaaggg
  D            Painted turtle  --caaaaga
  D  Chinese softshell turtle  ----aaaga
B D                    Lizard  --aggcaac
B D                 Tetraodon  ggacccagg
B D               Stickleback  caacgcggg
B D                     Shrew  =========
               Domestic goat  =========
B D                     Sheep  =========
B D                       Cow  =========
            Tibetan antelope  =========
        David's myotis (bat)  =========
              Bactrian camel  =========
B D                    Alpaca  =========
B D                       Dog  =========
B D                       Cat  =========
B D                    Rabbit  =========
B D                 Armadillo  =========
B D                    Tenrec  =========
B D                     Horse  =========
            Black flying-fox  =========
         Princess of Burundi  =========
B D              Nile tilapia  =========
B D                      Fugu  =========
      Yellowbelly pufferfish  =========
                 Zebra mbuna  =========
B D                Coelacanth  =========
                 Spotted gar  =========
    Mexican tetra (cavefish)  =========
          Southern platyfish  =========
B D             X. tropicalis  =========
B D                Budgerigar  =========
  D             Scarlet macaw  =========
  D    White-throated sparrow  =========
B D                    Turkey  ---------
B D                   Chicken  ---------
B D           Squirrel monkey  =========
  D               Rock pigeon  =========
B D                   Lamprey  =========
  D              Mallard duck  =========
B D                    Rhesus  NNNNNNNNN
B D        American alligator  ---------

Inserts between block 4 and 5 in window
B D                      Pig 2bp
B D                  Dolphin 2bp
                Killer whale 2bp
B D         White rhinoceros 2bp
B D                  Ferret  2bp
B D                    Panda 2bp
              Pacific walrus 2bp
                Weddell seal 2bp
B D                  Megabat 2bp
               Big brown bat 2bp
B D                 Microbat 2bp
B D                 Hedgehog 27bp
B D                  Opossum 3bp
B D          Tasmanian devil 3bp
B D                  Wallaby 3bp

Alignment block 5 of 384 in window, 133308920 - 133308922, 3 bps 
B D                     Human  ---ct-----g
B D                     Chimp  ---ct-----g
B D                   Gorilla  ---ct-----g
B D                 Orangutan  ---ct-----g
B D                    Gibbon  ---ct-----g
B D       Crab-eating macaque  ---ct-----g
B D                    Baboon  ---ct-----g
B D              Green monkey  ---ct-----g
B D                  Marmoset  ---ct-----g
           Chinese tree shrew  ---tt-----g
B D                  Squirrel  ---ct-----g
       Lesser Egyptian jerboa  ---ttgcggcg
                 Prairie vole  ---ct-----g
B D           Chinese hamster  ---ct-----g
               Golden hamster  ---ct-----g
B D                     Mouse  ---cc-----g
B D                       Rat  ---ct-----g
B D            Naked mole-rat  ---ct-----g
B D                Guinea pig  ---ct-----g
                   Chinchilla  ---ct-----g
             Brush-tailed rat  ---ct-----g
B D                       Pig  -------gtgg
B D                   Dolphin  -------gtgg
                 Killer whale  -------gtgg
B D                       Cow  -------ctgc
B D          White rhinoceros  -------gtgg
B D                   Ferret   -------gcgc
B D                     Panda  -------gtgg
               Pacific walrus  -------gtgg
                 Weddell seal  -------gcgg
B D                   Megabat  -------gcga
                Big brown bat  -------gtgg
B D                  Microbat  -------gtgg
B D                  Hedgehog  -------cttc
B D                     Shrew  -------ggtg
B D                  Elephant  --------cag
B D                   Manatee  --------cag
             Cape golden mole  --------ctg
                     Aardvark  --------ccg
B D                   Opossum  --------ctg
B D           Tasmanian devil  --------ttg
B D                   Wallaby  --------atg
B D                  Platypus  --------cag
  D              Saker falcon  --------tgc
  D          Peregrine falcon  --------tgc
  D       Collared flycatcher  --------gga
B D       Medium ground finch  --------cag
B D               Zebra finch  --------ctg
           Tibetan ground jay  --------tcc
B D        American alligator  --------ctc
  D           Green seaturtle  --------gag
  D            Painted turtle  --------tgg
  D  Chinese softshell turtle  --------tgg
B D                    Lizard  --------taa
B D                 Tetraodon  acc--------
B D               Stickleback  ct---------
               Domestic goat  ===========
B D                     Sheep  ===========
            Tibetan antelope  ===========
        David's myotis (bat)  ===========
              Bactrian camel  ===========
B D                    Alpaca  ===========
B D                       Dog  ===========
B D                       Cat  ===========
B D                    Rabbit  ===========
B D                 Armadillo  ===========
B D                    Tenrec  ===========
B D                  Bushbaby  -----------
B D                     Horse  ===========
            Black flying-fox  ===========
         Princess of Burundi  ===========
B D              Nile tilapia  ===========
B D                      Fugu  ===========
      Yellowbelly pufferfish  ===========
                 Zebra mbuna  ===========
B D                Coelacanth  ===========
                 Spotted gar  ===========
    Mexican tetra (cavefish)  ===========
          Southern platyfish  ===========
B D             X. tropicalis  ===========
B D                Budgerigar  ===========
  D             Scarlet macaw  ===========
  D    White-throated sparrow  ===========
B D                    Turkey  -----------
B D                   Chicken  -----------
B D           Squirrel monkey  ===========
  D               Rock pigeon  ===========
B D                   Lamprey  ===========
  D              Mallard duck  ===========
B D                    Rhesus  NNNNNNNNNNN

Inserts between block 5 and 6 in window
B D                 Elephant 2bp
B D                  Manatee 2bp
            Cape golden mole 2bp
                    Aardvark 2bp
B D                  Opossum 2bp
B D          Tasmanian devil 7bp
B D                  Wallaby 1bp

Alignment block 6 of 384 in window, 133308923 - 133308960, 38 bps 
B D                     Human  cgcccgcc-----cg----c---------------gc---------------------------------
B D                     Chimp  cgcccgcc-----cg----c---------------gc---------------------------------
B D                   Gorilla  cgcccgcc-----cg----c---------------gc---------------------------------
B D                 Orangutan  cgcccgcc-----cg----c---------------gc---------------------------------
B D                    Gibbon  cgcccgcc-----cg----c---------------gc---------------------------------
B D       Crab-eating macaque  cggccgcc-----cg----c---------------gc---------------------------------
B D                    Baboon  cgcccgcc-----cg----c---------------gc---------------------------------
B D              Green monkey  cgcccgcc-----cg----g---------------gc---------------------------------
B D                  Marmoset  cgcgggcc-----cg----c---------------gc---------------------------------
B D                  Bushbaby  -----------------------------------gc---------------------------------
           Chinese tree shrew  tgagcggc-----tg----c---------------at---------------------------------
B D                  Squirrel  cg------------g----c---------------gc---------------------------------
       Lesser Egyptian jerboa  cg------------g----c---------------gc---------------------------------
                 Prairie vole  cg------------g----c---------------aa---------------------------------
B D           Chinese hamster  cg------------g----c---------------ag---------------------------------
               Golden hamster  cg------------g----c---------------ag---------------------------------
B D                     Mouse  cg------------g----c---------------gg---------------------------------
B D                       Rat  cg------------g----c---------------gg---------------------------------
B D            Naked mole-rat  cg-ccgcc-----gg----t---------------gc---------------------------------
B D                Guinea pig  cg-gcccc-----gg----t---------------gc---------------------------------
                   Chinchilla  cg--cccg-----gg----c---------------gc---------------------------------
             Brush-tailed rat  cg---cgg-----gg----c---------------gc---------------------------------
B D                       Pig  gg-gcgcc-----gg----c---------------tc---------------------------------
B D                   Dolphin  cg-ccgct-----gg----c---------------gc---------------------------------
                 Killer whale  cg-ccgct-----gg----c---------------gc---------------------------------
B D                       Cow  cg-ccgcc-----gg----c---------------gc---------------------------------
B D          White rhinoceros  cg-ccgcc-----gc----c---------------gc---------------------------------
B D                   Ferret   gg-ccgcc-----gg----c---------------gc---------------------------------
B D                     Panda  tg-ccgcc-----gg----a---------------gc---------------------------------
               Pacific walrus  tg-ccgct-----ag----t---------------gc---------------------------------
                 Weddell seal  ta-ccgct-----gg----c---------------gc---------------------------------
B D                   Megabat  ct-tcgcc-----gg----c---------------gc---------------------------------
                Big brown bat  ct-acg-c-----gg----c---------------ga---------------------------------
B D                  Microbat  ct-acg-c-----gg----c---------------aa---------------------------------
B D                  Hedgehog  cg-gctcc-----gg----g---------------ac-------------------ggtggccgacaggc
B D                     Shrew  cg-gcgcg-----gg----g---------------ac---------------------------------
B D                  Elephant  ---ggaga-----gg----c---------------gg---------------------------------
B D                   Manatee  ---gtgcc-----gg----c---------------cg---------------------------------
             Cape golden mole  ---gtggc-----gg----c---------------gg---------------------------------
B D                    Tenrec  ---ccggc-----cg----c---------------gg---------------------------------
                     Aardvark  ---gtgtc-----gg----t---------------gg---------------------------------
B D                   Opossum  ----tgcc-----ag----cccggcccaggacccggt---------------------------------
B D           Tasmanian devil  ----agca-----cg----cccgccttaagcccc-gc---------------------------------
B D                   Wallaby  ----agct-----gg----ccc--------------c---------------------------------
B D                  Platypus  ---ccgctggagggg----c---------------gg---------------------------------
  D              Saker falcon  --------tgcatgg----c---------------cc--------------------------------c
  D          Peregrine falcon  --------tgcatgg----c---------------cc--------------------------------c
  D       Collared flycatcher  --------cgtgctgtaccc---------------ac-------------------------------gg
B D       Medium ground finch  --------cgccctg----c---------------cg-------------------------------ga
B D               Zebra finch  --------cgctccg----c---------------cc-------------------------------gt
           Tibetan ground jay  --------ctacctg----c---------------cc-------------------------------gc
B D                    Turkey  --------cgttcag----c---------------ac------------------------------ggc
B D        American alligator  --------ggcgccg----g---------------cc-------------------------------gg
  D           Green seaturtle  --------tggggaa----c---------------tggtgggttagagtagaggggctgggagccaggac
  D            Painted turtle  --------cggttcg----c---------------tg-------agcgt----gccctgttcgcagggac
  D  Chinese softshell turtle  --------cgtcccg----c---------------tg-------agcgc----gc--------ccggcgc
B D                    Lizard  --------ccctcct----c---------------cc--------------------------gcttaga
B D                 Tetraodon  --------------------------------------------------------------------ag
B D               Stickleback  ----------------------------------------------------------------------
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
B D                       Dog  ======================================================================
B D                       Cat  ======================================================================
B D                    Rabbit  ======================================================================
B D                 Armadillo  ======================================================================
B D                     Horse  ======================================================================
            Black flying-fox  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
                 Zebra mbuna  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
  D             Scarlet macaw  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                   Chicken  ----------------------------------------------------------------------
B D           Squirrel monkey  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
  D              Mallard duck  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -ccg------gg-gt------------gat----------gcag--------------tt----------
                        Chimp  -ccg------gg-gt------------gat----------gcag--------------tt----------
                      Gorilla  -ccg------gg-gt------------gat----------gcag--------------tt----------
                    Orangutan  -ccg------gg-gt------------gat----------gcag--------------ct----------
                       Gibbon  -ccg------gg-gt------------gat----------gcag--------------ct----------
          Crab-eating macaque  -ccg------gg-gt------------gat----------gcag--------------ct----------
                       Baboon  -ccg------gg-gt------------gat----------gcag--------------ct----------
                 Green monkey  -ccg------gg-gt------------gat----------gcag--------------ct----------
                     Marmoset  -cca------ga-gt------------gat----------gcag--------------ct----------
                     Bushbaby  -cag------gg-aa------------gat----------gcag--------------ct----------
           Chinese tree shrew  -ccg------ag-gc------------gat----------gcag--------------ct----------
                     Squirrel  -cgccgcgaagg-gc------------gac----------accg--------------cg----------
       Lesser Egyptian jerboa  -ccc------gg-gt------------gat----------gctg--------------ct----------
                 Prairie vole  -cag------tg-ga------------gat----------gttg--------------ct----------
              Chinese hamster  -ccc------tg-ga------------gat----------gttg--------------ct----------
               Golden hamster  -ccc------gg-ga------------gat----------gttg--------------ct----------
                        Mouse  -ccg------tg-gt------------gat----------gttg--------------ct----------
                          Rat  -ccg------ta-gt------------gat----------gttg--------------ct----------
               Naked mole-rat  -cca------gg-gc------------gat----------gctg--------------ct----------
                   Guinea pig  -cca------gg-gc------------gat----------gctt--------------ct----------
                   Chinchilla  -cca------gg-gt------------gat----------gcta--------------ct----------
             Brush-tailed rat  -cca------gg-gc------------gat----------gcta--------------ct----------
                          Pig  -gct------gg-gc------------gat----------gcag--------------ct----------
                      Dolphin  -tca------gg-gc------------gat----------gcag--------------ct----------
                 Killer whale  -tca------gg-gc------------gat----------gcag--------------ct----------
                          Cow  -gca------gg-gc------------gat----------gcag--------------tt----------
             White rhinoceros  -gca------gg-gc------------gat----------gcag--------------ct----------
                      Ferret   -gca------ga-gc------------gat----------gcag--------------ct----------
                        Panda  -gca------gg-gc------------gat----------gcag--------------ct----------
               Pacific walrus  -gca------gg-gc------------gat----------gcag--------------ct----------
                 Weddell seal  -gca------gg-gt------------gat----------gcag--------------ct----------
                      Megabat  -gga------ag-gc------------gat----------gcag--------------ct----------
                Big brown bat  -act------gg-at------------gat----------gcag--------------ct----------
                     Microbat  -acc------gg-ac------------gat----------gcag--------------ct----------
                     Hedgehog  tgcg------gatac------------gat----------gcag--------------ct----------
                        Shrew  -gcg------cgcgc------------cat----------gcag--------------ct----------
                     Elephant  tgcc------cg-gc------------cat----------gcag--------------ct----------
                      Manatee  cgcc------gg-gc------------gat----------gctg--------------ct----------
             Cape golden mole  ggcc------cg-ac------------gat----------gcag--------------ct----------
                       Tenrec  -----------g-at------------gat----------gcag--------------ct----------
                     Aardvark  cgcc------cg-gc------------gat----------gcag--------------ct----------
                      Opossum  -cca------ag-ga------------gcc----------------------------------------
              Tasmanian devil  -ccc------gg-gc------------tccggaataggatgcag--------------ct----------
                      Wallaby  -cct------gg-ca------------tcc-----------ctc--------------cc----------
                     Platypus  -cct------gg-gtcccgggggaggggac----------gcga--------------gc----------
                 Saker falcon  ccgg------ga-at------------ggc----------gcagagccccacgccacacg----------
             Peregrine falcon  ccgg------ga-at------------ggc----------gcagagccccacgccacacg----------
          Collared flycatcher  ccgg------tg-gg------------cgt----------ccag--------------ct----------
          Medium ground finch  ccca------ga-ct------------ggt----------gtga--------------gt----------
                  Zebra finch  cccg------cc-at------------gct----------gccg--------------ct----------
           Tibetan ground jay  ccgg------aa-gt------------gcc----------gccg--------------ct----------
                       Turkey  ctcg------gg-gg------------gct----------gcggcgc-----------gt----------
           American alligator  gccg------gc-gg------------gat----------gttg--------------ct----------
              Green seaturtle  tcct----------g------------ggt----------tctc--------------tc----------
               Painted turtle  ttcg------ac-ag------------gat----------gctg--------------ct----------
     Chinese softshell turtle  ttgg------gc-ag------------gat----------gctg--------------ct----------
                       Lizard  cccg------ga-ag------------aca----------aggg--------------gc----------
                    Tetraodon  cccc------tt-ta------------aaa----------atgg--------------cctgaaacagtt
                  Stickleback  cccc------gg-cc------------gaa----------acgg--------------cggaaaa-----
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
             Tibetan antelope  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
                          Dog  ======================================================================
                          Cat  ======================================================================
                       Rabbit  ======================================================================
                    Armadillo  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                  Zebra mbuna  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                Scarlet macaw  ======================================================================
       White-throated sparrow  ======================================================================
                      Chicken  ----------------------------------------------------------------------
              Squirrel monkey  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                 Mallard duck  ======================================================================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  gccc----cc--------cgc
                        Chimp  gccc----cc--------cgc
                      Gorilla  gccc----cc--------cgc
                    Orangutan  accc----cc--------cgc
                       Gibbon  gccg----cc--------tgc
          Crab-eating macaque  gccc----cc--------cgc
                       Baboon  gccc----cc--------cgc
                 Green monkey  gccc----cc--------cgc
                     Marmoset  gccc----cc--------tgc
                     Bushbaby  accc----gc--------agt
           Chinese tree shrew  gcca----cc--------cgc
                     Squirrel  caac----ac--------cgc
       Lesser Egyptian jerboa  accc----cc--------tgc
                 Prairie vole  tccc----cc--------ttc
              Chinese hamster  cccc----ac--------tgc
               Golden hamster  ttcc----cc--------tgc
                        Mouse  tccc----cc--------tgc
                          Rat  tccc----cc--------tgc
               Naked mole-rat  cccc----ac--------ggc
                   Guinea pig  gcct----gc--------agc
                   Chinchilla  gcct----tc--------cgc
             Brush-tailed rat  gcct----tc--------cgc
                          Pig  gccg----cc--------cgc
                      Dolphin  gcca----cc--------cgc
                 Killer whale  gcca----cc--------cgc
                          Cow  gccg----cc--------cgc
             White rhinoceros  gccg----cc--------cgc
                      Ferret   gcca----cc--------cgc
                        Panda  gtcg----cc--------cgc
               Pacific walrus  gccg----cc--------cgc
                 Weddell seal  gccg----cc--------cgc
                      Megabat  gccg----cc--------cgc
                Big brown bat  gccg----cc--------cga
                     Microbat  gccg----cc--------cgc
                     Hedgehog  gccg----cc--------cgc
                        Shrew  ccct----cc--------cgc
                     Elephant  gccg----cc--------cgc
                      Manatee  gccg----tc--------ggc
             Cape golden mole  gccg----gc--------cac
                       Tenrec  gccg----cc--------agc
                     Aardvark  gccg----cc--------cgc
                      Opossum  ---------------------
              Tasmanian devil  gccg----cc--------ggg
                      Wallaby  ctct----cc--------atg
                     Platypus  gccggggacc--------ccc
                 Saker falcon  gcct----cctcccccagcct
             Peregrine falcon  gcct----cctcccccagcct
          Collared flycatcher  gccc----ccgcccctg--ct
          Medium ground finch  ggga----cc-----------
                  Zebra finch  gccg----ccgcgcct-----
           Tibetan ground jay  ggcg----gc---------gg
                       Turkey  gggg----ct---------gc
           American alligator  gctg----tcggggct---ga
              Green seaturtle  cccg----gctct--------
               Painted turtle  gccg----cc-----------
     Chinese softshell turtle  gccg----cc-----------
                       Lizard  gggg----cctcccctctcgc
                    Tetraodon  gccc----tg--------tgc
                  Stickleback  gccc----gg--------ttc
                Domestic goat  =====================
                        Sheep  =====================
             Tibetan antelope  =====================
         David's myotis (bat)  =====================
               Bactrian camel  =====================
                       Alpaca  =====================
                          Dog  =====================
                          Cat  =====================
                       Rabbit  =====================
                    Armadillo  =====================
                        Horse  =====================
             Black flying-fox  =====================
          Princess of Burundi  =====================
                 Nile tilapia  =====================
                         Fugu  =====================
       Yellowbelly pufferfish  =====================
                  Zebra mbuna  =====================
                   Coelacanth  =====================
                  Spotted gar  =====================
     Mexican tetra (cavefish)  =====================
           Southern platyfish  =====================
                X. tropicalis  =====================
                   Budgerigar  =====================
                Scarlet macaw  =====================
       White-throated sparrow  =====================
                      Chicken  ---------------------
              Squirrel monkey  =====================
                  Rock pigeon  =====================
                      Lamprey  =====================
                 Mallard duck  =====================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNN

Alignment block 7 of 384 in window, 133308961 - 133308970, 10 bps 
B D                     Human  --gctgtgcgcc
B D                     Chimp  --gctgtgcgcc
B D                   Gorilla  --gctgtgcgcc
B D                 Orangutan  --gctgtgcgcc
B D                    Gibbon  --gctgtgcgcc
B D       Crab-eating macaque  --gctgtgcgcc
B D                    Baboon  --gctgtgcgcc
B D              Green monkey  --gctgtgcgcc
B D                  Marmoset  --gctccgcgcc
B D                  Bushbaby  --gctgtgcgcc
           Chinese tree shrew  --actgcatgcc
B D                  Squirrel  --gctgcgcgcc
       Lesser Egyptian jerboa  --gttgcaggcc
                 Prairie vole  --gctatattcc
B D           Chinese hamster  --gctatattcg
               Golden hamster  --gctatattcg
B D                     Mouse  --actatattcc
B D                       Rat  --actatattcc
B D            Naked mole-rat  --acttcgggcc
B D                Guinea pig  --acttcgggcc
                   Chinchilla  --gcttcgggct
             Brush-tailed rat  --gctccgggct
B D                       Pig  --gctgcacgtc
B D                   Dolphin  --gctgcacgca
                 Killer whale  --gctgcacgca
B D                       Cow  --gctgcacgcc
B D          White rhinoceros  --gctgcacgcc
B D                   Ferret   --gctgcgctcc
B D                     Panda  --gctatactcc
               Pacific walrus  --gctgcactcc
                 Weddell seal  --gttgcactcc
B D                   Megabat  --gctgcacgcc
                Big brown bat  --ggtgcacgcc
B D                  Microbat  --ggtgcacgcc
B D                  Hedgehog  --ggtgccggcg
B D                     Shrew  --gctcttctct
B D                  Elephant  --cctgcgcgcc
B D                   Manatee  --tctgcgcacc
             Cape golden mole  --cctgcgcgcc
B D                    Tenrec  --cattcgcgcc
                     Aardvark  --cctgcgcgcc
B D                   Opossum  ---ctgccaagt
B D           Tasmanian devil  --gctggaggtc
B D                   Wallaby  --gctgctggct
B D                  Platypus  --tctctgggcc
  D              Saker falcon  --gcggcacagc
  D          Peregrine falcon  --gcggcacagc
  D       Collared flycatcher  --ggagcattac
B D       Medium ground finch  --------caga
B D               Zebra finch  -----ccgctgc
           Tibetan ground jay  --gaagcgcggt
B D                    Turkey  --tgggcgcggt
B D        American alligator  --gcgccgcggt
  D           Green seaturtle  -----ggaaggg
  D            Painted turtle  ------ggagct
  D  Chinese softshell turtle  ------cgggct
B D                    Lizard  --tccgcccctt
B D               Stickleback  gcgctgggtt--
               Domestic goat  ============
B D                     Sheep  ============
            Tibetan antelope  ============
        David's myotis (bat)  ============
              Bactrian camel  ============
B D                    Alpaca  ============
B D                       Dog  ============
B D                       Cat  ============
B D                    Rabbit  ============
B D                 Armadillo  ============
B D                     Horse  ============
            Black flying-fox  ============
         Princess of Burundi  ============
B D              Nile tilapia  ============
B D                      Fugu  ============
      Yellowbelly pufferfish  ============
B D                 Tetraodon  ============
                 Zebra mbuna  ============
B D                Coelacanth  ============
                 Spotted gar  ============
    Mexican tetra (cavefish)  ============
          Southern platyfish  ============
B D             X. tropicalis  ============
B D                Budgerigar  ============
  D             Scarlet macaw  ============
  D    White-throated sparrow  ============
B D                   Chicken  ------------
B D           Squirrel monkey  ============
  D               Rock pigeon  ============
B D                   Lamprey  ============
  D              Mallard duck  ============
B D                    Rhesus  NNNNNNNNNNNN

Inserts between block 7 and 8 in window
B D      Crab-eating macaque 105bp
B D                 Platypus 2bp

Alignment block 8 of 384 in window, 133308971 - 133308972, 2 bps 
B D                     Human  cg
B D                     Chimp  cg
B D                   Gorilla  cg
B D                 Orangutan  cg
B D                    Gibbon  cg
B D       Crab-eating macaque  cg
B D                    Baboon  cg
B D              Green monkey  cg
B D                  Marmoset  cg
B D                  Bushbaby  cg
           Chinese tree shrew  cg
B D                  Squirrel  cg
       Lesser Egyptian jerboa  cg
                 Prairie vole  cg
B D           Chinese hamster  cg
               Golden hamster  cg
B D                     Mouse  cg
B D                       Rat  cg
B D            Naked mole-rat  cg
B D                Guinea pig  cg
                   Chinchilla  cg
             Brush-tailed rat  cg
B D                       Pig  cg
B D                   Dolphin  cg
                 Killer whale  cg
B D                       Cow  cg
B D          White rhinoceros  cg
B D                   Ferret   cg
B D                     Panda  cg
               Pacific walrus  cg
                 Weddell seal  cg
B D                   Megabat  cg
                Big brown bat  cg
B D                  Microbat  cg
B D                  Hedgehog  cg
B D                     Shrew  cg
B D                  Elephant  cg
B D                   Manatee  cg
             Cape golden mole  cg
B D                    Tenrec  cg
                     Aardvark  cg
B D                   Opossum  ca
B D           Tasmanian devil  cg
B D                   Wallaby  tg
B D                  Platypus  -g
  D              Saker falcon  ga
  D          Peregrine falcon  ga
  D       Collared flycatcher  ct
B D       Medium ground finch  ct
B D               Zebra finch  ct
           Tibetan ground jay  tt
B D                    Turkey  tg
B D        American alligator  gc
  D           Green seaturtle  ga
  D            Painted turtle  ca
  D  Chinese softshell turtle  ca
B D                    Lizard  cc
B D               Stickleback  cg
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
        David's myotis (bat)  ==
              Bactrian camel  ==
B D                    Alpaca  ==
B D                       Dog  ==
B D                       Cat  ==
B D                    Rabbit  ==
B D                 Armadillo  ==
B D                     Horse  ==
            Black flying-fox  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
B D                      Fugu  ==
      Yellowbelly pufferfish  ==
B D                 Tetraodon  ==
                 Zebra mbuna  ==
B D                Coelacanth  ==
                 Spotted gar  ==
    Mexican tetra (cavefish)  ==
          Southern platyfish  ==
B D             X. tropicalis  ==
B D                Budgerigar  ==
  D             Scarlet macaw  ==
  D    White-throated sparrow  ==
B D                   Chicken  --
B D           Squirrel monkey  ==
  D               Rock pigeon  ==
B D                   Lamprey  ==
  D              Mallard duck  ==
B D                    Rhesus  NN

Inserts between block 8 and 9 in window
B D                  Opossum 1bp
B D          Tasmanian devil 1bp
B D                  Wallaby 1bp
B D                 Platypus 1bp

Alignment block 9 of 384 in window, 133308973 - 133308994, 22 bps 
B D                     Human  cc-tcgctg--cgg-------ggc--ccg------ggg--------cg
B D                     Chimp  cc-tcgctg--cgg-------ggc--ccg------ggg--------cg
B D                   Gorilla  cc-tcgctg--cgg-------ggc--ccg------ggg--------ca
B D                 Orangutan  cc-tcgctg--cgg-------ggc--ctg------ggg--------cg
B D                    Gibbon  cc-tcgctg--cgg-------ggc--ccg------ggg--------cg
B D       Crab-eating macaque  cc-ttgccg--cgg-------ggc--ccg------ggg--------tg
B D                    Baboon  cc-tcgccg--cgg-------ggc--ccg------ggg--------tg
B D              Green monkey  cc-tcgccg--cgg-------ggc--ccg------ggg--------cg
B D                  Marmoset  cc-tcgccg--cgg-------ggc--ccg------gga--------cg
B D                  Bushbaby  tc-tggccg--ggg-------ggt--ccg------cag--------cg
           Chinese tree shrew  cc-tggctg--cgg-------ggc--ctg------ggg--------cg
B D                  Squirrel  cc-tggccg--gct-------cgc--ccg------ggg--------cg
       Lesser Egyptian jerboa  tt-tggccg--gag-------cgc--ccg------gag--------ca
                 Prairie vole  cc-tagccg--ggg-------cgc--ccg------ggg--------cg
B D           Chinese hamster  cc-tggccg--ggg-------cgc--ccg------ggg--------ca
               Golden hamster  tc-tggccg--ggg-------cgc--ccg------ggg--------ca
B D                     Mouse  cc-tggccg--ggg-------agc--cgg------ggg--------ca
B D                       Rat  cc-tggccg--gcg-------agc--ccg------ggg--------ca
B D            Naked mole-rat  cg-tggctg--ggg-------cgc--ctg------ggg--------ca
B D                Guinea pig  cc-tggctg--ggc-------cgc--ctg------gcg--------ct
                   Chinchilla  cc-tggctg--ggg-------cgc--ctg------ggg--------ca
             Brush-tailed rat  cc-tggctg--ggg-------cgc--ccg------ggg--------ca
B D                       Pig  cc-tggcgg--ggg-------ccg--ccg------ggg--------cg
B D                   Dolphin  cc-tggcgg--ggg-------cac--ccg------ggt--------cg
                 Killer whale  cc-tggcgg--ggg-------cac--ccg------ggt--------cg
B D                       Cow  cc-tggcgg--ggg-------ccc--ctg------ggg--------cg
B D          White rhinoceros  cc-tcgccg--ggg-------cac--ctg------ggg--------cg
B D                   Ferret   tc-tgctgg--ggg-------cac--ccg------ggg--------cg
B D                     Panda  cc-tggtag--ggg-------cac--ccg------ggg--------cg
               Pacific walrus  ct-tggcgg--ggg-------cac--ccg------ggg--------cg
                 Weddell seal  cc-tggtgg--ggg-------cac--ccg------ggg--------cg
             Black flying-fox  cc-tggggg--cgg-------gac--ctg------ggg--------cc
B D                   Megabat  cc-tggtgg--cgg-------gac--ctg------ggg--------cc
                Big brown bat  cc-tggtgg--cgg-------ggc--ccg------ggg--------cg
B D                  Microbat  cc-tggcgg--cgg-------ggc--ccg------ggg--------cg
B D                  Hedgehog  gc-tggctg--ggg-------cct--ccg------ggg--------cg
B D                     Shrew  ct-tggcag--cgg-------ggc--ccg------ggg--------cg
B D                  Elephant  cc-tggccg--agg-------gcc--ccg------gag--------cc
B D                   Manatee  cc-tggccg--agg-------gcc--cgg------gag--------ag
             Cape golden mole  cc-tgtccg--agg-------gcc--ccg------ggg--------cg
B D                    Tenrec  cc-tggccg--agg-------gcc--ccg------ggg--------cg
                     Aardvark  cc-tggcgg--agg-------gcc--ccg------gtg--------cg
B D                   Opossum  ct-ccgccc--cgc-------tgcc-cca------gctgccc----ca
B D           Tasmanian devil  ct-gggccc--ggc-------ccccgccg------ggagcccttccga
B D                   Wallaby  ct-gggtct--agg-------ctcagcca------ggg--------gg
B D                  Platypus  gt-tggctg--ccc-------ggc--ccg------gga--------tg
  D              Saker falcon  gc-ctgggg--cagat-----ggc--gca------gct--------cg
  D          Peregrine falcon  gc-ctgggg--cagat-----ggc--gca------gct--------cg
  D       Collared flycatcher  gc-cccgcggcgtg-------gac--cccaccat-gcc--------cg
B D       Medium ground finch  gg-tgtgag--tgg-------gac--cca------gac--------tg
B D               Zebra finch  cc-tccgtg--agg-------ggc--tcc------cgc--------cg
           Tibetan ground jay  gcgcatgcg--caa-------ttc--cccagcgcggcc--------ag
B D                    Turkey  ag-gctgtt--ctg-------ccg--gct------gct--------cg
B D        American alligator  gc-gccgag--ctgcc-----gct--cct------gcc--------cg
  D           Green seaturtle  gt-ggggaa--ctggtgggttaga--gta------gag--------gg
  D            Painted turtle  gc-gtctcg--ctg-------cgg--gtg------gag--------cg
  D  Chinese softshell turtle  gc-ctctcg--ctg-------cag--gcg------gag--------cg
B D                    Lizard  gc-ccaaac--cag-------aag--tcaag----ggg--------cg
B D               Stickleback  gc-tgaacg--tcg------------gcg------gga--------cg
               Domestic goat  ================================================
B D                     Sheep  ================================================
            Tibetan antelope  ================================================
        David's myotis (bat)  ================================================
              Bactrian camel  ================================================
B D                    Alpaca  ================================================
B D                       Dog  ================================================
B D                       Cat  ================================================
B D                    Rabbit  ================================================
B D                 Armadillo  ================================================
B D                     Horse  ================================================
         Princess of Burundi  ================================================
B D              Nile tilapia  ================================================
B D                      Fugu  ================================================
      Yellowbelly pufferfish  ================================================
B D                 Tetraodon  ================================================
                 Zebra mbuna  ================================================
B D                Coelacanth  ================================================
                 Spotted gar  ================================================
    Mexican tetra (cavefish)  ================================================
          Southern platyfish  ================================================
B D             X. tropicalis  ================================================
B D                Budgerigar  ================================================
  D             Scarlet macaw  ================================================
  D    White-throated sparrow  ================================================
B D                   Chicken  ------------------------------------------------
B D           Squirrel monkey  ================================================
  D               Rock pigeon  ================================================
B D                   Lamprey  ================================================
  D              Mallard duck  ================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 9 and 10 in window
B D              Stickleback 633bp

Alignment block 10 of 384 in window, 133308995 - 133309042, 48 bps 
B D                     Human  ---------gcgga---------------gcc-gctgcct---gtagagcgg--------------ga--
B D                     Chimp  ---------gcgga---------------gcc-actgcct---gtagagcgg--------------ga--
B D                   Gorilla  ---------gcgga---------------gcc-actgcct---gtagagcgg--------------ga--
B D                 Orangutan  ---------gcgga---------------gcc-actgcct---gtagagcgg--------------ga--
B D                    Gibbon  ---------gcgga---------------gcc-actgcct---gtagaacgg--------------ga--
B D       Crab-eating macaque  ---------gcgga---------------gcc-actgcct---gtagagcgg--------------ta--
B D                    Baboon  ---------gcgga---------------gcc-actgcct---gtagagcgg--------------ga--
B D              Green monkey  ---------gcgga---------------gcc-actgcct---gtagagcgg--------------ga--
B D                  Marmoset  ---------gccga---------------gcc-actgcct---gtagcgcgg--------------ga--
B D                  Bushbaby  ---------gccga---------------gcc-gctgcca---gtggagcgg--------------ga--
           Chinese tree shrew  ---------gctga---------------gcc-gctgcct---gtggagcgg--------------aa--
B D                  Squirrel  ---------gctga---------------gcc-gctgcca---gtggagagg--------------ga--
       Lesser Egyptian jerboa  ---------gccga---------------gcc-gctgcca---gtgcagcgg--------------ga--
                 Prairie vole  ---------gccga---------------acc-gctgcct---gtggagcgg--------------aa--
B D           Chinese hamster  ---------gccga---------------acc-gctgccc---gtggagcga--------------aa--
               Golden hamster  ---------gccga---------------acc-gctgccc---gtggagcgg--------------aa--
B D                     Mouse  ---------gccga---------------acc-gctgccc---gtggagagg--------------aa--
B D                       Rat  ---------gctga---------------acc-gctgccc---gtggagcgc--------------aa--
B D            Naked mole-rat  ---------gccga---------------gcc-gctgccg---gtggagcgg--------------aa--
B D                Guinea pig  ---------gccga---------------gcc-gctgcct---gtggagcgg--------------aa--
                   Chinchilla  ---------gccga---------------gcc-gctgcca---gtggagcgg--------------ag--
             Brush-tailed rat  ---------gccga---------------gcc-gctgccc---gtgcagcgg--------------aa--
B D                       Pig  ---------gccga---------------gcc-gctgccc---gtggagcgg--------------ga--
B D                   Dolphin  ---------gccga---------------gcc-tctgccc---gtggagcgg--------------ga--
                 Killer whale  ---------gccga---------------gcc-tctaccc---gtggagcgg--------------ga--
B D                       Cow  ---------gccgc---------------gcc-gctgccc---gtgcagcgg--------------ga--
B D          White rhinoceros  ---------gccga---------------gcc-gctgccc---gtggagcgg--------------aa--
B D                   Ferret   ---------gctaa---------------gcc-gctgcct---gtggagcgg--------------ga--
B D                     Panda  ---------gccga---------------gcc-gctgcct---gtggagcgg--------------ga--
               Pacific walrus  ---------gccgc---------------gcc-gctgcct---gtggagcgg--------------ga--
                 Weddell seal  ---------gccga---------------gcc-gctgcct---gtggagcgg--------------ga--
             Black flying-fox  ---------cctga---------------tcc-gcttccc---gtggagcgg--------------ga--
B D                   Megabat  ---------cctga---------------tcc-gcttccc---gtggagcgg--------------ga--
                Big brown bat  ---------gctga---------------gcc-gctgccc---gtggagcga--------------ga--
B D                  Microbat  ---------gctga---------------gcc-gctgccc---gtggagcga--------------ga--
B D                  Hedgehog  ---------gccga---------------gcc-tctggcc---gtggagcgg--------------ga--
B D                     Shrew  ---------gccga---------------gcc-gctgcct---gtggagcgg--------------ga--
B D                  Elephant  ---------gccga---------------gcc-gctgccc---gtggtgcga--------------ga--
B D                   Manatee  ---------gccga---------------gcc-gctgccc---gtggtgcgg--------------ca--
             Cape golden mole  ---------gccga---------------gcc-gctgccg---gtagtgcgg--------------gt--
B D                    Tenrec  ---------gccga---------------gcc-gctgccc---gtggagcgg--------------ga--
                     Aardvark  ---------gctga---------------gcc-gctgcca---gtggtgcgg--------------ga--
B D                   Opossum  ---------gctgc---------------cccagctgctc---atgctccc---------------tg--
B D           Tasmanian devil  ---------gtcgc---------------tcccgctgccc---gtgctccgc--------------ca--
B D                   Wallaby  ---------accca---------------ttctgctgccc---gccccccg-------------------
B D                  Platypus  ---------gcggc---------------ctg-ggacccg---ggggaggggaggagggcaccggaga--
  D              Saker falcon  gagtagaatgcccc---------------agg-ggctccc---acggtgctg--------------gggg
  D          Peregrine falcon  gagtagaatgcccc---------------agg-ggctccc---acggtgctg--------------gggg
  D       Collared flycatcher  ---------tcatc---------------gtc-aacaccc---gcagcctca--------------agga
B D       Medium ground finch  ---------gtgtg---------------agt-gggacccagactgg-----------------------
B D               Zebra finch  ---------ctccc---------------gcc-ggacccc---ccggccccg--------------ccgc
           Tibetan ground jay  ---------ccggc---------------agc-gcgcccc---gcgcatgcg--------------cagt
B D                    Turkey  ---------ctggt---------------ggt-cggtagc---catgttctg--------------gagg
B D        American alligator  -------------c---------------gcc-ggcccgc---g--------------------------
  D           Green seaturtle  ---------gc----------------------------t---gggagccag--------------ga--
  D            Painted turtle  ---------gcccc---------------tgt-tgcccgt---ccggccccg--------------ca--
  D  Chinese softshell turtle  ---------gcccc---------------tgc-tgcccgt---ccggccccg--------------ct--
B D                    Lizard  ---------gcgcctccctgaggggaaatggc-ggctccc---gcgg-----------------------
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
B D                       Dog  ======================================================================
B D                       Cat  ======================================================================
B D                    Rabbit  ======================================================================
B D                 Armadillo  ======================================================================
B D                     Horse  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
  D             Scarlet macaw  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                   Chicken  ----------------------------------------------------------------------
B D           Squirrel monkey  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
  D              Mallard duck  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -------tcccgcggctggggccgcgccc
                        Chimp  -------tcccgcggctggggccgcgccc
                      Gorilla  -------ccccgcggctggggccgcgccc
                    Orangutan  -------ccccgcggctggggccgcgccg
                       Gibbon  -------ccccgcggctggggccgcgccc
          Crab-eating macaque  -------ccccgcggctggggccgcgccc
                       Baboon  -------ccccgcggctggggccgcgccc
                 Green monkey  -------ccccgcggctggggccgcgccc
                     Marmoset  -------ccccacggccaatgccgcgcct
                     Bushbaby  -------ccctgcggccaaggccgcgccc
           Chinese tree shrew  -------ccccgcggccggggccgcacct
                     Squirrel  -------ccccgcggccggggcggcgccc
       Lesser Egyptian jerboa  -------ctccgcggcgggggcggcaccc
                 Prairie vole  -------ccctgcagctggggctgcgccc
              Chinese hamster  -------ccctgcagctggggcggcgccc
               Golden hamster  -------ccctgcagctggagcagcgccc
                        Mouse  -------ccctgcggctggggaggcaccc
                          Rat  -------ccctgcggctggggaggcaccc
               Naked mole-rat  -------ccccgaggcccgagcggcgccc
                   Guinea pig  -------ccccgcggctcaagcggcgccc
                   Chinchilla  -------ccccgcggcccgagcggcgccc
             Brush-tailed rat  -------ccctgcggcccgagcggcgccc
                          Pig  -------ccccgcggccggggccgctccc
                      Dolphin  -------ccccgcggccaggaccgcgccc
                 Killer whale  -------ccccgcggccaggaccgcgccc
                          Cow  -------ctccctggccgggaacgcgccc
             White rhinoceros  -------ccccaaggccggggccgcgccc
                      Ferret   -------ccccgcggccggggccccgccc
                        Panda  -------ccccgcggccggggccccgccc
               Pacific walrus  -------ccccgcggccggggccccgccc
                 Weddell seal  -------ccccgcggctggggccccgccc
             Black flying-fox  -------ccccgcggccgggaccaaaccc
                      Megabat  -------ccccgcggccgggaccgcaccc
                Big brown bat  -------ccccgcggccggggccgcgcct
                     Microbat  -------ccccgcggccggggccgcgcct
                     Hedgehog  -------ccccagggccgggtcggcgccc
                        Shrew  -------ccccgcggccggggccgcgccc
                     Elephant  -------ccccgcggcgggggccgcgccc
                      Manatee  -------ccctgcggcgggagccgcgccc
             Cape golden mole  -------ccctgcggctggggccgcgccc
                       Tenrec  -------ccccgcggcggggaaggcgccc
                     Aardvark  -------ccccgcggcaggggcggcaccc
                      Opossum  -------ttcggctgc---tgc---cctc
              Tasmanian devil  -------cccggccgccggcgccgccccc
                      Wallaby  ---------cagctgcatgtgc-------
                     Platypus  -------ccccctctctggggc-------
                 Saker falcon  tgtggggtgaagctgggtgc---------
             Peregrine falcon  tgtggggtgaagctgggtgc---------
          Collared flycatcher  -------cggcgacgccggc---------
          Medium ground finch  -------------tgtgagt---------
                  Zebra finch  -------cccctccgcccgc---------
           Tibetan ground jay  gcccgcgccatgctgccgct---------
                       Turkey  -------ggggacagccggc---------
           American alligator  -------ccccgccgcaggc---------
              Green seaturtle  -------ctcc----tggg----------
               Painted turtle  -------ccccgccgcgggc---------
     Chinese softshell turtle  -------cgccgccgcgggc---------
                       Lizard  -------caagcacgtcgac---------
                Domestic goat  =============================
                        Sheep  =============================
             Tibetan antelope  =============================
         David's myotis (bat)  =============================
               Bactrian camel  =============================
                       Alpaca  =============================
                          Dog  =============================
                          Cat  =============================
                       Rabbit  =============================
                    Armadillo  =============================
                        Horse  =============================
          Princess of Burundi  =============================
                 Nile tilapia  =============================
                         Fugu  =============================
       Yellowbelly pufferfish  =============================
                    Tetraodon  =============================
                  Zebra mbuna  =============================
                   Coelacanth  =============================
                  Spotted gar  =============================
                  Stickleback  =============================
     Mexican tetra (cavefish)  =============================
           Southern platyfish  =============================
                X. tropicalis  =============================
                   Budgerigar  =============================
                Scarlet macaw  =============================
       White-throated sparrow  =============================
                      Chicken  -----------------------------
              Squirrel monkey  =============================
                  Rock pigeon  =============================
                      Lamprey  =============================
                 Mallard duck  =============================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 10 and 11 in window
  D             Saker falcon 15bp
  D         Peregrine falcon 15bp
  D      Collared flycatcher 12bp
B D      Medium ground finch 1236bp
B D              Zebra finch 10bp
          Tibetan ground jay 17bp
B D                   Turkey 17bp
B D       American alligator 4bp
  D           Painted turtle 4bp
  D Chinese softshell turtle 4bp
B D                   Lizard 1bp

Alignment block 11 of 384 in window, 133309043 - 133309098, 56 bps 
B D                     Human  tttcgc--------------------ttcgttgc---------gcgcc------ccgtgcgcttccc---
B D                     Chimp  tttcac--------------------ttcgttgc---------gcgcc------ccgtgcgcttccc---
B D                   Gorilla  tttcgc--------------------ttcgttgc---------gcgcc------ccgtgcgcttctc---
B D                 Orangutan  tttcgc--------------------ttcgttgc---------gcgcc------ccgtgcgcttccc---
B D                    Gibbon  tttcgc--------------------ttcattgc---------gcgcc------ccgtgcgcttccc---
B D       Crab-eating macaque  tttcgc--------------------ttcgttgc---------gcgcc------cggtgcgcttccc---
B D                    Baboon  tttcgc--------------------ttcgttgc---------gcgcc------cggtgcgcttccc---
B D              Green monkey  tttcgc--------------------ttcgttgc---------gcgcc------cggtgcgcttccc---
B D                  Marmoset  tttcgc--------------------ttcgctgc---------gcgcc------cggtgcgcttccc---
B D                  Bushbaby  ttccgc--------------------ttcgctgc---------gcgct------tggtacggttccc---
           Chinese tree shrew  tttcgc--------------------ttcgcagc---------gcgcc------tagtgcgcttccc---
B D                  Squirrel  ttccgc--------------------tttgtggc---------acgcc------cggtgcgcctccc---
       Lesser Egyptian jerboa  tttctg--------------------ttctcgcc---------gcgac------cggtgcgcttccc---
                 Prairie vole  ttccgg--------------------ttcacacc---------gcgac------ccgtgcacttccc---
B D           Chinese hamster  ttcctg--------------------ttcacacc---------gcgcc------tcgtccgcttccc---
               Golden hamster  ttccag--------------------ttcacacc---------gcgcc------ccgtccgcttccc---
B D                     Mouse  ttccga--------------------ttcgcgcc---------gcgtg------ccgtgcgcttccc---
B D                       Rat  ttccga--------------------tatgcgcc---------gcgtc------ccgtgcgcttccc---
B D            Naked mole-rat  ttccgc--------------------ttcgtacc---------gcgtc------tggtgcgtttccc---
B D                Guinea pig  ttcggc--------------------ttcgtgcc---------gcgcc------cagtgcgtttccc---
                   Chinchilla  ttcggc--------------------ttcgtgcc---------gcgcc------cagtgcgtttccc---
             Brush-tailed rat  ttcggc--------------------ttcgtgcc---------gcgcc------tgatgcgtttccc---
B D                       Pig  ttcacc--------------------ttcgcggc---------gcgcc------aggtgcgcttccc---
B D                   Dolphin  ttccgc--------------------ttcgcgcc---------gcgcc------cggtgcgcttccc---
                 Killer whale  ttccgc--------------------ttcgcgcc---------gcgcc------cggtgcgcttccc---
B D                       Cow  ttccgc--------------------ttcgcggc---------gcgcc------aggtgcgcttccc---
B D          White rhinoceros  ttccgc--------------------ttcatggc---------gcgcc------tggtgcgcttccc---
B D                   Ferret   ttccac--------------------ttcgcggc---------gcggc------gggtgcgcttccc---
B D                     Panda  ttccgc--------------------ttcgcggc---------gcgcc------gggttcgctttcc---
               Pacific walrus  ttccac--------------------ttcgcggc---------gcgcc------gggtgcgcttccc---
                 Weddell seal  ttccac--------------------ttcgcggc---------gcgcc------gggtgcgcttccc---
             Black flying-fox  ttccgc--------------------tttgcggc---------gcgtc------gagtgcgcttccc---
B D                   Megabat  ttccgc--------------------tttgcggc---------gcgtc------gggtgcgcttccc---
                Big brown bat  ttccgc--------------------tttgcggc---------gcgcc------tggtacgcttccc---
B D                  Microbat  ttccgc--------------------tttgcggc---------gcgtc------tggtacgcttccc---
B D                  Hedgehog  ttcctc--------------------ttcgcggc---------gcgcc------ggctgcacttccc---
B D                     Shrew  ttctgc--------------------ttcgcggc---------tcgcc------ggctgcgcttccc---
B D                  Elephant  tttcgt--------------------ttcgtggc---------gcgcc------gggtccgcttccc---
B D                   Manatee  tttcgc--------------------ttcgcggc---------gcgcc------ggggccgcttctc---
             Cape golden mole  tttcgc--------------------ttcgtggc---------tcgcc------gggtccgctttcc---
B D                    Tenrec  tttcga--------------------ttcgcggc---------gcgcc------gggtccgcttccc---
                     Aardvark  tttcgt--------------------ttcgcggc---------gcgcc------tggtccgcttccc---
B D                   Opossum  ttcagc--------------------ttcccact---------gcagg------tcctgagcctgctacc
B D           Tasmanian devil  tttcgc--------------------ttcgcgcc---------gcgga------cccagcgcctgcc---
B D                   Wallaby  -tttgc--------------------cacctgcc---------acgggggtgaccccagcctgtgcc---
B D                  Platypus  ttgggt--------------------tgtccggc---------caggc------tgggatgatggcc---
  D              Saker falcon  tggtgcaggt---------------gtcccaggc---------tttcc------tggcctgcagctg---
  D          Peregrine falcon  tggtgcaggt---------------gtcccaggc---------tttcc------tggcctgcagctg---
  D       Collared flycatcher  --------------------------tcggtggccgagggggacgtgt------accgctacag------
B D               Zebra finch  --------------------------tccttcgc---------ccccc------gccgccacagcct---
           Tibetan ground jay  --------------------------tcctgctccgtgaggggctccc------tccgctccctcag---
B D                    Turkey  ttctgcgggc----------------acgtgggc---------tgtgg------gggccagcagctg---
B D        American alligator  -------------------------ttccgcttc---------tcgcc------ccgccgcctgcgg---
  D           Green seaturtle  --------------------------ttctctcc------------cc------ggctctg----ga---
  D            Painted turtle  ttctgc--------------------ttctcccc---------cagcc------gcctccgcttcca---
  D  Chinese softshell turtle  ttctgc--------------------ttctcggc---------ccgcc------gcctccgcttcca---
B D                    Lizard  ----gcgggctccgtcccggggcctttccgcttc---------cgccc------ggcgcggctccgc---
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
B D                       Dog  ======================================================================
B D                       Cat  ======================================================================
B D                    Rabbit  ======================================================================
B D                 Armadillo  ======================================================================
B D                     Horse  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
  D             Scarlet macaw  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                   Chicken  ----------------------------------------------------------------------
B D           Squirrel monkey  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
  D              Mallard duck  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ---gc-----gggagc-----accagttcttcga------ggt
                        Chimp  ---gc-----gggagc-----accagttcttcga------ggt
                      Gorilla  ---gc-----gggagc-----atcagttcttcga------ggt
                    Orangutan  ---gc-----gggagc-----acgagttcttcga------ggt
                       Gibbon  ---gc-----gggagc-----acgagttcttcga------ggt
          Crab-eating macaque  ---gc-----gagagc-----acgagttcttcga------ggt
                       Baboon  ---gc-----gagagc-----acgagttcttcga------ggt
                 Green monkey  ---gc-----gagagc-----acgagttcttcga------ggt
                     Marmoset  ---gc-----gggagc-----acgagttcttcga------ggt
                     Bushbaby  ---ac-----gagaac-----acgagtttttcga------ggt
           Chinese tree shrew  ---ga-----gggatc-----acgagttttttga------ggt
                     Squirrel  ---gc-----gggagc-----acgagctcttcga------ggt
       Lesser Egyptian jerboa  ---gc-----gggacc-----accagttcttcga------ggt
                 Prairie vole  ---gc-----gggatc-----acgaattctttga------ggt
              Chinese hamster  ---ac-----gggatc-----acgagttctttga------ggt
               Golden hamster  ---ac-----gggatc-----acgagttctttga------ggt
                        Mouse  ---gc-----gggatc-----acgaattcttcga------ggt
                          Rat  ---gc-----gggatc-----acgaattcttcga------ggt
               Naked mole-rat  ---ga-----gggaac-----atgagttcttcga------ggt
                   Guinea pig  ---ga-----gggagc-----acgagttcttcga------ggt
                   Chinchilla  ---ga-----gggaac-----acgagttcttcga------ggt
             Brush-tailed rat  ---ga-----gggaac-----atgagttcttcga------agt
                          Pig  ---ac-----gggagc-----acgagttcttcga------ggt
                      Dolphin  ---ac-----gggagc-----acgaattctttga------ggt
                 Killer whale  ---ac-----gggagc-----acgacttctttga------ggt
                          Cow  ---gc-----gggaac-----acgagttcttcga------ggt
             White rhinoceros  ---gc-----gcgagc-----atgagttcttcga------ggt
                      Ferret   ---gc-----gggacc-----acgagttcttcga------ggt
                        Panda  ---gc-----gggacc-----acgagttcttcga------ggt
               Pacific walrus  ---gc-----gggacc-----acgagtttttcga------ggt
                 Weddell seal  ---gc-----gggacc-----acgagtttttcga------ggt
             Black flying-fox  ---gc-----gggaac-----acgagttcttcga------ggt
                      Megabat  ---gc-----gggaac-----acgagttcttcga------ggt
                Big brown bat  ---gc-----gggagc-----atgagttctttga------ggt
                     Microbat  ---gc-----gggagc-----atgagtttttcga------ggt
                     Hedgehog  ---gc-----gagacc-----acgccttcttcga------ggt
                        Shrew  ---gc-----gggagc-----acgagttcttcga------ggt
                     Elephant  ---gc-----gagagc-----acgagttcttcga------ggt
                      Manatee  ---gc-----gggagc-----acgagttcttcga------ggt
             Cape golden mole  ---gc-----gggagc-----acgaattcttcga------ggt
                       Tenrec  ---gc-----gggagc-----acgagttcttcga------ggt
                     Aardvark  ---gc-----gagagc-----acgagttcttcga------ggt
                      Opossum  ccaac-----ccccac-----acctgccgttcga------ggt
              Tasmanian devil  ---cc-----ggggac-----acccgttgttcga------ggt
                      Wallaby  -----------aggac-----acctgctgctcga------ggt
                     Platypus  ----------ggggac-----gtggg-----------------
                 Saker falcon  ---tg-----gacggt-----gcgttctctccat---------
             Peregrine falcon  ---tg-----gacggt-----gcgttctctccat---------
          Collared flycatcher  ------------------------------cgag---------
                  Zebra finch  ---tg---------------------taccctat---------
           Tibetan ground jay  ---gg---------------------tcccccat---------
                       Turkey  ---tg-----------------------ccgggt---------
           American alligator  ---tgcccccgcgagc-----acgagctcctgga---------
              Green seaturtle  ---ag-----gggagtggggaactggtgggttagagt------
               Painted turtle  ---tc-----gccagc-----acgagttctttgaggt------
     Chinese softshell turtle  ---tc-----gccagc-----acgagttcttcgaggt------
                       Lizard  ---tt-----ccccgcccaccacccgttcttcga---ggt---
                Domestic goat  ===========================================
                        Sheep  ===========================================
             Tibetan antelope  ===========================================
         David's myotis (bat)  ===========================================
               Bactrian camel  ===========================================
                       Alpaca  ===========================================
                          Dog  ===========================================
                          Cat  ===========================================
                       Rabbit  ===========================================
                    Armadillo  ===========================================
                        Horse  ===========================================
          Princess of Burundi  ===========================================
                 Nile tilapia  ===========================================
                         Fugu  ===========================================
       Yellowbelly pufferfish  ===========================================
                    Tetraodon  ===========================================
                  Zebra mbuna  ===========================================
                   Coelacanth  ===========================================
                  Spotted gar  ===========================================
                  Stickleback  ===========================================
     Mexican tetra (cavefish)  ===========================================
           Southern platyfish  ===========================================
                X. tropicalis  ===========================================
                   Budgerigar  ===========================================
                Scarlet macaw  ===========================================
          Medium ground finch  ===========================================
       White-throated sparrow  ===========================================
                      Chicken  -------------------------------------------
              Squirrel monkey  ===========================================
                  Rock pigeon  ===========================================
                      Lamprey  ===========================================
                 Mallard duck  ===========================================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 11 and 12 in window
B D                  Opossum 1bp
B D          Tasmanian devil 1bp
B D                  Wallaby 1bp
B D                 Platypus 1bp
B D       American alligator 2576bp
  D          Green seaturtle 28bp
  D           Painted turtle 43bp
  D Chinese softshell turtle 821bp

Alignment block 12 of 384 in window, 133309099 - 133309101, 3 bps 
B D                     Human  gcg
B D                     Chimp  gcg
B D                   Gorilla  gcg
B D                 Orangutan  gcg
B D                    Gibbon  gcg
B D       Crab-eating macaque  gcg
B D                    Baboon  gcg
B D              Green monkey  gcg
B D                  Marmoset  gat
B D                  Bushbaby  gcg
           Chinese tree shrew  acg
B D                  Squirrel  gcg
       Lesser Egyptian jerboa  gcg
                 Prairie vole  gcg
B D           Chinese hamster  gcg
               Golden hamster  gcg
B D                     Mouse  gcg
B D                       Rat  gcg
B D            Naked mole-rat  gcg
B D                Guinea pig  gcg
                   Chinchilla  gcg
             Brush-tailed rat  gcg
B D                       Pig  tcg
B D                   Dolphin  gcg
                 Killer whale  gcg
B D                       Cow  gcg
B D          White rhinoceros  gcg
B D                   Ferret   atg
B D                     Panda  gag
               Pacific walrus  gtg
                 Weddell seal  gtg
             Black flying-fox  gcg
B D                   Megabat  gcg
                Big brown bat  gcg
B D                  Microbat  gcg
B D                  Hedgehog  --g
B D                     Shrew  tcg
B D                  Elephant  gcg
B D                   Manatee  gcg
             Cape golden mole  gcg
B D                    Tenrec  gcg
                     Aardvark  gcg
B D                   Opossum  acg
B D           Tasmanian devil  acg
B D                   Wallaby  acg
               Domestic goat  ===
B D                     Sheep  ===
            Tibetan antelope  ===
        David's myotis (bat)  ===
              Bactrian camel  ===
B D                    Alpaca  ===
B D                       Dog  ===
B D                       Cat  ===
B D                    Rabbit  ===
B D                 Armadillo  ===
B D                     Horse  ===
         Princess of Burundi  ===
B D              Nile tilapia  ===
B D                      Fugu  ===
      Yellowbelly pufferfish  ===
B D                 Tetraodon  ===
                 Zebra mbuna  ===
B D                Coelacanth  ===
                 Spotted gar  ===
B D               Stickleback  ===
    Mexican tetra (cavefish)  ===
  D  Chinese softshell turtle  ===
  D           Green seaturtle  ===
  D       Collared flycatcher  ---
          Southern platyfish  ===
B D             X. tropicalis  ===
B D                Budgerigar  ===
  D             Scarlet macaw  ===
B D                  Platypus  ===
B D       Medium ground finch  ===
  D    White-throated sparrow  ===
  D          Peregrine falcon  ---
  D              Saker falcon  ---
B D                    Turkey  ---
B D                   Chicken  ---
B D                    Lizard  ---
B D               Zebra finch  ---
B D           Squirrel monkey  ===
  D            Painted turtle  ===
          Tibetan ground jay  ---
  D               Rock pigeon  ===
B D                   Lamprey  ===
  D              Mallard duck  ===
B D                    Rhesus  NNN
B D        American alligator  ===

Alignment block 13 of 384 in window, 133309102 - 133309102, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
B D                  Bushbaby  c
           Chinese tree shrew  t
B D            Naked mole-rat  t
B D                Guinea pig  t
                   Chinchilla  t
             Brush-tailed rat  t
B D                       Pig  t
B D                   Dolphin  t
                 Killer whale  t
B D                       Cow  t
B D          White rhinoceros  t
B D                   Ferret   t
B D                     Panda  c
               Pacific walrus  t
                 Weddell seal  t
             Black flying-fox  c
B D                   Megabat  c
                Big brown bat  t
B D                  Microbat  t
B D                  Hedgehog  a
B D                     Shrew  c
B D                  Elephant  c
B D                   Manatee  c
             Cape golden mole  t
B D                    Tenrec  c
                     Aardvark  c
B D                   Opossum  t
B D           Tasmanian devil  t
B D                   Wallaby  t
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
        David's myotis (bat)  =
              Bactrian camel  =
B D                    Alpaca  =
B D                     Mouse  -
B D                       Dog  =
B D                       Rat  -
                Prairie vole  -
B D           Chinese hamster  -
              Golden hamster  -
B D                  Squirrel  -
B D                       Cat  =
B D                    Rabbit  =
B D                 Armadillo  =
      Lesser Egyptian jerboa  -
B D                     Horse  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  =
    Mexican tetra (cavefish)  =
  D  Chinese softshell turtle  =
  D           Green seaturtle  =
  D       Collared flycatcher  -
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
  D             Scarlet macaw  =
B D                  Platypus  =
B D       Medium ground finch  =
  D    White-throated sparrow  =
  D          Peregrine falcon  -
  D              Saker falcon  -
B D                    Turkey  -
B D                   Chicken  -
B D                    Lizard  -
B D               Zebra finch  -
B D           Squirrel monkey  =
  D            Painted turtle  =
          Tibetan ground jay  -
  D               Rock pigeon  =
B D                   Lamprey  =
  D              Mallard duck  =
B D                    Rhesus  N
B D        American alligator  =

Inserts between block 13 and 14 in window
B D                 Elephant 62bp
B D                  Manatee 93bp

Alignment block 14 of 384 in window, 133309103 - 133309103, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  g
B D                  Bushbaby  g
           Chinese tree shrew  g
B D            Naked mole-rat  g
B D                Guinea pig  a
                   Chinchilla  g
             Brush-tailed rat  g
B D                       Pig  g
B D                   Dolphin  g
                 Killer whale  g
B D                       Cow  g
B D          White rhinoceros  g
B D                   Ferret   g
B D                     Panda  g
               Pacific walrus  g
                 Weddell seal  g
             Black flying-fox  g
B D                   Megabat  g
                Big brown bat  c
B D                  Microbat  g
B D                  Hedgehog  g
B D                     Shrew  g
                     Aardvark  g
B D                   Opossum  g
B D           Tasmanian devil  g
B D                   Wallaby  g
B D                  Platypus  g
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
        David's myotis (bat)  =
              Bactrian camel  =
B D                    Alpaca  =
B D                     Mouse  -
B D                       Dog  =
B D                       Rat  -
                Prairie vole  -
B D           Chinese hamster  -
              Golden hamster  -
B D                  Squirrel  -
B D                       Cat  =
B D                    Rabbit  =
B D                   Manatee  =
B D                  Elephant  =
B D                 Armadillo  =
      Lesser Egyptian jerboa  -
B D                    Tenrec  -
B D                     Horse  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  =
    Mexican tetra (cavefish)  =
  D  Chinese softshell turtle  =
  D           Green seaturtle  =
  D       Collared flycatcher  -
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
  D             Scarlet macaw  =
B D       Medium ground finch  =
  D    White-throated sparrow  =
  D          Peregrine falcon  -
  D              Saker falcon  -
B D                    Turkey  -
B D                   Chicken  -
B D                    Lizard  -
B D               Zebra finch  -
B D           Squirrel monkey  =
  D            Painted turtle  =
          Tibetan ground jay  -
  D               Rock pigeon  =
B D                   Lamprey  =
  D              Mallard duck  =
            Cape golden mole  -
B D                    Rhesus  N
B D        American alligator  =

Inserts between block 14 and 15 in window
                    Aardvark 57bp

Alignment block 15 of 384 in window, 133309104 - 133309104, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D                  Bushbaby  g
           Chinese tree shrew  a
B D            Naked mole-rat  g
B D                Guinea pig  c
                   Chinchilla  c
             Brush-tailed rat  c
B D                       Pig  a
B D                   Dolphin  a
                 Killer whale  a
B D                       Cow  a
B D          White rhinoceros  a
B D                   Ferret   a
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  g
B D                   Megabat  g
                Big brown bat  a
B D                  Microbat  a
B D                  Hedgehog  c
B D                     Shrew  c
             Cape golden mole  a
B D                    Tenrec  c
B D                   Opossum  g
B D           Tasmanian devil  g
B D                   Wallaby  g
B D                  Platypus  a
  D              Saker falcon  c
  D          Peregrine falcon  c
  D       Collared flycatcher  g
B D               Zebra finch  t
           Tibetan ground jay  c
B D                    Turkey  g
B D                    Lizard  g
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
        David's myotis (bat)  =
              Bactrian camel  =
B D                    Alpaca  =
B D                     Mouse  -
B D                       Dog  =
B D                       Rat  -
                Prairie vole  -
B D           Chinese hamster  -
              Golden hamster  -
B D                  Squirrel  -
B D                       Cat  =
B D                    Rabbit  =
B D                   Manatee  =
B D                  Elephant  =
B D                 Armadillo  =
      Lesser Egyptian jerboa  -
B D                     Horse  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  =
    Mexican tetra (cavefish)  =
  D  Chinese softshell turtle  =
  D           Green seaturtle  =
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
  D             Scarlet macaw  =
B D       Medium ground finch  =
  D    White-throated sparrow  =
B D                   Chicken  -
B D           Squirrel monkey  =
  D            Painted turtle  =
  D               Rock pigeon  =
B D                   Lamprey  =
                    Aardvark  =
  D              Mallard duck  =
B D                    Rhesus  N
B D        American alligator  =

Inserts between block 15 and 16 in window
            Cape golden mole 1bp
B D                   Tenrec 1bp

Alignment block 16 of 384 in window, 133309105 - 133309106, 2 bps 
B D                     Human  gc
B D                     Chimp  gc
B D                   Gorilla  gc
B D                 Orangutan  gc
B D                    Gibbon  gc
B D       Crab-eating macaque  ac
B D                    Baboon  ac
B D              Green monkey  ac
B D                  Marmoset  gg
B D                  Bushbaby  ct
           Chinese tree shrew  ac
       Lesser Egyptian jerboa  -t
                 Prairie vole  -t
B D           Chinese hamster  -t
               Golden hamster  -t
B D                     Mouse  -t
B D                       Rat  -t
B D            Naked mole-rat  gt
B D                Guinea pig  gt
                   Chinchilla  gt
             Brush-tailed rat  at
B D                       Pig  gc
B D                   Dolphin  cc
                 Killer whale  cc
B D                       Cow  gc
B D          White rhinoceros  gc
B D                   Ferret   gc
B D                     Panda  gc
               Pacific walrus  gc
                 Weddell seal  gc
             Black flying-fox  gc
B D                   Megabat  gc
                Big brown bat  gt
B D                  Microbat  gt
B D                  Hedgehog  gc
B D                     Shrew  gc
             Cape golden mole  -c
B D                    Tenrec  -c
B D                   Opossum  gc
B D                   Wallaby  gt
  D              Saker falcon  ct
  D          Peregrine falcon  ct
  D       Collared flycatcher  ac
B D               Zebra finch  ac
           Tibetan ground jay  cc
B D                    Turkey  gt
B D                    Lizard  ac
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
        David's myotis (bat)  ==
              Bactrian camel  ==
B D                    Alpaca  ==
B D                       Dog  ==
B D                  Squirrel  --
B D                       Cat  ==
B D                    Rabbit  ==
B D                   Manatee  ==
B D                  Elephant  ==
B D                 Armadillo  ==
B D                     Horse  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
B D                      Fugu  ==
      Yellowbelly pufferfish  ==
B D                 Tetraodon  ==
                 Zebra mbuna  ==
B D                Coelacanth  ==
                 Spotted gar  ==
B D               Stickleback  ==
    Mexican tetra (cavefish)  ==
  D  Chinese softshell turtle  ==
  D           Green seaturtle  ==
          Southern platyfish  ==
B D             X. tropicalis  ==
B D                Budgerigar  ==
  D             Scarlet macaw  ==
B D                  Platypus  --
B D       Medium ground finch  ==
  D    White-throated sparrow  ==
B D                   Chicken  --
B D           Squirrel monkey  ==
  D            Painted turtle  ==
B D           Tasmanian devil  --
  D               Rock pigeon  ==
B D                   Lamprey  ==
                    Aardvark  ==
  D              Mallard duck  ==
B D                    Rhesus  NN
B D        American alligator  ==

Inserts between block 16 and 17 in window
  D             Saker falcon 3bp
  D         Peregrine falcon 3bp
  D      Collared flycatcher 21bp
B D              Zebra finch 13bp
          Tibetan ground jay 3bp
B D                   Turkey 15bp
B D                   Lizard 5bp

Alignment block 17 of 384 in window, 133309107 - 133309110, 4 bps 
B D                     Human  aaaa
B D                     Chimp  aaaa
B D                   Gorilla  aaaa
B D                 Orangutan  aaaa
B D                    Gibbon  aaaa
B D       Crab-eating macaque  aaaa
B D                    Baboon  aaaa
B D              Green monkey  aaaa
B D                  Marmoset  gaaa
B D                  Bushbaby  caga
           Chinese tree shrew  gaag
       Lesser Egyptian jerboa  gcaa
                 Prairie vole  gaaa
B D           Chinese hamster  gaaa
               Golden hamster  gatt
B D                     Mouse  gaca
B D                       Rat  gaga
B D            Naked mole-rat  gaag
B D                Guinea pig  gaag
                   Chinchilla  gaga
             Brush-tailed rat  gaag
B D                       Pig  cgag
B D                   Dolphin  cgag
                 Killer whale  cgag
B D                       Cow  agag
B D          White rhinoceros  cgac
B D                   Ferret   aaag
B D                     Panda  caag
               Pacific walrus  caag
                 Weddell seal  caaa
             Black flying-fox  cgag
B D                   Megabat  cgag
                Big brown bat  cgag
B D                  Microbat  tgag
B D                  Hedgehog  gagg
B D                     Shrew  tgag
             Cape golden mole  ga--
B D                    Tenrec  ca--
B D                   Opossum  taag
B D                   Wallaby  tctg
B D                  Platypus  gagg
  D              Saker falcon  --aa
  D          Peregrine falcon  --aa
  D       Collared flycatcher  --aa
B D               Zebra finch  --aa
B D                    Turkey  --at
B D        American alligator  --gg
B D                    Lizard  --a-
               Domestic goat  ====
B D                     Sheep  ====
            Tibetan antelope  ====
        David's myotis (bat)  ====
              Bactrian camel  ====
B D                    Alpaca  ====
B D                       Dog  ====
B D                  Squirrel  ----
B D                       Cat  ====
B D                    Rabbit  ====
B D                   Manatee  ====
B D                  Elephant  ====
B D                 Armadillo  ====
B D                     Horse  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
B D                      Fugu  ====
      Yellowbelly pufferfish  ====
B D                 Tetraodon  ====
                 Zebra mbuna  ====
B D                Coelacanth  ====
                 Spotted gar  ====
B D               Stickleback  ====
    Mexican tetra (cavefish)  ====
  D  Chinese softshell turtle  ====
  D           Green seaturtle  ====
          Southern platyfish  ====
B D             X. tropicalis  ====
B D                Budgerigar  ====
  D             Scarlet macaw  ====
B D       Medium ground finch  ====
  D    White-throated sparrow  ====
B D                   Chicken  ----
B D           Squirrel monkey  ====
  D            Painted turtle  ====
          Tibetan ground jay  ====
B D           Tasmanian devil  ----
  D               Rock pigeon  ====
B D                   Lamprey  ====
                    Aardvark  ====
  D              Mallard duck  ====
B D                    Rhesus  NNNN

Inserts between block 17 and 18 in window
B D                  Opossum 305bp
B D                 Platypus 2bp

Alignment block 18 of 384 in window, 133309111 - 133309129, 19 bps 
B D                     Human  ga--gggaa---aaagta------------------gttgta
B D                     Chimp  ga--gggaa---aaagta------------------gttgta
B D                   Gorilla  ga--gggaa---aaagta------------------gttgta
B D                 Orangutan  ga--gggaa---aaagta------------------gttgta
B D                    Gibbon  gg--gggaa---aaagta------------------gttgta
B D       Crab-eating macaque  tt--gggaa---aaggca------------------gttgtg
B D                    Baboon  tt--gggaa---aaggcg------------------gttgtg
B D              Green monkey  tt--gggaa---aaggca------------------gttgtg
B D                  Marmoset  ga--ggaaa---agggca------------------gttgta
B D                  Bushbaby  ag--gg------agggca------------------gttgtt
           Chinese tree shrew  ga--gg------------------------------------
       Lesser Egyptian jerboa  agaagggtggccgagg--------------------------
                 Prairie vole  acctgggcg---gaag--------------------------
B D           Chinese hamster  ac----------------------------------------
               Golden hamster  ac----------------------------------------
B D                     Mouse  acccgggcg---gaag--------------------------
B D                       Rat  aacccggcg---aaag--------------------------
B D            Naked mole-rat  gc--ggacg---aaggc-------------------------
B D                Guinea pig  gc--ggacg---gaggc-------------------------
                   Chinchilla  gc--ggacg---gaggg-------------------------
             Brush-tailed rat  gc--ggacg---gaggc-------------------------
B D                       Pig  ga--gggag---agggca------------------gttgt-
B D                   Dolphin  ga--aggag---agagcg------------------gttgt-
                 Killer whale  ga--aggag---agagcg------------------gttgt-
B D                       Cow  ga--aagag---aaggca------------------gttgc-
B D          White rhinoceros  -----gccg---agggcc------------------gttgtc
B D                   Ferret   ga--gagag---aaggca------------------gttgt-
               Pacific walrus  gg--gggag---aacgcg------------------gttgt-
                 Weddell seal  cg--gcgag---aaggca------------------gctgt-
             Black flying-fox  ga--aggag---agggcg------------------gttgc-
B D                   Megabat  ga--gggag---agggcg------------------gtcgc-
                Big brown bat  -----ggaa---agggga------------------gttat-
B D                  Microbat  -----ggaa---agggga------------------gttgt-
B D                  Hedgehog  cc--ggcgg---------------------------------
B D                     Shrew  cc--ggcga---agggc-------------------gccgt-
B D                   Opossum  ------------gggggg------------------tgagct
B D                   Wallaby  --------------ggcg------------------ggacct
B D                  Platypus  --------g---agggcaccggagacctcctgtctgggtatc
  D              Saker falcon  ---gaggag---agagc-------------------------
  D          Peregrine falcon  ---gaggag---agagc-------------------------
  D       Collared flycatcher  ---gagcga---cggcg-------------------------
B D               Zebra finch  ---aggcgg----ggta-------------------------
B D                    Turkey  ---gagtgc---tcagc-------------------------
B D        American alligator  ---gggtgc---tgggc-------------------------
               Domestic goat  ==========================================
B D                     Sheep  ==========================================
            Tibetan antelope  ==========================================
        David's myotis (bat)  ==========================================
              Bactrian camel  ==========================================
B D                    Alpaca  ==========================================
B D                     Panda  ------------------------------------------
B D                       Dog  ==========================================
B D                  Squirrel  ------------------------------------------
B D                       Cat  ==========================================
B D                    Rabbit  ==========================================
B D                   Manatee  ==========================================
B D                  Elephant  ==========================================
B D                 Armadillo  ==========================================
B D                    Tenrec  ------------------------------------------
B D                     Horse  ==========================================
         Princess of Burundi  ==========================================
B D              Nile tilapia  ==========================================
B D                      Fugu  ==========================================
      Yellowbelly pufferfish  ==========================================
B D                 Tetraodon  ==========================================
                 Zebra mbuna  ==========================================
B D                Coelacanth  ==========================================
                 Spotted gar  ==========================================
B D               Stickleback  ==========================================
    Mexican tetra (cavefish)  ==========================================
  D  Chinese softshell turtle  ==========================================
  D           Green seaturtle  ==========================================
          Southern platyfish  ==========================================
B D             X. tropicalis  ==========================================
B D                Budgerigar  ==========================================
  D             Scarlet macaw  ==========================================
B D       Medium ground finch  ==========================================
  D    White-throated sparrow  ==========================================
B D                   Chicken  ------------------------------------------
B D                    Lizard  ------------------------------------------
B D           Squirrel monkey  ==========================================
  D            Painted turtle  ==========================================
          Tibetan ground jay  ==========================================
B D           Tasmanian devil  ------------------------------------------
  D               Rock pigeon  ==========================================
B D                   Lamprey  ==========================================
                    Aardvark  ==========================================
  D              Mallard duck  ==========================================
            Cape golden mole  ------------------------------------------
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 18 and 19 in window
      Lesser Egyptian jerboa 4bp
                Prairie vole 4bp
B D                    Mouse 4bp
B D                      Rat 4bp
B D           Naked mole-rat 5bp
B D               Guinea pig 5bp
                  Chinchilla 5bp
            Brush-tailed rat 5bp
B D                      Pig 1bp
B D                  Dolphin 2bp
                Killer whale 2bp
B D                      Cow 2bp
B D                  Ferret  2bp
              Pacific walrus 2bp
                Weddell seal 2bp
B D                    Shrew 1bp
  D             Saker falcon 6bp
  D         Peregrine falcon 6bp
  D      Collared flycatcher 12bp
B D              Zebra finch 713bp
B D                   Turkey 1bp
B D       American alligator 18bp

Alignment block 19 of 384 in window, 133309130 - 133309135, 6 bps 
B D                     Human  ggatcc
B D                     Chimp  ggatcc
B D                   Gorilla  ggatcc
B D                 Orangutan  ggatcc
B D                    Gibbon  ggatcc
B D       Crab-eating macaque  ggatcc
B D                    Baboon  ggatcc
B D              Green monkey  ggaccc
B D                  Marmoset  ggatcc
B D                  Bushbaby  gtgtcg
B D          White rhinoceros  cgg---
B D                   Opossum  agcctg
B D                   Wallaby  agaatg
B D                  Platypus  gggcc-
  D              Saker falcon  --gcat
  D          Peregrine falcon  --gcat
  D       Collared flycatcher  tgacgg
B D               Zebra finch  tgacac
           Tibetan ground jay  --accc
B D                    Turkey  --gcat
B D        American alligator  -cgccc
  D           Green seaturtle  --ttct
  D            Painted turtle  --gcct
B D                    Lizard  -----t
B D                  Hedgehog  ------
B D                     Shrew  ======
               Domestic goat  ======
B D                     Sheep  ======
B D                       Cow  ======
            Tibetan antelope  ======
               Big brown bat  ------
B D                  Microbat  ------
        David's myotis (bat)  ======
              Bactrian camel  ======
B D                    Alpaca  ======
B D                     Mouse  ======
B D                     Panda  ------
B D                       Dog  ======
B D                       Rat  ======
                Prairie vole  ======
B D           Chinese hamster  ------
              Golden hamster  ------
                Killer whale  ======
B D                   Ferret   ======
B D                  Squirrel  ------
B D                       Cat  ======
          Chinese tree shrew  ------
              Pacific walrus  ======
B D            Naked mole-rat  ======
B D                    Rabbit  ======
                  Chinchilla  ======
B D                Guinea pig  ======
B D                   Manatee  ======
B D                  Elephant  ======
B D                 Armadillo  ======
      Lesser Egyptian jerboa  ======
            Brush-tailed rat  ======
B D                    Tenrec  ------
B D                     Horse  ======
            Black flying-fox  ------
         Princess of Burundi  ======
B D              Nile tilapia  ======
B D                      Fugu  ======
      Yellowbelly pufferfish  ======
B D                 Tetraodon  ======
                 Zebra mbuna  ======
B D                Coelacanth  ======
                 Spotted gar  ======
B D               Stickleback  ======
    Mexican tetra (cavefish)  ======
  D  Chinese softshell turtle  ======
          Southern platyfish  ======
B D             X. tropicalis  ======
B D                Budgerigar  ======
  D             Scarlet macaw  ======
B D       Medium ground finch  ======
  D    White-throated sparrow  ======
B D                   Chicken  ------
B D           Squirrel monkey  ======
B D           Tasmanian devil  ------
  D               Rock pigeon  ======
B D                   Lamprey  ======
                    Aardvark  ======
  D              Mallard duck  ======
                Weddell seal  ======
            Cape golden mole  ------
B D                   Dolphin  ======
B D                       Pig  ======
B D                    Rhesus  NNNNNN
B D                   Megabat  ------

Inserts between block 19 and 20 in window
B D         White rhinoceros 2bp
  D             Saker falcon 2bp
  D         Peregrine falcon 2bp
  D      Collared flycatcher 3bp
B D              Zebra finch 1bp
B D                   Turkey 2bp
B D       American alligator 1bp
  D          Green seaturtle 2bp
  D           Painted turtle 2bp
B D                   Lizard 1bp

Alignment block 20 of 384 in window, 133309136 - 133309136, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  t
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D                  Bushbaby  t
B D                   Opossum  a
B D                   Wallaby  a
B D       Medium ground finch  a
B D               Zebra finch  g
B D        American alligator  c
  D           Green seaturtle  c
  D            Painted turtle  g
B D                  Hedgehog  -
B D                     Shrew  =
               Domestic goat  =
B D                     Sheep  =
B D                       Cow  =
            Tibetan antelope  =
               Big brown bat  -
B D                  Microbat  -
        David's myotis (bat)  =
              Bactrian camel  =
B D                    Alpaca  =
B D                     Mouse  =
B D                     Panda  -
B D                       Dog  =
B D                       Rat  =
                Prairie vole  =
B D           Chinese hamster  -
              Golden hamster  -
                Killer whale  =
B D                   Ferret   =
B D                  Squirrel  -
B D                       Cat  =
          Chinese tree shrew  -
              Pacific walrus  =
B D            Naked mole-rat  =
B D                    Rabbit  =
                  Chinchilla  =
B D                Guinea pig  =
B D                   Manatee  =
B D                  Elephant  =
B D                 Armadillo  =
      Lesser Egyptian jerboa  =
            Brush-tailed rat  =
B D                    Tenrec  -
B D                     Horse  =
            Black flying-fox  -
B D          White rhinoceros  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  =
    Mexican tetra (cavefish)  =
  D  Chinese softshell turtle  =
  D       Collared flycatcher  =
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
  D             Scarlet macaw  =
B D                  Platypus  -
  D    White-throated sparrow  =
  D          Peregrine falcon  =
  D              Saker falcon  =
B D                    Turkey  =
B D                   Chicken  -
B D                    Lizard  =
B D           Squirrel monkey  =
          Tibetan ground jay  -
B D           Tasmanian devil  -
  D               Rock pigeon  =
B D                   Lamprey  =
                    Aardvark  =
  D              Mallard duck  =
                Weddell seal  =
            Cape golden mole  -
B D                   Dolphin  =
B D                       Pig  =
B D                    Rhesus  N
B D                   Megabat  -

Inserts between block 20 and 21 in window
B D                 Bushbaby 7bp
B D                  Opossum 6bp
B D                  Wallaby 5bp

Alignment block 21 of 384 in window, 133309137 - 133309153, 17 bps 
B D                     Human  -----------gtggggcctacg-gc---------------------g-------g--------------
B D                     Chimp  -----------gcggggcctacg-gc---------------------t-------g--------------
B D                   Gorilla  -----------gcagggcctacg-gc---------------------t-------g--------------
B D                 Orangutan  -----------gcggggcctaca-gc---------------------t-------g--------------
B D                    Gibbon  -----------gtggggcctacg-gc---------------------t-------g--------------
B D       Crab-eating macaque  -----------gctgggcctacg-tc---------------------t-------g--------------
B D                    Baboon  -----------gctgggcctacg-gc---------------------t-------g--------------
B D              Green monkey  -----------gctgggcctacg-gc---------------------t-------g--------------
B D                  Marmoset  -----------gtgggtcctacg-gc---------------------t-------g--------------
B D           Squirrel monkey  -----------gcggggcctacg-gt---------------------c-------g--------------
B D                  Bushbaby  -----------gctgggccctcg-gc---------------------a-------ggcgggacccaaggt
           Chinese tree shrew  -------------agggcctaat-tc---------------------c-------g--------------
       Lesser Egyptian jerboa  -----------ccggag-----c-ct---------------------g-------g--------------
                 Prairie vole  -----------cctgagcctccgaca---------------------c-------a--------------
B D           Chinese hamster  -----------ccggagcacccc------------------------t-------a--------------
               Golden hamster  -----------cctgagcccccc-ca---------------------c-------a--------------
B D                     Mouse  -----------cctgag-----c-cc---------------------c-------a--------------
B D                       Rat  -----------cctgagctcccc-cc---------------------c-------a--------------
B D            Naked mole-rat  -----------tctgaggggcgc-cc---------------------gagt----g--------------
B D                Guinea pig  -----------gctgagcggcac-cg---------------------gggtgt--c--------------
                   Chinchilla  -----------tcggacgggcgc-cg---------------------gagcccgag--------------
             Brush-tailed rat  -----------gcggagggccgg-cg---------------------g-------g--------------
B D                       Pig  ----------------------------------------------------------------------
B D                   Dolphin  -----------------------------------------------g-------t--------------
                 Killer whale  -----------------------------------------------g-------t--------------
B D                       Cow  -----------------------------------------------g-------t--------------
B D          White rhinoceros  ------------------------gcggggcctgaggc---------t-------c--------------
B D                   Ferret   -----------------------------------------------g-------c--------------
B D                     Panda  -----------------------------------gaccaa---tgtg-------t--------------
               Pacific walrus  ------------------------acggggaatgcggccgactccggg-------c--------------
                 Weddell seal  ------------------------acgcgg-ctgcggccgactccggg-------c--------------
             Black flying-fox  -----------------------------------------------c-------g--------------
B D                   Megabat  -----------------------------------------------c-------g--------------
                Big brown bat  -----------------------------------------------c-------t--------------
B D                  Microbat  -----------------------------------------------c-------t--------------
B D                     Shrew  -----------------------------------------------g-------g--------------
             Cape golden mole  --------------------------------------------------------gttcgcgcacgcgc
B D                    Tenrec  --------------------------------------------------------gtg-----atttga
B D                   Opossum  ------------------------------------------------------------gggtttaggg
B D                   Wallaby  ------------------------------------------------------------aggctgaggg
B D                  Platypus  ----------------------------------------------------------------------
  D              Saker falcon  -----------ccaggg-----------------------------------------------------
  D          Peregrine falcon  -----------ccaggg-----------------------------------------------------
  D       Collared flycatcher  gaggg----ggacaggg-----------------------------------------------------
B D       Medium ground finch  gtgggacccagactggt-----------------------------------------------------
B D               Zebra finch  gcgggtcgcggtgaggc-----------------------------------------------------
           Tibetan ground jay  ----tcctcagcccacg-----------------------------------------------------
B D                    Turkey  gaggtgtaggatctacg-----------------------------------------------------
B D        American alligator  gtgggctccggggacgc-----------------------------------------------------
  D           Green seaturtle  cccggct--ctggaagg-----------------------------------------------------
  D            Painted turtle  gcctgctacccgcgggg-----------------------------------------------------
  D  Chinese softshell turtle  ---ggccacacacaagt-----------------------------------------------------
B D                    Lizard  gggggaggcaaagaaag-----------------------------------------------------
B D                  Hedgehog  ----------------------------------------------------------------------
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
B D                       Dog  ======================================================================
B D                  Squirrel  ----------------------------------------------------------------------
B D                       Cat  ======================================================================
B D                    Rabbit  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D                 Armadillo  ======================================================================
B D                     Horse  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
  D             Scarlet macaw  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                   Chicken  ----------------------------------------------------------------------
B D           Tasmanian devil  ----------------------------------------------------------------------
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
                    Aardvark  ======================================================================
  D              Mallard duck  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ----c
                        Chimp  ----c
                      Gorilla  ----c
                    Orangutan  ----c
                       Gibbon  ----c
          Crab-eating macaque  ----c
                       Baboon  ----c
                 Green monkey  ----c
                     Marmoset  ----c
              Squirrel monkey  ----c
                     Bushbaby  ----c
           Chinese tree shrew  ----c
       Lesser Egyptian jerboa  ----c
                 Prairie vole  ----c
              Chinese hamster  ----c
               Golden hamster  ----c
                        Mouse  ----c
                          Rat  ----c
               Naked mole-rat  ----c
                   Guinea pig  ----t
                   Chinchilla  ----t
             Brush-tailed rat  ----t
                          Pig  ----a
                      Dolphin  ----g
                 Killer whale  ----g
                          Cow  ----g
             White rhinoceros  ----g
                      Ferret   ----g
                        Panda  ----g
               Pacific walrus  ----g
                 Weddell seal  ----g
             Black flying-fox  ----a
                      Megabat  ----a
                Big brown bat  ----a
                     Microbat  ----a
                        Shrew  ----g
             Cape golden mole  ----g
                       Tenrec  ----g
                      Opossum  cagaa
                      Wallaby  ----g
                     Platypus  ---gt
                 Saker falcon  -----
             Peregrine falcon  -----
          Collared flycatcher  -----
          Medium ground finch  -----
                  Zebra finch  -----
           Tibetan ground jay  -----
                       Turkey  -----
           American alligator  -----
              Green seaturtle  -----
               Painted turtle  -----
     Chinese softshell turtle  -----
                       Lizard  -----
                     Hedgehog  -----
                Domestic goat  =====
                        Sheep  =====
             Tibetan antelope  =====
         David's myotis (bat)  =====
               Bactrian camel  =====
                       Alpaca  =====
                          Dog  =====
                     Squirrel  -----
                          Cat  =====
                       Rabbit  =====
                      Manatee  =====
                     Elephant  =====
                    Armadillo  =====
                        Horse  =====
          Princess of Burundi  =====
                 Nile tilapia  =====
                         Fugu  =====
       Yellowbelly pufferfish  =====
                    Tetraodon  =====
                  Zebra mbuna  =====
                   Coelacanth  =====
                  Spotted gar  =====
                  Stickleback  =====
     Mexican tetra (cavefish)  =====
           Southern platyfish  =====
                X. tropicalis  =====
                   Budgerigar  =====
                Scarlet macaw  =====
       White-throated sparrow  =====
                      Chicken  -----
              Tasmanian devil  -----
                  Rock pigeon  =====
                      Lamprey  =====
                     Aardvark  =====
                 Mallard duck  =====
                       Rhesus  NNNNN

Inserts between block 21 and 22 in window
  D             Saker falcon 12bp
  D         Peregrine falcon 12bp
          Tibetan ground jay 39bp
B D                   Turkey 11bp
  D          Green seaturtle 2bp
  D           Painted turtle 2bp
  D Chinese softshell turtle 2bp
B D                   Lizard 1bp

Alignment block 22 of 384 in window, 133309154 - 133309168, 15 bps 
B D                     Human  gagg------c---ggggccggag
B D                     Chimp  gagg------c---ggggccggag
B D                   Gorilla  gagg------c---ggggccggag
B D                 Orangutan  gggg------c---ggggccagag
B D                    Gibbon  tggg------c---ggggccggag
B D       Crab-eating macaque  gggg------c---ggggccggag
B D                    Baboon  gggg------c---ggggccggag
B D              Green monkey  gggg------c---ggggctggag
B D                  Marmoset  gggg------c---ggggccgcag
B D           Squirrel monkey  gggg------c---ggggctggag
B D                  Bushbaby  tagg------g---tgggccggag
           Chinese tree shrew  g-gg------c---ggg-------
       Lesser Egyptian jerboa  aggg------c---ggggccg---
                 Prairie vole  aggg------c---ggggccg---
B D           Chinese hamster  aggg------c---ggggctg---
               Golden hamster  aggg------c---ggggccg---
B D                     Mouse  aggg------a---ggggcct---
B D                       Rat  gggg------c---ggggcct---
B D            Naked mole-rat  gagg------t---gggg------
B D                Guinea pig  gagg------t---gggg------
                   Chinchilla  cggg------g---ggtg------
             Brush-tailed rat  gggg------t---gggg------
B D                       Pig  gggg------c---ggggccagcg
B D                   Dolphin  gggg------c---ggagccggcg
                 Killer whale  gggg------c---ggagccggcg
B D                       Cow  gggg------c---ggagcggatc
B D          White rhinoceros  gggg------t---ggggcctggg
B D                   Ferret   gggg------c---ggagtctgcg
B D                     Panda  gggg------c---ggggcctgca
               Pacific walrus  gggg------c---ggggccggcg
                 Weddell seal  ggggcggggcc---ggggccggcg
             Black flying-fox  gggg------c---ggggccga-g
B D                   Megabat  gggg------c---ggggccga-g
                Big brown bat  gggg------c---agggcttaca
B D                  Microbat  gggg------c---agggcctaca
B D                     Shrew  tggg------c---ggggcctgag
             Cape golden mole  aagg------a---cgagttgctg
B D                    Tenrec  gagg------c---aggggaggtg
B D                   Opossum  agag------gtggggggggggct
B D           Tasmanian devil  -ggg------c---ggggcggggt
B D                   Wallaby  cggg------ctatggggcggggc
B D                  Platypus  ctgg------c---caggctgggg
  D              Saker falcon  ggga------g---tgggtgg---
  D          Peregrine falcon  ggga------g---tgggtgg---
  D       Collared flycatcher  acgg------c---gggg------
B D       Medium ground finch  gtga------g---tggg------
B D               Zebra finch  acgg------g---cggg------
B D                    Turkey  atca------a---agggtcg---
  D           Green seaturtle  agtg------g---ggaactg---
  D            Painted turtle  ggat------g---ggaaatg---
  D  Chinese softshell turtle  gaag------c---agaacccccc
B D                    Lizard  ggga------g---ggaggaa---
B D               Stickleback  gaag------c---gatgctgcga
B D                  Hedgehog  ------------------------
               Domestic goat  ========================
B D                     Sheep  ========================
            Tibetan antelope  ========================
        David's myotis (bat)  ========================
              Bactrian camel  ========================
B D                    Alpaca  ========================
B D                       Dog  ========================
B D                  Squirrel  ------------------------
B D                       Cat  ========================
B D                    Rabbit  ========================
B D                   Manatee  ========================
B D                  Elephant  ========================
B D                 Armadillo  ========================
B D                     Horse  ========================
         Princess of Burundi  ========================
B D              Nile tilapia  ========================
B D                      Fugu  ========================
      Yellowbelly pufferfish  ========================
B D                 Tetraodon  ========================
                 Zebra mbuna  ========================
B D                Coelacanth  ========================
                 Spotted gar  ========================
    Mexican tetra (cavefish)  ========================
          Southern platyfish  ========================
B D             X. tropicalis  ========================
B D                Budgerigar  ========================
  D             Scarlet macaw  ========================
  D    White-throated sparrow  ========================
B D                   Chicken  ------------------------
          Tibetan ground jay  ========================
  D               Rock pigeon  ========================
B D                   Lamprey  ========================
                    Aardvark  ========================
  D              Mallard duck  ========================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNN
B D        American alligator  ------------------------

Inserts between block 22 and 23 in window
  D             Saker falcon 1bp
  D         Peregrine falcon 1bp
B D      Medium ground finch 1bp
B D              Zebra finch 1bp
B D                   Turkey 4bp
  D          Green seaturtle 6bp
  D           Painted turtle 4bp
  D Chinese softshell turtle 22bp

Alignment block 23 of 384 in window, 133309169 - 133309192, 24 bps 
B D                     Human  cctgga----g--------------tg--gg------------------aggggcc--------------
B D                     Chimp  cctgga----g--------------tg--gg------------------agggacc--------------
B D                   Gorilla  cttgga----g--------------tg--gg------------------cggggcc--------------
B D                 Orangutan  cctgga----g--------------tg--gg------------------cggagcc--------------
B D                    Gibbon  cctgga----g--------------tg--gg------------------cggggcctgagtctgcaggg-
B D       Crab-eating macaque  ccggga----g--------------tg--gg------------------cggggcctgaggctgcagggc
B D                    Baboon  ccggga----g--------------tg--gg------------------cggggcctgaggctgcagggc
B D              Green monkey  ccggga----g--------------tg--gg------------------cggggcctga-----------
B D                  Marmoset  cctgga----g--------------tg--gg------------------cgggacc--------------
B D           Squirrel monkey  cctgga----g--------------tg--ggcaggg------------ccggggcc--------------
B D                  Bushbaby  cctaca----g--------------ag--gg------------------tgtggcc--------------
       Lesser Egyptian jerboa  --ag------g--------------cg--gg---------------------------------------
                 Prairie vole  --agggg---g--------------cg--gg---------------------------------------
B D           Chinese hamster  --aggg----g--------------ca--gg---------------------------------------
               Golden hamster  --aggggggag--------------ta--gg---------------------------------------
B D                     Mouse  --agaa----g--------------ca--ag---------------------------------------
B D                       Rat  --agga----g--------------ca--gg---------------------------------------
B D            Naked mole-rat  ----------g--------------cg--gg---------------------------------------
B D                Guinea pig  ----------g--------------cg--gg---------------------------------------
                   Chinchilla  ----------g---------------g--gg---------------------------------------
             Brush-tailed rat  ----------g--------------cg--gg---------------------------------------
B D                       Pig  ccctgg----g---ggcggggct------gt---------------------------------------
B D                   Dolphin  ccctgg----g---ggcagggcttgga--tg---------------------------------------
                 Killer whale  ccccgg----g---ggcagggcttgga--tg---------------------------------------
B D                       Cow  ccaggt----g---ggcggggccaaggctcg---------------------------------------
B D          White rhinoceros  tcgtgg----g------cggagtctgg--tg---------------------------------------
B D                   Ferret   gtcgg--------------------gg--ag---------------------------------------
B D                     Panda  gccggg----g------cggcccaggg--ag---------------------------------------
               Pacific walrus  agaggg----g------cggacc--tg--cg---------------------------------------
                 Weddell seal  ggaggg----g------cggacc--tg--tg---------------------------------------
             Black flying-fox  gc--------------------------------------------------------------------
B D                   Megabat  gc--------------------------------------------------------------------
                Big brown bat  gctgtg----g--------ggcc--gg--ggcctgg------------gcggggcct-------------
B D                  Microbat  gctgtg----g-----------------------------------------------------------
B D                     Shrew  ggtggg-----------cggggctata--tg---------------------------------------
             Cape golden mole  gg--------------------------------------------------------------------
B D                    Tenrec  cc--------------------------------------------------------------------
B D                   Opossum  ctgggg----taagaacaaggcagagg--gg------------------aggagcctggggc--------
B D           Tasmanian devil  ccgggg----c-----------------------------------------------------------
B D                   Wallaby  ctgggg----cgatacgtaggcagagg--gg------------------tggagccttggaggagaccga
B D                  Platypus  -------------------------------ccaggcgcgctggagtcccgaggc---------------
  D              Saker falcon  ----------------------------------------------------------------------
  D          Peregrine falcon  ----------------------------------------------------------------------
  D       Collared flycatcher  ----------------------------------------------------------------------
B D       Medium ground finch  ----------------------------------------------------------------------
B D               Zebra finch  ----------------------------------------------------------------------
B D                    Turkey  ----------------------------------------------------------------------
B D        American alligator  ----------------------------------------------------------------------
  D           Green seaturtle  ----------------------------------------------------------------------
  D            Painted turtle  ----------------------------------------------------------------------
  D  Chinese softshell turtle  ----------------------------------------------------------------------
B D                    Lizard  ----------------------------------------------------------------------
B D               Stickleback  ----------------------------------------------------------------------
B D                  Hedgehog  ----------------------------------------------------------------------
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
B D                       Dog  ======================================================================
B D                  Squirrel  ----------------------------------------------------------------------
B D                       Cat  ======================================================================
          Chinese tree shrew  ----------------------------------------------------------------------
B D                    Rabbit  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D                 Armadillo  ======================================================================
B D                     Horse  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
  D             Scarlet macaw  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                   Chicken  ----------------------------------------------------------------------
          Tibetan ground jay  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
                    Aardvark  ======================================================================
  D              Mallard duck  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  ----------------------------tacgac-
                        Chimp  ----------------------------tacgac-
                      Gorilla  ----------------------------tacgac-
                    Orangutan  ----------------------------tgaggc-
                       Gibbon  ggggccggagcctggagtgggcggggcttacggc-
          Crab-eating macaque  ggtgctggagcctggagtgggcggggcctacggc-
                       Baboon  ggtgctggagcctggagtgggcggggcctacggc-
                 Green monkey  -------------------------------ggc-
                     Marmoset  ----------------------------tgaggc-
              Squirrel monkey  ----------------------------tgaggc-
                     Bushbaby  ----------------------------taaggc-
       Lesser Egyptian jerboa  -----------------------------------
                 Prairie vole  -----------------------------------
              Chinese hamster  -----------------------------------
               Golden hamster  -----------------------------------
                        Mouse  -----------------------------------
                          Rat  -----------------------------------
               Naked mole-rat  -----------------------------------
                   Guinea pig  -----------------------------------
                   Chinchilla  -----------------------------------
             Brush-tailed rat  -----------------------------------
                          Pig  -----------------------------------
                      Dolphin  -----------------------------------
                 Killer whale  -----------------------------------
                          Cow  -----------------------------------
             White rhinoceros  -----------------------------------
                      Ferret   -----------------------------------
                        Panda  -----------------------------------
               Pacific walrus  -----------------------------------
                 Weddell seal  -----------------------------------
             Black flying-fox  -----------------------------------
                      Megabat  -----------------------------------
                Big brown bat  -----------------------------------
                     Microbat  -----------------------------------
                        Shrew  -----------------------------------
             Cape golden mole  -----------------------------------
                       Tenrec  -----------------------------------
                      Opossum  -----------------------------------
              Tasmanian devil  -----------------------------------
                      Wallaby  gggaggggtaggtcttggggg--------------
                     Platypus  -----------------------------------
                 Saker falcon  ----------------cctggtgggggatgcacc-
             Peregrine falcon  ----------------cctggtgggggatgcacc-
          Collared flycatcher  ------------------ctggctgccacaggag-
          Medium ground finch  ----------------cccagactggtgtgagtg-
                  Zebra finch  ----------------cgcggtgtggcacgggcg-
                       Turkey  ----------------cctgggaggggaagggct-
           American alligator  -------------------gggccaggacacggg-
              Green seaturtle  ----------------tagagtagaggggctggg-
               Painted turtle  ----------------cccagcggagggggta---
     Chinese softshell turtle  ----------------cccgactgagaagcaaaa-
                       Lizard  -------------------gggaggggaaaagga-
                  Stickleback  ----------ccggagccggggcggccagaaagcc
                     Hedgehog  -----------------------------------
                Domestic goat  ===================================
                        Sheep  ===================================
             Tibetan antelope  ===================================
         David's myotis (bat)  ===================================
               Bactrian camel  ===================================
                       Alpaca  ===================================
                          Dog  ===================================
                     Squirrel  -----------------------------------
                          Cat  ===================================
           Chinese tree shrew  -----------------------------------
                       Rabbit  ===================================
                      Manatee  ===================================
                     Elephant  ===================================
                    Armadillo  ===================================
                        Horse  ===================================
          Princess of Burundi  ===================================
                 Nile tilapia  ===================================
                         Fugu  ===================================
       Yellowbelly pufferfish  ===================================
                    Tetraodon  ===================================
                  Zebra mbuna  ===================================
                   Coelacanth  ===================================
                  Spotted gar  ===================================
     Mexican tetra (cavefish)  ===================================
           Southern platyfish  ===================================
                X. tropicalis  ===================================
                   Budgerigar  ===================================
                Scarlet macaw  ===================================
       White-throated sparrow  ===================================
                      Chicken  -----------------------------------
           Tibetan ground jay  ===================================
                  Rock pigeon  ===================================
                      Lamprey  ===================================
                     Aardvark  ===================================
                 Mallard duck  ===================================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 23 and 24 in window
B D                  Opossum 5bp
B D          Tasmanian devil 5bp
B D                  Wallaby 5bp
  D             Saker falcon 6bp
  D         Peregrine falcon 6bp
  D      Collared flycatcher 6bp
B D      Medium ground finch 6bp
B D              Zebra finch 6bp
B D                   Turkey 6bp
B D       American alligator 6bp
  D          Green seaturtle 21bp
  D           Painted turtle 9bp
  D Chinese softshell turtle 16bp
B D                   Lizard 20bp

Alignment block 24 of 384 in window, 133309193 - 133309203, 11 bps 
B D                     Human  tgcg--------------------------------gggc---ggg
B D                     Chimp  tgcg--------------------------------gggc---ggg
B D                   Gorilla  tgcg--------------------------------gggc---ggg
B D                 Orangutan  tgca--------------------------------gggc---ggt
B D                    Gibbon  tgcg--------------------------------gggc---ggg
B D       Crab-eating macaque  tgcg--------------------------------gagc---ggg
B D                    Baboon  tgcg--------------------------------gagc---ggg
B D              Green monkey  tgca--------------------------------gggc---ggt
B D                  Marmoset  cgcg--------------------------------gggt---ggg
B D           Squirrel monkey  ttcg--------------------------------aggc---agg
B D                  Bushbaby  tggggcgggcccggagttcacagggggtgggggaatgggc---ggg
B D                       Pig  ------------------------------------gggc---ggg
B D                   Dolphin  ------------------------------------ggga---ggg
                 Killer whale  ------------------------------------gggc---ggg
B D                       Cow  ------------------------------------gggc---ggg
B D          White rhinoceros  ------------------------------------gggc---gga
B D                   Ferret   ------------------------------------gggc---ggg
B D                     Panda  ------------------------------------gggc---ggg
               Pacific walrus  ------------------------------------gggc---ggg
                 Weddell seal  ------------------------------------gggc---ggg
             Black flying-fox  ------------------------------------gggc---ggg
B D                   Megabat  ------------------------------------gggc---ggg
                Big brown bat  ------------------------------------gggc---ggg
B D                  Microbat  ------------------------------------gggc---ggg
B D                     Shrew  ------------------------------------ggcc---ggg
B D                  Elephant  tccg--------------------------------ggca---gtt
             Cape golden mole  tatg--------------------------------gggtgggggg
B D                    Tenrec  tatg--------------------------------gggc---ggg
B D                   Opossum  --tg--------------------------------agac---cta
B D           Tasmanian devil  --cg--------------------------------aggc---cga
B D                   Wallaby  --cg--------------------------------aggc---gga
B D                  Platypus  ---g--------------------------------ggga---gga
  D              Saker falcon  -----------------------------------tgctc---tgc
  D          Peregrine falcon  -----------------------------------tgctc---tgc
  D       Collared flycatcher  -----------------------------------ggccc---cgg
B D       Medium ground finch  -----------------------------------agact---ggt
B D               Zebra finch  -----------------------------------ggtgt---tac
B D                    Turkey  -----------------------------------gggac---tgg
B D        American alligator  -----------------------------------accca---tgt
  D           Green seaturtle  -----------------------------------tcccc---ggc
  D            Painted turtle  -----------------------------------tcgac---ggc
  D  Chinese softshell turtle  -----------------------------------cctcc---cac
B D                    Lizard  -----------------------------------tgtgc---ggt
B D               Stickleback  cgcg--------------------------------ggac---g--
B D                  Hedgehog  ----------------------------------------------
               Domestic goat  ==============================================
B D                     Sheep  ==============================================
            Tibetan antelope  ==============================================
        David's myotis (bat)  ==============================================
              Bactrian camel  ==============================================
B D                    Alpaca  ==============================================
B D                     Mouse  ----------------------------------------------
B D                       Dog  ==============================================
B D                       Rat  ----------------------------------------------
                Prairie vole  ----------------------------------------------
B D           Chinese hamster  ----------------------------------------------
              Golden hamster  ----------------------------------------------
B D                  Squirrel  ----------------------------------------------
B D                       Cat  ==============================================
          Chinese tree shrew  ----------------------------------------------
B D            Naked mole-rat  ----------------------------------------------
B D                    Rabbit  ==============================================
                  Chinchilla  ----------------------------------------------
B D                Guinea pig  ----------------------------------------------
B D                   Manatee  ==============================================
B D                 Armadillo  ==============================================
      Lesser Egyptian jerboa  ----------------------------------------------
            Brush-tailed rat  ----------------------------------------------
B D                     Horse  ==============================================
         Princess of Burundi  ==============================================
B D              Nile tilapia  ==============================================
B D                      Fugu  ==============================================
      Yellowbelly pufferfish  ==============================================
B D                 Tetraodon  ==============================================
                 Zebra mbuna  ==============================================
B D                Coelacanth  ==============================================
                 Spotted gar  ==============================================
    Mexican tetra (cavefish)  ==============================================
          Southern platyfish  ==============================================
B D             X. tropicalis  ==============================================
B D                Budgerigar  ==============================================
  D             Scarlet macaw  ==============================================
  D    White-throated sparrow  ==============================================
B D                   Chicken  ----------------------------------------------
          Tibetan ground jay  ==============================================
  D               Rock pigeon  ==============================================
B D                   Lamprey  ==============================================
                    Aardvark  ==============================================
  D              Mallard duck  ==============================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 24 and 25 in window
B D                  Opossum 2bp
B D          Tasmanian devil 2bp
B D                  Wallaby 2bp
B D                 Platypus 3bp
  D             Saker falcon 13bp
  D         Peregrine falcon 13bp
  D      Collared flycatcher 4bp
B D      Medium ground finch 4bp
B D              Zebra finch 4bp
B D                   Turkey 5bp
B D       American alligator 9bp
  D          Green seaturtle 1bp
  D           Painted turtle 1bp
  D Chinese softshell turtle 1bp
B D                   Lizard 1bp

Alignment block 25 of 384 in window, 133309204 - 133309204, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D       Crab-eating macaque  g
B D                    Baboon  g
B D              Green monkey  g
B D                  Marmoset  a
B D           Squirrel monkey  g
B D                  Bushbaby  g
       Lesser Egyptian jerboa  a
                 Prairie vole  a
B D           Chinese hamster  a
               Golden hamster  a
B D                     Mouse  a
B D                       Rat  a
B D            Naked mole-rat  g
B D                Guinea pig  g
                   Chinchilla  a
             Brush-tailed rat  g
B D                       Pig  a
B D                   Dolphin  g
                 Killer whale  g
B D                       Cow  g
B D          White rhinoceros  g
B D                   Ferret   g
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  a
B D                   Megabat  a
                Big brown bat  g
B D                  Microbat  g
B D                     Shrew  c
  D              Saker falcon  g
  D          Peregrine falcon  g
  D       Collared flycatcher  g
B D       Medium ground finch  g
B D               Zebra finch  g
B D                    Turkey  g
B D        American alligator  g
B D                  Hedgehog  -
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
        David's myotis (bat)  =
              Bactrian camel  =
B D                    Alpaca  =
B D                       Dog  =
B D                  Squirrel  -
B D                       Cat  =
          Chinese tree shrew  -
B D                    Rabbit  =
B D                   Manatee  =
B D                  Elephant  -
B D                 Armadillo  =
B D                    Tenrec  -
B D                     Horse  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  -
    Mexican tetra (cavefish)  =
  D  Chinese softshell turtle  =
  D           Green seaturtle  =
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
  D             Scarlet macaw  =
B D                  Platypus  =
  D    White-throated sparrow  =
B D                   Chicken  -
B D                    Lizard  =
  D            Painted turtle  =
          Tibetan ground jay  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                   Opossum  =
  D               Rock pigeon  =
B D                   Lamprey  =
                    Aardvark  =
  D              Mallard duck  =
            Cape golden mole  -
B D                    Rhesus  N

Inserts between block 25 and 26 in window
B D                      Pig 1bp
B D                      Cow 3bp
  D             Saker falcon 5bp
  D         Peregrine falcon 5bp
  D      Collared flycatcher 19bp
B D      Medium ground finch 6bp
B D              Zebra finch 6bp
B D                   Turkey 10bp
B D       American alligator 8bp

Alignment block 26 of 384 in window, 133309205 - 133309205, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                 Orangutan  c
B D                    Gibbon  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  g
B D           Squirrel monkey  g
B D                  Bushbaby  t
       Lesser Egyptian jerboa  c
                 Prairie vole  c
B D           Chinese hamster  c
               Golden hamster  c
B D                     Mouse  c
B D                       Rat  c
B D            Naked mole-rat  c
B D                Guinea pig  c
                   Chinchilla  c
             Brush-tailed rat  c
B D                       Pig  c
B D                   Dolphin  g
                 Killer whale  g
B D                       Cow  g
B D          White rhinoceros  c
B D                   Ferret   c
B D                     Panda  c
               Pacific walrus  c
                 Weddell seal  c
             Black flying-fox  c
B D                   Megabat  c
                Big brown bat  c
B D                  Microbat  c
B D                     Shrew  c
  D              Saker falcon  t
  D          Peregrine falcon  t
  D       Collared flycatcher  t
B D       Medium ground finch  c
           Tibetan ground jay  c
B D                    Turkey  t
B D                    Lizard  c
B D                  Hedgehog  -
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
        David's myotis (bat)  =
              Bactrian camel  =
B D                    Alpaca  =
B D                       Dog  =
B D                  Squirrel  -
B D                       Cat  =
          Chinese tree shrew  -
B D                    Rabbit  =
B D                   Manatee  =
B D                  Elephant  -
B D                 Armadillo  =
B D                    Tenrec  -
B D                     Horse  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  -
    Mexican tetra (cavefish)  =
  D  Chinese softshell turtle  =
  D           Green seaturtle  =
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
  D             Scarlet macaw  =
B D                  Platypus  =
  D    White-throated sparrow  =
B D                   Chicken  -
B D               Zebra finch  =
  D            Painted turtle  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                   Opossum  =
  D               Rock pigeon  =
B D                   Lamprey  =
                    Aardvark  =
  D              Mallard duck  =
            Cape golden mole  -
B D                    Rhesus  N
B D        American alligator  =

Inserts between block 26 and 27 in window
B D                   Lizard 1855bp

Alignment block 27 of 384 in window, 133309206 - 133309224, 19 bps 
B D                     Human  c------ggagcctg-----------ggac------------------------ag--------------
B D                     Chimp  c------ggagcctg-----------ggac------------------------ag--------------
B D                   Gorilla  c------ggagcctg-----------ggac------------------------ag--------------
B D                 Orangutan  c------ggaagctg-----------gggc------------------------ag--------------
B D                    Gibbon  c------ggagcctg-----------ggac------------------------ag--------------
B D       Crab-eating macaque  g------ggagcctg-----------ggac------------------------ag--------------
B D                    Baboon  c------ggagcctg-----------ggac------------------------ag--------------
B D              Green monkey  t------ggagcctg-----------gagc------------------------gg--------------
B D                  Marmoset  t------ggagcctg-----------aagt------------------------ag--------------
B D           Squirrel monkey  c------ggaacctg-----------ggtc------------------------ag--------------
B D                  Bushbaby  c------ggagccca-----------ctct------------------------gg--------------
       Lesser Egyptian jerboa  ga-----g----cct-----------ctgc------------------------gg--------------
                 Prairie vole  t------g----tgg-----------ctgt------------------------gg--------------
B D           Chinese hamster  c------g----tcg-----------ctgt------------------------gg--------------
               Golden hamster  t------g----tcg-----------ctgt------------------------gg--------------
B D                     Mouse  t------g----tcg-----------ctgt------------------------gg--------------
B D                       Rat  t------g----ccg-----------ctgt------------------------gg--------------
B D            Naked mole-rat  c-----------tgagcctgtgggcgcgct------------------------tg--------------
B D                Guinea pig  c-----------tcg------------gct------------------------tg--------------
                   Chinchilla  c-----------tga-----------cgct------------------------gg--------------
             Brush-tailed rat  c-----------tgg-----------cgct------------------------cg--------------
B D                       Pig  a------agagctcg---------------------------------------ag--------------
B D                   Dolphin  a------aatgcttg---------------------------------------gg--------------
                 Killer whale  a------aatgcttg---------------------------------------gg--------------
B D                       Cow  g------ggccctag---------------------------------------gg--------------
B D          White rhinoceros  c------tccggctg-----------ag--------------------------gg--------------
B D                   Ferret   c------aacgggcg------------g--------------------------gg--------------
B D                     Panda  c------aatgcatg------------g--------------------------gg--------------
               Pacific walrus  c------gttgggtg------------g--------------------------gg--------------
                 Weddell seal  c------gttgggtg-------------------------------------------------------
             Black flying-fox  t---------------------------------------------------------------------
B D                   Megabat  t------taccgttg-----------tg--------------------------gg--------------
                Big brown bat  c------tatggctc-----------cgcg------------------------gg--------------
B D                  Microbat  c------t----------------------------------------------gg--------------
B D                     Shrew  a------tgtggtgg-------------------------------------------------------
B D                  Elephant  ----------gccag----------ctggg------------------------gg--------------
             Cape golden mole  ----------gcctg-----acctctcgag------------------------gg--------------
B D                    Tenrec  ----------gcctg--------cctggag------------------------gg--------------
B D                   Opossum  -gtt---gaagcctg-----------ggat------------------------agaaggaggcagagga
B D           Tasmanian devil  -ggt---gggacctt-----------tctt------------------------ga---------ctaga
B D                   Wallaby  -ggt---ggggtctg-----------cggt------------------------gaaagacaggctgaga
B D                  Platypus  --gccgggccacccg-----------cggcca----------------------tg--------------
  D              Saker falcon  ------------------------------caga-----------------ggtgg--------------
  D          Peregrine falcon  ------------------------------caga-----------------ggtgg--------------
  D       Collared flycatcher  ------------------------------ccca-----------------ccagg--------------
B D       Medium ground finch  ------------------------------caga-----------------ctggt--------------
B D               Zebra finch  ---------------------------------------------------gtggc--------------
           Tibetan ground jay  ------------------------------cccaacaccc------gctcttcgag--------------
B D                    Turkey  ------------------------------cagggcatc------------aagac--------------
B D        American alligator  -------------------------------------cccacgtgggccctgtggg--------------
  D           Green seaturtle  ----------------------------------------------------ctgg--------------
  D            Painted turtle  ----------------------------------------------------ccag--------------
  D  Chinese softshell turtle  ----------------------------------------------------ccag--------------
B D               Stickleback  -----------------------------------------------cgaggccag--------------
B D                  Hedgehog  ----------------------------------------------------------------------
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
B D                       Dog  ======================================================================
B D                  Squirrel  ----------------------------------------------------------------------
B D                       Cat  ======================================================================
          Chinese tree shrew  ----------------------------------------------------------------------
B D                    Rabbit  ======================================================================
B D                   Manatee  ======================================================================
B D                 Armadillo  ======================================================================
B D                     Horse  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
  D             Scarlet macaw  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                   Chicken  ----------------------------------------------------------------------
B D                    Lizard  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
                    Aardvark  ======================================================================
  D              Mallard duck  ======================================================================
B D                    Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                        Human  -g----c-----------------------------gg
                        Chimp  -g----c-----------------------------gg
                      Gorilla  -g----c-----------------------------gg
                    Orangutan  -g----c-----------------------------gg
                       Gibbon  -g----c-----------------------------gg
          Crab-eating macaque  -g----c-----------------------------ga
                       Baboon  -g----c-----------------------------ga
                 Green monkey  -g----c-----------------------------gg
                     Marmoset  -g----c-----------------------------gg
              Squirrel monkey  -g----c-----------------------------gg
                     Bushbaby  -g----t-----------------------------gg
       Lesser Egyptian jerboa  -g----a-----------------------------gg
                 Prairie vole  -g----cg----------------------------gg
              Chinese hamster  -g----c-----------------------------gg
               Golden hamster  -g----c-----------------------------gg
                        Mouse  -g----c-----------------------------gg
                          Rat  -g----c-----------------------------gg
               Naked mole-rat  -g----cggcggcggtgcgggccggacagtgtggatgc
                   Guinea pig  -g----c-----------------------------gc
                   Chinchilla  -g----c-----------------------------gc
             Brush-tailed rat  -g----c-----------------------------gc
                          Pig  -g----c-----------------------------gg
                      Dolphin  -g----c-----------------------------gg
                 Killer whale  -g----c-----------------------------gg
                          Cow  -g----c-----------------------------gg
             White rhinoceros  -g----c-----------------------------gg
                      Ferret   -g----c-----------------------------gg
                        Panda  -g----c-----------------------------gg
               Pacific walrus  -g----c-----------------------------gg
                 Weddell seal  --------------------------------------
             Black flying-fox  --------------------------------------
                      Megabat  -g----c-----------------------------gg
                Big brown bat  -g----t-----------------------------gg
                     Microbat  -g----c-----------------------------gg
                        Shrew  --------------------------------------
                     Elephant  -c----c-----------------------------ga
             Cape golden mole  -g----c-----------------------------gg
                       Tenrec  -g----t-----------------------------gg
                      Opossum  ag----g-----------------------------gg
              Tasmanian devil  -g----c-----------------------------ag
                      Wallaby  gg----c-----------------------------gg
                     Platypus  -g----c-----------------------------gg
                 Saker falcon  -a----c-----------------------------ag
             Peregrine falcon  -a----c-----------------------------ag
          Collared flycatcher  -g----t-----------------------------gg
          Medium ground finch  -g----t-----------------------------ga
                  Zebra finch  -a----c-----------------------------gg
           Tibetan ground jay  -g----t-----------------------------ga
                       Turkey  -a----c-----------------------------aa
           American alligator  -g----t-----------------------------tg
              Green seaturtle  -a----a-----------------------------gg
               Painted turtle  -c----t-----------------------------gg
     Chinese softshell turtle  -agccta-----------------------------gg
                  Stickleback  -g----t-----------------------------gg
                     Hedgehog  --------------------------------------
                Domestic goat  ======================================
                        Sheep  ======================================
             Tibetan antelope  ======================================
         David's myotis (bat)  ======================================
               Bactrian camel  ======================================
                       Alpaca  ======================================
                          Dog  ======================================
                     Squirrel  --------------------------------------
                          Cat  ======================================
           Chinese tree shrew  --------------------------------------
                       Rabbit  ======================================
                      Manatee  ======================================
                    Armadillo  ======================================
                        Horse  ======================================
          Princess of Burundi  ======================================
                 Nile tilapia  ======================================
                         Fugu  ======================================
       Yellowbelly pufferfish  ======================================
                    Tetraodon  ======================================
                  Zebra mbuna  ======================================
                   Coelacanth  ======================================
                  Spotted gar  ======================================
     Mexican tetra (cavefish)  ======================================
           Southern platyfish  ======================================
                X. tropicalis  ======================================
                   Budgerigar  ======================================
                Scarlet macaw  ======================================
       White-throated sparrow  ======================================
                      Chicken  --------------------------------------
                       Lizard  ======================================
                  Rock pigeon  ======================================
                      Lamprey  ======================================
                     Aardvark  ======================================
                 Mallard duck  ======================================
                       Rhesus  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Inserts between block 27 and 28 in window
            Black flying-fox 8bp
  D             Saker falcon 4bp
  D         Peregrine falcon 4bp
  D      Collared flycatcher 8bp
B D      Medium ground finch 4bp
B D              Zebra finch 4bp
          Tibetan ground jay 4bp
B D                   Turkey 4bp
B D       American alligator 15bp
  D          Green seaturtle 22bp
  D           Painted turtle 7108bp
  D Chinese softshell turtle 8bp

Alignment block 28 of 384 in window, 133309225 - 133309229, 5 bps 
B D                     Human  -ga---cct
B D                     Chimp  -ga---cct
B D                   Gorilla  -ga---cct
B D                 Orangutan  -gg---ccg
B D                    Gibbon  -ga---cct
B D       Crab-eating macaque  -ta---cct
B D                    Baboon  -ta---cct
B D              Green monkey  -gg---cct
B D                  Marmoset  -gg---cct
B D           Squirrel monkey  -ga---ctt
B D                  Bushbaby  -gg---cct
       Lesser Egyptian jerboa  -gaaccctg
                 Prairie vole  -gg---cta
B D           Chinese hamster  -gg---cca
               Golden hamster  -gg---cta
B D                     Mouse  -gg---ctt
B D                       Rat  -gg---ctt
B D            Naked mole-rat  -gc---tta
B D                Guinea pig  -gc---tga
                   Chinchilla  -gc---tcg
             Brush-tailed rat  -gc---cca
B D                       Pig  -gg---ccg
B D                   Dolphin  -gg---cct
                 Killer whale  -gg---cct
B D                       Cow  -gg---ccc
B D          White rhinoceros  -gg---cct
B D                   Ferret   -ag---tct
B D                     Panda  -ag---cct
               Pacific walrus  -ag---cct
B D                   Megabat  -gg---ct-
                Big brown bat  -gg---cct
B D                  Microbat  -gg---cc-
B D                  Elephant  -g-------
             Cape golden mole  -gg---cct
B D                    Tenrec  -gg---tc-
B D                   Opossum  -at---cct
B D           Tasmanian devil  -gg---cct
B D                   Wallaby  -gg---ctt
B D                  Platypus  -cg---ct-
  D              Saker falcon  --t---cct
  D          Peregrine falcon  --t---cct
  D       Collared flycatcher  --g---att
B D       Medium ground finch  --g---acc
B D               Zebra finch  --g---tca
           Tibetan ground jay  --g---ccc
B D                    Turkey  --a---gcc
B D        American alligator  --g---ccc
B D               Stickleback  ggg---tg-
B D                  Hedgehog  ---------
B D                     Shrew  ---------
               Domestic goat  =========
B D                     Sheep  =========
            Tibetan antelope  =========
        David's myotis (bat)  =========
              Bactrian camel  =========
B D                    Alpaca  =========
B D                       Dog  =========
B D                  Squirrel  ---------
B D                       Cat  =========
          Chinese tree shrew  ---------
B D                    Rabbit  =========
B D                   Manatee  =========
B D                 Armadillo  =========
B D                     Horse  =========
            Black flying-fox  =========
         Princess of Burundi  =========
B D              Nile tilapia  =========
B D                      Fugu  =========
      Yellowbelly pufferfish  =========
B D                 Tetraodon  =========
                 Zebra mbuna  =========
B D                Coelacanth  =========
                 Spotted gar  =========
    Mexican tetra (cavefish)  =========
  D  Chinese softshell turtle  =========
  D           Green seaturtle  =========
          Southern platyfish  =========
B D             X. tropicalis  =========
B D                Budgerigar  =========
  D             Scarlet macaw  =========
  D    White-throated sparrow  =========
B D                   Chicken  ---------
B D                    Lizard  =========
  D            Painted turtle  =========
  D               Rock pigeon  =========
B D                   Lamprey  =========
                    Aardvark  =========
  D              Mallard duck  =========
                Weddell seal  ---------
B D                    Rhesus  NNNNNNNNN

Inserts between block 28 and 29 in window
B D             Green monkey 167bp
B D                      Pig 1bp
B D                      Cow 7bp
B D                 Elephant 1bp
  D             Saker falcon 1bp
  D         Peregrine falcon 1bp
  D      Collared flycatcher 1bp
B D      Medium ground finch 1bp
B D              Zebra finch 1bp
          Tibetan ground jay 1bp
B D                   Turkey 9bp
B D       American alligator 4bp

Alignment block 29 of 384 in window, 133309230 - 133309232, 3 bps 
B D                     Human  gag
B D                     Chimp  gag
B D                   Gorilla  gaa
B D                 Orangutan  gag
B D                    Gibbon  gag
B D       Crab-eating macaque  gag
B D                    Baboon  gag
B D                  Marmoset  ata
B D           Squirrel monkey  gtg
B D                  Bushbaby  -aa
             Cape golden mole  -ag
B D                   Opossum  --g
B D           Tasmanian devil  --g
B D                   Wallaby  --g
B D                  Platypus  --g
  D              Saker falcon  -ag
  D          Peregrine falcon  -ag
  D       Collared flycatcher  -tg
B D       Medium ground finch  -ag
B D               Zebra finch  -gg
           Tibetan ground jay  -gc
B D                    Turkey  -ag
B D        American alligator  -gg
  D           Green seaturtle  --g
  D  Chinese softshell turtle  --g
B D               Stickleback  ggg
B D                  Hedgehog  ---
B D                     Shrew  ---
               Domestic goat  ===
B D                     Sheep  ===
B D                       Cow  ===
            Tibetan antelope  ===
               Big brown bat  ---
B D                  Microbat  ---
        David's myotis (bat)  ===
              Bactrian camel  ===
B D                    Alpaca  ===
B D                     Mouse  ---
B D                     Panda  ---
B D                       Dog  ===
B D                       Rat  ---
                Prairie vole  ---
B D           Chinese hamster  ---
              Golden hamster  ---
                Killer whale  ---
B D                   Ferret   ---
B D                  Squirrel  ---
B D                       Cat  ===
          Chinese tree shrew  ---
              Pacific walrus  ---
B D            Naked mole-rat  ---
B D                    Rabbit  ===
                  Chinchilla  ---
B D                Guinea pig  ---
B D                   Manatee  ===
B D                  Elephant  ===
B D                 Armadillo  ===
      Lesser Egyptian jerboa  ---
            Brush-tailed rat  ---
B D                    Tenrec  ---
B D                     Horse  ===
            Black flying-fox  ===
B D          White rhinoceros  ---
         Princess of Burundi  ===
B D              Nile tilapia  ===
B D                      Fugu  ===
      Yellowbelly pufferfish  ===
B D                 Tetraodon  ===
                 Zebra mbuna  ===
B D                Coelacanth  ===
                 Spotted gar  ===
    Mexican tetra (cavefish)  ===
          Southern platyfish  ===
B D             X. tropicalis  ===
B D                Budgerigar  ===
  D             Scarlet macaw  ===
  D    White-throated sparrow  ===
B D                   Chicken  ---
B D                    Lizard  ===
  D            Painted turtle  ===
  D               Rock pigeon  ===
B D                   Lamprey  ===
                    Aardvark  ===
  D              Mallard duck  ===
                Weddell seal  ---
B D                   Dolphin  ---
B D              Green monkey  ===
B D                       Pig  ===
B D                    Rhesus  NNN
B D                   Megabat  ---

Inserts between block 29 and 30 in window
B D                Orangutan 1bp
B D                  Opossum 2bp
B D          Tasmanian devil 1bp
B D                  Wallaby 2bp
B D                 Platypus 4bp
  D             Saker falcon 1bp
  D         Peregrine falcon 1bp
  D      Collared flycatcher 1bp
B D      Medium ground finch 1bp
B D              Zebra finch 1bp
          Tibetan ground jay 1bp
B D                   Turkey 1bp
B D       American alligator 1bp
  D          Green seaturtle 1bp
  D Chinese softshell turtle 1bp

Alignment block 30 of 384 in window, 133309233 - 133309236, 4 bps 
B D                     Human  gtgg
B D                     Chimp  gtgg
B D                   Gorilla  gtgg
B D                 Orangutan  ctgg
B D                    Gibbon  gtag
B D       Crab-eating macaque  gcgg
B D                    Baboon  gcgg
B D                  Marmoset  actg
B D           Squirrel monkey  gctg
B D                  Bushbaby  gtct
       Lesser Egyptian jerboa  --gg
                 Prairie vole  --gg
B D           Chinese hamster  --gg
               Golden hamster  --gg
B D                     Mouse  --gt
B D                       Rat  --gt
B D            Naked mole-rat  --gc
B D                Guinea pig  --gc
                   Chinchilla  --gc
             Brush-tailed rat  --gc
B D          White rhinoceros  gggc
B D                   Ferret   gcgg
B D                     Panda  gtg-
               Pacific walrus  gcgg
B D                   Megabat  gagg
                Big brown bat  acag
B D                  Microbat  atgg
B D                   Manatee  --gc
B D                   Opossum  ---g
B D                   Wallaby  ---g
B D                  Platypus  gagg
  D              Saker falcon  gtgg
  D          Peregrine falcon  gtgg
  D       Collared flycatcher  gcgg
B D       Medium ground finch  gcgg
B D               Zebra finch  gtgg
           Tibetan ground jay  gggc
B D                    Turkey  caga
B D        American alligator  ctgg
  D           Green seaturtle  gtag
  D  Chinese softshell turtle  ctag
B D               Stickleback  gtga
B D                  Hedgehog  ----
B D                     Shrew  ----
               Domestic goat  ====
B D                     Sheep  ====
B D                       Cow  ====
            Tibetan antelope  ====
        David's myotis (bat)  ====
              Bactrian camel  ====
B D                    Alpaca  ====
B D                       Dog  ====
                Killer whale  ----
B D                  Squirrel  ----
B D                       Cat  ====
          Chinese tree shrew  ----
B D                    Rabbit  ====
B D